BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020193
         (329 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
 gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
          Length = 422

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 256/331 (77%), Positives = 292/331 (88%), Gaps = 4/331 (1%)

Query: 1   MWKTIELMKPY---NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYN 56
           MWK I  +K       SVS  T+  IIEE+GKHGL+D AVEVFNKC+ + NCQ  V +YN
Sbjct: 91  MWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKHGLIDQAVEVFNKCSRSLNCQHNVCVYN 150

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SLLFALCEVK+FHGAYAL+RRMIRKG VPDKRTY +LVN WCSSGK+REA+ FL+EMS K
Sbjct: 151 SLLFALCEVKMFHGAYALVRRMIRKGIVPDKRTYGVLVNGWCSSGKLREAKGFLEEMSKK 210

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GFNPPVRGRDLL++GLLNAGYLESAK MV +M+K+G V D+ TFNS++E IC +GEV+FC
Sbjct: 211 GFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFC 270

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           V+MY+SVCKLG C D+++YKILIPAVSK G IDEAFRLLHNL+EDGHKPFPSLYAPIIKG
Sbjct: 271 VDMYHSVCKLGFCPDINSYKILIPAVSKVGRIDEAFRLLHNLIEDGHKPFPSLYAPIIKG 330

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           MFRRGQFDDAFCFFSEMK+KGHPPNRPVYTM+ITMCGRGG+ VEAANYLVEMTE+GL PI
Sbjct: 331 MFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMITMCGRGGKHVEAANYLVEMTEIGLVPI 390

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           SRCFD+VTDGLKNCGKHDLA++IE LEVSLR
Sbjct: 391 SRCFDMVTDGLKNCGKHDLAKRIEQLEVSLR 421


>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 451

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 249/331 (75%), Positives = 288/331 (87%), Gaps = 2/331 (0%)

Query: 1   MWKTIELMKPYN--LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           MWK I  MK  N   S+S +T+  IIEE+G+ GL+D AVEVFN+C + NC+Q V +YNSL
Sbjct: 121 MWKLITQMKDQNPQFSISSETVRSIIEEYGRSGLIDQAVEVFNQCNSLNCEQNVDIYNSL 180

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           LFALCEVKLFHGAYAL+RR+IRKG  P+K TY++LVN WCS+GK +EAQ FL+EMS KGF
Sbjct: 181 LFALCEVKLFHGAYALVRRLIRKGLAPNKTTYSVLVNGWCSNGKFKEAQLFLEEMSKKGF 240

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NPPVRGRDLL++GLLNAGY ESAK+MV KM K+GFV D+ TFN LIE IC SGEV+FCV+
Sbjct: 241 NPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVD 300

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           MYYS+ KLG C D+++YKILIPAVSK G IDEAF+LL+N +EDGHKPFP LYAPIIKGM 
Sbjct: 301 MYYSLRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIEDGHKPFPGLYAPIIKGMC 360

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           RRGQFDDAFCFF EMK+KGHPPNRPVYTMLITMCGRGG++VEAANYLVEMTEMGLTPISR
Sbjct: 361 RRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEMTEMGLTPISR 420

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           CFD+VTDGLKNCGKHDLA++IE LEVS+ SV
Sbjct: 421 CFDMVTDGLKNCGKHDLAKRIEQLEVSVCSV 451


>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
 gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 243/330 (73%), Positives = 284/330 (86%), Gaps = 1/330 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLL 59
           MWK +  MK  NL +SP+T+S II+E+GK GLVDNAV +FN+C+ + +C Q V +YN+LL
Sbjct: 126 MWKVLLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALL 185

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           FALCEVK+FHGAYALIRRMIRKG  PDK+TY  LV  WCS+GKM+EAQEFL+EMS KGFN
Sbjct: 186 FALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFN 245

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           PP+RGRDLLV+GLLNAGYLESAK MV KM K+G V D+ TFNSLI+ IC SGEV+FC+ +
Sbjct: 246 PPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINI 305

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ VCKLGLC D++TYKILIPA SK G IDEAFRLLH  +EDGH PFPSLY PI+KGM +
Sbjct: 306 FHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCK 365

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           RGQFDDAFCFF +MK KGHPPNRPVYTMLITMCGRGGRFV+AANYL+EM E+GL PISRC
Sbjct: 366 RGQFDDAFCFFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRC 425

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           FD+VTDGLKNCGKHDLA+KIE LEVS+R +
Sbjct: 426 FDMVTDGLKNCGKHDLAKKIEQLEVSIRGI 455


>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g18390, mitochondrial; Flags: Precursor
 gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/330 (75%), Positives = 280/330 (84%), Gaps = 1/330 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           MWK ++ MK  +L +S +TL  IIE++GK+G VD AVE+FN       CQQ V +YNSLL
Sbjct: 130 MWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLL 189

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+VK+FHGAYALIRRMIRKG  PDKRTYAILVN WCS+GKM+EAQEFL EMS +GFN
Sbjct: 190 HALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFN 249

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           PP RGRDLL++GLLNAGYLESAK+MV+KM K GFV D++TFN LIE I KSGEVEFC+EM
Sbjct: 250 PPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEM 309

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           YY+ CKLGLC D+ TYK LIPAVSK G IDEAFRLL+N VEDGHKPFPSLYAPIIKGM R
Sbjct: 310 YYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCR 369

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G FDDAF FFS+MK+K HPPNRPVYTMLITMCGRGG+FV+AANYLVEMTEMGL PISRC
Sbjct: 370 NGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRC 429

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           FD+VTDGLKN GKHDLA +IE LEV LR V
Sbjct: 430 FDMVTDGLKNGGKHDLAMRIEQLEVQLRGV 459



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 1/200 (0%)

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+  + P     + L + L +    ES  +++ +M      +  ET   +IE   K+G V
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162

Query: 174 EFCVEMYYSVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +  VE++  V K LG    V  Y  L+ A+    M   A+ L+  ++  G KP    YA 
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G    G+  +A  F  EM  +G  P      +LI      G    A   + +MT+ G
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGG 282

Query: 293 LTPISRCFDLVTDGLKNCGK 312
             P  + F+++ + +   G+
Sbjct: 283 FVPDIQTFNILIEAISKSGE 302


>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 459

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/330 (75%), Positives = 280/330 (84%), Gaps = 1/330 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           MWK ++ MK  +L +S +TL  IIE++GK+G VD AVE+FN       CQQ V +YN+LL
Sbjct: 130 MWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNALL 189

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+VK+FHGAYALIRRMIRKG  PDKRTYAILVN WCS+GKM+EAQEFL EMS KGFN
Sbjct: 190 HALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRKGFN 249

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           PP RGRDLL++GLLNAGYLESAK++V+KM K GFV D+ TFN+LIE I KSGEVEFC+EM
Sbjct: 250 PPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEM 309

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           YY+ CKLGLC D+ TYK LIPAVSK G IDEAFRLL+N VEDGHKPFPSLYAPIIKGM R
Sbjct: 310 YYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCR 369

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G FDDAF FFS+MK+K HPPNRPVYTMLITMCGRGG+FV+AANYLVEMTEMGL PISRC
Sbjct: 370 NGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRC 429

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           FD+VTDGLKN GKHDLA +IE LEV LR V
Sbjct: 430 FDMVTDGLKNSGKHDLAMRIEQLEVQLRGV 459



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 5/202 (2%)

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+  + P     + L + L +    ES  +++ +M      +  ET   +IE   K+G V
Sbjct: 103 SNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHV 162

Query: 174 EFCVEMYYSVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +  VE++  V K LG    V  Y  L+ A+    M   A+ L+  ++  G KP    YA 
Sbjct: 163 DQAVELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAI 222

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTE 290
           ++ G    G+  +A  F  EM  KG +PP R    ++  +   G  ++E+A  +V+ MT+
Sbjct: 223 LVNGWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAG--YLESAKEIVDKMTK 280

Query: 291 MGLTPISRCFDLVTDGLKNCGK 312
            G  P    F+ + + +   G+
Sbjct: 281 GGFVPDILTFNTLIEAISKSGE 302


>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial [Vitis vinifera]
 gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
          Length = 454

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 241/330 (73%), Positives = 280/330 (84%), Gaps = 5/330 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           MWK    M+    ++SP  +S IIEEFGKHGLVD AVEVFNK  +A NC Q + +YNSLL
Sbjct: 129 MWKIAHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLL 184

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           FALCEVK FHGAYALIRRMIRKG  P+K+TY++LVN WC++GKM+EAQ+FL+EMS KGFN
Sbjct: 185 FALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFN 244

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           PPVRGRDLLV GLLNAGYLE+AK+MV KM K+G   D+ET NS++E ICK+GE EFC+++
Sbjct: 245 PPVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDI 304

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y  VC+LG+  +V TYKI+IPA  K G IDEAFR+LH  +EDGH+PFPSLYAPIIK + R
Sbjct: 305 YNDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCR 364

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            GQFDDAFCFFS+MK+KGHPPNRPVYTMLITMCGRGGRFV+AANYLVEMTE+ LTPISRC
Sbjct: 365 NGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRC 424

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           FD+VTDGLKNCGKHDLA KIE LEVSLR V
Sbjct: 425 FDMVTDGLKNCGKHDLARKIEQLEVSLRGV 454


>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Glycine max]
          Length = 450

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/331 (67%), Positives = 275/331 (83%), Gaps = 3/331 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSL 58
           MW  I ++   + LS+SP  ++ +IE +G +  VD +V+VFNK     NC Q + LYN+L
Sbjct: 121 MWALIRQVTLHHRLSLSPSAVASVIEAYGDNRHVDQSVQVFNKSPLLLNCPQTLPLYNAL 180

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           L +LC  KLFHGAYAL+RRM+RKG  PDK TYA+LVNAWCS+GK+REA+ FL+EMS+KGF
Sbjct: 181 LRSLCHNKLFHGAYALVRRMLRKGLRPDKTTYAVLVNAWCSNGKLREAKLFLEEMSEKGF 240

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NPPVRGRDLLV+GLLNAGY+ESAK MV  MIKQG V D+ TFN+++ET+ K  +V+FCV 
Sbjct: 241 NPPVRGRDLLVEGLLNAGYVESAKGMVRNMIKQGSVPDVGTFNAVVETVSKE-DVQFCVG 299

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +Y+ VC LG+  DV+TYKIL+PAVSK+GM+DEAFRLL+N +EDGHKPFPSLYAP+IK + 
Sbjct: 300 LYHEVCALGMAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIEDGHKPFPSLYAPVIKALC 359

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           RRGQFDDAFCFF +MK K HPPNRP+YTMLITMCGR G+FVEAANY+ EMTEMGL PISR
Sbjct: 360 RRGQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEAANYIFEMTEMGLVPISR 419

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           CFD+VTDGLKNCGKHDLA +++ LEVS+R V
Sbjct: 420 CFDMVTDGLKNCGKHDLARRVQELEVSIRGV 450


>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
          Length = 465

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 237/326 (72%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G+  L D AVEVFN+   F C Q   +YN+LL 
Sbjct: 137 LWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLD 196

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV+AWC++GK+REAQ FL +M+++GF+P
Sbjct: 197 ALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHP 256

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG LE AK    +M K+G + D+ TFNSL E +C SG+VEF V + 
Sbjct: 257 PVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALL 316

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 GLC D+STYK++IPAV+KAG IDEAFRL +  +EDGH+PFPSLYA IIK + + 
Sbjct: 317 ADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKA 376

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F DAF FF +MK KGHPPNRPVY ML+ MC RGGRFVEAANYLVEM+E G  P +  F
Sbjct: 377 GRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTF 436

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSL 326
           + V DGL++CGKHDLA+++E LE+S+
Sbjct: 437 NSVVDGLRHCGKHDLAQRMEQLEMSM 462


>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
          Length = 461

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 185/326 (56%), Positives = 237/326 (72%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G+  L D AVEVFN+   F C Q   +YN+LL 
Sbjct: 133 LWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQVYNALLD 192

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV+AWC++GK+REAQ FL +M+++GF+P
Sbjct: 193 ALCANGSFAGAYKLLRRMARKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHP 252

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG LE AK    +M K+G + D+ TFNSL E +C SG+VEF V + 
Sbjct: 253 PVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALL 312

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 GLC D+STYK++IPAV+KAG IDEAFRL +  +EDGH+PFPSLYA IIK + + 
Sbjct: 313 ADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKA 372

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F DAF FF +MK KGHPPNRPVY ML+ MC RGGRFVEAANYLVEM+E G  P +  F
Sbjct: 373 GRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTF 432

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSL 326
           + V DGL++CGKHDLA+++E LE+S+
Sbjct: 433 NSVVDGLRHCGKHDLAQRMEQLEMSM 458


>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
          Length = 456

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 181/327 (55%), Positives = 233/327 (71%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G   L D AVEVFN+   F C Q   +YN+LL 
Sbjct: 128 LWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLD 187

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV++WC++GK++EAQ FL +M+ +G  P
Sbjct: 188 ALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRP 247

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG+LE AK    +M K+G + D+ TFNSL E +C +G+V+F V + 
Sbjct: 248 PVRGRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLL 307

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 GLC D+STYK+++PAV+K G I+EAFRL +  VEDGH+PFPSLYA IIK + + 
Sbjct: 308 ADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKA 367

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F DAF FF +MK KGHPPNRPVY ML+ MC RGGRFVEAANYLVEM+E G TP +  F
Sbjct: 368 GRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFTPRAPTF 427

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLR 327
             V DGL++CGKHDLA ++E LEVSL+
Sbjct: 428 SAVVDGLRHCGKHDLARRLEQLEVSLK 454



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 3/188 (1%)

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M   G  L   TF+++I +   S   +  VE++  + + G       Y  L+ A+
Sbjct: 130 SLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDAL 189

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPN 261
              G    A++LL  +   G  P  + ++ ++      G+  +A  F  +M  +G  PP 
Sbjct: 190 CANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPV 249

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           R    +L+    R G   +A  + + MT+ G+ P    F+ + + L N G  D A  + L
Sbjct: 250 R-GRDLLVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSL-L 307

Query: 322 LEVSLRSV 329
            + S R +
Sbjct: 308 ADASSRGL 315


>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
 gi|223943533|gb|ACN25850.1| unknown [Zea mays]
          Length = 322

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/320 (56%), Positives = 231/320 (72%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L +SP T S +I  +G   L D AVEVFN+   F C Q   +YN+LL ALC    
Sbjct: 1   MRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLDALCANGN 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F GAY L+RRM RKG  PD+ T++ LV++WC++GK++EAQ FL +M+ +G  PPVRGRDL
Sbjct: 61  FTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDL 120

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV GL+ AG+LE AK    +M K+G + D+ TFNSL E +C +G+V+F V +       G
Sbjct: 121 LVDGLVRAGHLEQAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRG 180

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           LC D+STYK+++PAV+K G I+EAFRL +  VEDGH+PFPSLYA IIK + + G+F DAF
Sbjct: 181 LCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAF 240

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            FF +MK KGHPPNRPVY ML+ MC RGGRFVEAANYLVEM+E G TP +  F  V DGL
Sbjct: 241 AFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFTPRAPTFSAVVDGL 300

Query: 308 KNCGKHDLAEKIELLEVSLR 327
           ++CGKHDLA ++E LEVSL+
Sbjct: 301 RHCGKHDLARRLEQLEVSLK 320


>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
           mitochondrial-like [Brachypodium distachyon]
          Length = 464

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/327 (54%), Positives = 232/327 (70%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G   L + AVEVFN+   F C Q   +YN+LL 
Sbjct: 136 LWTQASDMRALGLPLSPATFSAVISSYGHSRLPEQAVEVFNRLPHFGCPQTTEVYNALLD 195

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV+AWC+SGK+REAQ FL +M+ +GF P
Sbjct: 196 ALCSNGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMASRGFRP 255

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG LE AK    +  K+G + D+ TFNSL + +C +G+V+F V + 
Sbjct: 256 PVRGRDLLVDGLVRAGRLEEAKAFAVRFTKEGVLPDVATFNSLAQALCDAGDVKFAVGLL 315

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 GLC D+STYK+++PAV+KAG I+EAFRL +  VEDGH+PFPSLYA I+K + + 
Sbjct: 316 ADASSRGLCPDISTYKVMLPAVAKAGQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKA 375

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F DAF FF +MK KGHPPNRPVY ML+ MC RGGRF++AANYLVEM+E G  P    F
Sbjct: 376 GRFGDAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFLDAANYLVEMSEAGFAPRVPTF 435

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLR 327
           + V DGL++ GKHDLA+++E LE+SL+
Sbjct: 436 NAVVDGLRHLGKHDLAQRMEQLEMSLK 462


>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 459

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/327 (53%), Positives = 234/327 (71%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G   L + AVEVFN+   F C Q   +YN+LL 
Sbjct: 131 LWTQASDMRALGLPLSPATFSAVISSYGHSRLAEQAVEVFNRLPHFGCPQTTEVYNALLD 190

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV+AWC+SGK+REAQ FL +M+ +GF P
Sbjct: 191 ALCANGNFAGAYKLLRRMARKGVAPDRATFSTLVDAWCASGKLREAQAFLDDMATRGFRP 250

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG LE AK    ++ K+G + D+ TFNSL + +C +G+VEF V + 
Sbjct: 251 PVRGRDLLVDGLVRAGRLEEAKAFALRITKEGVLPDVATFNSLAQALCDAGDVEFAVGLL 310

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 G+C D+STYK+++PAV+KAG I+EAFRL +  +EDGH+PFPSLYA I+K + + 
Sbjct: 311 ADASSRGMCPDISTYKVMLPAVAKAGRIEEAFRLFYAAIEDGHRPFPSLYAAIVKALCKA 370

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F DAF FF +MK KGHPPNRPVY ML+ MC RGGRF++AANYL+EM+E G  P +  F
Sbjct: 371 GRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFLDAANYLLEMSEAGFAPRAPTF 430

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLR 327
           ++V DGL++ GKHDLA ++E LE+SL+
Sbjct: 431 NVVVDGLRHLGKHDLARRMEQLEMSLK 457


>gi|356528050|ref|XP_003532618.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g18390, mitochondrial-like [Glycine max]
          Length = 304

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 166/264 (62%), Positives = 199/264 (75%), Gaps = 30/264 (11%)

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           KL HG YAL+RR   KG  PDK TYA+L+NAWCS+GK+REA+ FL+EMS+K         
Sbjct: 71  KLLHGTYALVRR---KGLCPDKTTYALLINAWCSNGKLREAKLFLREMSEK--------- 118

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
                            +MV  MIKQG V D+ TFN+++ET+ K   V+FCV++Y+ VC 
Sbjct: 119 -----------------EMVRSMIKQGSVPDVGTFNAVVETVSKE-NVQFCVDLYHEVCA 160

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LG+  DV+TYKIL+P VSK GMIDEAFRLL+N V+DGHKPFPSLYAP+IK +  RGQFDD
Sbjct: 161 LGMAPDVNTYKILVPTVSKDGMIDEAFRLLNNFVDDGHKPFPSLYAPVIKALCSRGQFDD 220

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AFCFF +MK K HPPNRP+YTMLITMCGR G+FVE ANY+ EMTEMGL PISRCFD+VTD
Sbjct: 221 AFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEVANYIFEMTEMGLVPISRCFDMVTD 280

Query: 306 GLKNCGKHDLAEKIELLEVSLRSV 329
           GLKNCGKHDLA K++  EVS+R V
Sbjct: 281 GLKNCGKHDLAGKVQEWEVSIRGV 304



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 52/119 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T  +++    K G++D A  + N       +    LY  ++ ALC    F  A+     
Sbjct: 168 NTYKILVPTVSKDGMIDEAFRLLNNFVDDGHKPFPSLYAPVIKALCSRGQFDDAFCFFGD 227

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           M  K   P++  Y +L+     +GK  E   ++ EM++ G  P  R  D++  GL N G
Sbjct: 228 MKAKAHPPNRPLYTMLITMCGRAGKFVEVANYIFEMTEMGLVPISRCFDMVTDGLKNCG 286


>gi|147857907|emb|CAN80394.1| hypothetical protein VITISV_001596 [Vitis vinifera]
          Length = 356

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/327 (52%), Positives = 206/327 (62%), Gaps = 62/327 (18%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           MWK    M+    ++SP  +S IIEEFGKHGLVD AVEVFNK  +A NC Q + +YNSLL
Sbjct: 86  MWKIAHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLL 141

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           FALCEVK FHGAYALIRRMIR                                   KG  
Sbjct: 142 FALCEVKYFHGAYALIRRMIR-----------------------------------KGVT 166

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +   +LV G   AG ++ A+  + +M ++GF   +   + L++ +  +G +E   EM
Sbjct: 167 PNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEM 226

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
                                 ++K   +   FR+LH  +EDGH+PFPSLYAPIIK + R
Sbjct: 227 ----------------------LAKRVELMRPFRILHRSIEDGHRPFPSLYAPIIKALCR 264

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            GQFDDAFCFFS+MK+KGHPPNRPVYTMLITMCGRGGRFV+AANYLVEMTE+ LTPISRC
Sbjct: 265 NGQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRC 324

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSL 326
           FD+VTDGLKNCGKHDLA KIE LEVSL
Sbjct: 325 FDMVTDGLKNCGKHDLARKIEQLEVSL 351


>gi|13899129|gb|AAK48986.1|AF370559_1 Unknown protein [Arabidopsis thaliana]
 gi|27311979|gb|AAO00955.1| Unknown protein [Arabidopsis thaliana]
          Length = 186

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/186 (80%), Positives = 162/186 (87%)

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           MV+KM K GFV D++TFN LIE I KSGEVEFC+EMYY+ CKLGLC D+ TYK LIPAVS
Sbjct: 1   MVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVS 60

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G IDEAFRLL+N VEDGHKPFPSLYAPIIKGM R G FDDAF FFS+MK+K HPPNRP
Sbjct: 61  KIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRP 120

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           VYTMLITMCGRGG+FV+AANYLVEMTEMGL PISRCFD+VTDGLKN GKHDLA +IE LE
Sbjct: 121 VYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKHDLAMRIEQLE 180

Query: 324 VSLRSV 329
           V LR V
Sbjct: 181 VQLRGV 186



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 58/132 (43%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L V   T   +I    K G +D A  + N C     +    LY  ++  +C   +F  A+
Sbjct: 45  LCVDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAF 104

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +    M  K   P++  Y +L+      GK  +A  +L EM++ G  P  R  D++  GL
Sbjct: 105 SFFSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGL 164

Query: 133 LNAGYLESAKQM 144
            N G  + A ++
Sbjct: 165 KNGGKHDLAMRI 176


>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
 gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
          Length = 426

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 134/330 (40%), Positives = 184/330 (55%), Gaps = 38/330 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     M+   L +SP T S +I  +G   L D AVEVFN+   F C Q   +YN+LL 
Sbjct: 130 LWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPDQAVEVFNRLPRFGCPQTTEVYNALLD 189

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC    F GAY L+RRM RKG  PD+ T++ LV++WC++GK+ EAQ FL +M+ +GF P
Sbjct: 190 ALCANGNFTGAYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLNEAQAFLDDMASRGFRP 249

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           PVRGRDLLV GL+ AG+LE AK    +M K+G + D+ TFNSL E +C +G+V+F V + 
Sbjct: 250 PVRGRDLLVDGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVALL 309

Query: 181 YSVCKLGLCADVST---YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
                 GLC D+S    Y  +I A+ KAG   +AF    ++   GH P   +Y  ++K  
Sbjct: 310 ADASSRGLCPDISHTSLYAAIIKALCKAGRFADAFAFFGDMKMKGHPPNRPVYVMLVKMC 369

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G+F +A  +  EM                                    E G TP +
Sbjct: 370 VRGGRFVEAANYLVEMS-----------------------------------EAGFTPRA 394

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
             F+ V DGL++CGKHDLA ++E LEVSL+
Sbjct: 395 PTFNAVVDGLRHCGKHDLARRLEQLEVSLK 424



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 72/172 (41%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           K  F    E F++L+  + ++        +   +  LGL    +T+  +I +   + + D
Sbjct: 104 KPSFTASAEHFDALLLPLARARLFPHLWSLASDMRGLGLPLSPTTFSAVISSYGHSRLPD 163

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A  + + L   G      +Y  ++  +   G F  A+     M  KG  P+R  ++ L+
Sbjct: 164 QAVEVFNRLPRFGCPQTTEVYNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFSTLV 223

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 G+  EA  +L +M   G  P  R  DL+ DGL   G  + A+   L
Sbjct: 224 DSWCAAGKLNEAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGHLEEAKAFAL 275


>gi|115477391|ref|NP_001062291.1| Os08g0525500 [Oryza sativa Japonica Group]
 gi|42761404|dbj|BAD11569.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624260|dbj|BAF24205.1| Os08g0525500 [Oryza sativa Japonica Group]
          Length = 182

 Score =  244 bits (624), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/179 (61%), Positives = 138/179 (77%)

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M K+G + D+ TFNSL E +C SG+VEF V +       GLC D+STYK++IPAV+KAG 
Sbjct: 1   MTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGR 60

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEAFRL +  +EDGH+PFPSLYA IIK + + G+F DAF FF +MK KGHPPNRPVY M
Sbjct: 61  IDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVM 120

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
           L+ MC RGGRFVEAANYLVEM+E G  P +  F+ V DGL++CGKHDLA+++E LE+S+
Sbjct: 121 LVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQLEMSM 179



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 60/127 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T  ++I    K G +D A  +F        +    LY +++ ALC+   F  A+A    
Sbjct: 46  STYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGD 105

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG  P++  Y +LV      G+  EA  +L EMS+ GF P     + +V GL + G 
Sbjct: 106 MKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGK 165

Query: 138 LESAKQM 144
            + A++M
Sbjct: 166 HDLAQRM 172



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 67/161 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + E     G V+ AV +    ++      +  Y  ++ A+ +      A+ L    
Sbjct: 12  TFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAA 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P    YA ++ A C +G+  +A  F  +M  KG  P      +LV+  +  G  
Sbjct: 72  LEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRF 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
             A   + +M + GF     TFNS+++ +   G+ +    M
Sbjct: 132 VEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRM 172



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 61/163 (37%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +NSL  ALC       A AL+     +G  PD  TY +++ A   +G++ EA     
Sbjct: 10  VATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFY 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              + G  P       +++ L  AG    A      M  +G   +   +  L++   + G
Sbjct: 70  AALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                      + + G      T+  ++  +   G  D A R+
Sbjct: 130 RFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRM 172


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/331 (32%), Positives = 168/331 (50%), Gaps = 12/331 (3%)

Query: 6   ELMKPY---NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           ELM+     +L VSP T+  S +I+   K G +D A  VF+   A      V+ YN+L+ 
Sbjct: 165 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A+A+I  M+ KG  PD  TY++LV+A+C + ++ EA E L  M+ +G  P
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284

Query: 121 PVRGRD-----LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            V   D     +L+ G   AG  E A  +  +M+ +    D+ TF +LI+ +CK+G+VE 
Sbjct: 285 NVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEA 344

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             ++   +  LG+  +V TY  L+  + K+G I+EA + L  +V  G  P    Y  ++ 
Sbjct: 345 ARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVY 404

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            + R  + DDA    SE+K  G  P+   Y +L+    + G+  +A   L EM   G  P
Sbjct: 405 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQP 464

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            S  F     GL   G  +LA  +ELL V L
Sbjct: 465 DSFTFAACFSGLHRSG--NLAGTMELLRVVL 493



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-----YNSLL 59
           IE M    ++    T S++++ F K   VD A+E+ +   +  C   VL+     +N L+
Sbjct: 239 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI 298

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C+   F  A AL   M+ K   PD  T+  L++  C +G++  A++ L  M + G  
Sbjct: 299 AGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 358

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V   + LV GL  +G +E A Q + +M+  G V D  T+ SL+  +C++   +  +++
Sbjct: 359 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 418

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D  TY IL+  + K+G  ++A  +L  +V  GH+P    +A    G+ R
Sbjct: 419 VSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHR 478

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            G           +  KG  P+    + ++    R G+ 
Sbjct: 479 SGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKL 517



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 46/349 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K   +   +E+F +         V+ YN+L+ +LC+      A  L   M
Sbjct: 39  TYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDM 98

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---------FNPPVRG----- 124
             +G VP+  TY++L+N  C  G++ EA+E +QEM+ K          +N  + G     
Sbjct: 99  SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS 158

Query: 125 ------------RD-------------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
                       RD              L+ GL   G ++ A  + + MI  G+V ++ T
Sbjct: 159 MTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVIT 218

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N+L+  +CK+ ++E    M  S+   G+  DV TY +L+ A  KA  +DEA  LLH + 
Sbjct: 219 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 278

Query: 220 EDGHKP---FPS--LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
             G  P    P    +  +I G  + G F+ A   F EM  K   P+   +  LI    +
Sbjct: 279 SRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCK 338

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G+   A + L  M  +G+ P    ++ +  GL   G+  + E  + LE
Sbjct: 339 AGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR--IEEACQFLE 385



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 133/280 (47%), Gaps = 5/280 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +++++   + G    A+E+F    A +     ++ YN+++  LC+         L   ++
Sbjct: 5   NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            +G  PD  TY  L+++ C +G + EA+    +MS +G  P V    +L+ GL   G ++
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRID 124

Query: 140 SAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSV--CKLGLCADVSTY 195
            A++++ +M ++    + ++ T+NS ++ +CK        E+  S+    L +  D  T+
Sbjct: 125 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + K G IDEA  +  +++  G+ P    Y  ++ G+ +  + + A      M  
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 244

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           KG  P+   Y++L+    +  R  EA   L  M   G TP
Sbjct: 245 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 125/276 (45%), Gaps = 13/276 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIR-RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN +L +LC       A  + R  M R G  P   TY  ++N  C S  +    E  +E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            ++G +P V   + L+  L  AG LE A+++   M  +G V ++ T++ LI  +CK G +
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 174 ----EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH---KPF 226
               E   EM    C   +  ++ TY   +  + K  M  EA  L+ +L  DG     P 
Sbjct: 124 DEARELIQEMTRKSCD--VLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPD 180

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              ++ +I G+ + GQ D+A   F +M   G+ PN   Y  L+    +  +   A   + 
Sbjct: 181 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            M + G+TP    + ++ D    C    + E +ELL
Sbjct: 241 SMVDKGVTPDVITYSVLVDAF--CKASRVDEALELL 274



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 108/236 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G  + A  +F +  A N Q  V+ + +L+  LC+      A  ++  M
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLM 352

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY  LV+  C SG++ EA +FL+EM   G  P       LV  L  A   
Sbjct: 353 GNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRT 412

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A Q+V+++   G+  D  T+N L++ + KSG+ E  + +   +   G   D  T+   
Sbjct: 413 DDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAAC 472

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
              + ++G +     LL  ++  G  P  +  + I+  + R G+ DD      E +
Sbjct: 473 FSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 96/205 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M   NL     T   +I+   K G V+ A ++ +          V+ YN+L+  LC+ 
Sbjct: 315 EEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKS 374

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A   +  M+  G VPD  TY  LV A C + +  +A + + E+   G++P     
Sbjct: 375 GRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 434

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++LV GL  +G  E A  ++ +M+ +G   D  TF +    + +SG +   +E+   V  
Sbjct: 435 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLA 494

Query: 186 LGLCADVSTYKILIPAVSKAGMIDE 210
            G+  D +T   ++  V ++G +D+
Sbjct: 495 KGMLPDATTCSSILDWVCRSGKLDD 519


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 157/307 (51%), Gaps = 1/307 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  E M    +S      +++I+ + K G VD A  ++ +  +   +  +  YNSLL A
Sbjct: 28  YKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNA 87

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL-QEMSDKGFNP 120
            C+      A  L + M  KGF PD  TY+ +++  C +GK+ EA E L  +M ++G + 
Sbjct: 88  FCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSA 147

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+ GL     +E A +++ +M  +G+V D  T+N+++  +C+ G+V    + +
Sbjct: 148 NTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFF 207

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            S+   G   DV  Y  L+ A+ K G  DEA +L  +++  G+ P    Y  I+ G+ R+
Sbjct: 208 DSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARK 267

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              D+A   F +M   G  PN   Y+++++   R  +  +A   L EM+++G  P    +
Sbjct: 268 SNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTY 327

Query: 301 DLVTDGL 307
           +++ DGL
Sbjct: 328 NILLDGL 334



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 36/337 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T S II    K G V  A+E +F+K     C    + YN+L+  LC+ +    AY L+  
Sbjct: 115 TYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEE 174

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG+VPD  TY  +++  C  GK+ EA++F   M  +G++P V   + L+  L   G 
Sbjct: 175 MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY--------------YSV 183
            + A ++   +I +G++ D  T+NS++  + +   ++   EM+              YS+
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 184 ---------------------CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                                 K+G   DV TY IL+  + K  ++D+A  L   +V++G
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y+ ++ G+ +  +  DA   F  M  +   P+   + +L+    + G+  EA 
Sbjct: 355 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAK 414

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + L +MT  G  P    ++ + +GL+  G+H  A+++
Sbjct: 415 DLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRL 451



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 119/236 (50%), Gaps = 1/236 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P++ T+ +++ ++C  GK+R+  +  ++M D G +P     ++L+ G    G ++ A ++
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M+  G    + T+NSL+   CK  +++  +E++ ++ + G   DV TY  +I  + K
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 205 AGMIDEAFRLL-HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            G + EA  +L H ++E G       Y  +I G+ +    + A+    EM  KG+ P+  
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            Y  +++   R G+  EA  +   M   G +P    ++ + D L   GK D A K+
Sbjct: 186 TYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 127/273 (46%), Gaps = 1/273 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C      +  +L + C+       Y L  +M+  G  PD   Y IL++ +   G++ EA 
Sbjct: 4   CSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +EM   G  P +   + L+        ++ A ++   M ++GF  D+ T++++I  +
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 168 CKSGEVEFCVEM-YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           CK+G+V   +EM ++ + + G  A+   Y  LI  + K   I+ A++LL  +   G+ P 
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  I+ G+ R G+  +A  FF  M  +G+ P+   Y  L+    + G+  EA     
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           ++   G  P +  ++ +  GL      D AE++
Sbjct: 244 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 276



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K +E M          T + I+    + G V  A + F+   +      V+ YN LL A
Sbjct: 169 YKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDA 228

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  L + +I KG++PD  TY  ++        M EA+E  ++M   G  P 
Sbjct: 229 LYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPN 288

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++ G   A  ++ A +++ +M K G V D+ T+N L++ +CK+  V+   E++ 
Sbjct: 289 GATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 348

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   G   D+ +Y +++  + K   + +A  L   ++E    P    +  ++ G+ + G
Sbjct: 349 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAG 408

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + D+A     +M   G  P+   Y  L+    + GR ++A      M E G   +S CF
Sbjct: 409 KLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF--LSDCF 465


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 150/312 (48%), Gaps = 2/312 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS    T +++I    K G     + +F +  +  C    + YN L+  LC +     A 
Sbjct: 403 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNAL 462

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G      TY  +++A C   ++ EA+E   +M  +G +      + L+ GL
Sbjct: 463 DLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGL 522

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  ++ A +++ +M+K+G   +  T+NS++   CK G ++   ++  ++   G   DV
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV 582

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + KAG    A +LL  +   G +P P  Y P+I+ +FRR    DA   F E
Sbjct: 583 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFRE 642

Query: 253 MKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           M   G PP+   Y ++  ++C  GG   EA ++LVEM   G  P    F ++ +GL N G
Sbjct: 643 MTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702

Query: 312 KHD-LAEKIELL 322
             D L   IEL+
Sbjct: 703 MDDYLISAIELI 714



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + ++    T + +++ F + G ++ A+ V  K     C    +  N L+   C+
Sbjct: 220 LEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCK 279

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   V+  C +G +  A + +  M  +G +P V  
Sbjct: 280 MGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFT 339

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G L+ AK +VN+M+ +G + D  TFN+LI  +     +E  +++   + 
Sbjct: 340 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELT 399

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV T+ ILI A+ K G      RL   +   G  P    Y  +I  +   G+  
Sbjct: 400 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLG 459

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    +EM+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 460 NALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLI 519

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    + +  EL+E
Sbjct: 520 DGL--CKAKRIDDATELIE 536



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 124/289 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K+G +D A  + N+     C      +N+L+ AL        A  L R +
Sbjct: 339 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAREL 398

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G         +EM   G  P     ++L+  L + G L
Sbjct: 399 TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKL 458

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  ++N+M   G      T+N++I+ +CK   +E   E++  +   G+     T+  L
Sbjct: 459 GNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTL 518

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  ID+A  L+  +V++G +P    Y  I+    ++G    A      M   G 
Sbjct: 519 IDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGF 578

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 579 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 627



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 133/284 (46%), Gaps = 2/284 (0%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           V+N+ T    Q  V+  N+L+ ALC       A  ++  M   G  PD+ T+  L+  + 
Sbjct: 184 VYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFI 243

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G +  A     +M + G +P     ++L+ G    G +E A   + + I  GF  D  
Sbjct: 244 EEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQV 303

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+N+ +  +C++G V   +++   + + G   DV TY  +I  +SK G +DEA  +++ +
Sbjct: 304 TYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 363

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V+ G  P  + +  +I  +  + + ++A     E+ +KG  P+   + +LI    + G  
Sbjct: 364 VDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 423

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
                   EM   G TP    ++++ D L + GK  L   ++LL
Sbjct: 424 HLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK--LGNALDLL 465



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 143/306 (46%), Gaps = 2/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  ++  M
Sbjct: 269 TVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLM 328

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY  ++N    +G++ EA+  + +M D+G  P     + L+  L +   L
Sbjct: 329 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRL 388

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  TY IL
Sbjct: 389 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNIL 448

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G +  A  LL+ +  +G       Y  II  + ++ + ++A   F +M  +G 
Sbjct: 449 IDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGI 508

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  LI    +  R  +A   + +M + GL P +  ++ +      C + ++ + 
Sbjct: 509 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSIL--THYCKQGNIKKA 566

Query: 319 IELLEV 324
            ++LE 
Sbjct: 567 ADILET 572



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 132/291 (45%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           ++G V +A++V +          V  YN+++  L +      A  ++ +M+ +G +PD  
Sbjct: 314 QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 373

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  L+ A  S  ++ EA +  +E++ KG +P V   ++L+  L   G      ++  +M
Sbjct: 374 TFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 433

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   D  T+N LI+ +C  G++   +++   +   G      TY  +I A+ K   I
Sbjct: 434 KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRI 493

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA  +   +   G       +  +I G+ +  + DDA     +M  +G  PN   Y  +
Sbjct: 494 EEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSI 553

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +T   + G   +AA+ L  MT  G       +  + +GL   G+  +A K+
Sbjct: 554 LTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKL 604



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 5/302 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK- 81
           I+++ G  G  D    +  +      Q   ++  S + +   ++ F  A  L+   +   
Sbjct: 95  IVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDND 154

Query: 82  --GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G   D   +  L+N      K++  +    EM+ +G  P V   + L++ L  A  + 
Sbjct: 155 TFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVR 214

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +A  M+ +M   G   D  TF +L++   + G +E  + +   + + G      T  +LI
Sbjct: 215 TAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLI 274

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +++A   +   + DG +P    Y   + G+ + G    A      M  +GH 
Sbjct: 275 NGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHD 334

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  +I    + G   EA   + +M + G  P +  F+ +   L +  ++ L E +
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSS--QNRLEEAL 392

Query: 320 EL 321
           +L
Sbjct: 393 DL 394



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 11/251 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S S  T + +I+   K   +D+A E+  +      Q   + YNS+L   C+   
Sbjct: 503 MDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGN 562

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 563 IKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNP 622

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-----EVEFCVEMYYS 182
           ++Q L     L  A  +  +M + G   D  T+  +  ++C+ G       +F VEM   
Sbjct: 623 VIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEM--- 679

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
               G   + S++++L   +   GM D     +  ++E     F    A  I+G  +  +
Sbjct: 680 -VNKGFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKAK--FRESDASAIRGYLKIRK 736

Query: 243 FDDAFCFFSEM 253
           + DA   F  +
Sbjct: 737 YYDALATFGRL 747



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 112/293 (38%), Gaps = 47/293 (16%)

Query: 80  RKGFVPDK-RTYAI-----LVNAWCSSGKMREAQEFLQE-MSDKGFNPPVRGRDLLVQGL 132
           R+G  P   R YAI     L+ A         A   L   ++ + F P     + +VQ L
Sbjct: 40  RRGHRPAPLRVYAISDQDRLLAALREQSDPEAALRMLNSALAREDFAPSSAVYEEIVQKL 99

Query: 133 LNAGYLESAKQMVNKMIKQG----------FV-------------------LDLET---- 159
             AG  +  + +V +M ++G          FV                   LD +T    
Sbjct: 100 GTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQ 159

Query: 160 -----FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                FN L+  + +  +++    +Y  +   G+  DV T   LI A+ +A  +  A  +
Sbjct: 160 ADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLM 219

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  +   G  P  + +  +++G    G  + A    ++M   G  P      +LI    +
Sbjct: 220 LEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCK 279

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            GR  +A  Y+ +    G  P    ++    GL  C    ++  ++++++ L+
Sbjct: 280 MGRVEDALGYIQQEIADGFEPDQVTYNTFVHGL--CQNGHVSHALKVMDLMLQ 330


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 149/312 (47%), Gaps = 2/312 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS    T +++I    K G     + +F +  +  C    + YN L+  LC +     A 
Sbjct: 401 LSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNAL 460

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M   G      TY  +++A C   ++ EA+E   +M   G +      + L+ GL
Sbjct: 461 DLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGL 520

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  ++ A +++ +M+K+G      T+NS++   CK G+++   ++  ++   G   DV
Sbjct: 521 CKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDV 580

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + KAG    A +LL  +   G +P P  Y P+I+ +FRR    DA   F E
Sbjct: 581 VTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFRE 640

Query: 253 MKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           M   G PP+   Y ++   +C  GG   EA ++LVEM   G  P    F ++ +GL N G
Sbjct: 641 MTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700

Query: 312 KHD-LAEKIELL 322
             D L   IEL+
Sbjct: 701 MDDYLISAIELI 712



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + ++    T + +++ F + G ++ A+ V  K     C    +  N L+   C+
Sbjct: 218 LEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCK 277

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   V+  C +G +  A + +  M  +G +P V  
Sbjct: 278 MGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFT 337

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G L+ AK +VN+M+ +G + D  TFN+LI  +C    +E  +++   + 
Sbjct: 338 YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELT 397

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV T+ ILI A+ K G      RL   +   G  P    Y  +I  +   G+  
Sbjct: 398 VKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLV 457

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 458 NALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLI 517

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    + +  EL+E
Sbjct: 518 DGL--CKAKRIDDATELIE 534



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 124/289 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K+G +D A  + N+     C      +N+L+ ALC       A  L R +
Sbjct: 337 TYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLAREL 396

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G         +EM   G  P     ++L+  L + G L
Sbjct: 397 TVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKL 456

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  ++ +M   G      T+N++I+ +CK   +E   E++  +   G+     T+  L
Sbjct: 457 VNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTL 516

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  ID+A  L+  +V++G +P    Y  I+    ++G    A      M   G 
Sbjct: 517 IDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGF 576

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 577 EIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSL 625



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 141/306 (46%), Gaps = 2/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I  + K G V++A+    K  A   +   + YN+ +  LC+      A  ++  M
Sbjct: 267 TVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLM 326

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY  ++N    +G++ EA+  + +M D+G  P     + L+  L +   L
Sbjct: 327 LQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  TY IL
Sbjct: 387 EEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNIL 446

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G +  A  LL  +  +G       Y  II  + ++ + ++A   F +M   G 
Sbjct: 447 IDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGI 506

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  LI    +  R  +A   + +M + GL P +  ++ +      C + DL + 
Sbjct: 507 SRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSIL--THYCKQGDLKKA 564

Query: 319 IELLEV 324
            ++LE 
Sbjct: 565 ADILET 570



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 132/285 (46%), Gaps = 2/285 (0%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           V+N+ T    Q  V+  N+L+ ALC       A  ++  M      PD+ T+  L+  + 
Sbjct: 182 VYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFI 241

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G +  A     +M + G +P     ++L+ G    G +E A   + K I  GF  D  
Sbjct: 242 EEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQV 301

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+N+ +  +C++G V   +++   + + G   DV TY  +I  +SK G +DEA  +++ +
Sbjct: 302 TYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQM 361

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V+ G  P  + +  +I  +  + + ++A     E+ +KG  P+   + +LI    + G  
Sbjct: 362 VDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDP 421

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                   EM   G  P    ++++ D L + GK  L   ++LL+
Sbjct: 422 HLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK--LVNALDLLK 464



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 133/291 (45%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           ++G V +A++V +          V  YN+++  L +      A  ++ +M+ +G +PD  
Sbjct: 312 QNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTT 371

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  L+ A CS  ++ EA +  +E++ KG +P V   ++L+  L   G      ++  +M
Sbjct: 372 TFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEM 431

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   D  T+N LI+ +C  G++   +++   +   G      TY  +I A+ K   I
Sbjct: 432 KSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRI 491

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA  +   +   G       +  +I G+ +  + DDA     +M  +G  P+   Y  +
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +T   + G   +AA+ L  MT  G       +  + +GL   G+  +A K+
Sbjct: 552 LTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKL 602



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 3/266 (1%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           S + +   ++ F  A  L+R  +   G   D   Y  L+N      +M+  +    EM+D
Sbjct: 129 SFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTD 188

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P V   + L++ L  A  + +A  M+ +M       D  TF +L++   + G +E 
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEA 248

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + +   + + G      T  +LI    K G +++A   +   + DG +P    Y   + 
Sbjct: 249 ALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVH 308

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            + + G    A      M  +GH P+   Y  +I    + G   EA   + +M + G  P
Sbjct: 309 CLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 368

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIEL 321
            +  F+ +   L  C ++ L E ++L
Sbjct: 369 DTTTFNTLIVAL--CSQNRLEEALDL 392



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 11/257 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +S S  T + +I+   K   +D+A E+  +      Q   + YNS+L   C+   
Sbjct: 501 MDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGD 560

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 561 LKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNP 620

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-----EVEFCVEMYYS 182
           ++Q L     L  A  +  +M + G   D  T+  +   +C+ G       +F VEM   
Sbjct: 621 VIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNK 680

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
               G   + S++++L   +   GM D     +  ++E     F       I+G  +  +
Sbjct: 681 ----GFMPEFSSFRMLAEGLLNLGMDDYLISAIELIIEKAK--FRESDVSAIRGYLKIRK 734

Query: 243 FDDAFCFFSEMKIKGHP 259
           + DA   F  +    +P
Sbjct: 735 YYDALATFGRLLEINNP 751



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF-S 251
           + Y+ +I  +  AG  D    L+  +  +GH+    +    ++   R  +FDDA     +
Sbjct: 90  AVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRN 149

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           ++   G   +  VY  L+ +   G R     +   EMT+ G+ P     + +   L  C 
Sbjct: 150 QLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKAL--CR 207

Query: 312 KHDLAEKIELLE 323
            H +   + +LE
Sbjct: 208 AHQVRTAVLMLE 219


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 43/357 (12%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK +E +K  N+ + P T S++I  + K G+ + AVE F K   F C+  V  YNS+L  
Sbjct: 116 WKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHV 175

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           + + ++F  A A+  +M++  + P++ T+ IL+N  C +GK  +A +   EM+ KG  P 
Sbjct: 176 MVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPN 235

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-------- 173
                +++ GL  A   +   +++N M   G   D  T N+L++  CK G++        
Sbjct: 236 TMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295

Query: 174 -------------------------------EFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                                          E+C +M+    K G+  DV  Y ILI   
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMF----KAGIEPDVVLYTILIRGF 351

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + GM+D A  +L+++ + G  P    Y  +IKG    G  D A     E+      P  
Sbjct: 352 CEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTS 411

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             YT+LI    R G   EA     +M  +G +P    F+ + DGL   G+ + A  +
Sbjct: 412 CTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHL 468



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 1/288 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N + +  T  +++    K+G  D+A+++F++ T        ++Y  +L  LC+ K 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKR 251

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               + L+  M   G  PD  T   L++ +C  G++ EA   LQ    +G+   ++G   
Sbjct: 252 TDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSS 311

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  A   +  ++   KM K G   D+  +  LI   C+ G V++ + M   + + G
Sbjct: 312 LIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG 371

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  LI      G++D+A  L   + ++   P    Y  +I GM R G  D+A 
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEAR 431

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F++M+  G  P+   +  LI    + G   EA +   +M E+G  P
Sbjct: 432 QIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EIGKNP 478



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 103/210 (49%), Gaps = 15/210 (7%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+LY  L+   CEV +   A  ++  M ++G  PD   Y  L+  +C  G + +A+    
Sbjct: 341 VVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQL 400

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+S     P      +L+ G+   G L+ A+Q+ N+M   G    + TFN+LI+ +CK+G
Sbjct: 401 EISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460

Query: 172 EVEFCVEMYYSV---------CKLGLCADVSTYKILIPA--VSKAGMIDEAFRLLHNLVE 220
           E+E    ++Y +          +L   AD    +++  A    +    ++AFR+L  +V+
Sbjct: 461 ELEEARHLFYKMEIGKNPSLFLRLSQGAD----RVMDTANGFHRVDREEDAFRVLDQMVK 516

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +G  P  ++Y  ++    R+G+   AF  +
Sbjct: 517 NGCTPSSAVYKCLMTWSCRKGKLSVAFSLW 546



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 126/334 (37%), Gaps = 45/334 (13%)

Query: 9   KPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K +   + P  +  +++I  F + G+VD A+ + N  T          YN+L+   C+V 
Sbjct: 331 KMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           L   A +L   + +    P   TY IL+   C +G + EA++   +M + G +P +   +
Sbjct: 391 LLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFN 450

Query: 127 LLVQGLLNAGYLESAKQM------------------------------------------ 144
            L+ GL  AG LE A+ +                                          
Sbjct: 451 ALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDREEDAFRV 510

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +++M+K G       +  L+   C+ G++     ++    +     +  T K+      K
Sbjct: 511 LDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEK 570

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +++A R L  +    +    + Y   + G+ +  + ++A   F  +K      N P 
Sbjct: 571 -GELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPS 629

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             MLI    + G    A +  +   E G   + R
Sbjct: 630 CVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPR 663


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 160/357 (44%), Gaps = 43/357 (12%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK +E +K  N+ + P T S++I  + K G+ + AVE F K   F C+  V  YNS+L  
Sbjct: 116 WKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHV 175

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           + + ++F  A A+  +M++  + P++ T+ IL+N  C +GK  +A +   EM+ KG  P 
Sbjct: 176 MVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPN 235

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-------- 173
                +++ GL  A   +   +++N M   G   D  T N+L++  CK G++        
Sbjct: 236 TMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQ 295

Query: 174 -------------------------------EFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                                          E+C +M+    K G+  DV  Y ILI   
Sbjct: 296 LFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMF----KAGIEPDVVLYTILIRGF 351

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + GM+D A  +L+++ + G  P    Y  +IKG    G  D A     E+      P  
Sbjct: 352 CEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTS 411

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             YT+LI    R G   EA     +M  +G +P    F+ + DGL   G+ + A  +
Sbjct: 412 CTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHL 468



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 15/288 (5%)

Query: 9   KPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K +   + P  +  +++I  F + G+VD A+ + N  T          YN+L+   C+V 
Sbjct: 331 KMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           L   A +L   + +    P   TY IL+   C +G + EA++   +M + G +P +   +
Sbjct: 391 LLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFN 450

Query: 127 LLVQGLLNAGYLESAKQMVNKM-----------IKQGF--VLDLETFNSLIETICKSGEV 173
            L+ GL  AG LE A+ +  KM           + QG   V+D  +  +++E +C+SG +
Sbjct: 451 ALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLI 510

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++   +   G+  D+ TY +LI    KA  I+ AF+L   L   GH P    Y  +
Sbjct: 511 LKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTL 570

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           I G  R  + +DAF    +M   G  P+  VY  L+T   R G+   A
Sbjct: 571 IDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVA 618



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 139/291 (47%), Gaps = 15/291 (5%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+LY  L+   CEV +   A  ++  M ++G  PD   Y  L+  +C  G + +A+    
Sbjct: 341 VVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQL 400

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+S     P      +L+ G+   G L+ A+Q+ N+M   G    + TFN+LI+ +CK+G
Sbjct: 401 EISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAG 460

Query: 172 EVEFCVEMYYSV---------CKLGLCAD----VSTYKILIPAVSKAGMIDEAFRLLHNL 218
           E+E    ++Y +          +L   AD     ++ + ++  + ++G+I +A++LL  L
Sbjct: 461 ELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQL 520

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            + G  P    Y  +I G  +    + AF  F E+++KGH P+   Y  LI    R  R 
Sbjct: 521 ADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDRE 580

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            +A   L +M + G TP S  +  +     +C K  L+    L    LRS+
Sbjct: 581 EDAFRVLDQMVKNGCTPSSAVYKCLMTW--SCRKGKLSVAFSLWLKYLRSL 629



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 132/288 (45%), Gaps = 1/288 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N + +  T  +++    K+G  D+A+++F++ T        ++Y  +L  LC+ K 
Sbjct: 192 MLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKR 251

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               + L+  M   G  PD  T   L++ +C  G++ EA   LQ    +G+   ++G   
Sbjct: 252 TDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSS 311

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  A   +  ++   KM K G   D+  +  LI   C+ G V++ + M   + + G
Sbjct: 312 LIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG 371

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  LI      G++D+A  L   + ++   P    Y  +I GM R G  D+A 
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEAR 431

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F++M+  G  P+   +  LI    + G   EA +   +M E+G  P
Sbjct: 432 QIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM-EIGKNP 478



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/330 (20%), Positives = 125/330 (37%), Gaps = 53/330 (16%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC--------------- 63
           T +++I    ++GL+D A ++FN+     C   ++ +N+L+  LC               
Sbjct: 413 TYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM 472

Query: 64  ---------------------------------EVKLFHGAYALIRRMIRKGFVPDKRTY 90
                                            E  L   AY L+ ++   G VPD  TY
Sbjct: 473 EIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTY 532

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L+N +C +  +  A +  +E+  KG +P       L+ G       E A +++++M+K
Sbjct: 533 NVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVK 592

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G       +  L+   C+ G++     ++    +     +  T K+      K G +++
Sbjct: 593 NGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLKLAEEHFEK-GELEK 651

Query: 211 AFRLL--HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           A R L   N   +  +  P  Y   + G+ +  + ++A   F  +K      N P   ML
Sbjct: 652 AVRCLLEMNFKLNNFEIAP--YTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVML 709

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           I    + G    A +  +   E G   + R
Sbjct: 710 INGLCKDGNLEMAVDIFLYTLEKGFMLMPR 739


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 156/328 (47%), Gaps = 2/328 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK  + M  + +     T + +I    K G V +A  V  +     C   ++ YN ++  
Sbjct: 200 WKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGG 259

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC  +L   A  L R M+ KG VPD  TY IL+N +C   + REA+  L EM D G  P 
Sbjct: 260 LCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPE 319

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ G +  G +E A ++ ++M+  G   +L  +N+L+  +CK+G++E  +E+  
Sbjct: 320 PITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 379

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  TY +LI    +   +  AF LL  + +    P    Y+ II G+ R G
Sbjct: 380 EMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                     EM + G  PN  VYT L+T   + GR  E+   L  M E G+ P   C++
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 302 LVTDGLKNCGKHDLAEK--IELLEVSLR 327
            +  G     + + A    +E+LE  LR
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLR 527



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKPY-NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K +E+M+      V P  QT SL+IE   +   +  A E+ ++         VL Y+ 
Sbjct: 371 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 430

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC      G  A++R M+  G  P+   Y  L+ A    G++ E++  L+ M ++G
Sbjct: 431 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 490

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G   A  +E A+  + +M+++    +  T+ + I+   K+GE+E   
Sbjct: 491 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 550

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             +  +   G+  +V  Y  LI    K G + EAF +   ++          Y+ +I G+
Sbjct: 551 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGL 610

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G+  +AF  FSE++ KG  PN   Y  LI+   + G   +A+  L EM   G+ P  
Sbjct: 611 SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDI 670

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++++ DGL   G+ + A+ +
Sbjct: 671 VTYNILIDGLCKAGEIERAKNL 692



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 2/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ MK   L+ +  T S+II    + G +     +  +      +   ++Y +L+ A
Sbjct: 410 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +      +  ++ RM  +G +PD   Y  L+  +C + +M EA+ +L EM ++   P 
Sbjct: 470 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 529

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                  + G   AG +E A +  N+M+  G + ++  + +LIE  CK G V     ++ 
Sbjct: 530 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 589

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  DV TY +LI  +S+ G + EAF +   L E G  P    Y  +I G  ++G
Sbjct: 590 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 649

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             D A     EM IKG  P+   Y +LI    + G    A N   ++   GLTP    + 
Sbjct: 650 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 709

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            + DG   C   +     +LLE
Sbjct: 710 AMVDGY--CKSKNPTAAFQLLE 729



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  +  T    I+ + K G ++ A   FN+  +      V +Y +L+   C+      A+
Sbjct: 526 LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAF 585

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++ R ++ +  + D +TY++L++    +GKM EA     E+ +KG  P     + L+ G 
Sbjct: 586 SVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGS 645

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A Q++ +M  +G   D+ T+N LI+ +CK+GE+E    ++  +   GL  + 
Sbjct: 646 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 705

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++    K+     AF+LL  ++  G  P   +Y  I+    +  +F+ A   F E
Sbjct: 706 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE 765

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG        T++   C + G+  EA + L EM E    P    +  + D   NC  
Sbjct: 766 MLEKGFASTVSFNTLIEGYC-KSGKLQEANHLLEEMIEKQFIPNHVTYTSLID--HNCKA 822

Query: 313 HDLAEKIEL-LEVSLRSV 329
             + E   L LE+  R+V
Sbjct: 823 GMMGEAKRLWLEMQERNV 840



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 38/338 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + ++    K G V+ +  +  +         V  YNSL+   C+ K    A   +  M+ 
Sbjct: 464 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 523

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-------------------- 120
           +   P+  TY   ++ +  +G+M  A  +  EM   G  P                    
Sbjct: 524 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 583

Query: 121 ---------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
                           V+   +L+ GL   G +  A  + +++ ++G + +  T+NSLI 
Sbjct: 584 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 643

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             CK G V+   ++   +C  G+  D+ TY ILI  + KAG I+ A  L  ++   G  P
Sbjct: 644 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 703

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               YA ++ G  +      AF    EM ++G PP+  +Y +++  C +  +F +A +  
Sbjct: 704 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 763

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM E G    +  F+ + +G    GK  L E   LLE
Sbjct: 764 QEMLEKGFAS-TVSFNTLIEGYCKSGK--LQEANHLLE 798



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%), Gaps = 1/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A  +F+           + Y +++   C+ K    A+ L+  M
Sbjct: 672 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 731

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD   Y +++N  C   K  +A +  QEM +KGF   V   + L++G   +G L
Sbjct: 732 LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKL 790

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +MI++ F+ +  T+ SLI+  CK+G +     ++  + +  +     TY  L
Sbjct: 791 QEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 850

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + E   L   +V  G +P    Y  +I    R G   +A     E+ +KG 
Sbjct: 851 LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 910

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           P +   Y  LI    +   F E    L E+ E G         ++  G +  G  D A +
Sbjct: 911 PMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAE 970

Query: 319 I 319
           +
Sbjct: 971 V 971



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 2/265 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+           A+ +   M+  G   +   +  L+N  C +GKM +A E +QE
Sbjct: 321 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 380

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M +KG  P  +   LL++G      +  A +++++M K+     + T++ +I  +C+ G 
Sbjct: 381 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 440

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++    +   +   GL  +   Y  L+ A +K G ++E+  +L  + E G  P    Y  
Sbjct: 441 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 500

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  +  + ++A  +  EM  +   PN   Y   I    + G    A  Y  EM   G
Sbjct: 501 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 560

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAE 317
           + P    +  + +G  +C + ++ E
Sbjct: 561 VLPNVGIYTALIEG--HCKEGNVTE 583



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 99/235 (42%)

Query: 55   YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
            +N+L+   C+      A  L+  MI K F+P+  TY  L++  C +G M EA+    EM 
Sbjct: 777  FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 836

Query: 115  DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            ++   P  +    L+ G  N G +     +  +M+ +G   D  T+  +I+  C+ G V 
Sbjct: 837  ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVM 896

Query: 175  FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++   +   G+   V+ Y  LI A+ K     E  +LL+ + E G +      + I 
Sbjct: 897  EACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIA 956

Query: 235  KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
            +G    G  D+A      M   G   N      L+     G    ++ N L +M 
Sbjct: 957  RGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLKQMA 1011



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 134/328 (40%), Gaps = 55/328 (16%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK--------GFV----------PDKRTY 90
           QQ + + ++L   LC    +  A  LI+ +IR         G +          P+   +
Sbjct: 89  QQDLDVLSALAVNLCNSNWYGPASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIF 148

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L++++   G + EA        +  F P +   + L+  LL    +E   ++ + M  
Sbjct: 149 DMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCA 208

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              + D+ T+ ++I   CK G V+    +   + + G   ++ TY ++I  + +A ++DE
Sbjct: 209 HKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDE 268

Query: 211 AFRLLHNLVED-----------------------------------GHKPFPSLYAPIIK 235
           A  L  ++V+                                    G KP P  Y  +I 
Sbjct: 269 AIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALID 328

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  R+G  + AF    EM   G   N  ++  L+    + G+  +A   + EM E G+ P
Sbjct: 329 GFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEP 388

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            S+ + L+ +G  +C   ++A   ELL+
Sbjct: 389 DSQTYSLLIEG--HCRGQNMARAFELLD 414



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 88/201 (43%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I+   K G++  A  ++ +    N       Y SLL     +       AL   M
Sbjct: 811  TYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEM 870

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + KG  PDK TY ++++A+C  G + EA +   E+  KG    V   D L+Q L      
Sbjct: 871  VAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEF 930

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++N++ + GF L L T + +      +G ++   E+  S+ K G  ++ ++   L
Sbjct: 931  FEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDL 990

Query: 199  IPAVSKAGMIDEAFRLLHNLV 219
            +         +++  LL  + 
Sbjct: 991  VDGNQNGANSEDSDNLLKQMA 1011


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 156/341 (45%), Gaps = 37/341 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I        ++ A+++  + T       V  +N L+ ALC+V   H A  L   M
Sbjct: 373 TFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEM 432

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRGR------ 125
              G  PD+ TY IL++  CSSGK+ +A + L+EM   G       +N  + G       
Sbjct: 433 KSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRI 492

Query: 126 ----------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                                 + L+ GL NA  ++ A ++V++MI +G   +  T+NS+
Sbjct: 493 EEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSI 552

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +   CK G +    ++  ++   G   DV TY  LI  + KA     A +LL  +   G 
Sbjct: 553 LTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGM 612

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAA 282
           KP P  Y P+I+ +FR     DA   F EM   G PP+   Y ++   +C  GG   EA 
Sbjct: 613 KPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAF 672

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD-LAEKIELL 322
           ++LVEM + G  P    F ++ +GL N G  D L   IEL+
Sbjct: 673 DFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLIRAIELI 713



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 146/315 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M   +++    T + ++E F + G ++ A+ +  + +   C    +  N L+   C+
Sbjct: 219 LEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCK 278

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ T++  VN  C +G +  A + L  M  +G  P V  
Sbjct: 279 LGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYT 338

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++  L N G LE AK +VN+M+  G + D  TFN+LI  +C   ++E  +++   + 
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELT 398

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  +V T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 399 VKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLA 458

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     EM++ G P +   Y  +I    +  R  EA     +M   G+   +  F+ + 
Sbjct: 459 KALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLI 518

Query: 305 DGLKNCGKHDLAEKI 319
           DGL N  + D A ++
Sbjct: 519 DGLCNAERIDDAAEL 533



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 131/308 (42%), Gaps = 2/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I     +G ++ A  + N+     C      +N+L+ ALC       A  L R +
Sbjct: 338 TYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLAREL 397

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  T+ IL+NA C  G    A    +EM   G  P     ++L+  L ++G L
Sbjct: 398 TVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKL 457

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ +M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 458 AKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTL 517

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  ID+A  L+  ++ +G +P    Y  I+    ++G    A      M   G 
Sbjct: 518 IDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF 577

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNCGKHDLA 316
             +   Y  LI    +  R   A   L  M   G+ P  + ++ V   L   N G+  L+
Sbjct: 578 EVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALS 637

Query: 317 EKIELLEV 324
              E+ EV
Sbjct: 638 LFREMTEV 645



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 143/301 (47%), Gaps = 5/301 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++ E  K  L+++A   + + ++   +  V+ +N+++ ALC  +    A  ++  M    
Sbjct: 170 VLAEGSKIKLLESA---YTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCD 226

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD+ T+  L+  +   G +  A      MS+ G +P     ++L+ G    G +  A 
Sbjct: 227 VAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDAL 286

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             + + I  GF  D  TF++ +  +C++G V+  +++   + + G   DV TY  +I  +
Sbjct: 287 GYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCL 346

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G ++EA  +++ +V+ G  P  + +  +I  +    Q ++A     E+ +KG  PN 
Sbjct: 347 CNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNV 406

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +LI    + G    A     EM   G TP    ++++ D L + GK  LA+ ++LL
Sbjct: 407 YTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK--LAKALDLL 464

Query: 323 E 323
           +
Sbjct: 465 K 465



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   +      AV +  + ++ +       + +L+    E      A  L  RM
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   T  +L+N +C  G++ +A  ++Q+    GF P        V GL   G++
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHV 317

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++  M+++G   D+ T++++I  +C +GE+E    +   +   G   D +T+  L
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTL 377

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+     ++EA  L   L   G  P    +  +I  + + G    A   F EMK  G 
Sbjct: 378 IVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGC 437

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +LI      G+  +A + L EM   G    +  ++ + DGL  C +  + E 
Sbjct: 438 TPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGL--CKRRRIEEA 495

Query: 319 IELLE 323
            E+ +
Sbjct: 496 EEVFD 500



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 127/316 (40%), Gaps = 3/316 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L +   L+ S      II + G  G  D    +  +      +  + L  S + +   ++
Sbjct: 80  LARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQ 139

Query: 67  LFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           LF  A+ L+   +   G   +   Y  L+       K++  +    EMS +G  P V   
Sbjct: 140 LFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTF 199

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++  L  A    +A  M+ +M       D  TF +L+E   + G +E  + +   + +
Sbjct: 200 NTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSE 259

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +G      T  +LI    K G + +A   +   + DG +P    ++  + G+ + G  D 
Sbjct: 260 MGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDH 319

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M  +G  P+   Y+ +I      G   EA   + +M + G  P +  F+ +  
Sbjct: 320 ALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIV 379

Query: 306 GLKNCGKHDLAEKIEL 321
            L  C ++ L E ++L
Sbjct: 380 AL--CTENQLEEALDL 393



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E ++P N+     T + I+  + K G +  A ++    TA   +  V+ Y +L+  LC+ 
Sbjct: 540 EGLQPNNV-----TYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKA 594

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A  L+R M  KG  P  + Y  ++ +       R+A    +EM++ G  P     
Sbjct: 595 RRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTY 654

Query: 126 DLLVQGL-LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
            ++ +GL    G ++ A   + +M   GF+ +  +F  L E +   G  ++ +
Sbjct: 655 KIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYLI 707


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 141/273 (51%), Gaps = 1/273 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+F +     C      YN L+ +LC       A +L++ M   G   +  TY  L++
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C + ++ EA+E   EM  +G +  V   + L+ GL     +E A Q++++M+ +G   
Sbjct: 500 GFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKP 559

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+NSL+   C++G+++   ++  ++   G   D  TY  LI  +SKAG ++ A RLL
Sbjct: 560 DKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLL 619

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGR 274
             +   G    P  Y P+IK +FR  +  +A   F EM  KG PP+   Y ++   +C  
Sbjct: 620 RTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSG 679

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           GG   EA ++LVEMT+ G  P    F ++ +GL
Sbjct: 680 GGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGL 712



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y LS   +T + +++ F + G ++ A+ +  +  A  C    +  N L+   C+
Sbjct: 234 MEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCK 293

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                   + I  M  +GF PD+ T+  LVN  C  G ++ A E L  M  +GF+P +  
Sbjct: 294 EGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFT 353

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL   G +E A +++N+MI + F  +  T+N+LI T+CK  +VE   E+   + 
Sbjct: 354 YNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLT 413

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+  LI  +        A  L   +   G  P    Y  +I  +  RG+ +
Sbjct: 414 SKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLE 473

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM+  G   N   Y  LI    +  R  EA     EM   G++     ++ + 
Sbjct: 474 EALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLI 533

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    + E  +L++
Sbjct: 534 DGL--CKNRRVEEAAQLMD 550



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 18/299 (6%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L++EE G +GL  +                   + +L+    E    +GA  +  +M+  
Sbjct: 232 LMMEEMGSYGLSPDEKT----------------FTTLMQGFIEEGNMNGALRIREQMVAA 275

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G      T  +LV+ +C  G++ E   F+ EMS++GF P     + LV GL   G+++ A
Sbjct: 276 GCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHA 335

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++++ M+++GF  D+ T+NSLI  +CK GEVE  VE+   +       +  TY  LI  
Sbjct: 336 LEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLIST 395

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K   ++EA  L   L   G  P    +  +I+G+        A   F EMK KG  P+
Sbjct: 396 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 262 RPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              Y MLI ++C R GR  EA + L EM   G +     ++ + DG     + + AE+I
Sbjct: 456 EFTYNMLIDSLCSR-GRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEI 513



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 141/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G V +A+E+ +          +  YNSL+F LC++     A  ++ +M
Sbjct: 318 TFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQM 377

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I + F P+  TY  L++  C   ++ EA E  + ++ KG  P V   + L+QGL      
Sbjct: 378 ILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNH 437

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G   D  T+N LI+++C  G +E  + +   +   G   +V TY  L
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   I+EA  +   +   G       Y  +I G+ +  + ++A     +M ++G 
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGL 557

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   R G   +AA+ +  MT  G  P S  +  +  GL   G+ +LA +
Sbjct: 558 KPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASR 617

Query: 319 I 319
           +
Sbjct: 618 L 618



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+ AVE+ N+    +     + YN+L+  LC+      A  L R +  KG +PD  
Sbjct: 363 KLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVC 422

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  L+   C +   R A E  +EM  KG +P     ++L+  L + G LE A  ++ +M
Sbjct: 423 TFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEM 482

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   ++ T+N+LI+  CK+  +E   E++  +   G+  +V TY  LI  + K   +
Sbjct: 483 ESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRV 542

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA +L+  ++ +G KP    Y  ++    R G    A      M   G  P+   Y  L
Sbjct: 543 EEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTL 602

Query: 269 ITMCGRGGRFVEAANYL---VEMTEMGLTP 295
           I    + GR VE A+ L   V++  M L P
Sbjct: 603 ILGLSKAGR-VELASRLLRTVQLKGMVLAP 631



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 143/324 (44%), Gaps = 3/324 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLL 59
           M + ++ MK     +   T  ++IE + K  L D AV V +     F  +     YN LL
Sbjct: 124 MRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLL 183

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             L +         +  RM+ +G  PD  T+ IL+ A C + ++R A   ++EM   G +
Sbjct: 184 NVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLS 243

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +    L+QG +  G +  A ++  +M+  G      T N L+   CK G +E  +  
Sbjct: 244 PDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSF 303

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D  T+  L+  + + G +  A  +L  ++++G  P    Y  +I G+ +
Sbjct: 304 IDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCK 363

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ ++A    ++M ++   PN   Y  LI+   +  +  EA      +T  G+ P    
Sbjct: 364 LGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 423

Query: 300 FDLVTDGLKNCGKHDLAEKIELLE 323
           F+ +  GL     H LA  +EL E
Sbjct: 424 FNSLIQGLCLTNNHRLA--MELFE 445



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEM 113
           YN ++ AL   K    A  L R M+ KG  PD  TY ++    CS G  + EA +FL EM
Sbjct: 634 YNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEM 693

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
           +DKGF P      +L +GL      ++  ++VN+++KQ    D E
Sbjct: 694 TDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSE 738


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 1/308 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T S I++   K G VD+A  +     +  C   V+ Y+SLL  LC+      A AL++RM
Sbjct: 950  TYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM 1009

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             R G  P+  TY  +++  C  G++ EA   L+EM D G  P V    +L+      G  
Sbjct: 1010 TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 1069

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            E A  +V  M+++G+V +L T+NSL++  CK  EVE   ++  S+ + G   +V +Y  +
Sbjct: 1070 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 1129

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  + KA  + E   LL  ++ +   P    +  II  M +  + D A+  F+ ++  G 
Sbjct: 1130 IAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGC 1189

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y  L+    +  RF +A   L EMT + G +P    ++ V DGL    + D A 
Sbjct: 1190 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAY 1249

Query: 318  KIELLEVS 325
            K+ L  +S
Sbjct: 1250 KLFLQMLS 1257



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 134/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I    K   VD A  V +K     CQ  V+ Y +L+   C V    GA  L+R+M
Sbjct: 302 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G+ P+  TY  +++ +C    M  A + LQ M   G  P       ++ G   AG L
Sbjct: 362 TERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKL 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ +MI++G   D+   ++LI+ +CK+  ++   E+      +    DV  Y IL
Sbjct: 422 REAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSIL 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ KA  + EA   L  +V++   P    Y  ++ G+ +  + +DAF  F  M+  G 
Sbjct: 482 IHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y+++I    +      A   L  M E    P    +  + +GL   G  D A
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599



 Score =  127 bits (319), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 153/336 (45%), Gaps = 35/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +++ F + G +D AVE+  K T    +   + YN+++   C       A+ +++ M
Sbjct: 337 TYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+ G  PD   Y+ +++ +C +GK+REA + L++M  +G  P V     L+  L  A  +
Sbjct: 397 IQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAI 456

Query: 139 ESAKQMV-----------------------------------NKMIKQGFVLDLETFNSL 163
           +SA++++                                   + M+K     D+ T+NS+
Sbjct: 457 DSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSV 516

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           ++ +CKS  +     ++  +   G+  DV TY I+I +  K   +D AF++L  + E   
Sbjct: 517 VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKC 576

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y+ +I G+ + G  D AF  F EM   G  PN   Y  LI    +  +  +AA 
Sbjct: 577 VPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAE 636

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            L  M +   TP S  +  + +GL N  + + A ++
Sbjct: 637 MLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRV 672



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 16/317 (5%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            +E M   N      T + II+   K   VD A E+FN      C   ++ YNSL+  LC+
Sbjct: 1146 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 65   VKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             + F  A  L+R M RK G  PD  TY  +++  C S ++  A +   +M   G  P   
Sbjct: 1206 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 1265

Query: 124  GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               +++  L    +++ A  ++  M+K GF     T+ +LI+  CK+G ++  +E+   +
Sbjct: 1266 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 1325

Query: 184  CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
               G   DV T+ I I  +SK G + +A  LL  ++  G  P    Y  ++KG       
Sbjct: 1326 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLT 1385

Query: 244  DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +DA   F  M+  G  P+   YT L+      G  V+  +Y   + E+  + +   F L 
Sbjct: 1386 EDAVDLFEVMRQCGCEPDNATYTTLV------GHLVDKKSYKDLLAEVSKSMVDTGFKL- 1438

Query: 304  TDGLKNCGKHDLAEKIE 320
                     H+L+ K+E
Sbjct: 1439 --------NHELSSKLE 1447



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 154/327 (47%), Gaps = 3/327 (0%)

Query: 3    KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
            + +E M     S +  T S ++    K G +D A  +  + T   C   ++ YN+++   
Sbjct: 969  RLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 63   CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            C++     AY L+  M+  G  P+  TY +L++A+C  GK  +A   ++ M +KG+ P +
Sbjct: 1029 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 1088

Query: 123  RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               + L+        +E A Q+++ MI++G V ++ ++N++I  +CK+ +V   V +   
Sbjct: 1089 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 1148

Query: 183  VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
            +       D+ T+  +I A+ K   +D A+ L + + E G  P    Y  ++ G+ +  +
Sbjct: 1149 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208

Query: 243  FDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            FD A     EM  K G  P+   Y  +I    +  R   A    ++M   GL P    + 
Sbjct: 1209 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 1268

Query: 302  LVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +V   L  C    + E   +LE+ L++
Sbjct: 1269 IVISSL--CKWRFMDEANNVLELMLKN 1293



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 141/308 (45%), Gaps = 3/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F + G +  A E+F++      +    ++ S+L  LC+      A    R M
Sbjct: 163 TYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM 222

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY  ++N    S ++ +A   L+EM D GF P V   + ++ G   A  +
Sbjct: 223 -SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRV 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A  ++ +M+ +G   D+ ++ ++I  +CK  +V+    +   + + G   +V TY  L
Sbjct: 282 ENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTL 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G +D A  L+  + E G++P    Y  I+    RR   + A      M   G 
Sbjct: 342 VDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGC 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   Y+ +I+   + G+  EA + L +M   G  P   C   + D L      D A+ 
Sbjct: 402 PPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ- 460

Query: 319 IELLEVSL 326
            ELL +S+
Sbjct: 461 -ELLRMSI 467



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 130/277 (46%), Gaps = 3/277 (1%)

Query: 48   CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
            C   +  +  L+  LC       AY L++ M R G   +   + +++   CS+ K+  A 
Sbjct: 873  CSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 108  EFLQEMSDKGFNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E  +EM + G  PP V     +V  L+ +G ++ A ++V  M+ +G   ++ T++SL+  
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 167  ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            +CK+G+++    +   + + G   ++ TY  +I    K G IDEA+ LL  +V+ G +P 
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPN 1052

Query: 227  PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
               Y  ++    + G+ +DA      M  KG+ PN   Y  L+ M  +      A   L 
Sbjct: 1053 VVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLS 1112

Query: 287  EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             M + G  P    ++ V  GL  C    + E + LLE
Sbjct: 1113 SMIQKGCVPNVVSYNTVIAGL--CKATKVHEGVLLLE 1147



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 3/307 (0%)

Query: 13   LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
            L  SP   T +++I    + G +  A E+  +       Q V+L+N ++  LC  +    
Sbjct: 871  LCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDS 930

Query: 71   AYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L + M   G  P D  TY+ +V++   SGK+ +A   +++M  KG +P V     L+
Sbjct: 931  ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLL 990

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             GL  AG L+ A  ++ +M + G   ++ T+N++I+  CK G ++    +   +   G  
Sbjct: 991  HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 1050

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             +V TY +L+ A  K G  ++A  L+  +VE G+ P    Y  ++    ++ + + A   
Sbjct: 1051 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQL 1110

Query: 250  FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             S M  KG  PN   Y  +I    +  +  E    L +M      P    F+ + D +  
Sbjct: 1111 LSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCK 1170

Query: 310  CGKHDLA 316
              + D+A
Sbjct: 1171 TYRVDIA 1177



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 134/299 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II  F K G +  A ++  +     C+  V   ++L+ ALC+      A  L+R  I 
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIG 468

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD   Y+IL++A C + ++ EA+ +L  M      P V   + +V GL  +  +  
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  + ++M   G + D+ T++ +I + CK   ++   +M   + +     DV TY  LI 
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + KAG +D+AF +   ++  G  P    Y  +I G+ +  + + A      M+ +   P
Sbjct: 589 GLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTP 648

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   YT LI       R  EA   L EM + G  P    +  +   L+     +L E++
Sbjct: 649 DSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQL 707



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 120/250 (48%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           LS +I+   K   +D+A E+       +C   V+ Y+ L+ ALC+ K    A + +  M+
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMV 502

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +    PD  TY  +V+  C S ++ +A      M   G  P V    +++        L+
Sbjct: 503 KNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLD 562

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           SA +M+ +M +   V D+ T+++LI  +CK+G V+   +++  +   G   ++ TY  LI
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K   +++A  +L  + +    P    Y  +I G+    + ++A+    EMK KG  
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL 682

Query: 260 PNRPVYTMLI 269
           P+R  Y  L+
Sbjct: 683 PDRMTYGTLL 692



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 154/366 (42%), Gaps = 51/366 (13%)

Query: 6    ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            E+ +    S    T + +I+   K   VD A ++F +  +       + Y+ ++ +LC+ 
Sbjct: 1218 EMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKW 1277

Query: 66   KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +    A  ++  M++ GF P   TY  L++ +C +G + +A E LQ +  KG  P V   
Sbjct: 1278 RFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTF 1337

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV-- 183
             + +  L   G L  A +++  M++ G V D  T+N+L++  C +   E  V+++  +  
Sbjct: 1338 SIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQ 1397

Query: 184  --CK---------LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----------- 221
              C+         +G   D  +YK L+  VSK+ M+D  F+L H L              
Sbjct: 1398 CGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKS-MVDTGFKLNHELSSKLEASIEVEADV 1456

Query: 222  ----------GHKPFPSLYAPIIKGMFRRG---------------QFDDAFCFFSEMKIK 256
                      G    P     + +GM +R                Q + AF  +  M ++
Sbjct: 1457 RLGCAIVDMFGKCGSPQDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLE 1516

Query: 257  GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   +  L+TMC   G    A +  V ++ + GL P    F  V D L   G  + 
Sbjct: 1517 GVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNE 1576

Query: 316  AEKIEL 321
            AE + L
Sbjct: 1577 AEDLML 1582



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 128/309 (41%), Gaps = 38/309 (12%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  +   N LL  L +   +  A+ L R  I   +  D  TY+ L++ +  +GK+  A E
Sbjct: 123 QHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYE 182

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGY------------------------------- 137
              EM+ KG          +++GL +AG                                
Sbjct: 183 LFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSK 242

Query: 138 ---LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              L+ A +++ +M+  GF  ++ ++N+++   CK+  VE  + +   +   G   DV +
Sbjct: 243 SDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVS 302

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  +I  + K   +DEA R++  +++ G +P    Y  ++ G  R G  D A     +M 
Sbjct: 303 YTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMT 362

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-- 312
            +G+ PN   Y  ++ +  R      A   L  M + G  P +  +  +  G    GK  
Sbjct: 363 ERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLR 422

Query: 313 --HDLAEKI 319
             HDL E++
Sbjct: 423 EAHDLLEQM 431



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 2/207 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K   +++A  +F++  A      V+ Y+ ++ + C+      A+ ++ RM
Sbjct: 512 TYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERM 571

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                VPD  TY+ L+N  C +G + +A +  QEM   G  P +   + L+ GL     +
Sbjct: 572 KEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKV 631

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +M+  M KQ    D  T+  LI  +C +  +E    +   +   G   D  TY  L
Sbjct: 632 EQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTL 691

Query: 199 IPAVSKAGMIDEAFRLLHNL--VEDGH 223
           + A+ K   ++   +LL  +   E+G 
Sbjct: 692 LRALQKTNNLELVEQLLKEMEATEEGQ 718



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 71/147 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K +E MK         T S +I    K G VD A +VF +     C   ++ YN+L+  
Sbjct: 565 FKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDG 624

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC++     A  ++  M ++   PD  TY  L+N  C++ ++ EA   L+EM DKG  P 
Sbjct: 625 LCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPD 684

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L++ L     LE  +Q++ +M
Sbjct: 685 RMTYGTLLRALQKTNNLELVEQLLKEM 711



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 108/265 (40%), Gaps = 28/265 (10%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWC-SSGKMREAQEFLQEMSDKG------------FNPPV 122
           R  IR+ F   K+     V+ W  S   +   +  +Q  SD+              +P +
Sbjct: 36  RLTIREHFALYKKNSLRRVDRWVGSDSPISVLERIVQGASDEQALRVALDEYRGQLSPEI 95

Query: 123 RGRDLLVQGLLNAG----YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            G+  ++Q L++ G    + E A+       + G+  ++   N L+  + K+ +     +
Sbjct: 96  VGK--VLQRLIDPGAALVFFEWAE------TRDGYQHEIFCCNCLLNVLVKAHQYSQAHD 147

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++ S  +     D  TY  LI    +AG I  A+ L   +   G K    ++  I++G+ 
Sbjct: 148 LFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLC 207

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             GQ  DA   F EM  K  PP+   Y  +I    +  R  +A   L EM + G  P   
Sbjct: 208 DAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVF 266

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLE 323
            ++ V  G   C  + +   + LLE
Sbjct: 267 SYNTVLHGF--CKANRVENALWLLE 289



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 5/180 (2%)

Query: 150  KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            ++G+  D  T N L++ + +    +  +++Y +  KL    ++ T+ ILI  + +AG I 
Sbjct: 837  QEGYNHDTYTCNCLLQALLRLKRPKDALQVYRN--KLCCSPNMFTFTILIHGLCRAGDIG 894

Query: 210  EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTML 268
             A+ LL  +   G      L+  +IKG+    + D A   F EM+  G  PP+   Y+ +
Sbjct: 895  TAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTI 954

Query: 269  ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +    + G+  +A   + +M   G +P    +  +  GL   GK D  E   LL+   RS
Sbjct: 955  VDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLD--EATALLQRMTRS 1012


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I++   K G VD+A  +     +  C   V+ Y+SLL  LC+      A AL++RM
Sbjct: 222 TYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  P+  TY  +++  C  G++ EA   L+EM D G  P V    +L+      G  
Sbjct: 282 TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 341

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +V  M+++G+V +L T+NSL++  CK  EVE   ++  S+ + G   +V +Y  +
Sbjct: 342 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 401

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  + E   LL  ++ +   P    +  II  M +  + D A+  F+ ++  G 
Sbjct: 402 IAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGC 461

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PN   Y  L+    +  RF +A   L EMT + G +P    ++ V DGL    + D A 
Sbjct: 462 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAY 521

Query: 318 KI 319
           K+
Sbjct: 522 KL 523



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 150/307 (48%), Gaps = 3/307 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K   +D+A+ +  +         V  YN++L   C+      A  L+ +M
Sbjct: 46  TYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQM 105

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  ++N  C   ++ EA   + +M  +G  P V     LV G    G L
Sbjct: 106 VMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDL 165

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKI 197
           + A ++V KM ++G+  +  T+N+++  +C   +++  ++++  + + G C  DV TY  
Sbjct: 166 DGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYST 225

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++ ++ K+G +D+A RL+  +V  G  P    Y+ ++ G+ + G+ D+A      M   G
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y  +I    + GR  EA + L EM + G  P    + ++ D    CGK +  +
Sbjct: 286 CSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE--D 343

Query: 318 KIELLEV 324
            I L+EV
Sbjct: 344 AIGLVEV 350



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 16/317 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M   N      T + II+   K   VD A E+FN      C   ++ YNSL+  LC+
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 65  VKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            + F  A  L+R M RK G  PD  TY  +++  C S ++  A +   +M   G  P   
Sbjct: 478 SRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDV 537

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
              +++  L    +++ A  ++  M+K GF     T+ +LI+  CK+G ++  +E+   +
Sbjct: 538 TYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLL 597

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G   DV T+ I I  +SK G + +A  LL  ++  G  P    Y  ++KG     + 
Sbjct: 598 LSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRT 657

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           +DA   F  M+  G  P+   YT L+      G  V+  +Y   + E+  + +   F L 
Sbjct: 658 EDAVDLFEVMRQCGCEPDNATYTTLV------GHLVDKKSYKDLLAEVSKSMVDTGFKL- 710

Query: 304 TDGLKNCGKHDLAEKIE 320
                    H+L+ K+E
Sbjct: 711 --------NHELSSKLE 719



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 154/327 (47%), Gaps = 3/327 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     S +  T S ++    K G +D A  +  + T   C   ++ YN+++   
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     AY L+  M+  G  P+  TY +L++A+C  GK  +A   ++ M +KG+ P +
Sbjct: 301 CKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNL 360

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+        +E A Q+++ MI++G V ++ ++N++I  +CK+ +V   V +   
Sbjct: 361 FTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQ 420

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       D+ T+  +I A+ K   +D A+ L + + E G  P    Y  ++ G+ +  +
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480

Query: 243 FDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           FD A     EM  K G  P+   Y  +I    +  R   A    ++M   GL P    + 
Sbjct: 481 FDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYS 540

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328
           +V   L  C    + E   +LE+ L++
Sbjct: 541 IVISSL--CKWRFMDEANNVLELMLKN 565



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +++ F + G +D AVE+  K T    +   + YN+++  LC  +    A  L + M
Sbjct: 151 TYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEM 210

Query: 79  IRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
              G  P D  TY+ +V++   SGK+ +A   ++ M  KG +P V     L+ GL  AG 
Sbjct: 211 EESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGK 270

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A  ++ +M + G   ++ T+N++I+  CK G ++    +   +   G   +V TY +
Sbjct: 271 LDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTV 330

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A  K G  ++A  L+  +VE G+ P    Y  ++    ++ + + A    S M  KG
Sbjct: 331 LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PN   Y  +I    +  +  E    L +M      P    F+ + D +    + D+A
Sbjct: 391 CVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIA 449



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 4/276 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++ S+L  LC+      A    R M  K   PD  TY  ++N    S ++ +A   L+EM
Sbjct: 12  VHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEM 70

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            D GF P V   + ++ G   A  +E+A  ++ +M+ +G   D+ ++ ++I  +CK  +V
Sbjct: 71  VDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQV 130

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +    +   + + G   +V TY  L+    + G +D A  L+  + E G++P    Y  I
Sbjct: 131 DEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNI 190

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           + G+    + D A   F EM+  G  PP+   Y+ ++    + G+  +A   +  M   G
Sbjct: 191 MHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKG 250

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +P    +  +  GL   GK D  E   LL+   RS
Sbjct: 251 CSPNVVTYSSLLHGLCKAGKLD--EATALLQRMTRS 284



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 2/240 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M RKG       +  ++   C +G+  +A    +EMS K   P     + ++ GL  +  
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDR 59

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A +++ +M+  GF  ++ ++N+++   CK+  VE  + +   +   G   DV +Y  
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTT 119

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K   +DEA R++  +++ G +P    Y  ++ G  R G  D A     +M  +G
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR-CFDLVTDGLKNCGKHDLA 316
           + PN   Y  ++     G +   A     EM E G  P     +  + D L   GK D A
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++++     ++     +L++    + G VD  VE+  K  +F C+  ++ YN++L  L
Sbjct: 164 RALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGL 223

Query: 63  CEVKLFHGAYALIRRMIR----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           C  K +     L+  M+R           G  PD R YA +++  C  G    A + L  
Sbjct: 224 CMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSR 283

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M   G  P V   + +++GL +A   E A+ ++ +M ++   LD  TFN L++  C++G 
Sbjct: 284 MPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGL 343

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+  +E+   + + G   DV TY  +I    K G++DEA  LL N+   G KP    Y  
Sbjct: 344 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 403

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG+ R  ++ DA    S M  +G  PN   +  LI    + G   +A   L +M   G
Sbjct: 404 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNG 463

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            +P    +  V DGL   GK +  E +ELL V
Sbjct: 464 CSPDLISYSTVIDGLGKAGKTE--EALELLNV 493



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 133/270 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +     C   V+ Y +++   C+  L   A  L++ M
Sbjct: 330 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 389

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   C + +  +AQE +  M  +G  P     + L+  +   G  
Sbjct: 390 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLA 449

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 450 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 509

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G  D+  ++  ++ +   +   +LY  +I  + +R + D A  FF+ M   G 
Sbjct: 510 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 569

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            PN   YT+LI      G   EA + L E+
Sbjct: 570 MPNESTYTILIRGLASEGLVREAQDLLSEL 599



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 121/257 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+   C+  L      L+ +M+  G +PD  TY  ++N +C  G + EA   L+ MS
Sbjct: 331 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMS 390

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      ++++GL  A     A+++++ MI+QG + +  TFN+LI  +CK G  E
Sbjct: 391 ACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAE 450

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E+   +   G   D+ +Y  +I  + KAG  +EA  LL+ ++  G  P   +Y+ + 
Sbjct: 451 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMA 510

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + R G+ D     F  ++      +  +Y  +I+   +      A ++   M   G  
Sbjct: 511 SALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCM 570

Query: 295 PISRCFDLVTDGLKNCG 311
           P    + ++  GL + G
Sbjct: 571 PNESTYTILIRGLASEG 587



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 142/347 (40%), Gaps = 49/347 (14%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+      GL+ +A+ V ++     C     + + +L A C    F  A   ++ +  KG
Sbjct: 114 IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG 173

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     ++V+A C  G + E  E L+++   G  P +   + +++GL  A   +  +
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 143 QMVNKMIK----------QGFVLDLETFNSLIETICKSGEVEFCVEM------------- 179
           +++ +M++           G   DL  + ++I+ ICK G  E   ++             
Sbjct: 234 ELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNV 293

Query: 180 --YYSVCKLGLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLH 216
             Y +V K GLC+                     D  T+ IL+    + G++D    LL 
Sbjct: 294 VCYNTVLK-GLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLE 352

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            ++E G  P    Y  +I G  + G  D+A      M   G  PN   YT+++    R  
Sbjct: 353 QMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAE 412

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           R+V+A   +  M + G  P    F+ + + +  C K    + IELL+
Sbjct: 413 RWVDAQELISHMIQQGCLPNPVTFNTLINFM--CKKGLAEQAIELLK 457



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  ++P T+  S +     + G  D  +++F+       +    LYN+++ +LC+     
Sbjct: 496 NKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETD 555

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            A      M+  G +P++ TY IL+    S G +REAQ+ L E+  +
Sbjct: 556 RAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 602


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 150/305 (49%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+  F   G V+ A  +F +    N     + +  L+  LC+ ++   A+ +   M
Sbjct: 117 TYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  LV+ +CS  +M EAQ+    M  KG  P VR  ++L+ G   +G +
Sbjct: 177 TEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRI 236

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK ++ +M  +    D+ T+++L+   C+ G  +   E+   +C  GL  ++ TY I+
Sbjct: 237 DEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIV 296

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +DEAF LL  + E   +P   +Y  +I+GM   G+ + A   FS + +KG 
Sbjct: 297 LDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGI 356

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    YT++I+   +GG   EA     EM   G  P S  ++++  G    G  D    
Sbjct: 357 QPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG--DTPNA 414

Query: 319 IELLE 323
           + L+E
Sbjct: 415 VRLIE 419



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 138/287 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K  ++  A  VF   T    +  V  YN+L+   C       A  L   M
Sbjct: 152 TFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIM 211

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+ R+Y IL+N  C SG++ EA+  L EMS K   P +     L++G    G  
Sbjct: 212 DRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRP 271

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++++ +M   G + +L T++ +++ +CK G ++   E+  ++ +  +  ++  Y IL
Sbjct: 272 QEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++ A  L  NL   G +P    Y  +I G+ + G  ++A   F EM + G 
Sbjct: 332 IEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGC 391

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            PN   Y ++I    R G    A   + EM   G +  S  F +++D
Sbjct: 392 LPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 126/271 (46%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  ++ +N+LL  LC       A  L   M++ G  PD  TY+ ++N  C  G    A +
Sbjct: 7   QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L++M +KG  P V   + ++  L     +  A    ++M+K+G   D+ T++S++   C
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G V     ++  + +  +  +  T+ ILI  + K  MI EA+ +   + E G +P   
Sbjct: 127 NLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVY 186

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++ G   R Q D+A   F+ M  KG  PN   Y +LI    + GR  EA   L EM
Sbjct: 187 TYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   LTP    +  +  G    G+   A+++
Sbjct: 247 SHKSLTPDIFTYSTLMRGFCQVGRPQEAQEL 277



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 147/316 (46%), Gaps = 4/316 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           + L + P   T + ++        + +AV++F++      +  V+ Y++++  LC++   
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  L+++M  KG  P+   Y  ++++ C    + EA +F  EM  +G  P V     +
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G  N G +  A  +  +M+++  + +  TF  LI+ +CK   +     ++ ++ + GL
Sbjct: 122 LHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGL 181

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV TY  L+        +DEA +L + +   G  P    Y  +I G  + G+ D+A  
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EM  K   P+   Y+ L+    + GR  EA   L EM   GL P    + +V DGL 
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGL- 300

Query: 309 NCGKHDLAEKIELLEV 324
            C    L E  ELL+ 
Sbjct: 301 -CKHGHLDEAFELLKA 315



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 122/267 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W   E M    L     T + +++ +     +D A ++FN      C   V  YN L+  
Sbjct: 170 WLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILING 229

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A  L+  M  K   PD  TY+ L+  +C  G+ +EAQE L+EM   G  P 
Sbjct: 230 HCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPN 289

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +    +++ GL   G+L+ A +++  M +     ++  +  LIE +C  G++E   E++ 
Sbjct: 290 LITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFS 349

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   G+   V TY ++I  + K G+ +EA  L   +  +G  P    Y  II+G  R G
Sbjct: 350 NLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNG 409

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTML 268
              +A     EM  KG   +   + ML
Sbjct: 410 DTPNAVRLIEEMVGKGFSADSSTFRML 436



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 145/301 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K G    A+++  K     C+  V+ YN+++ +LC+ +L   A      M
Sbjct: 47  TYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEM 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY+ +++ +C+ G++ EA    ++M ++   P      +L+ GL     +
Sbjct: 107 VKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMI 166

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +   M ++G   D+ T+N+L++  C   +++   +++  + + G   +V +Y IL
Sbjct: 167 SEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNIL 226

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+G IDEA  LL  +      P    Y+ +++G  + G+  +A     EM   G 
Sbjct: 227 INGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGL 286

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y++++    + G   EA   L  M E  + P    + ++ +G+   GK + A +
Sbjct: 287 LPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARE 346

Query: 319 I 319
           +
Sbjct: 347 L 347



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 2/202 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S++P   T S ++  F + G    A E+  +  ++     ++ Y+ +L  LC+      A
Sbjct: 250 SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEA 309

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L++ M      P+   Y IL+   C+ GK+  A+E    +  KG  P V    +++ G
Sbjct: 310 FELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISG 369

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           LL  G    A ++  +M   G + +  T+N +I+   ++G+    V +   +   G  AD
Sbjct: 370 LLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSAD 429

Query: 192 VSTYKILIPAVSKAGMIDEAFR 213
            ST+++L    S   +I +  R
Sbjct: 430 SSTFRMLSDLESSDEIISQFMR 451


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 11/327 (3%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            VSP   T +++I    K G    A+ +F +     C    + YN+L+  LC +     A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L++ M   G      TY  +++  C   ++ EA+E   +M  +G +      + L+ G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     ++ A +++N+MI +G   +  T+NS++   CK G+++   ++  ++   G   D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI  + KAG    A ++L  +   G +P P  Y P+++ +FRR    DA   F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 252 EMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           EM   G PP+   Y ++   +C  GG   EA ++++EM + G  P    F ++ +GL N 
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 311 GKHD--------LAEKIELLEVSLRSV 329
           G  D        + EK++L E  + ++
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T + +++ F + G ++ A+ V  +     C    +  N L+   C+
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   VN  C +  +  A + +  M  +G +P V  
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++V  L   G LE AK ++N+M+ +G + D+ TFN+LI  +C    +E  +++   V 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     +M+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 305 DGLKNCGKHDLAEKIELL 322
           DGL  C    + +  EL+
Sbjct: 504 DGL--CKDKKIDDAFELI 519



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+++G  PD  TY I+VN  C +G++ EA+  L +M D+G  P +   + L+  L 
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               LE A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +   G + +A  LL ++   G       Y  II G+ ++ + ++A   F +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++G   N   +  LI    +  +  +A   + +M   GL P +  ++ +      C + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL--THYCKQG 545

Query: 314 DLAEKIELLEV 324
           D+ +  ++LE 
Sbjct: 546 DIKKAADILET 556



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G ++ A  + N+     C   +  +N+L+ ALC       A  L R++
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G    A    +EM + G  P     + L+  L + G L
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 443 GKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ID+AF L++ ++ +G +P    Y  I+    ++G    A      M   G 
Sbjct: 503 IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 563 EVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V +A++V +          V  YN ++  LC+      A  ++ +M+ +G +PD  T+  
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A C+  ++ EA +  ++++ KG +P V   ++L+  L   G    A ++  +M   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+N+LI+ +C  G++   +++   +   G      TY  +I  + K   I+EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +   +   G       +  +I G+ +  + DDAF   ++M  +G  PN   Y  ++T  
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G   +AA+ L  MT  G       +  + +GL   G+  +A K+
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 5/321 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           + +  P+    II + G  G +D    +  +      Q  + + +S L +    +LF  A
Sbjct: 69  DFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDA 128

Query: 72  YALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             LI   ++   G   D   Y  L+N      KM+  +    EM  +G  P V   + L+
Sbjct: 129 VDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           + L  A  + +A  M+ +M  +G   D  TF +L++   + G +E  + +   + ++G  
Sbjct: 189 KALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A   T  +LI    K G +++A   +   + DG +P    Y   + G+ +      A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  +GH P+   Y +++    + G+  EA   L +M + G  P    F+ +   L  
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL-- 366

Query: 310 CGKHDLAEKIELL-EVSLRSV 329
           C  + L E ++L  +V+++ V
Sbjct: 367 CTGNRLEEALDLARQVTVKGV 387



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 3/245 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I+   K   +D+A E+ N+  +   Q   + YNS+L   C+   
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGD 546

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 547 IKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNP 606

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKL 186
           ++Q L     +  A  +  +M + G   D  T+  +   +C+  G ++   +    +   
Sbjct: 607 VLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + S++++L   +   GM D   R +  ++E        + A  I+G  +  +F DA
Sbjct: 667 GFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSA--IRGYLKIRKFYDA 724

Query: 247 FCFFS 251
              F 
Sbjct: 725 LATFG 729


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  145 bits (365), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 157/327 (48%), Gaps = 11/327 (3%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            VSP   T +++I    K G    A+ +F +     C    + YN+L+  LC +     A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L++ M   G      TY  +++  C   ++ EA+E   +M  +G +      + L+ G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     ++ A +++N+MI +G   +  T+NS++   CK G+++   ++  ++   G   D
Sbjct: 506 LCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI  + KAG    A ++L  +   G +P P  Y P+++ +FRR    DA   F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 252 EMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           EM   G PP+   Y ++   +C  GG   EA ++++EM + G  P    F ++ +GL N 
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 311 GKHD--------LAEKIELLEVSLRSV 329
           G  D        + EK++L E  + ++
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T + +++ F + G ++ A+ V  +     C    +  N L+   C+
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   VN  C +  +  A + +  M  +G +P V  
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++V  L   G LE AK ++N+M+ +G + D+ TFN+LI  +C    +E  +++   V 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     +M+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 305 DGLKNCGKHDLAEKIELL 322
           DGL  C    + +  EL+
Sbjct: 504 DGL--CKDKKIDDAFELI 519



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+++G  PD  TY I+VN  C +G++ EA+  L +M D+G  P +   + L+  L 
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               LE A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +   G + +A  LL ++   G       Y  II G+ ++ + ++A   F +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++G   N   +  LI    +  +  +A   + +M   GL P +  ++ +      C + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL--THYCKQG 545

Query: 314 DLAEKIELLEV 324
           D+ +  ++LE 
Sbjct: 546 DIKKAADILET 556



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G ++ A  + N+     C   +  +N+L+ ALC       A  L R++
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G    A    +EM + G  P     + L+  L + G L
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 443 GKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ID+AF L++ ++ +G +P    Y  I+    ++G    A      M   G 
Sbjct: 503 IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 563 EVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V +A++V +          V  YN ++  LC+      A  ++ +M+ +G +PD  T+  
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A C+  ++ EA +  ++++ KG +P V   ++L+  L   G    A ++  +M   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+N+LI+ +C  G++   +++   +   G      TY  +I  + K   I+EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +   +   G       +  +I G+ +  + DDAF   ++M  +G  PN   Y  ++T  
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHY 541

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G   +AA+ L  MT  G       +  + +GL   G+  +A K+
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 5/321 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           + +  P+    II + G  G +D    +  +      Q  + + +S L +    +LF  A
Sbjct: 69  DFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDA 128

Query: 72  YALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             LI   ++   G   D   Y  L+N      KM+  +    EM  +G  P V   + L+
Sbjct: 129 VDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           + L  A  + +A  M+ +M  +G   D  TF +L++   + G +E  + +   + ++G  
Sbjct: 189 KALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A   T  +LI    K G +++A   +   + DG +P    Y   + G+ +      A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  +GH P+   Y +++    + G+  EA   L +M + G  P    F+ +   L  
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL-- 366

Query: 310 CGKHDLAEKIELL-EVSLRSV 329
           C  + L E ++L  +V+++ V
Sbjct: 367 CTGNRLEEALDLARQVTVKGV 387



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 3/245 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I+   K   +D+A E+ N+  +   Q   + YNS+L   C+   
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGD 546

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 547 IKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNP 606

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKL 186
           ++Q L     +  A  +  +M + G   D  T+  +   +C+  G ++   +    +   
Sbjct: 607 VLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + S++++L   +   GM D   R +  ++E        + A  I+G  +  +F DA
Sbjct: 667 GFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSA--IRGYLKIRKFYDA 724

Query: 247 FCFFS 251
              F 
Sbjct: 725 LATFG 729


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 157/326 (48%), Gaps = 11/326 (3%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I    K G    A+ +F +     C    + YN+L+  LC +     A 
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKAL 354

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M   G      TY  +++  C   ++ EA+E   +M  +G +      + L+ GL
Sbjct: 355 DLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 414

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A +++N+MI +G   +  T+NS++   CK G+++   ++  ++   G   DV
Sbjct: 415 CKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDV 474

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + KAG    A ++L  +   G +P P  Y P+++ +FRR    DA   F E
Sbjct: 475 VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFRE 534

Query: 253 MKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           M   G PP+   Y ++   +C  GG   EA ++++EM + G  P    F ++ +GL N G
Sbjct: 535 MAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594

Query: 312 KHD--------LAEKIELLEVSLRSV 329
             D        + EK++L E  + ++
Sbjct: 595 MDDYFIRAIEIIMEKVDLRESDVSAI 620



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 2/318 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T + +++ F + G ++ A+ V  +     C    +  N L+   C+
Sbjct: 112 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 171

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   VN  C +  +  A + +  M  +G +P V  
Sbjct: 172 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 231

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++V  L   G LE AK ++N+M+ +G + D+ TFN+LI  +C    +E  +++   V 
Sbjct: 232 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 291

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 292 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 351

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     +M+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 352 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 411

Query: 305 DGLKNCGKHDLAEKIELL 322
           DGL  C    + +  EL+
Sbjct: 412 DGL--CKDKKIDDAFELI 427



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  
Sbjct: 156 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 215

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+++G  PD  TY I+VN  C +G++ EA+  L +M D+G  P +   + L+  L 
Sbjct: 216 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 275

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               LE A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  
Sbjct: 276 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 335

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +   G + +A  LL ++   G       Y  II G+ ++ + ++A   F +M
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 395

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++G   N   +  LI    +  +  +A   + +M   GL P +  ++ +      C + 
Sbjct: 396 DLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL--THYCKQG 453

Query: 314 DLAEKIELLEV 324
           D+ +  ++LE 
Sbjct: 454 DIKKAADILET 464



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G ++ A  + N+     C   +  +N+L+ ALC       A  L R++
Sbjct: 231 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 290

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G    A    +EM + G  P     + L+  L + G L
Sbjct: 291 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 350

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 351 GKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 410

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ID+AF L++ ++ +G +P    Y  I+    ++G    A      M   G 
Sbjct: 411 IDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 470

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 471 EVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 519



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 140/301 (46%), Gaps = 8/301 (2%)

Query: 24  IEEFGKHGLVDNAVE-VFNKCTA-FNCQQCVLLYNSLLFALCE---VKLFHGAYALIRRM 78
           ++ +    L D+AV+ + N+    F  Q   ++YN LL  L E   +KL    Y+    M
Sbjct: 24  LDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYS---EM 80

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  T+  L+ A C + ++R A   L+EMS +G  P       L+QG +  G +
Sbjct: 81  GARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSI 140

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A ++  +M++ G      T N LI   CK G VE  +         G   D  TY   
Sbjct: 141 EAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTF 200

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +   +  A +++  +V++GH P    Y  ++  + + GQ ++A    ++M  +G 
Sbjct: 201 VNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGC 260

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +  LI     G R  EA +   ++T  G++P    F+++ + L   G   LA +
Sbjct: 261 LPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALR 320

Query: 319 I 319
           +
Sbjct: 321 L 321



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 126/268 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN ++  LC+      A  ++ +M+ +G +PD  T+  L+ A C+  ++ EA +  +
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 288

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +++ KG +P V   ++L+  L   G    A ++  +M   G   D  T+N+LI+ +C  G
Sbjct: 289 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 348

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++   +++   +   G      TY  +I  + K   I+EA  +   +   G       + 
Sbjct: 349 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 408

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ +  + DDAF   ++M  +G  PN   Y  ++T   + G   +AA+ L  MT  
Sbjct: 409 TLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTAN 468

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G       +  + +GL   G+  +A K+
Sbjct: 469 GFEVDVVTYGTLINGLCKAGRTQVALKV 496



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 5/267 (1%)

Query: 66  KLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +LF  A  LI   ++   G   D   Y  L+N      KM+  +    EM  +G  P V 
Sbjct: 31  QLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVV 90

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L++ L  A  + +A  M+ +M  +G   D  TF +L++   + G +E  + +   +
Sbjct: 91  TFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARM 150

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            ++G  A   T  +LI    K G +++A   +   + DG +P    Y   + G+ +    
Sbjct: 151 LEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHV 210

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A      M  +GH P+   Y +++    + G+  EA   L +M + G  P    F+ +
Sbjct: 211 GHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTL 270

Query: 304 TDGLKNCGKHDLAEKIELL-EVSLRSV 329
              L  C  + L E ++L  +V+++ V
Sbjct: 271 IAAL--CTGNRLEEALDLARQVTVKGV 295



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 3/244 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I+   K   +D+A E+ N+  +   Q   + YNS+L   C+   
Sbjct: 395 MDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGD 454

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 455 IKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNP 514

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKL 186
           ++Q L     +  A  +  +M + G   D  T+  +   +C+  G ++   +    +   
Sbjct: 515 VLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 574

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + S++++L   +   GM D   R +  ++E        + A  I+G  +  +F DA
Sbjct: 575 GFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSA--IRGYLKIRKFYDA 632

Query: 247 FCFF 250
              F
Sbjct: 633 LATF 636


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  144 bits (364), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 154/315 (48%), Gaps = 4/315 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G +D A+ +F+K     C   V+ YN+L+   C+++     +
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M  KG  P+  +Y +++N  C  G+M+E    L EM+ +G++      + L++G 
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  M  +M++ G    + T+ SLI ++CK+G +   +E    +   GLC + 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+   S+ G ++EA+R+L  + ++G  P    Y  +I G    G+ +DA     +
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED 440

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           MK KG  P+   Y+ +++   R     EA     EM E G+ P +  +  +  G   C +
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF--CEQ 498

Query: 313 HDLAEKIELLEVSLR 327
               E  +L E  LR
Sbjct: 499 RRTKEACDLYEEMLR 513



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+   FH A  +   M+R G  P   TY  L+++ C +G M  A EFL +M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G  P  R    LV G    GY+  A +++ +M   GF   + T+N+LI   C +G++E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + + GL  DV +Y  ++    ++  +DEA R+   +VE G KP    Y+ +I
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G   + +  +A   + EM   G PP+   YT LI      G   +A     EM E G+ 
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P    + ++ +GL    +   A+++ L
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLL 579



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 132/286 (46%), Gaps = 2/286 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF +         V  YN L+   C       A  L  +M  KG +P+  TY  L++
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C   K+ +  + L+ M+ KG  P +   ++++ GL   G ++    ++ +M ++G+ L
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+N+LI+  CK G     + M+  + + GL   V TY  LI ++ KAG ++ A   L
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +   G  P    Y  ++ G  ++G  ++A+    EM   G  P+   Y  LI      
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVT 428

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           G+  +A   L +M E GL+P    +  V  G   C  +D+ E + +
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF--CRSYDVDEALRV 472



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L  + +T + +++ F + G ++ A  V  +         V+ YN+L+   C 
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCV 427

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A A++  M  KG  PD  +Y+ +++ +C S  + EA    +EM +KG  P    
Sbjct: 428 TGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTIT 487

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QG       + A  +  +M++ G   D  T+ +LI   C  G++E  ++++  + 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLL---------------HNLVED-GHKPFPS 228
           + G+  DV TY +LI  ++K     EA RLL               H L+E+  +  F S
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + + +IKG   +G   +A   F  M  K H P+   Y ++I    R G   +A     EM
Sbjct: 608 VVS-LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666

Query: 289 TEMG 292
            + G
Sbjct: 667 VKSG 670



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 129/275 (46%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S+   T + +I+ + K G    A+ +  +         V+ Y SL+ ++C+    + A  
Sbjct: 307 SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            + +M  +G  P++RTY  LV+ +   G M EA   L+EM+D GF+P V   + L+ G  
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHC 426

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G +E A  ++  M ++G   D+ ++++++   C+S +V+  + +   + + G+  D  
Sbjct: 427 VTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTI 486

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI    +     EA  L   ++  G  P    Y  +I      G  + A    +EM
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
             KG  P+   Y++LI    +  R  EA   L+++
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 128/306 (41%), Gaps = 23/306 (7%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +  M     S S  T + +I      G +++A+ V            V+ Y+++L  
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A  + R M+ KG  PD  TY+ L+  +C   + +EA +  +EM   G  P 
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCV 177
                 L+      G LE A Q+ N+M+++G + D+ T++ LI  + K           +
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSK---------------AGMIDEAFRLLHNLVEDG 222
           +++Y   +  + +DV TY  LI   S                 GM+ EA ++  +++   
Sbjct: 580 KLFY---EESVPSDV-TYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKN 635

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
           HKP  + Y  +I G  R G    A+  + EM   G   +      L+    + G+  E  
Sbjct: 636 HKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELN 695

Query: 283 NYLVEM 288
           + +V +
Sbjct: 696 SVIVHV 701



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 1/170 (0%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYYSVC 184
           DL+V+       ++ A  +V+     GF+  + ++N++++   +S   + F   ++  + 
Sbjct: 138 DLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEML 197

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +  +V TY ILI     AG ID A  L   +   G  P    Y  +I G  +  + D
Sbjct: 198 ESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKID 257

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           D F     M +KG  PN   Y ++I    R GR  E +  L EM   G +
Sbjct: 258 DGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYS 307



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 15/222 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G ++ A+++ N+         V+ Y+ L+  L +      A  L+ ++
Sbjct: 522 TYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

Query: 79  IRKGFVPDKRTYAILV---------------NAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             +  VP   TY  L+                 +C  G M EA +  + M  K   P   
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGT 641

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++++ G   AG +  A  +  +M+K GF+L   T  +L++ + K G+V     +   V
Sbjct: 642 AYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +    ++    K+L+    + G +D    +L  + +DG  P
Sbjct: 702 LRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 158/327 (48%), Gaps = 4/327 (1%)

Query: 4   TIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            +E  +  +   SP   T S++I+   K   V  AVE+     A  C   V+ Y  L+  
Sbjct: 98  ALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDG 157

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+ ++R M+  G VP+  TY  L++  C + ++ +A   +++M+ +G  P 
Sbjct: 158 LCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 217

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ GL   G ++ A  M+  MI +G   DL  +N LI  +CK+ +V+  + +  
Sbjct: 218 VVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLR 277

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                G+  DV TY  +I  + ++  +DEA RLL  +   G  P   LY+ +I G+ + G
Sbjct: 278 RAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAG 337

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+AF  +  M   G   +   Y+ LI    + GR  EA   L  M  MG  P +  ++
Sbjct: 338 KVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYN 397

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +  GL  C  + L E IEL+E   RS
Sbjct: 398 SLIKGL--CDLNHLDEAIELVEEMERS 422



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 153/340 (45%), Gaps = 36/340 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    S    T +++++   K   V  A EV  +     C   ++ YNSLL  LC 
Sbjct: 136 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 195

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A AL+R M  +G  P+  TY  L++  C  G++++A   L +M DKG  P +  
Sbjct: 196 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 255

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS---------------------- 162
            ++L+ GL  A  ++ +  ++ + +  G   D+ T++S                      
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK 315

Query: 163 -------------LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                        LI+ +CK+G+V+   ++Y  +   G  ADV TY  LI  + KAG +D
Sbjct: 316 SRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVD 375

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  LL  +V  G  P    Y  +IKG+      D+A     EM+     P+   Y +LI
Sbjct: 376 EAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI 435

Query: 270 TMCGRGGRFVEAA-NYLVEMTEMGLTPISRCFDLVTDGLK 308
               R  R   AA +Y  EM + G+ P    + ++ +GLK
Sbjct: 436 HGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLK 475



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 141/299 (47%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++++    + G ++ A+E F K     C   V+ Y+ L+  LC+      A  L+  M
Sbjct: 81  SFNILVTGLCRAGKIETALEFFRK-MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESM 139

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY ILV+  C   K+  A E L+EM D G  P +   + L+ GL  A  +
Sbjct: 140 KARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRV 199

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M  +G   ++ T+ +LI+ +CK G V+    M   +   G   D+  Y +L
Sbjct: 200 SDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNML 259

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  +DE+  LL   V  G KP    Y+ +I G+ R  + D+A      +K +G 
Sbjct: 260 INGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 319

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           PP+  +Y+ LI    + G+  EA +    MT  G       +  + DGL   G+ D A 
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAH 378



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 143/315 (45%), Gaps = 4/315 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +    +  T + +I+   K+   D A E+F    +  C   ++ YN+LL  L     
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL + M+ +    D  ++ ILV   C +GK+  A EF ++M D+  +P V    +
Sbjct: 61  LERAMALFQEMLDR-RSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSV 118

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  A  +  A +++  M  +G   D+ T+  L++ +CK  +V    E+   +   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              ++ TY  L+  + +A  + +A  L+ ++   G  P    Y  +I G+ + G+  DA 
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAC 238

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              ++M  KG  P+  +Y MLI    +  +  E+   L      G+ P    +  V  GL
Sbjct: 239 AMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL 298

Query: 308 KNCGKHDLAEKIELL 322
             C  + L E   LL
Sbjct: 299 --CRSNRLDEACRLL 311



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 2/208 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    +   +D A  +     +  C   V+LY++L+  LC+      A+ L   M
Sbjct: 290 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 349

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D  TY+ L++  C +G++ EA   L  M   G  P     + L++GL +  +L
Sbjct: 350 TGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHL 409

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKI 197
           + A ++V +M +        T+N LI  +C+   V+     Y+  +   G+  D  TY I
Sbjct: 410 DEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSI 469

Query: 198 LIPAVSKAGMIDEAFRL-LHNLVEDGHK 224
           L+  + K+  + E   L L  +V+ G++
Sbjct: 470 LLEGLKKSKDLHELRHLVLDQMVQLGYR 497


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 1/303 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS    T +++I    K G    A+ +F +  +  C    + YN+L+  LC +     A 
Sbjct: 391 LSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKAL 450

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M   G      TY  +++  C   ++ EA+E   +M  +G +      + L+ GL
Sbjct: 451 DLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGL 510

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A Q++++MI +G   +  T+NS++   CK G+++   ++  ++   G   DV
Sbjct: 511 CKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDV 570

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + KAG    A +LL  +   G +  P  Y P+I+ +FRR    DA   F E
Sbjct: 571 VTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFRE 630

Query: 253 MKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           M   G PP+   Y ++   +C  GG   EA ++L+EM + G  P    F ++ +GL N G
Sbjct: 631 MTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690

Query: 312 KHD 314
             D
Sbjct: 691 MDD 693



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 145/315 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T + +++ F + G +  A+ V  +     C    +  N L+   C+
Sbjct: 208 LEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCK 267

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   VN  C +G +  A + +  M  +G +P V  
Sbjct: 268 LGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFT 327

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++V  L   G LE AK ++N+M+++G + D+ TFN+LI  +C    +E  +++   V 
Sbjct: 328 YNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVT 387

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 388 LKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLG 447

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     EM+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 448 KALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 507

Query: 305 DGLKNCGKHDLAEKI 319
           DGL    + D A ++
Sbjct: 508 DGLCKDKRIDDANQL 522



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 148/311 (47%), Gaps = 2/311 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  
Sbjct: 252 SPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALK 311

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+++G  PD  TY I+VN  C +G++ EA+  L +M ++G  P +   + L+  L 
Sbjct: 312 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALC 371

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           +   LE A  +  ++  +G   D+ TFN LI  +CK G+ +  + ++  +   G   D  
Sbjct: 372 SGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEV 431

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +   G + +A  LL  +   G       Y  II G+ ++ + ++A   F +M
Sbjct: 432 TYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM 491

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++G   N   +  LI    +  R  +A   + +M   GL P +  ++ +      C + 
Sbjct: 492 DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSIL--THYCKQG 549

Query: 314 DLAEKIELLEV 324
           D+ +  ++L+ 
Sbjct: 550 DIKKAADILQT 560



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 8/301 (2%)

Query: 24  IEEFGKHGLVDNAVE-VFNKCTA-FNCQQCVLLYNSLLFALCE---VKLFHGAYALIRRM 78
           +E + +  L  +AV+ V N+    F  Q   ++YN LL  L E   +KL    Y+    M
Sbjct: 120 LESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYS---EM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  T+  L+ A C + ++R A   L+EMS  G  P       L+QG +  G +
Sbjct: 177 GERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSI 236

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A ++  +M++ G      T N LI   CK G VE  +         G   D  TY   
Sbjct: 237 KAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTF 296

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + + G +  A +++  +V++GH P    Y  ++  + + GQ ++A    ++M  +G 
Sbjct: 297 VNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGC 356

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +  LI     G R  EA +   ++T  GL+P    F+++ + L   G   LA +
Sbjct: 357 LPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALR 416

Query: 319 I 319
           +
Sbjct: 417 L 417



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 23/324 (7%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNK-----CTAFNCQQCVLL---------------YNSLL 59
           L  +  E G+ G+  + V  FN      C A   +  VL+               + +L+
Sbjct: 169 LETVYSEMGERGIKPDVV-TFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLM 227

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
               E      A  +  RM+  G  P K T  +L+N +C  G++ +A  ++Q+    GF 
Sbjct: 228 QGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFE 287

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     +  V GL   G++  A ++++ M+++G   D+ T+N ++  +CK+G++E    +
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 347

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              + + G   D++T+  LI A+     ++EA  L   +   G  P    +  +I  + +
Sbjct: 348 LNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G    A   F EMK  G  P+   Y  LI      G+  +A + L EM   G    +  
Sbjct: 408 VGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVT 467

Query: 300 FDLVTDGLKNCGKHDLAEKIELLE 323
           ++ + DGL  C K  + E  E+ +
Sbjct: 468 YNTIIDGL--CKKMRIEEAEEVFD 489



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 137/324 (42%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G ++ A  + N+     C   +  +N+L+ ALC       A  L R++
Sbjct: 327 TYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQV 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G  + A    +EM   G  P     + L+  L + G L
Sbjct: 387 TLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKL 446

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ +M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 447 GKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 506

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKP----FPSL------------------------- 229
           I  + K   ID+A +L+  ++ +G +P    + S+                         
Sbjct: 507 IDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGF 566

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  +I G+ + G+   A      M+IKG       Y  +I    R     +A N
Sbjct: 567 EVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMN 626

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
              EMTE+G  P +  + +V  GL
Sbjct: 627 LFREMTEVGEPPDAFTYKIVFRGL 650



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 139/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +  +    ++G V +A++V +          V  YN ++  LC+      A  ++ +M
Sbjct: 292 TYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 351

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G +PD  T+  L+ A CS  ++ EA +  ++++ KG +P V   ++L+  L   G  
Sbjct: 352 VERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDP 411

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +M   G   D  T+N+LI+ +C  G++   +++   +   G      TY  +
Sbjct: 412 QLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTI 471

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   I+EA  +   +   G       +  +I G+ +  + DDA    S+M  +G 
Sbjct: 472 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGL 531

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  ++T   + G   +AA+ L  MT  G       +  + +GL   G+  +A K
Sbjct: 532 QPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALK 591

Query: 319 I 319
           +
Sbjct: 592 L 592



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 107/253 (42%), Gaps = 3/253 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I+   K   +D+A ++ ++  +   Q   + YNS+L   C+   
Sbjct: 491 MDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGD 550

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M   GF  D  TY  L+N  C +G+ + A + L+ M  KG     +  + 
Sbjct: 551 IKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNP 610

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKL 186
           ++Q L        A  +  +M + G   D  T+  +   +C+  G +    +    +   
Sbjct: 611 VIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDK 670

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + S++++L   +   GM D   R +  ++E        + A  I+G  +  +F DA
Sbjct: 671 GFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIIEKADLGDSDVSA--IRGYLKIRKFYDA 728

Query: 247 FCFFSEMKIKGHP 259
              F  +    +P
Sbjct: 729 LATFGRLLKINNP 741


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 1/317 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + +M       S  T + +I+   K G +D A  +  K     C   V+ Y +L+  LC+
Sbjct: 33  LHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCK 92

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE-MSDKGFNPPVR 123
            +  H A   ++RM+R G  PD  TY  L++  C + +M +A   LQE M + G  P V 
Sbjct: 93  ARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVV 152

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             +  + GL  AG L+   +M+ +M + G   D+ TF S+I  +CK+  ++   +++  +
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGM 212

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            + G   D  TY I++  +S+A  +D    +L ++V+ GH    + YAP+I  + R G  
Sbjct: 213 LERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDI 272

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           + A   + +    G       +   I    R G+F  A N L+ M E G  P    ++ V
Sbjct: 273 ESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFV 332

Query: 304 TDGLKNCGKHDLAEKIE 320
            DGL   G  D A K+ 
Sbjct: 333 IDGLCKSGNVDDAWKLS 349



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN+L+  LC+ +    A  L+  M   G+     TY  L++  C SG +  AQ  LQ+M
Sbjct: 12  IYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKM 71

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +D G  P V     L+ GL  A     A Q V +M++ G   DL T+NSLI  +C +  +
Sbjct: 72  ADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRM 131

Query: 174 EFC-VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +   + +   + + G   DV TY   I  + KAG +D+   +L  +   G  P    +  
Sbjct: 132 DDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCS 191

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           II G+ +  + DDAF  F  M  +G  P+   Y++++    R  R       L  M + G
Sbjct: 192 IISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSG 251

Query: 293 LTPISRCF 300
              +S  +
Sbjct: 252 HYALSATY 259



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 3/252 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  + F  D   Y  L+   C + K R A E L  M+  G++  V     L+ GL  +G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L++A+ ++ KM   G   ++ T+ +LI+ +CK+      ++    + + G   D+ TY  
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           LI  +  A  +D+A  +L  L +E G  P    Y   I G+ + G+ D       EM   
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   +  +I+   +  R  +A      M E G  P S  + ++ D L    + D  
Sbjct: 181 GISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTV 240

Query: 317 EKIELLEVSLRS 328
           E  E+LE  ++S
Sbjct: 241 E--EVLEHMVKS 250



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 2/257 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+ +  LC+         ++  M R G  PD  T+  +++  C + ++ +A +  +
Sbjct: 151 VVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFK 210

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M ++G  P      +++  L  A  L++ ++++  M+K G      T+  LI  + ++G
Sbjct: 211 GMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAG 270

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E     Y    + G   +V T+   I A+ ++G    A  +L  ++E G  P    Y 
Sbjct: 271 DIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYN 330

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +I G+ + G  DDA+    +M   G   P+   +  LI+   + GR  +A   L EM  
Sbjct: 331 FVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKA 390

Query: 291 MGL-TPISRCFDLVTDG 306
             +  P    ++ + DG
Sbjct: 391 KNICVPDVVTYNTMIDG 407



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 4/247 (1%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP  ++   II    K   +D+A +VF       C    L Y+ +L  L          
Sbjct: 182 ISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVE 241

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M++ G      TYA L++A   +G +  A    ++  + G    V   +  +  L
Sbjct: 242 EVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGAL 301

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-D 191
             +G    AK ++  MI+ G + +L ++N +I+ +CKSG V+   ++   +   G C  D
Sbjct: 302 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 361

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           V  +  LI    KAG + +A +LL  +  ++   P    Y  +I G  + G    A    
Sbjct: 362 VIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLL 421

Query: 251 SEMKIKG 257
            EM+  G
Sbjct: 422 EEMQAVG 428


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  144 bits (362), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 156/327 (47%), Gaps = 11/327 (3%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            VSP   T +++I    K G    A+ +F +     C    + YN+L+  LC +     A
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L++ M   G      TY  +++  C   ++ EA+E   +M  +G +      + L+ G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 505

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     ++ A  ++N+MI +G   +  T+NS++   CK G+++   ++  ++   G   D
Sbjct: 506 LCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVD 565

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI  + KAG    A ++L  +   G +P P  Y P+++ +FRR    DA   F 
Sbjct: 566 VVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFR 625

Query: 252 EMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           EM   G PP+   Y ++   +C  GG   EA ++++EM + G  P    F ++ +GL N 
Sbjct: 626 EMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNL 685

Query: 311 GKHD--------LAEKIELLEVSLRSV 329
           G  D        + EK++L E  + ++
Sbjct: 686 GMDDYFIRAIEIIMEKVDLRESDVSAI 712



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 139/303 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T + +++ F + G ++ A+ V  +     C    +  N L+   C+
Sbjct: 204 LEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCK 263

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   I++ I  GF PD+ TY   VN  C +  +  A + +  M  +G +P V  
Sbjct: 264 LGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++V  L   G LE AK ++N+M+ +G + D+ TFN+LI  +C    +E  +++   V 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+ ILI A+ K G    A RL   +   G  P    Y  +I  +   G+  
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     +M+  G P +   Y  +I    +  R  EA     +M   G++  +  F+ + 
Sbjct: 444 KALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLI 503

Query: 305 DGL 307
           DGL
Sbjct: 504 DGL 506



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 147/311 (47%), Gaps = 2/311 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T++++I  + K G V++A+    +  A   +   + YN+ +  LC+      A  
Sbjct: 248 SATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+++G  PD  TY I+VN  C +G++ EA+  L +M D+G  P +   + L+  L 
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               LE A  +  ++  +G   D+ TFN LI  +CK G+    + ++  +   G   D  
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +   G + +A  LL ++   G       Y  II G+ ++ + ++A   F +M
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQM 487

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++G   N   +  LI    +  +  +A   + +M   GL P +  ++ +      C + 
Sbjct: 488 DLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSIL--THYCKQG 545

Query: 314 DLAEKIELLEV 324
           D+ +  ++LE 
Sbjct: 546 DIKKAADILET 556



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G ++ A  + N+     C   +  +N+L+ ALC       A  L R++
Sbjct: 323 TYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+ IL+NA C  G    A    +EM + G  P     + L+  L + G L
Sbjct: 383 TVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKL 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M   G      T+N++I+ +CK   +E   E++  +   G+  +  T+  L
Sbjct: 443 GKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTL 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ID+AF L++ ++ +G +P    Y  I+    ++G    A      M   G 
Sbjct: 503 IDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGF 562

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   Y  LI    + GR   A   L  M   G+ P  + ++ V   L
Sbjct: 563 EVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSL 611



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V +A++V +          V  YN ++  LC+      A  ++ +M+ +G +PD  T+  
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNT 361

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A C+  ++ EA +  ++++ KG +P V   ++L+  L   G    A ++  +M   G
Sbjct: 362 LIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSG 421

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+N+LI+ +C  G++   +++   +   G      TY  +I  + K   I+EA 
Sbjct: 422 CTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAE 481

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +   +   G       +  +I G+ +  + DDAF   ++M  +G  PN   Y  ++T  
Sbjct: 482 EVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHY 541

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G   +AA+ L  MT  G       +  + +GL   G+  +A K+
Sbjct: 542 CKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKV 588



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 136/320 (42%), Gaps = 37/320 (11%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA------- 91
           V+++  A   +  V+ +N+L+ ALC       A  ++  M  +G  PD+ T+        
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFV 227

Query: 92  ----------------------------ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                                       +L+N +C  G++ +A  ++Q+    GF P   
Sbjct: 228 EEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQI 287

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             +  V GL    ++  A ++++ M+++G   D+ T+N ++  +CK+G++E    +   +
Sbjct: 288 TYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQM 347

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G   D++T+  LI A+     ++EA  L   +   G  P    +  +I  + + G  
Sbjct: 348 VDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDP 407

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A   F EMK  G  P+   Y  LI      G+  +A + L +M   G    +  ++ +
Sbjct: 408 HLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            DGL  C K  + E  E+ +
Sbjct: 468 IDGL--CKKMRIEEAEEVFD 485



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 5/321 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           + +  P+    II + G  G +D    +  +      Q  + + +S L +    +LF  A
Sbjct: 69  DFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDA 128

Query: 72  YALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             LI   ++   G   D   Y  L+N      KM+  +    EM  +G  P V   + L+
Sbjct: 129 VDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLM 188

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           + L  A  + +A  M+ +M  +G   D  TF +L++   + G +E  + +   + ++G  
Sbjct: 189 KALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCS 248

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A   T  +LI    K G +++A   +   + DG +P    Y   + G+ +      A   
Sbjct: 249 ATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKV 308

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  +GH P+   Y +++    + G+  EA   L +M + G  P    F+ +   L  
Sbjct: 309 MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAAL-- 366

Query: 310 CGKHDLAEKIELL-EVSLRSV 329
           C  + L E ++L  +V+++ V
Sbjct: 367 CTGNRLEEALDLARQVTVKGV 387



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 129/299 (43%), Gaps = 4/299 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E MK    +    T + +I+     G +  A+++     +  C +  + YN+++  L
Sbjct: 412 RLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGL 471

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  +  +M  +G   +  T+  L++  C   K+ +A   + +M  +G  P  
Sbjct: 472 CKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNN 531

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++      G ++ A  ++  M   GF +D+ T+ +LI  +CK+G  +  +++   
Sbjct: 532 ITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRG 591

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR-RG 241
           +   G+      Y  ++ ++ +   I +A  L   + E G  P    Y  + +G+ R  G
Sbjct: 592 MRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGG 651

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTML---ITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              +AF F  EM  KG  P    + ML   +   G    F+ A   ++E  ++  + +S
Sbjct: 652 PIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVS 710



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 3/245 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I+   K   +D+A  + N+  +   Q   + YNS+L   C+   
Sbjct: 487 MDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGD 546

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   GF  D  TY  L+N  C +G+ + A + L+ M  KG  P  +  + 
Sbjct: 547 IKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNP 606

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKL 186
           ++Q L     +  A  +  +M + G   D  T+  +   +C+  G ++   +    +   
Sbjct: 607 VLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDK 666

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + S++++L   +   GM D   R +  ++E        + A  I+G  +  +F DA
Sbjct: 667 GFIPEFSSFRMLAEGLLNLGMDDYFIRAIEIIMEKVDLRESDVSA--IRGYLKIRKFYDA 724

Query: 247 FCFFS 251
              F 
Sbjct: 725 LATFG 729


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K   V  AVE+     A  C   V+ Y  L+  LC+      A+ ++R M
Sbjct: 193 TYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM 252

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G VP+  TY  L++  C + ++ +A   +++M+ +G  P V     L+ GL   G +
Sbjct: 253 LDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 312

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  M+  MI +G   DL  +N LI  +CK+ +V+  + +       G+  DV TY  +
Sbjct: 313 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 372

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + ++  +DEA RLL  +   G  P   LY+ +I G+ + G+ D+AF  +  M   G 
Sbjct: 373 IYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGC 432

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y+ LI    + GR  EA   L  M  MG  P +  ++ +  GL  C  + L E 
Sbjct: 433 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL--CDLNHLDEA 490

Query: 319 IELLEVSLRS 328
           IEL+E   RS
Sbjct: 491 IELVEEMERS 500



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 148/319 (46%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    S    T +++++   K   V  A EV  +     C   ++ YNSLL  LC 
Sbjct: 214 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A AL+R M  +G  P+  TY  L++  C  G++++A   L +M DKG  P +  
Sbjct: 274 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 333

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+ GL  A  ++ +  ++ + +  G   D+ T++S+I  +C+S  ++    +   V 
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK 393

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   DV  Y  LI  + KAG +DEAF L   +  DG       Y+ +I G+ + G+ D
Sbjct: 394 SRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVD 453

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    + M   G PP+   Y  LI          EA   + EM      P +  ++++ 
Sbjct: 454 EAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILI 513

Query: 305 DGLKNCGKHDLAEKIELLE 323
            G+  C    +   + LLE
Sbjct: 514 HGM--CRMERVDSAVVLLE 530



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 9/324 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +    +  T + +I+   K+   D A E+F    +  C   ++ YN+LL  L     
Sbjct: 105 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 164

Query: 68  FHGAYALIRRMI-RKGFVPDKR------TYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              A AL + M+ R+    D R      TY++L++  C + ++ +A E L+ M  +G +P
Sbjct: 165 LERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSP 224

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +LV GL     + +A +++ +M+  G V +L T+NSL+  +C++  V   + + 
Sbjct: 225 DVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM 284

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   +V TY  LI  + K G + +A  +L ++++ G  P   +Y  +I G+ + 
Sbjct: 285 RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKA 344

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            Q D++          G  P+   Y+ +I    R  R  EA   L+ +   G  P    +
Sbjct: 345 DQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILY 404

Query: 301 DLVTDGLKNCGKHDLAEKIELLEV 324
             + DGL   GK D  E  +L EV
Sbjct: 405 STLIDGLCKAGKVD--EAFDLYEV 426



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 131/295 (44%), Gaps = 5/295 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+   K G V +A  +            +++YN L+  LC+      + AL+RR 
Sbjct: 298 TYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 357

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY+ ++   C S ++ EA   L  +  +G  P V     L+ GL  AG +
Sbjct: 358 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKV 417

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   M   G   D+ T+++LI+ +CK+G V+    +   + ++G      TY  L
Sbjct: 418 DEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSL 477

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-- 256
           I  +     +DEA  L+  +      P    Y  +I GM R  + D A     + K +  
Sbjct: 478 IKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCV 537

Query: 257 ---GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
              G   +   Y+ LI    + GR  EA +Y  EM + G+ P    + ++ +GLK
Sbjct: 538 AAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLK 592



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 130/301 (43%), Gaps = 9/301 (2%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K   +D A+ + ++     C+  V+ YNSL+  LC+      A  L   M      P   
Sbjct: 91  KEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMV 150

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFN-------PPVRGRDLLVQGLLNAGYLESA 141
           TY  L++    +GK+  A    QEM D+  +       P V    +L+ GL  A  +  A
Sbjct: 151 TYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQA 210

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++  M  +G   D+ T+  L++ +CK  +V    E+   +   G   ++ TY  L+  
Sbjct: 211 VELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHG 270

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +A  + +A  L+ ++   G  P    Y  +I G+ + G+  DA    ++M  KG  P+
Sbjct: 271 LCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 330

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             +Y MLI    +  +  E+   L      G+ P    +  V  GL  C  + L E   L
Sbjct: 331 LMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGL--CRSNRLDEACRL 388

Query: 322 L 322
           L
Sbjct: 389 L 389



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 101/210 (48%), Gaps = 6/210 (2%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+   K G VD A +++       C   V+ Y++L+  LC+      A+ L+ RM+R
Sbjct: 405 STLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVR 464

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P   TY  L+   C    + EA E ++EM      P     ++L+ G+     ++S
Sbjct: 465 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDS 524

Query: 141 AKQMVNK-----MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           A  ++ +     +   G  LD   ++SLI+ +CK+G V   ++ +  +   G+  D  TY
Sbjct: 525 AVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITY 584

Query: 196 KILIPAVSKAGMIDEAFRL-LHNLVEDGHK 224
            IL+  + K+  + E   L L  +V+ G++
Sbjct: 585 SILLEGLKKSKDLHELRHLVLDQMVQLGYR 614



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 132/352 (37%), Gaps = 79/352 (22%)

Query: 48  CQQCVLLYNSLLF-----------------------------------ALCEVKLFHGAY 72
           CQ  V  Y +LL                                     LC+ K    A 
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDAL 64

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP------------ 120
              R M   G V D   Y  L++      ++ +A   L EM D G  P            
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 121 -----PVRGRDL------------------LVQGLLNAGYLESAKQMVNKMI-KQGFVLD 156
                P R ++L                  L+ GL   G LE A  +  +M+ ++   +D
Sbjct: 125 CKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMD 184

Query: 157 ------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                 + T++ LI+ +CK+  V   VE+  S+   G   DV TY IL+  + K   +  
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ +L  +++ G  P    Y  ++ G+ R  +  DA     +M  +G  PN   Y  LI 
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLID 304

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
              + GR  +A   L +M + G TP    ++++ +GL  C    + E I LL
Sbjct: 305 GLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGL--CKADQVDESIALL 354



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+       +D A+E+  +    NC    + YN L+  +C ++    A  L+
Sbjct: 470 STMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLL 529

Query: 76  -----RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
                R +   G   D   Y+ L++  C +G++ EA ++ QEM D G  P      +L++
Sbjct: 530 EQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLE 589

Query: 131 GLLNAGYLESAKQMV-NKMIKQGF 153
           GL  +  L   + +V ++M++ G+
Sbjct: 590 GLKKSKDLHELRHLVLDQMVQLGY 613


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     ++     +L++    + G VD AV +  K   F C+  ++ YN++L  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 63  CEVK-----------------------------------LFHGAYALIRRMIRKGFVPDK 87
           C  K                                   LF   + ++ +M   G  PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R YA +++  C  G +  A E L  M   G  P V   + +++GL +A   + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++   LD  TFN L++  C++G V+  +E+   +   G   DV TY  +I    K G+
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  LL ++   G KP    Y  ++KG+   G++ DA    S+M  +G PPN   +  
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           LI    + G   +A   L +M   G +P    +  V DGL   GK +  E +ELL V
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE--EALELLNV 521



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +  +  C   V+ Y +++   C+  L   A  L++ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+G+  +A+E + +M  +G  P     + L+  L   G +
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G +++  ++  N+ +   +    LY  +I  + +R + D A  FF+ M   G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL--TPISRCFDLVTDGLKNCGKHDLA 316
            PN   YTMLI      G   EA   L E+   G     + R F     G+ NC + +  
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHF-----GISNCTQENGK 652

Query: 317 EKIE 320
           +K E
Sbjct: 653 QKCE 656



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 137/301 (45%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+EV ++ +   C     +Y+ +L A C    F  +  ++  M  KG
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L++++  G    +   + +++GL  A      +
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++ +A    SEM  K  P + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M   G  P    +  V +G   C +  + E + LL
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 414

Query: 323 E 323
           +
Sbjct: 415 K 415



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 2/238 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  T+  +V   C+ G++ +A E L EMS KG  P      ++++    +G   ++ ++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M  +G  LD    N ++  IC+ G V+  V +   +   G  AD+ +Y  ++  +  
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           A    +   L+  +V     P    +  +I  + R G F+      ++M   G  P+  +
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           Y  +I    + G    A   L  M   GL P   C++ V  GL  C      E  ELL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL--CSAERWKEAEELL 344



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T + +I    K GLV+ A+E                                   L+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIE-----------------------------------LL 484

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           ++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L   
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +    QM + +       D   +N++I ++CK  E +  ++ +  +   G   + STY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +LI  ++  G+  EA  LL  L   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G V+  +++F+       +   +LYN+++ +LC+     
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A      M+  G +P++ TY +L+    S G  +EAQE L E+  +G
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     ++     +L++    + G VD AV +  K   F C+  ++ YN++L  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 63  CEVK-----------------------------------LFHGAYALIRRMIRKGFVPDK 87
           C  K                                   LF   + ++ +M   G  PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R YA +++  C  G +  A E L  M   G  P V   + +++GL +A   + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++   LD  TFN L++  C++G V+  +E+   +   G   DV TY  +I    K G+
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  LL ++   G KP    Y  ++KG+   G++ DA    S+M  +G PPN   +  
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           LI    + G   +A   L +M   G +P    +  V DGL   GK +  E +ELL V
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE--EALELLNV 521



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 138/274 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +  +  C   V+ Y +++   C+  L   A  L++ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+G+  +A+E + +M  +G  P     + L+  L   G +
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G +++  ++  N+ +   +    LY  +I  + +R + D A  FF+ M   G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            PN   YTMLI      G   EA   L E+   G
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 149/334 (44%), Gaps = 35/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II+   K G ++ A E+ N+  ++  +  V+ YN++L  LC  + +  A  L+  M +
Sbjct: 290 ATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ 349

Query: 81  K-----------------------------------GFVPDKRTYAILVNAWCSSGKMRE 105
           K                                   G +PD  TY  ++N +C  G + E
Sbjct: 350 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDE 409

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ MS  G  P      ++++GL +AG    A++++++MI+QG   +  TFN+LI 
Sbjct: 410 AVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  +EA  LL+ +V  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y+ I   + R G+ +     F  +K      +  +Y  +I+   +      A ++ 
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             M   G  P    + ++  GL + G    A+++
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQEL 623



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 137/301 (45%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+EV ++ +   C     +Y+ +L A C    F  +  ++  M  KG
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L++++  G    +   + +++GL  A      +
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++ +A    SEM  K  P + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M   G  P    +  V +G   C +  + E + LL
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 414

Query: 323 E 323
           +
Sbjct: 415 K 415



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 2/238 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  T+  +V   C+ G++ +A E L EMS KG  P      ++++    +G   ++ ++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M  +G  LD    N ++  IC+ G V+  V +   +   G  AD+ +Y  ++  +  
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           A    +   L+  +V     P    +  +I  + R G F+      ++M   G  P+  +
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           Y  +I    + G    A   L  M   GL P   C++ V  GL  C      E  ELL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL--CSAERWKEAEELL 344



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T + +I    K GLV+ A+E                                   L+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIE-----------------------------------LL 484

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           ++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L   
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +    QM + +       D   +N++I ++CK  E +  ++ +  +   G   + STY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +LI  ++  G+  EA  LL  L   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G V+  +++F+       +   +LYN+++ +LC+     
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A      M+  G +P++ TY +L+    S G  +EAQE L E+  +G
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     ++     +L++    + G VD AV +  K   F C+  ++ YN++L  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 63  CEVK-----------------------------------LFHGAYALIRRMIRKGFVPDK 87
           C  K                                   LF   + ++ +M   G  PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R YA +++  C  G +  A E L  M   G  P V   + +++GL +A   + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++   LD  TFN L++  C++G V+  +E+   +   G   DV TY  +I    K G+
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  LL ++   G KP    Y  ++KG+   G++ DA    S+M  +G PPN   +  
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           LI    + G   +A   L +M   G +P    +  V DGL   GK +  E +ELL V
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE--EALELLNV 521



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 138/274 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +  +  C   V+ Y +++   C+  L   A  L++ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+G+  +A+E + +M  +G  P     + L+  L   G +
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G +++  ++  N+ +   +    LY  +I  + +R + D A  FF+ M   G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            PN   YTMLI      G   EA   L E+   G
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 149/334 (44%), Gaps = 35/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II+   K G ++ A E+ N+  ++  +  V+ YN++L  LC  + +  A  L+  M +
Sbjct: 290 ATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQ 349

Query: 81  K-----------------------------------GFVPDKRTYAILVNAWCSSGKMRE 105
           K                                   G +PD  TY  ++N +C  G + E
Sbjct: 350 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDE 409

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ MS  G  P      ++++GL +AG    A++++++MI+QG   +  TFN+LI 
Sbjct: 410 AVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLIN 469

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  +EA  LL+ +V  G  P
Sbjct: 470 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y+ I   + R G+ +     F  +K      +  +Y  +I+   +      A ++ 
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             M   G  P    + ++  GL + G    A+++
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQEL 623



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 137/301 (45%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+EV ++ +   C     +Y+ +L A C    F  +  ++  M  KG
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L++++  G    +   + +++GL  A      +
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++ +A    SEM  K  P + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M   G  P    +  V +G   C +  + E + LL
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 414

Query: 323 E 323
           +
Sbjct: 415 K 415



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 2/238 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  T+  +V   C+ G++ +A E L EMS KG  P      ++++    +G   ++ ++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M  +G  LD    N ++  IC+ G V+  V +   +   G  AD+ +Y  ++  +  
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           A    +   L+  +V     P    +  +I  + R G F+      ++M   G  P+  +
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           Y  +I    + G    A   L  M   GL P   C++ V  GL  C      E  ELL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL--CSAERWKEAEELL 344



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T + +I    K GLV+ A+E                                   L+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIE-----------------------------------LL 484

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           ++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L   
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +    QM + +       D   +N++I ++CK  E +  ++ +  +   G   + STY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +LI  ++  G+  EA  LL  L   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G V+  +++F+       +   +LYN+++ +LC+     
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A      M+  G +P++ TY +L+    S G  +EAQE L E+  +G
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 37/357 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     ++     +L++    + G VD AV +  K   F C+  ++ YN++L  L
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 63  CEVK-----------------------------------LFHGAYALIRRMIRKGFVPDK 87
           C  K                                   LF   + ++ +M   G  PD 
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R YA +++  C  G +  A E L  M   G  P V   + +++GL +A   + A++++++
Sbjct: 287 RMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSE 346

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++   LD  TFN L++  C++G V+  +E+   +   G   DV TY  +I    K G+
Sbjct: 347 MFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGL 406

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  LL ++   G KP    Y  ++KG+   G++ DA    S+M  +G PPN   +  
Sbjct: 407 IDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNT 466

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           LI    + G   +A   L +M   G +P    +  V DGL   GK +  E +ELL V
Sbjct: 467 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE--EALELLNV 521



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +  +  C   V+ Y +++   C+  L   A  L++ M
Sbjct: 358 TFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+G+  +A+E + +M  +G  P     + L+  L   G +
Sbjct: 418 SSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 478 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSI 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G +++  ++  N+ +   +    LY  +I  + +R + D A  FF+ M   G 
Sbjct: 538 ACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGC 597

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL--TPISRCFDLVTDGLKNCGKHDLA 316
            PN   YTMLI      G   EA   L E+   G     + R F     G+ NC + +  
Sbjct: 598 MPNESTYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHF-----GISNCTQENGK 652

Query: 317 EKIE 320
           +K E
Sbjct: 653 QKCE 656



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 137/301 (45%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+EV ++ +   C     +Y+ +L A C    F  +  ++  M  KG
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L++++  G    +   + +++GL  A      +
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++ +A    SEM  K  P + 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M   G  P    +  V +G   C +  + E + LL
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 414

Query: 323 E 323
           +
Sbjct: 415 K 415



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 2/238 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  T+  +V   C+ G++ +A E L EMS KG  P      ++++    +G   ++ ++
Sbjct: 109 PNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRV 168

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M  +G  LD    N ++  IC+ G V+  V +   +   G  AD+ +Y  ++  +  
Sbjct: 169 LEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCM 228

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           A    +   L+  +V     P    +  +I  + R G F+      ++M   G  P+  +
Sbjct: 229 AKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRM 288

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           Y  +I    + G    A   L  M   GL P   C++ V  GL  C      E  ELL
Sbjct: 289 YATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGL--CSAERWKEAEELL 344



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T + +I    K GLV+ A+E                                   L+
Sbjct: 460 NPVTFNTLINFLCKKGLVEQAIE-----------------------------------LL 484

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           ++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L   
Sbjct: 485 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSRE 544

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +    QM + +       D   +N++I ++CK  E +  ++ +  +   G   + STY
Sbjct: 545 GRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 604

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +LI  ++  G+  EA  LL  L   G
Sbjct: 605 TMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G V+  +++F+       +   +LYN+++ +LC+     
Sbjct: 524 NKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETD 583

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A      M+  G +P++ TY +L+    S G  +EAQE L E+  +G
Sbjct: 584 RAIDFFAYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 143/289 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A+   N   ++ CQ  V+ +N +L ++C    +  A   +  M
Sbjct: 284 TYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEM 343

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IRKG  P   T+ IL+N  C  G +  A + L++M   G  P     + L+  L     +
Sbjct: 344 IRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKM 403

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A + ++ M+ +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 404 ERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTV 463

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G  D+A +LL  +   G KP    Y+ ++ G+ R G+ D+A  FF +++  G 
Sbjct: 464 IDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGV 523

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  ++    +  + V A ++L  M   G  P    + ++ +GL
Sbjct: 524 KPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGL 572



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 149/304 (49%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE   K   V  A+++ ++     C+  V+ YN L+  +C+      A   +  M
Sbjct: 249 TYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHM 308

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  T+ I++ + CS+G+  +A++FL EM  KG +P V   ++L+  L   G +
Sbjct: 309 PSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLI 368

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ KM + G   +  ++N L+  +CK  ++E  +E    +   G   D+ TY  L
Sbjct: 369 GRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTL 428

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G +D A  +L+ L   G  P    Y  +I G+ + G+ DDA     EMK KG 
Sbjct: 429 LTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGL 488

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+    R G+  EA  +  ++ EMG+ P +  ++ +  GL  C        
Sbjct: 489 KPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL--CKARQTVRA 546

Query: 319 IELL 322
           I+ L
Sbjct: 547 IDFL 550



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 153/321 (47%), Gaps = 6/321 (1%)

Query: 2   WKTIELMKPYNLSVS-PQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           WK   +M+    S + P   T +++I  + K G + +A+++ ++    +    V+ YN++
Sbjct: 162 WKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDR---MSVSPDVVTYNTI 218

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           L  LC+      A  ++ R +++   PD  TY IL+ A C    + +A + L EM DKG 
Sbjct: 219 LRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGC 278

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   ++L+ G+   G L+ A + +N M   G   ++ T N ++ ++C +G      +
Sbjct: 279 KPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEK 338

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
               + + G    V T+ ILI  + + G+I  A  +L  + + G  P    Y P++  + 
Sbjct: 339 FLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALC 398

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           +  + + A  +   M  +G  P+   Y  L+T   + G+   A   L ++   G +P+  
Sbjct: 399 KDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLI 458

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            ++ V DGL   GK D A K+
Sbjct: 459 TYNTVIDGLSKVGKTDDAIKL 479



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 5/253 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            +  +  M+ +G +PD      L+   C +GK  +A   ++ + D G  P V   ++L+ 
Sbjct: 129 GFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLIS 188

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G + SA Q++++M       D+ T+N+++ T+C SG+++  +E+     +     
Sbjct: 189 GYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYP 245

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV TY ILI A  K   + +A +LL  + + G KP    Y  +I G+ + G+ D+A  F 
Sbjct: 246 DVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFL 305

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           + M   G  PN   + +++      GR+++A  +L EM   G +P    F+++ + L  C
Sbjct: 306 NHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFL--C 363

Query: 311 GKHDLAEKIELLE 323
            K  +   I++LE
Sbjct: 364 RKGLIGRAIDVLE 376



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 5/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++   SL+  LC+      A  ++  +   G VPD  TY +L++ +C +G++  A + L 
Sbjct: 145 IIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSALQLLD 204

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            MS    +P V   + +++ L ++G L+ A +++++ +++    D+ T+  LIE  CK  
Sbjct: 205 RMS---VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKES 261

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   +++   +   G   DV TY +LI  + K G +DEA R L+++   G +P    + 
Sbjct: 262 GVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHN 321

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I++ M   G++ DA  F +EM  KG  P+   + +LI    R G    A + L +M + 
Sbjct: 322 IILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQH 381

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G TP S  ++ +   L  C    +   IE L++
Sbjct: 382 GCTPNSLSYNPLLHAL--CKDKKMERAIEYLDI 412



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 122/244 (50%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T +++I    + GL+  A++V  K     C    L YN LL ALC+ K    A  
Sbjct: 349 SPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIE 408

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  M+ +G  PD  TY  L+ A C  GK+  A E L ++  KG +P +   + ++ GL 
Sbjct: 409 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLS 468

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A +++++M  +G   D+ T+++L+  + + G+V+  +  ++ + ++G+  +  
Sbjct: 469 KVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAI 528

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  ++  + KA     A   L  +V  G KP  + Y  +I+G+   G   +A    +E+
Sbjct: 529 TYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNEL 588

Query: 254 KIKG 257
             +G
Sbjct: 589 CSRG 592



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     ++    K   ++ A+E  +   +  C   ++ YN+LL ALC+     
Sbjct: 385 PNSLSYNP-----LLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 439

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++ ++  KG  P   TY  +++     GK  +A + L EM  KG  P +     LV
Sbjct: 440 VAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLV 499

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G ++ A    + + + G   +  T+NS++  +CK+ +    ++    +   G  
Sbjct: 500 GGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCK 559

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
              ++Y ILI  ++  G+  EA  LL+ L   G
Sbjct: 560 PTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 5/191 (2%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M+ +G + D+    SLI  +CK+G+      +   +   G   D
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY +LI    K G I  A +LL  +      P    Y  I++ +   G+  +A     
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
               +   P+   YT+LI    +     +A   L EM + G  P    ++++ +G+  C 
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGI--CK 294

Query: 312 KHDLAEKIELL 322
           +  L E I  L
Sbjct: 295 EGRLDEAIRFL 305



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ MK   L     T S ++    + G VD A+  F+       +   + YNS++  L
Sbjct: 478 KLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGL 537

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +    A   +  M+ +G  P + +Y IL+      G  +EA E L E+  +G     
Sbjct: 538 CKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKS 597

Query: 123 RGRDLLVQGLLNAGYL 138
               ++V+   N  Y 
Sbjct: 598 SAEQVVVKIPFNVFYF 613


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 148/292 (50%), Gaps = 1/292 (0%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I+E    G    A+E++N+     CQ     YN L+ +LC       A  L+R M   G 
Sbjct: 286 IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGC 345

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
             +  TY  L++ +C + K+ EA+E   +M  +G +      + L+ GL  +  ++ A Q
Sbjct: 346 ARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQ 405

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           ++++MI +G   D  T+NS++   C+ G+++   ++  ++   G   D+ TY  LI  + 
Sbjct: 406 LMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLC 465

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           KAG ++ A RLL ++   G    P  Y P+I+ +F+R +  +A   F EM+ KG+ P+  
Sbjct: 466 KAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAF 525

Query: 264 VYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            Y ++   +   GG   EA ++++EM E G  P    F ++ +GL +    D
Sbjct: 526 TYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMED 577



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 2/214 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K+  ++ A E+F++       +  + YN+L+  LC+ +    A  L+ +M
Sbjct: 351 TYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQM 410

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PDK TY  ++  +C  G +++A + +Q M+  G  P +     L+ GL  AG +
Sbjct: 411 IMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRV 470

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++  +  +G VL    +N +I+ + K    +  + ++  + + G   D  TYKI+
Sbjct: 471 EVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIV 530

Query: 199 IPAVSKA-GMIDEAFRLLHNLVEDGHKP-FPSLY 230
              +S + G I EA   +  ++E G  P F S Y
Sbjct: 531 FRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFY 564



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 136/317 (42%), Gaps = 27/317 (8%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNA---VEVFNKCTAFNCQQCVLLYNS 57
           M   ++ MK  +  +    L + I+ + K  L +     VEV      F      LLYN 
Sbjct: 106 MKDILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVME--VEFGLALDTLLYNF 163

Query: 58  LLFALCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           LL  L +   +KL    ++    M+ KG  PD  T+ IL+ A C + ++R A   ++EMS
Sbjct: 164 LLNVLVDGNKLKLVENVHS---TMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMS 220

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P  +    L+QG +  G ++ A ++  +M+  G  +   T N L+   CK G +E
Sbjct: 221 SYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIE 280

Query: 175 ----------------FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
                             +E+Y  +   G   D  TY +LI ++   G + EA  LL  +
Sbjct: 281 EALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREM 340

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G       Y  +I G  +  + ++A   F +M+I+G   N   Y  LI    +  R 
Sbjct: 341 EISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRV 400

Query: 279 VEAANYLVEMTEMGLTP 295
            EAA  + +M   GL P
Sbjct: 401 QEAAQLMDQMIMEGLKP 417



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 102/246 (41%), Gaps = 11/246 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +  T + +I+   K   V  A ++ ++      +     YNS+L   C    
Sbjct: 375 MEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGD 434

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M   G  PD  TY  L+   C +G++  A   L+ +  KG        + 
Sbjct: 435 IQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNP 494

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-----EVEFCVEMYYS 182
           ++Q L      + A ++  +M ++G   D  T+  +   +  SG      V+F +EM   
Sbjct: 495 VIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEM--- 551

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             + G   + S++ +L   +    M D   +L+  ++E  +  F      +I+G  +  +
Sbjct: 552 -IEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEKAN--FSQNEVVMIRGFLKIRK 608

Query: 243 FDDAFC 248
           F DA  
Sbjct: 609 FQDALA 614



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 5/213 (2%)

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV-RGRDLL-VQGLLNAGYLES 140
           F P+   Y  ++      G     ++ LQEM  KG +  + RG  L+ +         E 
Sbjct: 83  FRPNSSIYEEILRKLGKVGSFNSMKDILQEM--KGLDCQIDRGVLLIFIDSYAKFELYEE 140

Query: 141 AKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              +V  M ++ G  LD   +N L+  +    +++    ++ ++   G+  DVST+ ILI
Sbjct: 141 ILCIVEVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILI 200

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ KA  I  A  ++  +   G  P    +  +++G    G  D AF    +M   G P
Sbjct: 201 KALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCP 260

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
                  +L+    + GR  EA +++ EM+  G
Sbjct: 261 VTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEG 293


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 147/289 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+++ F K G +D A+ +F +      Q  V+ YN LL ALC       A  L  +M
Sbjct: 172 TYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKM 231

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY+ LVN    SG++ EA +  +EM D+G    +   + L+  L  AG +
Sbjct: 232 TGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNM 291

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++ +M ++GF  D  +FN++++ + K+ + +   E++  + + G   D+ +Y IL
Sbjct: 292 DRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNIL 351

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I + ++ G   +A ++L  +VE G  P    Y  +I  +   GQ D+AF    EM+  G 
Sbjct: 352 IDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGC 411

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+ M G+ G    AA    +M + G+ P +  + +  DGL
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGL 460



 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 146/305 (47%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           + P TL  +I  +G+     +A ++FN+  +F C   V  +  L+  L     F  A  +
Sbjct: 28  LRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELV 87

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            +++++KG   D+  Y +L+  +  SG++  A E  +EM  KG  P       LV  L  
Sbjct: 88  YKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGK 147

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           AG ++ A+   + M+++G   ++ T+N L++   K G+++  + ++  + + G    V T
Sbjct: 148 AGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVT 207

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y IL+ A+  AG +  A +L H +  DG  P    Y+ ++ G+ + G+ ++A   F EM 
Sbjct: 208 YNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMV 267

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G   +   Y  L+    + G        + EM+  G  P +  F+ + D L    K D
Sbjct: 268 DRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPD 327

Query: 315 LAEKI 319
            A ++
Sbjct: 328 AAREV 332



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 145/296 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  FG+ G +D+A+E+F +      +     Y  L+ AL +      A +    M+ 
Sbjct: 104 NVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLE 163

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  P+  TY +L++A+   G++  A     EM  +GF P V   ++L+  L +AG + +
Sbjct: 164 RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGA 223

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ +KM   G   D  T+++L+  + KSG VE   +++  +   G+  D+  Y  L+ 
Sbjct: 224 ARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLA 283

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            ++KAG +D  ++L+  +   G  P    +  I+  + +  + D A   F+ M   G  P
Sbjct: 284 TLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKP 343

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +   Y +LI    R G   +A   L EM E G  P ++ ++ +   L   G+ D A
Sbjct: 344 DLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEA 399



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 124/258 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++   GK G V+ A +VF +         ++ YNSLL  L +       + L++ M
Sbjct: 242 TYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEM 301

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKGF PD  ++  +++A   + K   A+E    M + G  P +   ++L+      G  
Sbjct: 302 SRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA 361

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+QM+ +M++ GF+ + +T+NSLI  +   G+V+    +   +   G   DV TY  L
Sbjct: 362 AQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRL 421

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G    A RL   + + G +P    YA  I G+    + D+A   F +MK  G 
Sbjct: 422 MDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGC 481

Query: 259 PPNRPVYTMLITMCGRGG 276
           P ++ +Y +LI    R G
Sbjct: 482 PVDKAMYRILIRAAHRAG 499



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L++ M+ +G      T   L+ A+    K  +A +   +      +P V     L+  L+
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           N+G  E A+ +  K++++G  LD   +N LI    +SG+++  +EM+  +   G   D  
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  L+ A+ KAG + EA      ++E G  P    Y  ++    + GQ D A   F+EM
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           K +G  P+   Y +L+      GR   A     +MT  G +P S  +  + +GL   G+ 
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256

Query: 314 DLAEKI 319
           + A K+
Sbjct: 257 EEAHKV 262



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 83/185 (44%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L + G L+  + ++ +M+ +G  L   T   LI    +  +     +++           
Sbjct: 5   LASWGILDPLETLLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPT 64

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  +  LI  +  +G  + A  +   LV+ G +     Y  +I+   R GQ D A   F 
Sbjct: 65  VHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFR 124

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EMKIKG  P+   Y  L+   G+ GR  EA ++   M E GLTP    ++L+ D  +  G
Sbjct: 125 EMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVG 184

Query: 312 KHDLA 316
           + D+A
Sbjct: 185 QLDMA 189



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 99/216 (45%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK ++ M          + + I++  GK    D A EVF +     C+  ++ YN L+ 
Sbjct: 294 VWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILID 353

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +         A  ++  M+  GF+P+ +TY  L++   + G++ EA   L+EM   G  P
Sbjct: 354 SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRP 413

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + L+  L   G  + A ++  +M  +G   D  ++   I+ +     ++  + ++
Sbjct: 414 DVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLF 473

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
             +  +G   D + Y+ILI A  +AG  +   +L H
Sbjct: 474 KDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKH 509


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 157/341 (46%), Gaps = 36/341 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M   + S +  T + II    K   VD A E+    T+      V  +NSL+  L
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C       A  L   M  KG  PD+ TY +L+++ CSS K+ EA   L+EM   G     
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNV 483

Query: 118 --FNPPVRG-----------------------RD-----LLVQGLLNAGYLESAKQMVNK 147
             +N  + G                       RD      L+ GL  +  +E A Q++++
Sbjct: 484 VIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQ 543

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           MI +G   D  T+NSL+   CK+G+++   ++  ++   G   D+ TY  LI  + KAG 
Sbjct: 544 MIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGR 603

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +  A RLL ++   G    P  Y P+I+ +F+R +  +A   F EM  K  PP+   Y +
Sbjct: 604 VQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKI 663

Query: 268 LIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +   +C  GG   EA ++ VEM E G  P    F ++ +GL
Sbjct: 664 VYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGL 704



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 145/319 (45%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y LS    T + I++ + + G +D A+ +  +   + C    +  N L+   C+
Sbjct: 226 MEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCK 285

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A + I+  + +GF PD+ TY  LVN  C  G  + A E +  M   G +P +  
Sbjct: 286 QGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYT 345

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL   G +E A +++++M+ +    +  T+N++I ++CK   V+   E+   + 
Sbjct: 346 YNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLT 405

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+  LI  +  +     A  L   +   G +P    Y  +I  +    + +
Sbjct: 406 SKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLE 465

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM++ G   N  +Y  LI    +  R  EA     EM   G++  S  ++ + 
Sbjct: 466 EALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    + +  +L++
Sbjct: 526 DGL--CKSKRVEDAAQLMD 542



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 141/316 (44%), Gaps = 4/316 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I+   K   V  A+ +  +  ++        + +++    E     GA  +  +
Sbjct: 204 STFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQ 263

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G      T  +L+N +C  G++ +A  F+QE   +GF P     + LV GL   G+
Sbjct: 264 MVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGH 323

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A ++V+ M+  G   D+ T+NSLI  +CK GE+E  V++   +       +  TY  
Sbjct: 324 AKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNA 383

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I ++ K   +DEA  +   L   G  P    +  +I+G+        A   F EMK KG
Sbjct: 384 IISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKG 443

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y MLI       +  EA N L EM   G       ++ + DG     + + AE
Sbjct: 444 CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAE 503

Query: 318 KI----ELLEVSLRSV 329
           +I    EL  VS  SV
Sbjct: 504 EIFDEMELQGVSRDSV 519



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 133/279 (47%), Gaps = 2/279 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ AV++ ++  + +C    + YN+++ +LC+      A  + R +
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL 404

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  T+  L+   C S   + A +  +EM  KG  P     ++L+  L ++  L
Sbjct: 405 TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKL 464

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M   G   ++  +N+LI+  CK+  +E   E++  +   G+  D  TY  L
Sbjct: 465 EEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTL 524

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  +++A +L+  ++ +G +P    Y  ++    + G    A      M   G 
Sbjct: 525 IDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGC 584

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL--VEMTEMGLTP 295
            P+   Y  LI+   + GR   A+  L  ++M  M LTP
Sbjct: 585 NPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTP 623



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 137/290 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M  Y    +  T++++I  F K G +D A+    +  +   +     YN+L+  LC++
Sbjct: 262 EQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKI 321

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M+  G  PD  TY  L++  C  G++ EA + L +M  +  +P     
Sbjct: 322 GHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTY 381

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++  L     ++ A ++   +  +G + D+ TFNSLI+ +C S   +  ++++  +  
Sbjct: 382 NAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKG 441

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D  TY +LI ++  +  ++EA  LL  +  +G      +Y  +I G  +  + ++
Sbjct: 442 KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEE 501

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A   F EM+++G   +   Y  LI    +  R  +AA  + +M   GL P
Sbjct: 502 AEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRP 551



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 139/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G   +A+EV +          +  YNSL+  LC++     A  ++ +M
Sbjct: 310 TYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQM 369

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   P+  TY  ++++ C   ++ EA E  + ++ KG  P V   + L+QGL  +   
Sbjct: 370 VSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNH 429

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA  +  +M  +G   D  T+N LI+++C S ++E  + +   +   G   +V  Y  L
Sbjct: 430 KSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTL 489

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   I+EA  +   +   G       Y  +I G+ +  + +DA     +M ++G 
Sbjct: 490 IDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGL 549

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   + G   +AA+ +  MT  G  P    +  +  GL   G+  +A +
Sbjct: 550 RPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASR 609

Query: 319 I 319
           +
Sbjct: 610 L 610



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 134/321 (41%), Gaps = 9/321 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           M + +E MK            + +E +GK  L D  V +       +  +     YN LL
Sbjct: 116 MRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLL 175

Query: 60  FALCE---VKLFHGAYA-LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
             L +   +KL   A++ ++RR IR     D  T+ IL+ A C + ++R A   ++EM  
Sbjct: 176 NVLVDANKLKLVESAHSSMVRRRIRH----DVSTFNILIKALCKAHQVRPAILMMEEMPS 231

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G +P       ++QG +  G L+ A ++  +M++ G      T N LI   CK G ++ 
Sbjct: 232 YGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQ 291

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            +         G   D  TY  L+  + K G    A  ++  ++  G  P    Y  +I 
Sbjct: 292 ALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLIS 351

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+ ++A     +M  +   PN   Y  +I+   +  R  EA      +T  G+ P
Sbjct: 352 GLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILP 411

Query: 296 ISRCFDLVTDGLKNCGKHDLA 316
               F+ +  GL     H  A
Sbjct: 412 DVCTFNSLIQGLCLSSNHKSA 432



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 2/242 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD R Y +L+N    + K++  +     M  +     V   ++L++ L  A  +  A  M
Sbjct: 166 PDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILM 225

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL-CADVSTYKILIPAVS 203
           + +M   G   D  TF ++++   + G ++  + +   + + G  C DV T  +LI    
Sbjct: 226 MEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDV-TVNVLINGFC 284

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G ID+A   +   V +G +P    Y  ++ G+ + G    A      M + G  P+  
Sbjct: 285 KQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIY 344

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            Y  LI+   + G   EA   L +M     +P +  ++ +   L    + D A +I  L 
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLL 404

Query: 324 VS 325
            S
Sbjct: 405 TS 406


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  141 bits (356), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 150/319 (47%), Gaps = 2/319 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    M+   +S    T S +IE + K   +++A +V  +     C   V+ YN+L+  
Sbjct: 228 WKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGG 287

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A+   + M   G VPD  TY  ++N  C  G+  +A+  L EMS  G  P 
Sbjct: 288 LCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPN 347

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ G +  G  + A ++V +M   G   +  T+++LI  +CK G +     +  
Sbjct: 348 VVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILK 407

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K+G  AD  TY ++I    +    +EAF LL+ + + G  P    Y+ II G+ + G
Sbjct: 408 QMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIG 467

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + + A     +M   G  PN  VY  LI+   R G F  A   L +MT   LTP   C++
Sbjct: 468 ESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYN 527

Query: 302 LVTDGLKNCGKHDLAEKIE 320
            +  GL N GK D  E IE
Sbjct: 528 SLIIGLSNVGKMD--EAIE 544



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 129/299 (43%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+ F + G  D A ++  + +A   Q   + Y++L+  LC++     A  ++++M +
Sbjct: 352 STLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTK 411

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G++ D  TY +++          EA   L EM   G +P V    +++ GL   G  E 
Sbjct: 412 IGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESER 471

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +MI  G   +   +  LI   C+ G      E    + +  L  D+  Y  LI 
Sbjct: 472 ASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLII 531

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +S  G +DEA      ++E G +P    Y  +I G    G  + A     +M   G  P
Sbjct: 532 GLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNP 591

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           N  +Y  ++    +     + ++ L  M E GL P +R + +V   L + G    A  +
Sbjct: 592 NDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSV 650



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 146/352 (41%), Gaps = 43/352 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP     +P     +I  + + G    A E   K T  N    +  YNSL+  L  V  
Sbjct: 484 LKPNAFVYAP-----LISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGK 538

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP------- 120
              A      M+ KGF P+  TY  L++ +  +G + +A++ L +M + G NP       
Sbjct: 539 MDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQ 598

Query: 121 ----------------------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
                                         R   +++  L ++G++++A  +++ + K G
Sbjct: 599 ILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG 658

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D   + SLI   CK+ ++E  V +   + K G+   +S Y  LI    K+  I  A 
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHAR 718

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            + ++++  G  P    Y  +I G  + G   DA   ++EM  +G  P+  VY++L   C
Sbjct: 719 NIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGC 778

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
              G   +A     EM   G   IS  F+ +  G   C +  L E ++ L V
Sbjct: 779 SNSGDLQQALFITEEMIARGYAIIS-SFNTLVHGF--CKRGKLQETVKFLHV 827



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+IE   +    + A  + N+         V  Y+ ++  LC++     A  L+ +M
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQM 479

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G  P+   YA L++ +C  G    A E L++M+ +   P +   + L+ GL N G +
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +  ++M+++GF  +  T+  LI     +G +E   ++ + +   GL  +   Y  +
Sbjct: 540 DEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQI 599

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K+  +++    L +++E G  P   LY  +I  +   G    A    S ++  G 
Sbjct: 600 LEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGL 659

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+  +Y  LI+   +     +A   L EM + G+ P   C++ + DG   C   D++ 
Sbjct: 660 VPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGF--CKSDDISH 716



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 130/283 (45%), Gaps = 18/283 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVP----------------DKRTYA--ILVNA 96
           +  L  +LC   L+  A  L+ +MIR    P                 +R     +LV+ 
Sbjct: 123 FAHLAVSLCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSDQGRRPVVLDVLVDT 182

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  +G++R+  E +  M D G  P +R  + L++ LL A  L+   ++   M   G   D
Sbjct: 183 YKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPD 242

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           + T+++LIE  CK  ++E   ++   + + G   +V TY  LI  + +AG I+EAF    
Sbjct: 243 VYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKK 302

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + + G  P    Y  II G+ +RG+ D A C   EM   G  PN  VY+ LI    R G
Sbjct: 303 EMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQG 362

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              EA   + EM+  G+ P    +D +  GL   G+   A +I
Sbjct: 363 NADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRI 405



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 115/253 (45%), Gaps = 16/253 (6%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   ++ AV + ++      +  +  YN+L+   C+      A  +   +I KG
Sbjct: 669 LISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKG 728

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L++ +C +G +R+A +   EM  +G  P      +L  G  N+G L+ A 
Sbjct: 729 LPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQAL 788

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +MI +G+ + + +FN+L+   CK G+++  V+  + +    +   + T + ++  +
Sbjct: 789 FITEEMIARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGL 847

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG + EA  +   L +              K    R   D     F++M  +G  P  
Sbjct: 848 GEAGKLSEAHTIFVELQQ--------------KNASHR-DTDHLSSLFTDMINQGLVPLD 892

Query: 263 PVYTMLITMCGRG 275
            ++ M+ + C +G
Sbjct: 893 VIHNMIQSHCKQG 905



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 22/189 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K G + +A++++N+           +Y+ L            A  +   M
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G+     ++  LV+ +C  GK++E  +FL  M DK   P +   + +V GL  AG L
Sbjct: 795 IARGYAI-ISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKL 853

Query: 139 ESA--------------------KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
             A                      +   MI QG V  L+  +++I++ CK G ++  + 
Sbjct: 854 SEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLV-PLDVIHNMIQSHCKQGYLDKALM 912

Query: 179 MYYSVCKLG 187
           ++ ++   G
Sbjct: 913 LHDALVAKG 921


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 153/299 (51%), Gaps = 2/299 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  LV+ A +++++  A      V+ YN+L+ A C      GA++L+  MI 
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   PD  T++IL++A C  GK   A++    M   G NP V   ++++ GL     ++ 
Sbjct: 214 KNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 271

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +M+ +  V D  T+NSLI+ +CKSG +   + +   +   G  ADV TY  L+ 
Sbjct: 272 AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLD 331

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A+ K   +D+A  L   + E G +P    Y  +I G+ + G+  +A   F  + +KG   
Sbjct: 332 ALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCI 391

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   YT++I+   + G F EA     +M + G  P +  F+++   L    ++D AEK+
Sbjct: 392 DVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKL 450



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 118/246 (47%), Gaps = 2/246 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++    T S++I+   K G   NA ++F+          V  YN ++  LC+ K    A
Sbjct: 215 NINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 272

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+R M+ K  VPD  TY  L++  C SG++  A   + EM  +G    V     L+  
Sbjct: 273 MNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 332

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     L+ A  +  KM ++G    + T+ +LI+ +CK G ++   E++  +   G C D
Sbjct: 333 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 392

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY ++I  + K GM DEA  +   + ++G  P    +  II+ +F + + D A     
Sbjct: 393 VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 452

Query: 252 EMKIKG 257
           EM  KG
Sbjct: 453 EMIAKG 458



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 2/230 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y++++  LC+ KL + AY L   M  +   P+  TY  L+ A+C +G++  A   L 
Sbjct: 150 VVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLH 209

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP V    +L+  L   G  ++AKQ+ + M++ G   ++ ++N +I  +CK  
Sbjct: 210 EMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCK 267

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+  + +   +    +  D  TY  LI  + K+G I  A  L++ +   G       Y 
Sbjct: 268 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 327

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
            ++  + +    D A   F +MK +G  P    YT LI    +GGR   A
Sbjct: 328 SLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 377



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 144/315 (45%), Gaps = 4/315 (1%)

Query: 7   LMKPYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T++   +++     G V   +   +K  A   Q   + Y +LL  LC+
Sbjct: 68  LGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCK 127

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R +  +   P+   Y+ +++  C    + EA +   EM  +   P V  
Sbjct: 128 TGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVIT 187

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+     AG L  A  ++++MI +    D+ TF+ LI+ +CK G  +   ++++++ 
Sbjct: 188 YNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFHAMV 245

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++G+  +V +Y I+I  + K   +DEA  LL  ++     P    Y  +I G+ + G+  
Sbjct: 246 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT 305

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A    +EM  +G P +   YT L+    +     +A    ++M E G+ P    +  + 
Sbjct: 306 SALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALI 365

Query: 305 DGLKNCGKHDLAEKI 319
           DGL   G+   A+++
Sbjct: 366 DGLCKGGRLKNAQEL 380



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 128/267 (47%), Gaps = 6/267 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +N +L +L ++K +    +L ++M  KG   +  T +IL+N +C  G+M  +   L 
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLG 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G+ P       L++GL   G ++      +K++ Q F  +  ++ +L+  +CK+G
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-- 229
           E    +++   +       +V  Y  +I  + K  +++EA+ L   +  D  + FP++  
Sbjct: 130 ETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM--DAREIFPNVIT 187

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I      GQ   AF    EM +K   P+   +++LI    + G+   A      M 
Sbjct: 188 YNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMV 245

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +MG+ P    ++++ +GL  C + D A
Sbjct: 246 QMGVNPNVYSYNIMINGLCKCKRVDEA 272



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 83/177 (46%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T + +I+   K G + +A+ + N+         V+ Y SLL ALC+ +    A
Sbjct: 283 NMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKA 342

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            AL  +M  +G  P   TY  L++  C  G+++ AQE  Q +  KG    V    +++ G
Sbjct: 343 TALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISG 402

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           L   G  + A  + +KM   G + +  TF  +I ++ +  E +   ++ + +   GL
Sbjct: 403 LCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K+  +D A  +F K      Q  +  Y +L+  LC+      A  L + +
Sbjct: 325 TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 384

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG   D  TY ++++  C  G   EA     +M D G  P     +++++ L      
Sbjct: 385 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDEN 444

Query: 139 ESAKQMVNKMIKQGFV 154
           + A++++++MI +G +
Sbjct: 445 DKAEKLLHEMIAKGLL 460



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 52/111 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + +I+   K G + NA E+F       C   V  Y  ++  LC+  +
Sbjct: 349 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 408

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           F  A A+  +M   G +P+  T+ I++ +     +  +A++ L EM  KG 
Sbjct: 409 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 140/268 (52%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++  LC+ KL + AY L   M  +G  P+  TY+ L+  +C +G++ EA   L 
Sbjct: 150 VVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLN 209

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP V    +L+  L   G ++ AK ++  M K+G   ++ ++N+L++  C  G
Sbjct: 210 EMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIG 269

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV+   +M++++ + G+  +V +Y I+I  + K+  +DEA  LL  ++     P    Y+
Sbjct: 270 EVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYS 329

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  + G+   A     EM  +G P +   YT L+    +     +A    ++M E 
Sbjct: 330 SLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 389

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + DGL   G+H  A+K+
Sbjct: 390 GIQPNKYTYTALIDGLCKGGRHKNAQKL 417



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 128/259 (49%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV+ A +++++  A      V+ Y++L++  C       A+ L+  MI K 
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY IL++A C  GK++EA+  L  M+ +G  P V   + L+ G    G +++AK
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM + M+++G   ++ ++N +I+ +CKS  V+  + +   V    +  +  TY  LI   
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGF 335

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G I  A  LL  +   G       Y  ++  + +    D A   F +MK +G  PN+
Sbjct: 336 CKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNK 395

Query: 263 PVYTMLITMCGRGGRFVEA 281
             YT LI    +GGR   A
Sbjct: 396 YTYTALIDGLCKGGRHKNA 414



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 129/255 (50%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +N ++ +L ++K +  A +L ++M  KG  PD  T  IL+N +C  G+M  +   L 
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G+ P     + L++GL   G ++ +    +K++ QGF +D  ++ +L+  +CK G
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E    +++   +       +V  Y  +I  + K  +++EA+ L   +   G  P    Y+
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G    GQ  +AF   +EM +K   PN   YT+L+    + G+  EA N L  MT+ 
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 292 GLTPISRCFDLVTDG 306
           G+ P    ++ + DG
Sbjct: 250 GVKPNVVSYNTLMDG 264



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 134/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  F   G +  +  V  K      Q   +  N+L+  LC       +     ++
Sbjct: 47  TLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  D+ +YA L+N  C  G+ R A + L+ + D+   P V   + ++ GL     +
Sbjct: 107 VAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLV 166

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M  +G   ++ T+++LI   C +G++     +   +    +  +V TY IL
Sbjct: 167 NEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTIL 226

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G + EA  LL  + ++G KP    Y  ++ G    G+  +A   F  M  KG 
Sbjct: 227 MDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGV 286

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN   Y ++I    +  R  EA N L E+    + P +  +  + DG    G+
Sbjct: 287 NPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 123/258 (47%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T +++++   K G V  A  +    T    +  V+ YN+L+   C +     A
Sbjct: 215 NINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNA 274

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M++KG  P+  +Y I+++  C S ++ EA   L+E+  K   P       L+ G
Sbjct: 275 KQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDG 334

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G + SA  ++ +M  +G   D+ T+ SL++ +CK+  ++    ++  + + G+  +
Sbjct: 335 FCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPN 394

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI  + K G    A +L  +L+  G +     Y  +I G+ + G  D+A    S
Sbjct: 395 KYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKS 454

Query: 252 EMKIKGHPPNRPVYTMLI 269
           +M+  G  P+   + ++I
Sbjct: 455 KMEENGCIPDAVTFEIII 472



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 2/219 (0%)

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A    ++M  KG  P +   ++L+    + G +  +  ++ K++K G+  +  T N+L++
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +C  GEV+  +  +  V   G   D  +Y  L+  + K G    A +LL  + +   +P
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRP 148

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y  II G+ +    ++A+  +SEM  +G  PN   Y+ LI      G+ +EA   L
Sbjct: 149 NVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLL 208

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            EM    + P    + ++ D L  C +  + E   LL V
Sbjct: 209 NEMILKNINPNVYTYTILMDAL--CKEGKVKEAKNLLAV 245



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + +I+   K G   NA ++F       C+  V  YN ++  LC+  +
Sbjct: 386 MKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGM 445

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A A+  +M   G +PD  T+ I++ +     +  +A++ L EM  K     +R RD 
Sbjct: 446 LDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDL---LRFRDF 502

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV 154
              G  +    + A++++++MI +G +
Sbjct: 503 --HGERSPNENDKAEKLLHEMIAKGLL 527



 Score = 39.3 bits (90), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/148 (18%), Positives = 64/148 (43%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           FN ++ ++ K       + ++  +   G+  D+ T  ILI      G +  +F +L  ++
Sbjct: 13  FNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKIL 72

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G++P       ++KG+  +G+   +  F  ++  +G   ++  Y  L+    + G   
Sbjct: 73  KLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETR 132

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
            A   L  + +    P    ++ + DGL
Sbjct: 133 SALKLLRMIEDRSTRPNVVMYNTIIDGL 160


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  140 bits (354), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E ++PY +     + +++I    + G +D A E F     F C   ++ YN+L+   C V
Sbjct: 204 EHLEPYFVP-DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRV 262

Query: 66  KLFHGAYALIRR-MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 + L++  M+ KG  PD  TY  +++ +C  G M+ A E   EM   G  P    
Sbjct: 263 NEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFT 322

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+ G    G + SA  M  KM+  G + D+ TF SLI+  C+ GEV   ++++  + 
Sbjct: 323 FNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              L  +V TY +LI A+ K   I EA   L +L      P P +Y P+I G  + G+ D
Sbjct: 383 VRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVD 442

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    +EM+ K   P++  +T+LI      GR VEA +   +M E+   P     + + 
Sbjct: 443 EANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLI 502

Query: 305 DGLKNCGKHDLAEKIE 320
             L   G  + A +I+
Sbjct: 503 SCLLKAGMPNEASQIK 518



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 1/301 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L L++  + + G +D+A    N+   +  +    +YN+LL  L +  L   A  L R  +
Sbjct: 147 LELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHL 206

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
              FVPD  ++ IL+   C  G++ +A EF Q M + G  P +   + L+ G      + 
Sbjct: 207 EPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEIS 266

Query: 140 SAKQMVNK-MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++ + M+ +G   D+ T+ S+I   CK G+++   E++  +   G+  +  T+ +L
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL 326

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +  A  +   ++  G  P    +  +I G  R G+ +     + EMK++  
Sbjct: 327 IDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNL 386

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +LI    +  R  EA N+L  +    + P    ++ V DG    GK D A  
Sbjct: 387 SPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANF 446

Query: 319 I 319
           I
Sbjct: 447 I 447



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 3/270 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  LC+V L   A  +   M   G +PD     +LV+++   GK+  A+ FL E+ 
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVH 171

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G        + L+  L+    ++ A  +  + ++  FV D+ +FN LI  +C+ GE++
Sbjct: 172 CYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEID 231

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL-HNLVEDGHKPFPSLYAPI 233
              E + ++   G   D+ +Y  LI    +   I +   LL  +++  G  P    Y  I
Sbjct: 232 KAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSI 291

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G    A   F EM   G  PN   + +LI   G+ G    A     +M  +G 
Sbjct: 292 ISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGC 351

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    F  + DG   C + ++ + ++L E
Sbjct: 352 LPDVVTFTSLIDGY--CREGEVNQGLKLWE 379



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ FGK G + +A+ ++ K     C   V+ + SL+   C     +    L   M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TYA+L+NA C   ++REA+ FL+ +      P     + ++ G   AG +
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +V +M ++    D  TF  LI   C  G +   +  +Y + ++    D  T   L
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           I  + KAGM +EA ++    ++  +    SL +P+ +   R
Sbjct: 502 ISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPLTRKSSR 542



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 1/225 (0%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+   C  G    A+     M   G  P     +LLV      G L+SAK  +N++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G  +    +N+L+  + K   V+  V ++    +     DV ++ ILI  + + G I
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE-MKIKGHPPNRPVYTM 267
           D+AF    N+   G  P    Y  +I G  R  +         E M IKG  P+   YT 
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +I+   + G    A+    EM   G+ P    F+++ DG    G 
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335



 Score = 42.4 bits (98), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%)

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           +S   L +    +TY +L+  + K G+ D A  +   +  DG  P  S+   ++    R 
Sbjct: 98  FSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM 157

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A  F +E+   G   +  VY  L+ M  +     EA     E  E    P    F
Sbjct: 158 GKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSF 217

Query: 301 DLVTDGLKNCGKHDLA 316
           +++  GL   G+ D A
Sbjct: 218 NILIRGLCRIGEIDKA 233


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 156/308 (50%), Gaps = 2/308 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S SP   T +++I+ + K     +  ++  +   + C+   + YN+L+ +L +   +  A
Sbjct: 301 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA 360

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L + M+R+   P   T+ ++++ +C  G++  A E  Q M+D+G  P +   ++++ G
Sbjct: 361 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 420

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              A  ++ A+Q++ +M + G   D+ T+NS++  +CK+ +V+   E+Y  +   G   D
Sbjct: 421 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 480

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V T   LI  + K+  +D+A +LL  +  +G  P    Y  +I G  +  Q D +  FFS
Sbjct: 481 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 540

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  P    Y+++I    +  R  +    L  M E G+TP +  +  V DGL    
Sbjct: 541 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSD 600

Query: 312 KHDLAEKI 319
            +D A ++
Sbjct: 601 SYDEAYEL 608



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 140/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I+ F K G +D A E+F   T   C   +  YN ++   C       A  L+ RM
Sbjct: 378 TFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM 437

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  +V+  C + ++ EA E  + + + G+   V     L+ GL  +  L
Sbjct: 438 TEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRL 497

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++++ +M + G   D+  +  LI   CK+ +++  +  +  +   G    V TY I+
Sbjct: 498 DDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIV 557

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  + +   LL  ++E G  P   +Y  +I G+ +   +D+A+  +  MK  G 
Sbjct: 558 IDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGC 617

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    Y +L+    +  R  EA + L  M   G  P +  ++ V DG     +HD A +
Sbjct: 618 APTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFR 677

Query: 319 I 319
           +
Sbjct: 678 L 678



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 126/274 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I+    K   VD A EV+           V+  ++L+  LC+ +    A  L+R M
Sbjct: 448 TYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  PD   Y IL++ +C + ++ ++  F  EM DKG  P V    +++  L  +  +
Sbjct: 508 ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARV 567

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                ++  M+++G   D   + S+I+ +CKS   +   E+Y  + + G    V TY +L
Sbjct: 568 RDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVL 627

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   +DEA  LL  +  DG  P    Y  +  G ++  + D AF  F  MK +G 
Sbjct: 628 VDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGC 687

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P   +Y++L+T      +  +A     E  E G
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 21/337 (6%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHG----------LVDNAVEVFNKCTAFNCQQCVL--- 53
           L+  Y     PQ  + +++E  K+G          L+D+ V+      AFN  Q +L   
Sbjct: 312 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 371

Query: 54  ------LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                  +N ++   C+V     AY L + M  +G +PD  TY I+++  C + ++ +A+
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 431

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           + L+ M++ G  P V   + +V GL  A  ++ A ++   +   G+ LD+ T ++LI+ +
Sbjct: 432 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 491

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKS  ++   ++   + + G   DV  Y ILI    KA  +D++      +++ G  P  
Sbjct: 492 CKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTV 551

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I  + +  +  D       M  +G  P+  VYT +I    +   + EA      
Sbjct: 552 ITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKL 611

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           M + G  P    ++++ D L  C    L E I LLEV
Sbjct: 612 MKQTGCAPTVVTYNVLVDKL--CKVSRLDEAIHLLEV 646



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 133/296 (44%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N + S  T +++++   K   + +A  +        C   V+ YN+L+   C++     A
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEA 290

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L  +M+     PD  TY IL++ +C   + ++  + LQEM   G  P     + L+  
Sbjct: 291 VVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDS 350

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+ +G    A  +   M+++       TFN +I+  CK G+++   E++  +   G   D
Sbjct: 351 LVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPD 410

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY I+I    +A  ID+A +LL  + E G  P    Y  I+ G+ +  Q D+A+  + 
Sbjct: 411 IYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 470

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            ++  G+  +    + LI    +  R  +A   L EM   G  P    + ++  G 
Sbjct: 471 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 526



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 142/340 (41%), Gaps = 36/340 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F +      A ++F       C    + Y++L+   C+ + F  AY L+  M
Sbjct: 134 TCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEM 193

Query: 79  IRKGFVPDKR----------------------------------TYAILVNAWCSSGKMR 104
            ++G VP                                     TY ILV+A C S ++ 
Sbjct: 194 EKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCKSARIS 253

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A   L++M + G  P V   + L+ G    G ++ A  + N+M++     D+ T+N LI
Sbjct: 254 DASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILI 313

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           +  CK    +   ++   + K G   +  TY  L+ ++ K+G   +AF L   ++    K
Sbjct: 314 DGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 373

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    +  +I    + GQ D A+  F  M  +G  P+   Y ++I+   R  R  +A   
Sbjct: 374 PSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQL 433

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           L  MTE G  P    ++ +  GL  C    + E  E+ EV
Sbjct: 434 LERMTEAGCPPDVVTYNSIVSGL--CKASQVDEAYEVYEV 471



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 19/311 (6%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKCTA--------FNCQQCVLLYNSLLFALCEVKLF 68
           P  +  ++++      +D AV+ F+ CT         F C       N LL A    K  
Sbjct: 99  PSVVGRVLQQLDD---LDKAVKFFDWCTGQPGYKHSKFTC-------NCLLSAFVRKKKA 148

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             AY L +        PD  TY+ L+N +C +   ++A   L EM  +G  P     + +
Sbjct: 149 QEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTI 208

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL + G ++SA      M ++     + T+  L++ +CKS  +     +   + + G 
Sbjct: 209 IKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGC 267

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V TY  LI    K G +DEA  L + ++E+   P    Y  +I G  ++ +  D   
Sbjct: 268 APNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAK 327

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
              EM   G  PN   Y  L+    + G++++A N    M      P    F+L+ D   
Sbjct: 328 LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFC 387

Query: 309 NCGKHDLAEKI 319
             G+ DLA ++
Sbjct: 388 KVGQLDLAYEL 398



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 90/209 (43%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F K   +D ++  F++     C   V+ Y+ ++  LC+         L++ M+ 
Sbjct: 520 TILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLE 579

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  PD   Y  +++  C S    EA E  + M   G  P V   ++LV  L     L+ 
Sbjct: 580 RGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDE 639

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++  M   G + D  T+NS+ +   KS E +    ++ ++   G       Y +L+ 
Sbjct: 640 AIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLT 699

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            +     +D+A  +    +E G    P +
Sbjct: 700 KLVAEEKMDQAMEIWEEALEAGADVDPEI 728



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 2/151 (1%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P  +  + +I+   K    D A E++       C   V+ YN L+  LC+V     A 
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAI 641

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G +PD  TY  + + +  S +  +A    Q M  +G +P      LL+  L
Sbjct: 642 HLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKL 701

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
           +    ++ A ++  + ++ G  +D E   +L
Sbjct: 702 VAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E ++PY +     + +++I    + G +D A E F     F C   ++ YN+L+   C V
Sbjct: 204 EHLEPYFVP-DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRV 262

Query: 66  KLFHGAYALIRR-MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 + L++  M+ KG  PD  TY  +++ +C  G M+ A E   EM   G  P    
Sbjct: 263 NEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFT 322

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+ G    G + SA  M  KM+  G + D+ TF SLI+  C+ GEV   ++++  + 
Sbjct: 323 FNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMK 382

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              L  +V TY +LI A+ K   I EA   L +L      P P +Y P+I G  + G+ D
Sbjct: 383 VRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVD 442

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    +EM+ K   P++  +T+LI      GR VEA +   +M E+   P     + + 
Sbjct: 443 EANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSLI 502

Query: 305 DGLKNCGKHDLAEKIE 320
             L   G  + A +I+
Sbjct: 503 SCLLKAGMPNEASQIK 518



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 137/301 (45%), Gaps = 1/301 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L L++  + + G +D+A    N+   +  +    +YN+LL  L +  L   A  L R  +
Sbjct: 147 LELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHL 206

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
              FVPD  ++ IL+   C  G++ +A EF Q M + G  P +   + L+ G      + 
Sbjct: 207 EPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEIS 266

Query: 140 SAKQMVNK-MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++ + M+ +G   D+ T+ S+I   CK G+++   E++  +   G+  +  T+ +L
Sbjct: 267 KGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVL 326

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +  A  +   ++  G  P    +  +I G  R G+ +     + EMK++  
Sbjct: 327 IDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNL 386

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +LI    +  R  EA N+L  +    + P    ++ V DG    GK D A  
Sbjct: 387 SPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANF 446

Query: 319 I 319
           I
Sbjct: 447 I 447



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 3/270 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  LC+V L   A  +   M   G +PD     +LV+++   GK+  A+ FL E+ 
Sbjct: 112 YDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVH 171

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G        + L+  L+    ++ A  +  + ++  FV D+ +FN LI  +C+ GE++
Sbjct: 172 CYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEID 231

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL-HNLVEDGHKPFPSLYAPI 233
              E + ++   G   D+ +Y  LI    +   I +   LL  +++  G  P    Y  I
Sbjct: 232 KAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSI 291

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G    A   F EM   G  PN   + +LI   G+ G    A     +M  +G 
Sbjct: 292 ISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGC 351

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    F  + DG   C + ++ + ++L E
Sbjct: 352 LPDVVTFTSLIDGY--CREGEVNQGLKLWE 379



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ FGK G + +A+ ++ K     C   V+ + SL+   C     +    L   M
Sbjct: 322 TFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEM 381

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TYA+L+NA C   ++REA+ FL+ +      P     + ++ G   AG +
Sbjct: 382 KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKV 441

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +V +M ++    D  TF  LI   C  G +   +  +Y + ++    D  T   L
Sbjct: 442 DEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINCVPDEITINSL 501

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           I  + KAGM +EA ++    ++  +    SL +P+ +   R
Sbjct: 502 ISCLLKAGMPNEASQIKQAALQKLNLGLSSLGSPLTRKSSR 542



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 1/225 (0%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+   C  G    A+     M   G  P     +LLV      G L+SAK  +N++
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G  +    +N+L+  + K   V+  V ++    +     DV ++ ILI  + + G I
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE-MKIKGHPPNRPVYTM 267
           D+AF    N+   G  P    Y  +I G  R  +         E M IKG  P+   YT 
Sbjct: 231 DKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTS 290

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +I+   + G    A+    EM   G+ P    F+++ DG    G 
Sbjct: 291 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGN 335



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 57/136 (41%)

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           +S   L +    +TY +L+  + K G+ D A  +   +  DG  P  S+   ++    R 
Sbjct: 98  FSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARM 157

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A  F +E+   G   +  VY  L+ M  +     EA     E  E    P    F
Sbjct: 158 GKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSF 217

Query: 301 DLVTDGLKNCGKHDLA 316
           +++  GL   G+ D A
Sbjct: 218 NILIRGLCRIGEIDKA 233


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/332 (28%), Positives = 154/332 (46%), Gaps = 12/332 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E +     ++     +L+I      G VD  +E+  K   F C+  ++ YN++L  L
Sbjct: 172 RVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGL 231

Query: 63  CEVKLFHGAYALIRRMIR----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           C  K +     L+  M++           G  PD R YA +++  C  G    A E L  
Sbjct: 232 CAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSR 291

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M   G  P V   + +++G+ +A   E A++++ +M ++   LD  TFN L++  C++G 
Sbjct: 292 MPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGL 351

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+  +E+   + + G   DV TY  +I    K G+IDEA  LL N+   G KP    Y  
Sbjct: 352 VDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTI 411

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG+    ++ DA    S M  +G  PN   +  +I    + G   +A   L +M   G
Sbjct: 412 VLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNG 471

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             P    +  V DGL   GK +  E +ELL V
Sbjct: 472 CNPDLISYSTVIDGLGKAGKTE--EALELLNV 501



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 137/277 (49%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N  +   T +++++ F ++GLVD  +E+  +     C   V+ Y +++   C+  L   A
Sbjct: 331 NCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEA 390

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L++ M   G  P+  +Y I++   CS+ +  +A+E +  M  +G  P     + ++  
Sbjct: 391 VMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINF 450

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G +E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +
Sbjct: 451 LCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPN 510

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  +  A+++ G ID+  ++  N+ +   +    LY  +I  + +R + D A  F +
Sbjct: 511 VITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLA 570

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            M   G  PN   YT LI      G   EA + L E+
Sbjct: 571 YMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 4/290 (1%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A E+  +    NC    + +N L+   C+  L      L+ +M+  G +PD  TY  +
Sbjct: 318 EKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTV 377

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C  G + EA   L+ M   G  P      ++++GL +      A++++++MI+QG 
Sbjct: 378 INGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGC 437

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           + +  TFN++I  +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  +EA  
Sbjct: 438 LPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALE 497

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL+ ++  G  P    Y+ +   + R G+ D     F  ++      +  +Y  +I+   
Sbjct: 498 LLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLC 557

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKI 319
           +      A ++L  M   G  P    +  +  GL +    C   DL  ++
Sbjct: 558 KRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSEL 607



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 140/350 (40%), Gaps = 55/350 (15%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+ V ++ T+ +C     +Y+ ++ + C    +  A  ++  +  KG
Sbjct: 122 VVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVLEALHAKG 181

Query: 83  FVPDKRTYAILVNAWCSSG----------------------------------------- 101
              D     +++NA C  G                                         
Sbjct: 182 STLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVE 241

Query: 102 ----KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
               +M +  E L +M+  G  P +R    ++ G+   G+ E A +++++M   G   ++
Sbjct: 242 ELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNV 301

Query: 158 ETFNSLIETICKSGE----VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +N++++ IC +       E   EMY   C L    D  T+ IL+    + G++D    
Sbjct: 302 VCYNTVLKGICSADRWEKAEELLTEMYQKNCPL----DDVTFNILVDFFCQNGLVDRVIE 357

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  ++E G  P    Y  +I G  + G  D+A      M   G  PN   YT+++    
Sbjct: 358 LLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLKGLC 417

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              R+V+A   +  M + G  P    F+ + + L  C K  + + IELL+
Sbjct: 418 STERWVDAEELMSRMIQQGCLPNPVTFNTIINFL--CKKGLVEQAIELLK 465



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 20/315 (6%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           LS +I      G   +AV   +   A      V+ YN+++   C V     A    RR+ 
Sbjct: 55  LSALIRSLCVAGRTADAVRALD---AAGNAAGVVDYNAMVAGYCRVGQVEAA----RRLA 107

Query: 80  RKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               VP +  TY  +V   C  G++ +A   L EM+ +   P      ++++    +G  
Sbjct: 108 AAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGY 167

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA +++  +  +G  LD    N +I  IC  G V+  +EM   +   G  AD+ +Y  +
Sbjct: 168 SSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAV 227

Query: 199 IPAVSKAG-------MIDEAFRL---LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           +  +  A        ++DE  ++   L  + + G  P   +YA II G+ + G  + A  
Sbjct: 228 LKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANE 287

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             S M   G  PN   Y  ++       R+ +A   L EM +         F+++ D   
Sbjct: 288 ILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFC 347

Query: 309 NCGKHDLAEKIELLE 323
             G  D    IELLE
Sbjct: 348 QNGLVD--RVIELLE 360



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  ++P   T S +     + G +D  +++F+       +   +LYN+++ +LC+ +   
Sbjct: 504 NKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETD 563

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            A   +  M+  G +P++ TY  L+    S G + EAQ+ L E+  +
Sbjct: 564 LAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLLSELCSR 610


>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 451

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 135/269 (50%), Gaps = 1/269 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I  M+   +  SP+T +++ E +   G  D AV++F       C Q +  +N++L 
Sbjct: 108 VWSLIHRMRSLRIGPSPKTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILD 167

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY L R  +R  F  D  TY ++VN WC   +  +A E L+EM D+G NP
Sbjct: 168 VLCKSKRVEKAYELFR-ALRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINP 226

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + ++QG   AG +  A +   +M K+   +D+ T+ +++     +GE++    ++
Sbjct: 227 NLTTYNTMLQGFFRAGQIRQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVF 286

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+   V+TY   I  + K   ++ A  +   +V  G++P  + Y  +I+G+F  
Sbjct: 287 DEMIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHA 346

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           G+F         M+ +G  PN   Y M+I
Sbjct: 347 GKFSRGEELMQRMENEGCEPNFQTYNMMI 375


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 136/260 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G VD A E+ ++ +    Q  V  YN+L+  LC+V     A  L+  M
Sbjct: 464 TYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM 523

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              GF PD  TY  +++A+C  G+M +A E L+ M DKG  P +   ++L+ G   +G L
Sbjct: 524 DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGML 583

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+ +G + +  TFNSL++  C    +   +E+Y  +   G+  D +TY IL
Sbjct: 584 EDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNIL 643

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   +VE G     + Y  +IKG ++R +F++A   F EM+  G 
Sbjct: 644 IKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGF 703

Query: 259 PPNRPVYTMLITMCGRGGRF 278
              + +Y + + +    G +
Sbjct: 704 IAEKEIYDIFVDVNYEEGNW 723



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 126/265 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNS++  LC+      A  ++R M  +   PD   Y  L++ +  SG +    +   EM 
Sbjct: 325 YNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMK 384

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            K   P       ++ GL  AG +  A+++ ++M+ +G   D  T+ +LI+  CK+GE++
Sbjct: 385 RKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMK 444

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + + GL  +V TY  L+  + K G +D A  LLH + E G +P    Y  +I
Sbjct: 445 EAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALI 504

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  + A     EM + G  P+   YT ++    + G   +A   L  M + GL 
Sbjct: 505 NGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQ 564

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    F+++ +G    G  +  E++
Sbjct: 565 PTIVTFNVLMNGFCMSGMLEDGERL 589



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 2/275 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y+ ++   C+V+       L+  + RKG  P++ TY  +++  C +G++ EA++ L+
Sbjct: 287 VVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLR 346

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M ++   P       L+ G   +G +    ++ ++M ++  V D  T+ S+I  +C++G
Sbjct: 347 VMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAG 406

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V    +++  +   GL  D  TY  LI    KAG + EAF L + +VE G  P    Y 
Sbjct: 407 KVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYT 466

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ + G+ D A     EM  KG  PN   Y  LI    + G   +A   + EM   
Sbjct: 467 ALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLA 526

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
           G  P +  +  + D    C   ++A+  ELL + L
Sbjct: 527 GFFPDTITYTTIMDAY--CKMGEMAKAHELLRIML 559



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 145/316 (45%), Gaps = 4/316 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + +MK   +       + +I  FGK G V    ++F++          + Y S++  L
Sbjct: 343 QVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGL 402

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L   M+ KG  PD+ TY  L++ +C +G+M+EA     +M +KG  P V
Sbjct: 403 CQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNV 462

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                LV GL   G ++ A +++++M ++G   ++ T+N+LI  +CK G +E  V++   
Sbjct: 463 VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEE 522

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   D  TY  ++ A  K G + +A  LL  +++ G +P    +  ++ G    G 
Sbjct: 523 MDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGM 582

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            +D       M  KG  PN   +  L+   C R         Y   M   G+ P +  ++
Sbjct: 583 LEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIY-KGMHAQGVVPDTNTYN 641

Query: 302 LVTDGLKNCGKHDLAE 317
           ++  G  +C   ++ E
Sbjct: 642 ILIKG--HCKARNMKE 655



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +  A  VF + +        + YN +L  LC++     A++L+ +M  +G VPD  +Y++
Sbjct: 233 IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSV 292

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           +V+ +C   ++ +  + ++E+  KG  P     + ++  L   G +  A+Q++  M  Q 
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D   + +LI    KSG V    +++  + +  +  D  TY  +I  + +AG + EA 
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEAR 412

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L   ++  G KP    Y  +I G  + G+  +AF   ++M  KG  PN   YT L+   
Sbjct: 413 KLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL 472

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G    A   L EM+E GL P    ++ + +GL  C   ++ + ++L+E
Sbjct: 473 CKCGEVDIANELLHEMSEKGLQPNVCTYNALINGL--CKVGNIEQAVKLME 521



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + MK   +     T + +I    + G V  A ++F++  +   +   + Y +L+  
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A++L  +M+ KG  P+  TY  LV+  C  G++  A E L EMS+KG  P 
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPN 496

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+ GL   G +E A +++ +M   GF  D  T+ ++++  CK GE+    E+  
Sbjct: 497 VCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLR 556

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL   + T+ +L+     +GM+++  RL+  +++ G  P  + +  ++K    R 
Sbjct: 557 IMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRN 616

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                   +  M  +G  P+   Y +LI    +     EA     EM E G +  +  ++
Sbjct: 617 NMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYN 676

Query: 302 LVTDGLKNCGKHDLAEKI 319
            +  G     K + A K+
Sbjct: 677 SLIKGFYKRKKFEEARKL 694



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 3/221 (1%)

Query: 3   KTIELMKPYNLS-VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + ++LM+  +L+   P T++   I++ + K G +  A E+         Q  ++ +N L+
Sbjct: 515 QAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLM 574

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C   +      LI+ M+ KG +P+  T+  L+  +C    MR   E  + M  +G  
Sbjct: 575 NGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVV 634

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++L++G   A  ++ A  +  +M+++GF L   ++NSLI+   K  + E   ++
Sbjct: 635 PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKL 694

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +  +   G  A+   Y I +    + G  +    L    +E
Sbjct: 695 FEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIE 735



 Score = 41.2 bits (95), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 45/100 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C+ +    A+ L + M+ KGF     +Y  L+  +    K  EA++  +EM 
Sbjct: 640 YNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMR 699

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
             GF       D+ V      G  E+  ++ ++ I++  V
Sbjct: 700 THGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLV 739


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  140 bits (353), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 145/314 (46%), Gaps = 3/314 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    L+ +  T + II+ + K G+V  A+EVF       C      Y SL++ L
Sbjct: 444 ETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGL 503

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + K  H A ALI +M   G  P   TY  L+   C   +   A    + M   G  P  
Sbjct: 504 IQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 563

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           +  ++L   L  +G  E A      ++++G VL   T+ SL++   K+G  +F   +   
Sbjct: 564 QAYNVLTDALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 620

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G  AD+ TY +L+ A+ K   ++EA  +L  +   G K     Y  II  M + G+
Sbjct: 621 MVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F+EM   GH P+   YT+ I+   + GR  EA + + EM   G+TP    +++
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNI 740

Query: 303 VTDGLKNCGKHDLA 316
             +G  + G  D A
Sbjct: 741 FINGCGHMGYIDRA 754



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 138/301 (45%), Gaps = 4/301 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+ + K G + +A+ +        C      YNSL++ LC  KL   A  L+
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKL-DEAEELL 376

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
              I +GF P   T+  L+N +C + ++ +A      M        ++   +L+  L+  
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L+ AK+ +N+M   G   ++ T+ S+I+  CK G V   +E++  +   G   +  TY
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + +   + +A  L+  + EDG  P    Y  +I+G  ++ +FD+AF  F  M+ 
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 556

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y +L     + GR  EA ++LV     G+      +  + DG    G  D 
Sbjct: 557 NGLTPDEQAYNVLTDALCKSGRAEEAYSFLV---RKGVVLTKVTYTSLVDGFSKAGNTDF 613

Query: 316 A 316
           A
Sbjct: 614 A 614



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 147/373 (39%), Gaps = 62/373 (16%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL----YNS 57
           ++  E+M+   L+   Q  +++ +   K G  + A        +F  ++ V+L    Y S
Sbjct: 548 FRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY-------SFLVRKGVVLTKVTYTS 600

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+    +      A  LI +M+ +G   D  TY++L+ A C   K+ EA   L +M+  G
Sbjct: 601 LVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSG 660

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
               +    +++  ++  G  + AK + N+MI  G      T+   I + CK G +E   
Sbjct: 661 VKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAE 720

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF------------------------- 212
            +   + + G+  DV TY I I      G ID AF                         
Sbjct: 721 HLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHF 780

Query: 213 --------------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                                     +LL  +++ G  P    Y+ II G  +  + ++A
Sbjct: 781 LKMSLINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEA 840

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                 M  K   PN  +YTMLI  C     F +A +++ +M E G  P    +  +  G
Sbjct: 841 CVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVG 900

Query: 307 LKNCGKHDLAEKI 319
           L + G +D A+ +
Sbjct: 901 LCDEGDYDRAKSL 913



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 123/312 (39%), Gaps = 38/312 (12%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C++    Y  L+  LCE +    A  L+  M+  G   +  TY +L+   C  G++ +A+
Sbjct: 245 CRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDAR 304

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L EM  +G  P V   + ++ G   +G ++ A  +   M + G   D  T+NSLI  +
Sbjct: 305 GLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGL 364

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE------- 220
           C  G+++   E+       G    V T+  LI    KA  ID+A R+  N++        
Sbjct: 365 C-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDL 423

Query: 221 ----------------------------DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
                                       +G  P    Y  II G  + G    A   F  
Sbjct: 424 QAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKL 483

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ +G  PN   Y  LI    +  +  +A   + +M E G+TP    +  +  G   C K
Sbjct: 484 MEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQG--QCKK 541

Query: 313 HDLAEKIELLEV 324
           H+      L E+
Sbjct: 542 HEFDNAFRLFEM 553



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 113/251 (45%), Gaps = 1/251 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL   C       A  L+  M   G   ++ +Y IL+   C +  +REA   +  M  
Sbjct: 218 NALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVH 277

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G +  +    LL++GL   G +  A+ ++++M  +G V  + T+N++I+  CKSG ++ 
Sbjct: 278 DGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 337

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + +   + + G   D  TY  LI  +   G +DEA  LL+  +  G  P    +  +I 
Sbjct: 338 ALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLIN 396

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  +  + DDA    S M       +   Y +LI +  +  R  EA   L EM   GL P
Sbjct: 397 GYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP 456

Query: 296 ISRCFDLVTDG 306
               +  + DG
Sbjct: 457 NVVTYTSIIDG 467



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 3/267 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  L +L    +      L   ++++G +PD  TY  ++ A+C  G +  A  +   + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G        + L+ G      L  A  ++  M   G   +  ++  LI+ +C++  V 
Sbjct: 207 ESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVR 266

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + + + +   G   ++ TY +LI  + K G I +A  LL  +   G  P    Y  +I
Sbjct: 267 EALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMI 326

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGL 293
            G  + G+  DA    + M+  G  P+   Y  LI  +C  GG+  EA   L      G 
Sbjct: 327 DGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLC--GGKLDEAEELLNGAIARGF 384

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIE 320
           TP    F  + +G     + D A +++
Sbjct: 385 TPTVITFTNLINGYCKAERIDDALRVK 411



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 91/219 (41%), Gaps = 18/219 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++ I   G  G +D A     +    +C+     Y  LL    ++ L +  Y
Sbjct: 731 VTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHY 790

Query: 73  A----------------LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
                            L+ RM++ G  P   TY+ ++  +C + ++ EA   L  M  K
Sbjct: 791 VDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGK 850

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
             +P      +L++   +      A   V  MI+ GF   LE+++ LI  +C  G+ +  
Sbjct: 851 DISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRA 910

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             ++  +  +    +   +KIL   + KAG +D   +LL
Sbjct: 911 KSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLL 949



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 26/205 (12%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL   + L          +E   KHGL                   V+ Y+S++ 
Sbjct: 796 MWNWIELNMVWQL----------LERMMKHGL----------------NPTVVTYSSIIA 829

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+  M+ K   P++  Y +L+   C      +A  F+ +M + GF P
Sbjct: 830 GFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQP 889

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+ GL + G  + AK +   ++   +  +   +  L + + K+G V+FC ++ 
Sbjct: 890 QLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLL 949

Query: 181 YSVCKLGLCADVSTYKILIPAVSKA 205
            ++       D  +Y +L  ++ +A
Sbjct: 950 AAMDNRHCRIDSESYSMLTDSIREA 974


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 157/349 (44%), Gaps = 40/349 (11%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           +L V P  +  + +I+   + G    AV +         Q  VL YNS++  LC+ +   
Sbjct: 474 SLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKME 533

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF----------- 118
            A   +  MI +G  P+  TY  L++ +C SG+M+ A  + +EM   G            
Sbjct: 534 EAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALI 593

Query: 119 ------------------------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                                   +P VR    L+ GLL  G L+ A +++++ +++G V
Sbjct: 594 DGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLV 653

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+NS+I   CK G +    +++  +C+ G+  ++ TY  LI  + KAG I+ A  L
Sbjct: 654 PDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERAREL 713

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +   G       YA II G  + G    AF  F EM +KG PP+  VY+ LI  C +
Sbjct: 714 FDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRK 773

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G   +A +  +E  + G    S   + + DG    GK  + E  +LLE
Sbjct: 774 EGNTEKALSLFLESVQKGFASTSS-LNALMDGFCKSGK--VIEANQLLE 819



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 132/282 (46%), Gaps = 2/282 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ YN ++  LC       A+ L + M +KG V D  TY+IL++ +    +  EA+
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAK 326

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L+EM  KG  P       L+ G +  G    A ++  +M+ +G  L+L T+N+L++ +
Sbjct: 327 LMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGV 386

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G++E    +   +  +G+  D  TY  +I    K         LL  + +    P  
Sbjct: 387 CKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTA 446

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
                II G+ R G  +DA   F  M   G  PN  +YT LI    + GRF EA   L  
Sbjct: 447 YTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKV 506

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK--IELLEVSLR 327
           M + G+ P   C++ V  GL    K + A+   +E++E  L+
Sbjct: 507 MDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLK 548



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 3/323 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  NL  +  T  +II    +HG +++A  VF    +   +   ++Y +L+    +   
Sbjct: 437 MKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR 496

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +++ M +KG  PD   Y  ++   C S KM EA+++L EM ++G  P V     
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGA 556

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   +G ++ A +   +M+  G   +     +LI+  CK G       ++  +    
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV TY  LI  + + G +  A  LL   +E G  P    Y  II G  ++G    AF
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M  KG  PN   Y  LI    + G    A      +   GL   +  +  + DG 
Sbjct: 677 QLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGY 736

Query: 308 KNCGKHDLAEKIELL-EVSLRSV 329
             C   +L++   L  E++L+ V
Sbjct: 737 --CKSGNLSKAFRLFDEMTLKGV 757



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 1/235 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A ++ R M+ +   PD RTY+ L++    +GK++ A E L E  +KG  P V   + ++ 
Sbjct: 605 ATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIIS 664

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G +  A Q+   M ++G   ++ T+N+LI  +CK+GE+E   E++  +   GL  
Sbjct: 665 GFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAH 724

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  +I    K+G + +AFRL   +   G  P   +Y+ +I G  + G  + A   F
Sbjct: 725 NAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF 784

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            E   KG      +  ++   C + G+ +EA   L +M +  + P    + ++ D
Sbjct: 785 LESVQKGFASTSSLNALMDGFC-KSGKVIEANQLLEDMVDKHVKPDHVTYTILID 838



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 133/302 (44%), Gaps = 3/302 (0%)

Query: 14  SVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P  +T S +I    ++G +  A+E+ ++         V  YNS++   C+      A
Sbjct: 616 SVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKA 675

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M +KG  P+  TY  L+N  C +G++  A+E    +  KG          ++ G
Sbjct: 676 FQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDG 735

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              +G L  A ++ ++M  +G   D   +++LI+   K G  E  + ++    + G  A 
Sbjct: 736 YCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-AS 794

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            S+   L+    K+G + EA +LL ++V+   KP    Y  +I    + G   +A  FF 
Sbjct: 795 TSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFV 854

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +M+ +   PN   YT L++     GR  E      EM    + P    + ++ D     G
Sbjct: 855 DMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEG 914

Query: 312 KH 313
            H
Sbjct: 915 DH 916



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 129/302 (42%), Gaps = 2/302 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+ F + G    A  V  +  A   +  +  YN+L+  +C+      A AL+  MI 
Sbjct: 345 TALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIM 404

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD +TY  ++  +         ++ L EM      P      +++ GL   G +E 
Sbjct: 405 VGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIED 464

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++   M+  G   +   + +LI+   + G  +  V +   + K G+  DV  Y  +I 
Sbjct: 465 ASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVII 524

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K+  ++EA   L  ++E G KP    Y  +I G  + G+   A  +F EM   G  P
Sbjct: 525 GLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAP 584

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           N  V T LI    + G   EA +    M    + P  R +  +  GL   GK  L   +E
Sbjct: 585 NDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGK--LQGAME 642

Query: 321 LL 322
           LL
Sbjct: 643 LL 644



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 132/305 (43%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L+I+ + K GL D AV  F           +L  N LL  L +       +     M+  
Sbjct: 171 LLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEA 230

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
             + D  TY  L+NA   +G  +E +  L EM +KG +P +   ++++ GL  AG ++ A
Sbjct: 231 NVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEA 290

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++   M K+G V D+ T++ LI+   K         M   +   GL      Y  LI  
Sbjct: 291 FELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDG 350

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G   EAFR+   ++  G K     Y  ++KG+ + G  + A    +EM + G  P+
Sbjct: 351 FMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPD 410

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y  +I    +        + L EM +  L P +    ++ +GL   G  + A ++  
Sbjct: 411 TQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFE 470

Query: 322 LEVSL 326
           + VSL
Sbjct: 471 IMVSL 475



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 4/304 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT + +IE + K        ++ ++    N          ++  LC       A  +   
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEI 471

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G  P+   Y  L+      G+ +EA   L+ M  KG  P V   + ++ GL  +  
Sbjct: 472 MVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRK 531

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E AK  + +MI++G   ++ T+ +LI   CKSGE++     +  +   G+  +      
Sbjct: 532 MEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTA 591

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G   EA  +   ++     P    Y+ +I G+ R G+   A    SE   KG
Sbjct: 592 LIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKG 651

Query: 258 HPPNRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             P+   Y  +I+  C +GG  +  A  L E M + G++P    ++ + +GL   G+ + 
Sbjct: 652 LVPDVFTYNSIISGFCKQGG--IGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIER 709

Query: 316 AEKI 319
           A ++
Sbjct: 710 AREL 713



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 5/308 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I    K G ++ A E+F+           + Y +++   C+      A+
Sbjct: 687 ISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAF 746

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M  KG  PD   Y+ L++     G   +A     E   KGF       + L+ G 
Sbjct: 747 RLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF-ASTSSLNALMDGF 805

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +  A Q++  M+ +    D  T+  LI+  CK+G ++   + +  + K  L  + 
Sbjct: 806 CKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNA 865

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+   + AG   E F L   ++    +P    ++ +I    + G          +
Sbjct: 866 LTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDD 925

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT-PISRCFDLVTDGLKNCG 311
           M  KG   ++ V  +LI    R     E    L ++ E GL   ++ C  LV       G
Sbjct: 926 MLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVR-CFHKAG 984

Query: 312 KHDLAEKI 319
           K D A ++
Sbjct: 985 KMDGAARV 992



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 86/195 (44%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +LL+ G    G  + A        + GFV+ L   N L+  + K+ ++E     Y  + +
Sbjct: 170 ELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLE 229

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV TY  LI A  +AG   E  RLL  + E G  P    Y  +I G+ R G+ D+
Sbjct: 230 ANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDE 289

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF     M  KG   +   Y++LI   G+  R  EA   L EM   GL P    +  + D
Sbjct: 290 AFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALID 349

Query: 306 GLKNCGKHDLAEKIE 320
           G    G    A +++
Sbjct: 350 GFMRQGDSGEAFRVK 364



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 123/285 (43%), Gaps = 1/285 (0%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            L+ +  T + II+ + K G +  A  +F++ T         +Y++L+    +      A 
Sbjct: 722  LAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKAL 781

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +L    ++KGF       A L++ +C SGK+ EA + L++M DK   P      +L+   
Sbjct: 782  SLFLESVQKGFASTSSLNA-LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYH 840

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G+L+ A+Q    M K+  + +  T+ +L+     +G       ++  +    +  D 
Sbjct: 841  CKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDG 900

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             T+ ++I A  K G   +  +L+ ++++ G     ++   +I  + R+    +      +
Sbjct: 901  VTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEK 960

Query: 253  MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++ +G   +    + L+    + G+   AA  L  M      P S
Sbjct: 961  IEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDS 1005



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T +++I+   K G +  A + F      N     L Y +LL            +AL   M
Sbjct: 832  TYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEM 891

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            I K   PD  T++++++A    G   +  + + +M  KG N       +L+  L    ++
Sbjct: 892  IAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHV 951

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ K+ +QG  L L T ++L+    K+G+++    +  S+ +     D +    L
Sbjct: 952  SEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDL 1011

Query: 199  I 199
            I
Sbjct: 1012 I 1012



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 5/206 (2%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF+  ++   +L   L N+     A  +VN+MI        E  +SLI++ CK    EF 
Sbjct: 96  GFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGGYSEILDSLIKS-CK----EFD 150

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +                 +++LI    K G+ DEA         +G          ++  
Sbjct: 151 LNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSD 210

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           + +  + +  + F++ M       +   YT LI    R G   E    L EM E G +P 
Sbjct: 211 LLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPS 270

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELL 322
              +++V  GL   G+ D A +++ L
Sbjct: 271 LVTYNVVIGGLCRAGEVDEAFELKKL 296


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 166/361 (45%), Gaps = 44/361 (12%)

Query: 6   ELMKPY---NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           ELM+     +L VSP T+  S +I+   K G  D A    +   A      V+ YN+L+ 
Sbjct: 209 ELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVN 266

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--- 117
            LC+      A+A+I  M+ KG  PD  TY++LV+A+C + ++ EA E L  M+ +G   
Sbjct: 267 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 326

Query: 118 ----FNPPVRGR----------------------------DLLVQGLLNAGYLESAKQMV 145
               FN  + G                             ++L+ G   AG  E A  + 
Sbjct: 327 NVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALF 386

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            +M+ +    D+ TF +LI+ +CK+G+VE   ++   +  LG+  +V TY +L+  + K+
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKS 446

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G I+E    L  +V  G  P    Y  ++  + R  + DDA    S++K  G  P+   Y
Sbjct: 447 GRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            +L+    + G+  +A   L EM   G  P S  F     GL   G  +LA  +ELL V 
Sbjct: 507 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSG--NLAGTMELLRVV 564

Query: 326 L 326
           L
Sbjct: 565 L 565



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 135/291 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M    ++    T S++++ F K   VD A+E+ +   +  C   V+ +NS++  LC+
Sbjct: 281 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 340

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ +  ++  +  VPDK T+ IL+   C +G   +A    +EM  K   P V  
Sbjct: 341 SDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMT 400

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL  AG +E+A+ +++ M   G   ++ T+N L+  +CKSG +E   E    + 
Sbjct: 401 FGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMV 460

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   +  TY  L+ A+ +A   D+A +L+  L   G  P    Y  ++ G+++ G+ +
Sbjct: 461 SSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTE 520

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            A     EM  KGH P+   +        R G        L  +   G+ P
Sbjct: 521 QAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGMLP 571



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 41/340 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K   +   +E+F +         V+ YN+L+ +LC+      A  L   M
Sbjct: 83  TYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGM 142

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---------FNPPVRG----- 124
             +G VP+  TY++L+N  C  G++ EA+E +QEM+ K          +N  + G     
Sbjct: 143 SSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQS 202

Query: 125 ------------RD-------------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
                       RD              L+ GL   G  + A    + MI  G+V ++ T
Sbjct: 203 MTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVT 260

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N+L+  +CK+ ++E    M  S+   G+  DV TY +L+ A  KA  +DEA  LLH + 
Sbjct: 261 YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA 320

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
             G  P    +  II G+ +  +  +AF    ++  +   P++  + +LI    + G F 
Sbjct: 321 SRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFE 380

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +A+    EM    + P    F  + DGL   G+ + A  I
Sbjct: 381 QASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDI 420



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 144/313 (46%), Gaps = 7/313 (2%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAY 72
           S S    +++++   + G    A+E+F    A +     ++ YN+++  LC+        
Sbjct: 42  SRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGM 101

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   ++++G  PD  TY  L+++ C +G + EA+     MS +G  P V    +L+ GL
Sbjct: 102 ELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGL 161

Query: 133 LNAGYLESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSV--CKLGL 188
              G ++ A++++ +M ++    + ++ T+NS ++ +CK        E+  S+    L +
Sbjct: 162 CKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV 221

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D  T+  LI  + K G  DEA     +++  G+ P    Y  ++ G+ +  + + A  
Sbjct: 222 SPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHA 279

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M  KG  P+   Y++L+    +  R  EA   L  M   G TP    F+ + DGL 
Sbjct: 280 MIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLC 339

Query: 309 NCGKHDLAEKIEL 321
              +   A +I L
Sbjct: 340 KSDRSGEAFQIAL 352



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%), Gaps = 15/277 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIR-RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN +L +LC       A  + R  M R G  P   TY  ++N  C S ++    E  +E+
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G +P V   + L+  L  AG LE A+++   M  +G V ++ T++ LI  +CK G +
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 174 ----EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH---KPF 226
               E   EM    C   +  ++ TY   +  + K  M  EA  L+ +L  DG     P 
Sbjct: 168 DEARELIQEMTRKSCD--VLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPD 224

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              ++ +I G+ + GQ D+A     +M   G+ PN   Y  L+    +  +   A   + 
Sbjct: 225 TVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIE 282

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            M + G+TP    + ++ D    C    + E +ELL 
Sbjct: 283 SMVDKGVTPDVITYSVLVDAF--CKASRVDEALELLH 317



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M   N+     T   +I+   K G V+ A ++ +          V+ YN L+  LC+ 
Sbjct: 387 EEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKS 446

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                    +  M+  G VP+  TY  LV A C + +  +A + + ++   G++P     
Sbjct: 447 GRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTY 506

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++LV GL  +G  E A  ++ +M+ +G   D  TF +    + +SG +   +E+   V  
Sbjct: 507 NILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLA 566

Query: 186 LGLCADVST 194
            G+  D +T
Sbjct: 567 KGMLPDATT 575


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 148/289 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++++ F K G +D A  + N+ +A   +   + +N L+ A C+      A  + R M
Sbjct: 420 SYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 479

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  T+  L++  C   +++ A   L++M  +G        + L+   L  G +
Sbjct: 480 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 539

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++VN+M+ QG +LD  T+NSLI+ +C++GEV+    ++  + + GL     +  IL
Sbjct: 540 KEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNIL 599

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + ++GM++EA      +V  G  P    +  +I G+ R G+ +D    F +++ +G 
Sbjct: 600 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 659

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           PP+   Y  L++   +GG   +A   L E  E G  P  R + ++   L
Sbjct: 660 PPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 140/291 (48%), Gaps = 1/291 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I  F  HG +D+A  V +   T++     V  YNSL++   +  L   A  ++R M  K
Sbjct: 353 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNK 412

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  +Y ILV+ +C  GK+ EA   L EMS  G  P   G + L+        +  A
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  +M ++G   D+ TFNSLI  +C+  E++  + +   +   G+ A+  TY  LI A
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G I EA +L++ +V  G       Y  +IKG+ R G+ D A   F +M   G  P+
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                +LI    R G   EA  +  EM   G TP    F+ + +GL   G+
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 643



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 37/267 (13%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T+    +I  F K   +  AVE+F +     C+  V  +NSL+  LCEV     A 
Sbjct: 449 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 508

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG- 124
            L+R MI +G V +  TY  L+NA+   G+++EA++ + EM  +G       +N  ++G 
Sbjct: 509 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGL 568

Query: 125 -----------------RD----------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                            RD          +L+ GL  +G +E A +   +M+ +G   D+
Sbjct: 569 CRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 628

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFNSLI  +C++G +E  + M+  +   G+  D  TY  L+  + K G + +A  LL  
Sbjct: 629 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDE 688

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +EDG  P    ++ +++ +  +   D
Sbjct: 689 GIEDGFVPNDRTWSILLQSLVPQETLD 715



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 147/320 (45%), Gaps = 7/320 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+   Y+   + ++ ++++E          A  VF    +      +  +  ++ ALC 
Sbjct: 164 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCA 223

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A +++R M + G VP+   Y  L+++     ++ EA + L+EM   G  P    
Sbjct: 224 VNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET 283

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL     +  A +MVN+M+ +GF  D  T+  L+  +CK G V+   +++Y + 
Sbjct: 284 FNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP 343

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQF 243
           K         +  LI      G +D+A  +L ++V   G  P    Y  +I G +++G  
Sbjct: 344 K----PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLV 399

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A     +M+ KG  PN   YT+L+    + G+  EA N L EM+  GL P +  F+ +
Sbjct: 400 GLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCL 459

Query: 304 TDGLKNCGKHDLAEKIELLE 323
                 C +H + E +E+  
Sbjct: 460 ISAF--CKEHRIPEAVEIFR 477



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/276 (18%), Positives = 109/276 (39%), Gaps = 40/276 (14%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--------------------- 118
           +KG+      Y +L+    S+G+ +     L +M D+G                      
Sbjct: 98  QKGYRHSFDVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPG 157

Query: 119 ---------------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                           P  +  +++++ L++    + A  +   M+ +     L TF  +
Sbjct: 158 QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVV 217

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           ++ +C   EV+  + +   + K G   +   Y+ LI ++SK   ++EA +LL  +   G 
Sbjct: 218 MKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    +  +I G+ +  + ++A    + M I+G  P+   Y  L+    + GR   A +
Sbjct: 278 VPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKD 337

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               + +    P S  F+ +  G    G+ D A+ +
Sbjct: 338 LFYRIPK----PTSVIFNTLIHGFVTHGRLDDAKAV 369


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  139 bits (351), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 149/305 (48%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+  F   G ++ A  +F +    N     + +  L+  LC+  +   A  +   M
Sbjct: 248 TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM 307

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY+ L++ +C   +M EAQ+    M  KGF P VR  ++L+ G   +  L
Sbjct: 308 TENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRL 367

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK ++++M  +    D  T+++L++  C++G  +   +++  +C  GL  D  TY IL
Sbjct: 368 NEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSIL 427

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +DEAFRLL  + E   +P   +Y  +I+GM   G+ + A   FS + +KG 
Sbjct: 428 LDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGI 487

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT++I+   + G   EA     +M   G  P S  +++   G    G  D +  
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNG--DPSNA 545

Query: 319 IELLE 323
           + L+E
Sbjct: 546 VRLIE 550



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G++  A  VF   T    +     Y++L+   C       A  L   M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGF P  R Y IL+N  C S ++ EA+  L EM D+   P       L+QG   AG  
Sbjct: 343 VGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRP 402

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M   G + D  T++ L++ +CK G ++    +  ++ +  +   +  Y IL
Sbjct: 403 QVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNIL 462

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++ A  L  NL   G +P    Y  +I G+ + G  ++A   F +M + G 
Sbjct: 463 IQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGC 522

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            PN   Y + I    R G    A   + EM   G +  S  F ++ D
Sbjct: 523 LPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 4/320 (1%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L + P   T   ++        + +AV++F++         ++ Y +++  LC+
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+++M  KG  PD   Y  ++++ C   +  EA  F  EM D+G  P V  
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ G  N G L  A  +  +MI +  + +  TF  L++ +CK G +     ++  + 
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D  TY  L+        +DEA +L   +V  G  P   +Y  +I G  +  + +
Sbjct: 309 ENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLN 368

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    SEM  +   P+   Y+ L+    + GR   A     EM   GL P S  + ++ 
Sbjct: 369 EAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428

Query: 305 DGLKNCGKHDLAEKIELLEV 324
           DGL  C    L E   LL+ 
Sbjct: 429 DGL--CKHGHLDEAFRLLKA 446



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 125/284 (44%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A     K      Q   + + +LL  LC       A  L   + + GF P   TY  ++ 
Sbjct: 125 AFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIK 184

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G    A + L++M +KG  P V   + ++  L        A    ++M+ QG   
Sbjct: 185 GLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPP 244

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           ++ T++S++   C  G++     ++  +    +  +  T+ IL+  + K GMI EA R+ 
Sbjct: 245 NVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVF 304

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + E+G +P    Y+ ++ G   + Q D+A   F  M  KG  P+  VY +LI    + 
Sbjct: 305 EMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKS 364

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            R  EA   L EM +  LTP +  +  +  G    G+  +A+K+
Sbjct: 365 RRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 125/269 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E+M    +     T S +++ +     +D A ++F+          V +YN L+   
Sbjct: 302 RVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGH 361

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +  + A  L+  M  +   PD  TY+ L+  +C +G+ + AQ+  +EM   G  P  
Sbjct: 362 CKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDS 421

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ GL   G+L+ A +++  M +      +  +N LI+ +C  G++E   E++ +
Sbjct: 422 ITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSN 481

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+   V TY ++I  + K G+ +EA  +   +V +G  P    Y   I+G  R G 
Sbjct: 482 LFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGD 541

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +A     EM  +G   +   + ML+ +
Sbjct: 542 PSNAVRLIEEMVGRGFSADSSTFQMLLDL 570



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 139/318 (43%), Gaps = 2/318 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T       N+S S  T       +     V +AV  FN+         V+++N LL +L 
Sbjct: 21  TTSTASTTNISPSSITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLV 80

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK--MREAQEFLQEMSDKGFNPP 121
           + K +    +L ++M      P+  T  IL+N  C S +  +  A   L +M   G  P 
Sbjct: 81  KKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPT 140

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ GL +   +  A ++ +++ K GF   L T+ ++I+ +CK G     +++  
Sbjct: 141 HVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLK 200

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G   DV  Y  +I ++ K    +EA      +V+ G  P    Y+ I+ G    G
Sbjct: 201 KMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLG 260

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           Q ++A   F +M  +   PN   +T+L+    + G  +EA      MTE G+ P +  + 
Sbjct: 261 QLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYS 320

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + DG     + D A+K+
Sbjct: 321 ALMDGYCLQSQMDEAQKL 338



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 2/209 (0%)

Query: 7   LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L + Y+  ++P T+  S +++ F + G    A ++F +  ++      + Y+ LL  LC+
Sbjct: 374 LSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCK 433

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L++ M      P    Y IL+   C+ GK+  A+E    +  KG  P V  
Sbjct: 434 HGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVT 493

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +++ GLL  G    A +M  KM+  G + +  T+N  I+   ++G+    V +   + 
Sbjct: 494 YTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMV 553

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             G  AD ST+++L+   S   +I    R
Sbjct: 554 GRGFSADSSTFQMLLDLESNDEIISRFMR 582


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 143/282 (50%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T S++I+ F K G V  A  V       N +  V+ YNSL+   C VK  + A
Sbjct: 263 NINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKA 322

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +L   M ++G  PD  +Y+I++N +C    + EA +  +EM  K   P V   + LV G
Sbjct: 323 KSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDG 382

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G    A ++V++M  +G   ++ T+NS+++ ICK+  V+  + +   + + G+  D
Sbjct: 383 LCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPD 442

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY +LI  + K G +D+A ++  +L+  G+ P    Y  +I G   +G FD+     S
Sbjct: 443 IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +MK  G  PN   Y +LI          +A   L EM   GL
Sbjct: 503 KMKDNGCIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 35/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  LV++A +++ +  +      V+ Y+SL+   C V     A  L  RMI 
Sbjct: 202 STIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMIS 261

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFL------------------------------ 110
               P+  T++IL++ +C  GK+REA+  L                              
Sbjct: 262 DNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNK 321

Query: 111 -----QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
                  M+ +G  P V    +++ G      ++ A ++  +M  +    ++ T+NSL++
Sbjct: 322 AKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVD 381

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CKSG     +E+   +   G  +++ TY  ++ A+ K   +D+A  LL  + E G +P
Sbjct: 382 GLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQP 441

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I G+ + G+ DDA   F ++ +KG+ PN   YT LI      G F E    L
Sbjct: 442 DIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAML 501

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +M + G  P +  ++++   L    ++D AEK+
Sbjct: 502 SKMKDNGCIPNAITYEILIHSLFEKDENDKAEKL 535



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 148/301 (49%), Gaps = 8/301 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G    AV++  +      +  V++Y++++ ++C+ KL + A+ L   M+ K 
Sbjct: 169 LINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKR 228

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L++ +C  GK++ A +    M     NP V    +L+ G    G +  AK
Sbjct: 229 ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAK 288

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+K+   LD+ T+NSL++  C   +V     ++  + + G+  DV +Y I+I   
Sbjct: 289 NVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348

Query: 203 SKAGMIDEAFRLLHNLVEDGH--KPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            K  M+DEA +L     E+ H  + FP++  Y  ++ G+ + G+   A     EM  +G 
Sbjct: 349 CKIKMVDEAMKLF----EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQ 404

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           P N   Y  ++    +     +A   L ++ E G+ P    + ++ +GL   G+ D A+K
Sbjct: 405 PSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQK 464

Query: 319 I 319
           +
Sbjct: 465 V 465



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 119/252 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +  +L +L + K +  A +L ++M   G  PD  T  +L+N +   G ++ +     ++ 
Sbjct: 61  FGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAKIL 120

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG++P      +L++GL   G +  A    +K++ QGF LD  ++ +LI  +C+ GE +
Sbjct: 121 KKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETK 180

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V++   V    +  +V  Y  +I ++ K  ++++AF L   +V     P    Y+ +I
Sbjct: 181 AAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLI 240

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G    G+   A   F+ M      PN   +++LI    + G+  EA N L  M +  + 
Sbjct: 241 SGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVK 300

Query: 295 PISRCFDLVTDG 306
                ++ + DG
Sbjct: 301 LDVVTYNSLMDG 312



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 110/255 (43%), Gaps = 3/255 (1%)

Query: 74  LIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           L  R++ K   +P    +  ++ +   + + + A    Q+M   G  P     +LL+   
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G+++ +  +  K++K+G+  D  TF  LI+ +C  GEV   +  +  V   G   D 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            +Y  LI  + + G    A +LL  +     +P   +Y+ II  M +    +DAF  + E
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCE 223

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   P+   Y+ LI+     G+   A +    M    + P    F ++ DG   C +
Sbjct: 224 MVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGF--CKE 281

Query: 313 HDLAEKIELLEVSLR 327
             + E   +L V ++
Sbjct: 282 GKVREAKNVLAVMMK 296



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++   K+  VD A+ +  K      Q  +  Y  L+  LC+V     A  +   +
Sbjct: 410 TYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDL 469

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG+ P+  TY  L+N +C+ G   E    L +M D G  P     ++L+  L      
Sbjct: 470 LVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDEN 529

Query: 139 ESAKQMVNKMIKQGFV 154
           + A++++ +MI +G +
Sbjct: 530 DKAEKLLREMIARGLL 545


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 4/311 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G ++  +  F +     C   V+ YN+++ A C+++    A+
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAF 258

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M  KG  P+  +Y +++N  C  G+M+E  E L+EMS + + P     + L+ G 
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            N G    A  +  +M+K G   ++ T+ +LI ++CK+G +   +E    +   GL  + 
Sbjct: 319 CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG 378

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI   S+ G + +A++++  +VE+G  P    Y  +I G    G+ +DA     E
Sbjct: 379 RTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  P+   Y+ +I+   R     +A    VEM   G++P    +  +  GL  C +
Sbjct: 439 MIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL--CKQ 496

Query: 313 HDLAEKIELLE 323
             L E  +L +
Sbjct: 497 RRLGEVCDLFQ 507



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 154/320 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K + LM    L+ +  + +++I    + G +    E+  + +        + +N+L+  
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C V  FH A  L   M++ G  P+  TY  L+N+ C +G +  A EFL +M D+G +P 
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            R    L+ G    G+L+ A Q++ +M++ GF   + T+N+LI   C  G +E    +  
Sbjct: 378 GRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQ 437

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G   DV +Y  +I    +   +++AF+L   +V  G  P  + Y+ +I+G+ ++ 
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +    F EM   G PP+   YT LI      G   +A     EM + G +P    ++
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 302 LVTDGLKNCGKHDLAEKIEL 321
           ++ +G     +   A+++ L
Sbjct: 558 VLINGFNKQSRTKEAKRLLL 577



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 17/339 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L  + +T + +I+ F + G +  A ++  +         ++ YN+L+   C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L++ MI +GF+PD  +Y+ +++ +C + ++ +A +   EM  KG +P V  
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QGL     L     +  +M+  G   D  T+ SLI   C  G+++  + ++  + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII---------- 234
           + G   D+ TY +LI   +K     EA RLL  L+ +   P    Y  +I          
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 235 -----KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
                KG   +G  ++A      M  KG+  N  VY ++I    + G   +A N   EM 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             G  P S     +   L + GK    E  +LL+ +L+S
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKE--VELNQLLDYTLKS 702



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +L+ ++C+    + A   + +M  +G  P+ RTY  L++ +   G +++A + ++
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + GF P +   + L+ G    G +E A  ++ +MI++GF+ D+ +++++I   C++ 
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E+E   ++   +   G+  DV+TY  LI  + K   + E   L   ++  G  P    Y 
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I      G  D A     EM  KG  P+   Y +LI    +  R  EA   L+++   
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              P    ++ + D   NC   +    + L++
Sbjct: 583 ESVPNEITYNTLID---NCNNLEFKSALALMK 611



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 145/311 (46%), Gaps = 6/311 (1%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN--KCTAFNCQQCVLLYNSLLFA 61
            + ++  Y L  + Q+L+   EE   + + +   ++F   K + + C+    +++ ++ +
Sbjct: 85  ALHILTRYKLYKTAQSLA---EEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKS 141

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK-MREAQEFLQEMSDKGFNP 120
              V L + A +++      GF+P   +Y  +++A   + + ++ A+   +EM + G +P
Sbjct: 142 CARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSP 201

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   ++L++G   AG LE       +M + G + ++ T+N++I+  CK  ++    ++ 
Sbjct: 202 NVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLL 261

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  ++ +Y ++I  + + G + E   +L  + +  + P    +  +I G    
Sbjct: 262 RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNV 321

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G F  A    +EM   G  PN   YT LI    + G    A  +L +M + GL P  R +
Sbjct: 322 GNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY 381

Query: 301 DLVTDGLKNCG 311
             + DG    G
Sbjct: 382 TTLIDGFSQQG 392


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 163/361 (45%), Gaps = 39/361 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +  M+   +  S +T ++I E F   G  D A++VF       C Q +  +N++L 
Sbjct: 131 VWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILD 190

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY  + +++R  F  D  +Y I+ N WC   +  +A E L+EM ++G  P
Sbjct: 191 ILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTP 250

Query: 121 PVRGRDLLVQGLLNAGYLES-----------------------------------AKQMV 145
            +   ++L++G   AG L+                                    A+++ 
Sbjct: 251 TITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVF 310

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           N+M+ +G +    T+N++I+ +CK   VE  V M+  + K G   +++TY ++I  +  A
Sbjct: 311 NEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHA 370

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D+A   +  +  DG +P    Y   I+     G  +     F +M  +G  PN   Y
Sbjct: 371 GNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMG-QGSLPNLDTY 429

Query: 266 TMLIT---MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +LI+   +  +    V A   L+EM + G  P    F+ V +GL   G    A++I  L
Sbjct: 430 NVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRL 489

Query: 323 E 323
           +
Sbjct: 490 Q 490



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 100 SGKMREAQE---FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +G+MR+ +     +  M  +   P  +   ++ +  + AG  + A ++   M + G   D
Sbjct: 122 AGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQD 181

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L +FN++++ +CKS  VE      + V +    ADV +Y I+           +A  +L 
Sbjct: 182 LHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLK 241

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +VE G  P  + Y  ++KG FR GQ  +A+ FF +MK +    +   YT ++   G  G
Sbjct: 242 EMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVG 301

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               A     EM   G+ P +  ++ +   L  C K  +   + + E
Sbjct: 302 EIKRARKVFNEMVGEGILPSTATYNAMIQVL--CKKDSVENAVLMFE 346



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 37/223 (16%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+    MK   + +   T + ++  FG  G +  A +VFN+            YN+++  
Sbjct: 272 WEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQV 331

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  +   M++KG+VP+  TY +++     +G M +A EF++ M   G  P 
Sbjct: 332 LCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPN 391

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM--------------------------------- 148
           V+  ++ ++   +AG +E    M  KM                                 
Sbjct: 392 VQTYNVAIRYFCDAGDVEKGLSMFEKMGQGSLPNLDTYNVLISAMFVRKKSEDLVVAGKL 451

Query: 149 ----IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
               + +GF+    TFN ++  +  +G   F  E+     K G
Sbjct: 452 LLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKCG 494


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 156/324 (48%), Gaps = 36/324 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK ++ +K   + +S +  S++IE + + G+ + AVE F     F+C+  +  +N +L  
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHF 172

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L   + F  A A+  +M++    PD  TY IL++  C + K ++A     EM+D+G  P 
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++ GL  A  +  A+++ +KM   G   DL T+N L+   CKS           
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKS----------- 281

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                                   G +D+AF LL  L +DGH      Y  +I G+FR  
Sbjct: 282 ------------------------GYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRAR 317

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           ++++A  ++ +M  +   P+  +YT++I    + GR  EA   L EMTE GL P + C++
Sbjct: 318 RYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYN 377

Query: 302 LVTDGLKNCGKHDLAEKIELLEVS 325
            +  G  + G  D AE +  LE+S
Sbjct: 378 ALIKGFCDMGYLDEAESLR-LEIS 400



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 48/333 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F K G +D+A  +    T       V+ Y  L+  L   + +  A+   ++M
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R+   PD   Y I++      G++ EA   L EM+++G  P     + L++G  + GYL
Sbjct: 330 LRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYL 389

Query: 139 ESAKQM----------------------------VNK-------MIKQGFVLDLETFNSL 163
           + A+ +                            +NK       M K G +  + TFNSL
Sbjct: 390 DEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSL 449

Query: 164 IETICKSGEVEFCVEMYYS---VCKLGL----------CADVSTYKILIPAVSKAGMIDE 210
           I  +CK+  +E    ++Y    V K  L            D+++ ++++  + ++GMI +
Sbjct: 450 INGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILK 509

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A++LL  LV+ G  P    Y  +I G  + G  + AF  F EM++KGH P+   Y  LI 
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              R GR  +A     +M + G  P S  +  +
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 128/276 (46%), Gaps = 15/276 (5%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++ P  +  +++I    + G V  A+ +  + T    +   + YN+L+   C++     A
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +L   + +    P+  TY+IL+   C +G + +AQ   +EM   G  P V   + L+ G
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452

Query: 132 LLNAGYLESAKQMVNKM-----------IKQGF--VLDLETFNSLIETICKSGEVEFCVE 178
           L  A  LE A+ +  +M           + QG   V D+ +   ++E +C+SG +    +
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +   G+  D+ TY ILI    K G I+ AF+L   +   GH P    Y  +I G++
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           R G+ +DA   F +M  KG  P    Y  ++T   R
Sbjct: 573 RAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCR 608



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 135/299 (45%), Gaps = 15/299 (5%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A  +F+K  A  C + ++ YN LL   C+      A+ L++ + + G +     Y  L+
Sbjct: 251 DAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLI 310

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           N    + +  EA  + Q+M  +   P V    ++++GL   G +  A  ++ +M ++G  
Sbjct: 311 NGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLR 370

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D   +N+LI+  C  G ++    +   + K     +  TY ILI  + K G+I++A  +
Sbjct: 371 PDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP-------------- 260
              + + G  P    +  +I G+ +  + ++A   F +M+I   P               
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFD 490

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +  M+  +C   G  ++A   L+++ + G+ P  R ++++ +G    G  + A K+
Sbjct: 491 IASLQVMMERLC-ESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 4/279 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL+    T  ++I    K     +A+ +F++ T        ++Y+ +L  LC+ K    A
Sbjct: 193 NLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDA 252

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L  +M   G   D  TY +L+N +C SG + +A   LQ ++  G    V G   L+ G
Sbjct: 253 QRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLING 312

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A   E A     KM+++    D+  +  +I  + + G V   + +   + + GL  D
Sbjct: 313 LFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPD 372

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQFDDAFCF 249
              Y  LI      G +DEA  L   L    H  FP+   Y+ +I GM + G  + A   
Sbjct: 373 TICYNALIKGFCDMGYLDEAESL--RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           F EM+  G  P+   +  LI    +  R  EA     +M
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%)

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LCE  +   AY L+ +++  G +PD RTY IL+N +C  G +  A +  +EM  KG  P 
Sbjct: 501 LCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPD 560

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 L+ GL  AG  E A ++  +M+K+G V +  T+ +++   C+   +   + ++
Sbjct: 561 SVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVW 619


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 157/324 (48%), Gaps = 36/324 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK ++ +K   + +S +  S++IE + + G+ + AVE F+    F+C+  +  +N +L  
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHF 172

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L   + F  A A+  +M++    PD  TY IL++  C + K ++A     EM+D+G  P 
Sbjct: 173 LVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPN 232

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++ GL  A  +  A+++ +KM   G   DL T+N L+   CKS           
Sbjct: 233 QIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKS----------- 281

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                                   G +D+AF LL  L +DGH      Y  +I G+FR  
Sbjct: 282 ------------------------GYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRAR 317

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           ++++A  ++ +M  +   P+  +YT++I    + GR  EA   L EMTE GL P + C++
Sbjct: 318 RYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYN 377

Query: 302 LVTDGLKNCGKHDLAEKIELLEVS 325
            +  G  + G  D AE +  LE+S
Sbjct: 378 ALIKGFCDMGYLDEAESLR-LEIS 400



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 148/333 (44%), Gaps = 48/333 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F K G +D+A  +    T       V+ Y  L+  L   + +  A+   ++M
Sbjct: 270 TYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKM 329

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R+   PD   Y I++      G++ EA   L EM+++G  P     + L++G  + GYL
Sbjct: 330 LRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYL 389

Query: 139 ESAKQM----------------------------VNK-------MIKQGFVLDLETFNSL 163
           + A+ +                            +NK       M K G +  + TFNSL
Sbjct: 390 DEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSL 449

Query: 164 IETICKSGEVEFCVEMYYS---VCKLGL----------CADVSTYKILIPAVSKAGMIDE 210
           I  +CK+  +E    ++Y    V K  L            D+++ ++++  + ++GMI +
Sbjct: 450 INGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILK 509

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A++LL  LV+ G  P    Y  +I G  + G  + AF  F EM++KGH P+   Y  LI 
Sbjct: 510 AYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLID 569

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              R GR  +A     +M + G  P S  +  +
Sbjct: 570 GLYRAGRNEDALEIFEQMVKKGCVPESSTYKTI 602



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 124/267 (46%), Gaps = 13/267 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    + G V  A+ +  + T    +   + YN+L+   C++     A +L   + +
Sbjct: 342 TIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISK 401

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+  TY+IL+   C +G + +AQ   +EM   G  P V   + L+ GL  A  LE 
Sbjct: 402 HDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEE 461

Query: 141 AKQMVNKM-----------IKQGF--VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           A+ +  +M           + QG   V D+ +   ++E +C+SG +    ++   +   G
Sbjct: 462 ARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSG 521

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY ILI    K G I+ AF+L   +   GH P    Y  +I G++R G+ +DA 
Sbjct: 522 VLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDAL 581

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGR 274
             F +M  KG  P    Y  ++T   R
Sbjct: 582 EIFEQMVKKGCVPESSTYKTIMTWSCR 608



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 135/299 (45%), Gaps = 15/299 (5%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A  +F+K  A  C + ++ YN LL   C+      A+ L++ + + G +     Y  L+
Sbjct: 251 DAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLI 310

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           N    + +  EA  + Q+M  +   P V    ++++GL   G +  A  ++ +M ++G  
Sbjct: 311 NGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLR 370

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D   +N+LI+  C  G ++    +   + K     +  TY ILI  + K G+I++A  +
Sbjct: 371 PDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP-------------- 260
              + + G  P    +  +I G+ +  + ++A   F +M+I   P               
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFD 490

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +  M+  +C   G  ++A   L+++ + G+ P  R ++++ +G    G  + A K+
Sbjct: 491 IASLQVMMERLC-ESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKL 548



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 4/279 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL+    T  ++I    K     +A+ +F++ T        ++Y+ +L  LC+ K    A
Sbjct: 193 NLNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDA 252

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L  +M   G   D  TY +L+N +C SG + +A   LQ ++  G    V G   L+ G
Sbjct: 253 QRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLING 312

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A   E A     KM+++    D+  +  +I  + + G V   + +   + + GL  D
Sbjct: 313 LFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPD 372

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQFDDAFCF 249
              Y  LI      G +DEA  L   L    H  FP+   Y+ +I GM + G  + A   
Sbjct: 373 TICYNALIKGFCDMGYLDEAESL--RLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           F EM+  G  P+   +  LI    +  R  EA     +M
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQM 469



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 48/211 (22%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE------------- 64
            T S++I    K+GL++ A  +F +     C   V+ +NSL+  LC+             
Sbjct: 409 HTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLINGLCKANRLEEARLLFYQ 468

Query: 65  ----------VKLFHG-------------------------AYALIRRMIRKGFVPDKRT 89
                     ++L  G                         AY L+ +++  G +PD RT
Sbjct: 469 MEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRT 528

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y IL+N +C  G +  A +  +EM  KG  P       L+ GL  AG  E A ++  +M+
Sbjct: 529 YNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMV 588

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           K+G V +  T+ +++   C+   +   + ++
Sbjct: 589 KKGCVPESSTYKTIMTWSCRENNISLALSVW 619


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 149/302 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G +  A+   +K  A   Q   + Y +L+  LC+V     A  L+RR+
Sbjct: 159 TFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRV 218

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+   Y+ +++  C    + +A +   EM  KG +P V     L+ G    G L
Sbjct: 219 DGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKL 278

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NKMI +    D+ TFN L++  CKSG++ + +++   +   G   ++ TY  +
Sbjct: 279 KDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSI 338

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   +D+A  LL  L + G +P    Y  +I G+   G+ +DA   F ++ +KG+
Sbjct: 339 LDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGY 398

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
                 Y ++     + G F EA+  L +M E G  P ++ ++L+   L   G++D+AEK
Sbjct: 399 DITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGENDMAEK 458

Query: 319 IE 320
           + 
Sbjct: 459 LH 460



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 136/296 (45%), Gaps = 2/296 (0%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F  +  VD+AV +FN     N     + +N +L +L + K +H    L ++M  +G  P+
Sbjct: 62  FHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPN 121

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                IL+N +C  G +  A     ++   G+NP       L++GL   G +  A    +
Sbjct: 122 LVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHD 181

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++  GF  +  ++ +LI+ +CK GE    +++   V    +  +V  Y  +I  + K  
Sbjct: 182 KLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDK 241

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +++AF L   +V  G  P    Y+ +I G F  G+  DA   F++M  +   P+   + 
Sbjct: 242 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +L+ +  + G+   A   + EM + G  P    +  + D L  C  H + + + LL
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL--CKTHRVDKAVALL 355



 Score = 40.0 bits (92), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 45/95 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I+     G +++A  +F           V+ Y  + +  C+  LF  A AL+ +
Sbjct: 368 HTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSK 427

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           M   G +PD +TY ++  +    G+   A++  +E
Sbjct: 428 MEENGCIPDAKTYELIKLSLFKKGENDMAEKLHRE 462


>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
          Length = 616

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 11/278 (3%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L    C VK    A  ++R M+  G  P K TY I++  +  +G++R A +F  
Sbjct: 199 VVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFL 258

Query: 112 EMSDKGFN-----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +M  +G       P V     +V GL  AG LE A+++ ++M K+G    + T+N+LI+ 
Sbjct: 259 QMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQV 318

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           ICK G VE  V ++  +   G   +V TY +LI  +  AG ID   +LL  +   G +P 
Sbjct: 319 ICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPI 378

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLIT---MCGRGGRFVEA 281
              Y  +I+ +F  G+ +     F +M  KG    PN+  Y ++I+   M  R    V A
Sbjct: 379 VQTYNVLIRYLFEEGEMEKGLDLFEKMS-KGEECLPNQDTYNIIISAMFMRKRAEDMVLA 437

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A  + EM + G  P    F+ V +GL   G  +L+ K+
Sbjct: 438 ARMVDEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKL 475



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-----NCQQCVLLYNSLL 59
           + LM    ++ +  T ++I++ F + G + +A + F +         +C+  V+ Y +++
Sbjct: 222 LRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMV 281

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             L        A  +   M ++G  P   TY  L+   C  G + +A      M  KG+ 
Sbjct: 282 HGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYV 341

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L++GL +AG ++   +++ +M   G    ++T+N LI  + + GE+E  +++
Sbjct: 342 PNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDL 401

Query: 180 YYSVCKLGLC-ADVSTYKILIPAV---SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +  + K   C  +  TY I+I A+    +A  +  A R++  +V+ G+ P   ++  ++ 
Sbjct: 402 FEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGYLPRRFMFNRVLN 461

Query: 236 GMFRRG 241
           G+   G
Sbjct: 462 GLMLTG 467



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL  FNSL++ + KS        +  ++ +     DV TY  L     +      A  +L
Sbjct: 164 DLPLFNSLLDALSKSRHAGKAASLVRAL-EQRFTPDVVTYNTLADGWCRVKDTSRALDVL 222

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVYTMLIT 270
             +VE G  P  + Y  I+KG FR GQ   A+ FF +MK +G       P+   YT ++ 
Sbjct: 223 RLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVH 282

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
             G  G+  +A     EM + G  P
Sbjct: 283 GLGVAGQLEKARKVFDEMAKEGCAP 307


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  138 bits (348), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G +D A++  N   ++  Q  V+ +N +L ++C    +  A  L+  M
Sbjct: 53  TYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEM 112

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C  G +  A + L++M   G  P     + L+ G      +
Sbjct: 113 VRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKM 172

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A Q +  M+ +G   D+ T+N+++  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 173 DRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTV 232

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G  D+A  LLH +   G KP    Y+ +I G+ R G+ ++A  FF +++  G 
Sbjct: 233 IDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGV 292

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  ++    +  +   A ++L  M   G  P    + ++ +G+ N G     E 
Sbjct: 293 KPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLA--KEA 350

Query: 319 IELL 322
           +ELL
Sbjct: 351 LELL 354



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 142/298 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE       V  A+++ ++  +  C+  V+ YN L+  +C+      A   +  M
Sbjct: 18  TYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSM 77

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  T+ I++ + CS+G+  +A++ L EM  KG +P V   ++L+  L   G L
Sbjct: 78  PSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLL 137

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ KM   G   +  ++N L+   CK  +++  ++    +   G   D+ TY  +
Sbjct: 138 GRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTM 197

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G +D A  LL+ L   G  P    Y  +I G+ + G+ D A     EM+ KG 
Sbjct: 198 LTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGL 257

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y+ LI    R G+  EA  +  ++   G+ P +  ++ +  GL    + D A
Sbjct: 258 KPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRA 315



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 2/249 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++ R + K   PD  TY IL+ A C+   + +A + L EM  +G  P V   ++LV G+ 
Sbjct: 3   VLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMC 62

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G L+ A + +N M   G   ++ T N ++ ++C +G      ++   + + G    V 
Sbjct: 63  KEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVV 122

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ ILI  + + G++  A  +L  +   G  P    Y P++ G  +  + D A  +   M
Sbjct: 123 TFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIM 182

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P+   Y  ++T   + G+   A   L +++  G +P+   ++ V DGL   GK 
Sbjct: 183 VSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKT 242

Query: 314 DLAEKIELL 322
           D A  +ELL
Sbjct: 243 DQA--VELL 249



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEM 252

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ L+      GK+ EA +F  ++   G  P     + ++ GL  A   
Sbjct: 253 RGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQT 312

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  MI +G      ++  LIE I   G  +  +E+   +C  G+    S  +++
Sbjct: 313 DRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVV 372

Query: 199 I 199
           +
Sbjct: 373 V 373


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 155/320 (48%), Gaps = 2/320 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    K G +D A++  N   +  CQ  V+ +N +L ++
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C    +  A  L+  M+RKGF P   T+ IL+N  C  G +  A + L++M   G  P  
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNS 379

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G      ++ A + + +M+ +G   D+ T+N+++  +CK G+VE  VE+   
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + TY  +I  ++KAG   +A +LL  +     KP    Y+ ++ G+ R G+
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A  FF E +  G  PN   +  ++    +  +   A ++LV M   G  P    + +
Sbjct: 500 VDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTI 559

Query: 303 VTDGLKNCGKHDLAEKIELL 322
           + +GL   G     E +ELL
Sbjct: 560 LIEGLAYEGMA--KEALELL 577



 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 150/301 (49%), Gaps = 3/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G ++NA+ V ++    +    V+ YN++L +LC+      A  ++ RM
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   PD  TY IL+ A C    + +A + L EM D+G  P V   ++LV G+   G L
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G      ++   + + G    V T+ IL
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G++  A  +L  + + G +P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  ++T   + G+  +A   L +++  G +P+   ++ V DGL   GK   A K
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 319 I 319
           +
Sbjct: 471 L 471



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 37/341 (10%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SVSP   T + I+      G +  A+EV ++    +C   V+ Y  L+ A C       
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQ 257

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  M  +G  PD  TY +LVN  C  G++ EA +FL +M   G  P V   +++++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------------- 171
            + + G    A++++  M+++GF   + TFN LI  +C+ G                   
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 172 ----------------EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
                           +++  +E    +   G   D+ TY  ++ A+ K G +++A  +L
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + L   G  P    Y  +I G+ + G+   A     EM+ K   P+   Y+ L+    R 
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G+  EA  +  E   MG+ P +  F+ +  GL    + D A
Sbjct: 498 GKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRA 538



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 122/244 (50%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T +++I    + GL+  A+++  K     CQ   L YN LL   C+ K    A  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            + RM+ +G  PD  TY  ++ A C  GK+ +A E L ++S KG +P +   + ++ GL 
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            AG    A +++++M  +    D  T++SL+  + + G+V+  ++ ++   ++G+  +  
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAV 520

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+  ++  + K    D A   L  ++  G KP  + Y  +I+G+   G   +A    +E+
Sbjct: 521 TFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNEL 580

Query: 254 KIKG 257
             KG
Sbjct: 581 CNKG 584



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 132/267 (49%), Gaps = 5/267 (1%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C +     A  ++  +   G VPD  TY ++++ +C +G++  A   L  MS  
Sbjct: 142 TLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-- 199

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
             +P V   + +++ L ++G L+ A +++++M+++    D+ T+  LIE  C+   V   
Sbjct: 200 -VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQA 258

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++   +   G   DV TY +L+  + K G +DEA + L+++   G +P    +  I++ 
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           M   G++ DA    ++M  KG  P+   + +LI    R G    A + L +M + G  P 
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPN 378

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           S  ++ +  G   C +  +   IE LE
Sbjct: 379 SLSYNPLLHGF--CKEKKMDRAIEYLE 403



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 5/214 (2%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           +P +LS +P     ++  F K   +D A+E   +  +  C   ++ YN++L ALC+    
Sbjct: 376 QPNSLSYNP-----LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV 430

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  ++ ++  KG  P   TY  +++    +GK  +A + L EM  K   P       L
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V GL   G ++ A +  ++  + G   +  TFNS++  +CK+ + +  ++    +   G 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGC 550

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
               ++Y ILI  ++  GM  EA  LL+ L   G
Sbjct: 551 KPTETSYTILIEGLAYEGMAKEALELLNELCNKG 584



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 36/257 (14%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ E  +FL+ M   G  P +     L++G    G    A +++  +   G V D+ T
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVIT 174

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N +I   CK+GE+   + +            Y+     LC                   
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY ILI A  +   + +A +LL  + + G  P    Y  ++ G+ + G+ D+A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 248 CFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            F ++M   G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + 
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCST-GRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C K  L   I++LE
Sbjct: 354 L--CRKGLLGRAIDILE 368



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 5/191 (2%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M+  G V D+    +LI   C+ G+     ++   +   G   D
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY ++I    KAG I+ A  +L  +      P    Y  I++ +   G+   A     
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  +   P+   YT+LI    R     +A   L EM + G TP    ++++ +G+  C 
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGI--CK 286

Query: 312 KHDLAEKIELL 322
           +  L E I+ L
Sbjct: 287 EGRLDEAIKFL 297



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 56/116 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+  +L     T S ++    + G VD A++ F++      +   + +NS++  L
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C+ +    A   +  MI +G  P + +Y IL+      G  +EA E L E+ +KG 
Sbjct: 530 CKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 35/171 (20%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G V++AVE+ N+ ++  C   ++ YN+++  L +      A  L+  M
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE-------------------------- 112
             K   PD  TY+ LV      GK+ EA +F  E                          
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQT 535

Query: 113 ---------MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                    M ++G  P      +L++GL   G  + A +++N++  +G +
Sbjct: 536 DRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586


>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
 gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
          Length = 491

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 139/278 (50%), Gaps = 11/278 (3%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L    C VK    A  ++R M+  G  P K TY I++  +  +G++R A +F  
Sbjct: 199 VVTYNTLADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFL 258

Query: 112 EMSDKGFN-----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +M  +G       P V     +V GL  AG LE A+++ ++M K+G    + T+N+LI+ 
Sbjct: 259 QMKKRGSKDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQV 318

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           ICK G VE  V ++  +   G   +V TY +LI  +  AG ID   +LL  +   G +P 
Sbjct: 319 ICKKGNVEDAVTVFDGMRVKGYVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPI 378

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLIT---MCGRGGRFVEA 281
              Y  +I+ +F  G+ +     F +M  KG    PN+  Y ++I+   M  R    V A
Sbjct: 379 VQTYNVLIRYLFEEGEMEKGLDLFEKMS-KGEECLPNQDTYNIIISAMFMRKRAEDMVLA 437

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A  + EM + G  P    F+ V +GL   G  +L+ K+
Sbjct: 438 ARMVEEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRKL 475



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 118/246 (47%), Gaps = 9/246 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-----NCQQCVLLYNSLL 59
           + LM    ++ +  T ++I++ F + G + +A + F +         +C+  V+ Y +++
Sbjct: 222 LRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMV 281

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             L        A  +   M ++G  P   TY  L+   C  G + +A      M  KG+ 
Sbjct: 282 HGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYV 341

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L++GL +AG ++   +++ +M   G    ++T+N LI  + + GE+E  +++
Sbjct: 342 PNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDL 401

Query: 180 YYSVCKLGLC-ADVSTYKILIPAV---SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +  + K   C  +  TY I+I A+    +A  +  A R++  +V+ G+ P   ++  ++ 
Sbjct: 402 FEKMSKGEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLN 461

Query: 236 GMFRRG 241
           G+   G
Sbjct: 462 GLMLTG 467



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL  FNSL++ + KS        +  ++ +     DV TY  L     +      A  +L
Sbjct: 164 DLPLFNSLLDALSKSRHAGKAASLVRAL-EQRFTPDVVTYNTLADGWCRVKDTSRALDVL 222

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVYTMLIT 270
             +VE G  P  + Y  I+KG FR GQ   A+ FF +MK +G       P+   YT ++ 
Sbjct: 223 RLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDESCKPDVVSYTTMVH 282

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
             G  G+  +A     EM + G  P
Sbjct: 283 GLGVAGQLEKARKVFDEMAKEGCAP 307


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 4/311 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G ++  +  F +     C   V+ YN+++ A C+++    A+
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAF 258

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M  KG  P+  +Y +++N  C  G+M+E  E L+EMS + + P     + L+ G 
Sbjct: 259 KLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGY 318

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            N G    A  +  +M+K G   ++ T+ +LI ++CK+G +   +E    +   GL  + 
Sbjct: 319 CNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNG 378

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI   S+ G + +A++++  +VE+G  P    Y  +I G    G+ +DA     E
Sbjct: 379 RTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQE 438

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  P+   Y+ +I+   R     +A    VEM   G++P    +  +  GL  C +
Sbjct: 439 MIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL--CKQ 496

Query: 313 HDLAEKIELLE 323
             L E  +L +
Sbjct: 497 RRLGEVCDLFQ 507



 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 154/320 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K + LM    L+ +  + +++I    + G +    E+  + +        + +N+L+  
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLING 317

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C V  FH A  L   M++ G  P+  TY  L+N+ C +G +  A EFL +M D+G +P 
Sbjct: 318 YCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPN 377

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            R    L+ G    G+L+ A Q++ +M++ GF   + T+N+LI   C  G +E    +  
Sbjct: 378 GRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQ 437

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G   DV +Y  +I    +   +++AF+L   +V  G  P  + Y+ +I+G+ ++ 
Sbjct: 438 EMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQR 497

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +    F EM   G PP+   YT LI      G   +A     EM + G +P    ++
Sbjct: 498 RLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYN 557

Query: 302 LVTDGLKNCGKHDLAEKIEL 321
           ++ +G     +   A+++ L
Sbjct: 558 VLINGFNKQSRTKEAKRLLL 577



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 150/347 (43%), Gaps = 38/347 (10%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC----EVK 66
           Y    S     L+++   +  L++ A+ + N   ++     VL YN++L A+      VK
Sbjct: 126 YQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVK 185

Query: 67  LFHGAYA----------------LIR----------------RMIRKGFVPDKRTYAILV 94
           +  G +                 LIR                 M R G +P+  TY  ++
Sbjct: 186 IAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTII 245

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +A+C   K+ EA + L+ M+ KG NP +   ++++ GL   G ++   +++ +M K+ +V
Sbjct: 246 DAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYV 305

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D  TFN+LI   C  G     + ++  + K GL  +V TY  LI ++ KAG ++ A   
Sbjct: 306 PDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEF 365

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  + + G  P    Y  +I G  ++G    A+    EM   G  P    Y  LI     
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            GR  +A+  L EM E G  P    +  +  G   C   +L +  +L
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGF--CRNQELEKAFQL 470



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 17/339 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L  + +T + +I+ F + G +  A ++  +         ++ YN+L+   C 
Sbjct: 366 LDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCI 425

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L++ MI +GF+PD  +Y+ +++ +C + ++ +A +   EM  KG +P V  
Sbjct: 426 LGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVAT 485

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QGL     L     +  +M+  G   D  T+ SLI   C  G+++  + ++  + 
Sbjct: 486 YSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMI 545

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII---------- 234
           + G   D+ TY +LI   +K     EA RLL  L+ +   P    Y  +I          
Sbjct: 546 QKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKS 605

Query: 235 -----KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
                KG   +G  ++A      M  KG+  N  VY ++I    + G   +A N   EM 
Sbjct: 606 ALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEML 665

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             G  P S     +   L + GK    E  +LL+ +L+S
Sbjct: 666 HSGFAPHSVTIMALAKSLYHEGKE--VELNQLLDYTLKS 702



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +L+ ++C+    + A   + +M  +G  P+ RTY  L++ +   G +++A + ++
Sbjct: 343 VVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMK 402

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + GF P +   + L+ G    G +E A  ++ +MI++GF+ D+ +++++I   C++ 
Sbjct: 403 EMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E+E   ++   +   G+  DV+TY  LI  + K   + E   L   ++  G  P    Y 
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I      G  D A     EM  KG  P+   Y +LI    +  R  EA   L+++   
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE 582

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              P    ++ + D   NC   +    + L++
Sbjct: 583 ESVPNEITYNTLID---NCNNLEFKSALALMK 611



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 145/311 (46%), Gaps = 6/311 (1%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN--KCTAFNCQQCVLLYNSLLFA 61
            + ++  Y L  + Q+L+   EE   + + +   ++F   K + + C+    +++ ++ +
Sbjct: 85  ALHILTRYKLYKTAQSLA---EEVVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKS 141

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK-MREAQEFLQEMSDKGFNP 120
              V L + A +++      GF+P   +Y  +++A   + + ++ A+   +EM + G +P
Sbjct: 142 CARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSP 201

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   ++L++G   AG LE       +M + G + ++ T+N++I+  CK  ++    ++ 
Sbjct: 202 NVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLL 261

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  ++ +Y ++I  + + G + E   +L  + +  + P    +  +I G    
Sbjct: 262 RLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNV 321

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G F  A    +EM   G  PN   YT LI    + G    A  +L +M + GL P  R +
Sbjct: 322 GNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY 381

Query: 301 DLVTDGLKNCG 311
             + DG    G
Sbjct: 382 TTLIDGFSQQG 392


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  137 bits (346), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 164/361 (45%), Gaps = 39/361 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I  M+   +  SP+T +++ E +   G  D AV++F       C Q +  +N++L 
Sbjct: 110 VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILD 169

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY L R  +R  F  D  TY +++N WC   +  +A E L+EM ++G NP
Sbjct: 170 VLCKSKRVEKAYELFR-ALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +++G   AG +  A +   +M K+   +D+ T+ +++     +GE++    ++
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+   V+TY  +I  + K   ++ A  +   +V  G++P  + Y  +I+G+F  
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 348

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI---TMC-------------GRG--------- 275
           G+F         M+ +G  PN   Y M+I   + C             G G         
Sbjct: 349 GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTY 408

Query: 276 -----GRFVE--------AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
                G FV         A   L+EM E G  P    F+ V +GL   G    A++I  L
Sbjct: 409 NILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRL 468

Query: 323 E 323
           +
Sbjct: 469 Q 469



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 38/224 (16%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+    MK  +  +   T + ++  FG  G +  A  VF++         V  YN+++  
Sbjct: 250 WEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQV 309

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  +   M+R+G+ P+  TY +L+     +G+    +E +Q M ++G  P 
Sbjct: 310 LCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPN 369

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM--------------------------------- 148
            +  +++++       +E A  +  KM                                 
Sbjct: 370 FQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGK 429

Query: 149 -----IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
                +++GF+    TFN ++  +  +G   F  E+     K G
Sbjct: 430 LLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSG 473


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 135/294 (45%), Gaps = 3/294 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+ + K G V  A+EVF       C+     Y+SL++ L + +  H A ALI +M   G
Sbjct: 468 IIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDG 527

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY  L+   C   +   A    + M   G  P  +  ++L   L  +G  E A 
Sbjct: 528 ITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY 587

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                ++K+G VL   T+ SL++   K+G  EF   +   +   G  AD  TY +L+ A+
Sbjct: 588 SF---LVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQAL 644

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   ++EA  +L  +   G K     Y  II  M + G+ D A   F+EM   GH P+ 
Sbjct: 645 CKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSA 704

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             YT+ I+   + GR  EA + + EM   G+ P    +++  +G  + G  D A
Sbjct: 705 ITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCA 758



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 154/380 (40%), Gaps = 64/380 (16%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL----YNS 57
           ++  E+M+   L+   Q  +++ +   K G  + A        +F  ++ V+L    Y S
Sbjct: 552 FRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAY-------SFLVKKGVVLTKVTYTS 604

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+    +      A ALI +M+ +G   D  TY++L+ A C   K+ EA   L +M+ +G
Sbjct: 605 LVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRG 664

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
               +    +++  ++  G  + AK M N+MI  G      T+   I + CK G +E   
Sbjct: 665 VKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAG 724

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF------------------------- 212
            +   + + G+  DV TY + I      G +D AF                         
Sbjct: 725 HLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHF 784

Query: 213 --------------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                                     +LL  +V+ G  P    Y+ II G  +  + ++A
Sbjct: 785 LKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEA 844

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                 M  K   PN  +YTMLI  C     F +AA+++  M E G  P    +  +  G
Sbjct: 845 CVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITG 904

Query: 307 LKNCGKHDLAEKI--ELLEV 324
           L + G +D A+ +  +LLE+
Sbjct: 905 LCDEGDYDKAKALFCDLLEM 924



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 4/304 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+ + K G + +A+ +        C      YNSL+  LC  K    A  L+
Sbjct: 322 SVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDE-AEELL 380

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
              I +GF P   T+  ++N +C + K+ +A      M        ++   +L+  L+  
Sbjct: 381 NGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKK 440

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L+ AK  +N++   G   ++  + S+I+  CK G+V   +E++      G   +  TY
Sbjct: 441 HRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTY 500

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + +   + +A  L+  + EDG  P    Y  +I+G  ++ +FD+AF  F  M+ 
Sbjct: 501 SSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQ 560

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y +L     + GR  EA ++LV   + G+      +  + DG    G  + 
Sbjct: 561 NGLTPDEQAYNVLTDALCKSGRAEEAYSFLV---KKGVVLTKVTYTSLVDGFSKAGNTEF 617

Query: 316 AEKI 319
           A  +
Sbjct: 618 AAAL 621



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 141/356 (39%), Gaps = 44/356 (12%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L++   + +   T + ++  + + G +  A  +        C++    Y  L+  LCE +
Sbjct: 208 LLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETR 267

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L+  M++ G  P+  TY +L+   C  G++ +A+  L EM  +G  P V   +
Sbjct: 268 CVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYN 327

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC--KSGEVE---------- 174
            ++ G   +G L+ A  +   M   G   D  T+NSLI  +C  K  E E          
Sbjct: 328 AMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDEAEELLNGAIARG 387

Query: 175 --------------FCVE------------MYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                         +C              M  S CKL    D+  Y +LI  + K   +
Sbjct: 388 FSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKL----DLQAYGVLISVLIKKHRL 443

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA   L+ +  +G  P   +Y  II    + G+   A   F   + +G  PN   Y+ L
Sbjct: 444 KEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSL 503

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           I    +  +  +A   + +M E G+TP    +  +  G   C KH+      L E+
Sbjct: 504 IYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG--QCKKHEFDNAFRLFEM 557



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 34/334 (10%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L++SP+  +L +    +  + ++  +++++          + YN+++ A C+      A+
Sbjct: 144 LALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAH 203

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              R +   G   D  T   L+  +C +G +R+A   L  M   G         +L+QGL
Sbjct: 204 RYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGL 263

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A  ++  M++ G   +L T+  LI  +CK G +     +   + + G+   V
Sbjct: 264 CETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSV 323

Query: 193 STYKILIPAVSKAGMI----------------------------------DEAFRLLHNL 218
            TY  +I    K+G +                                  DEA  LL+  
Sbjct: 324 WTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDEAEELLNGA 383

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +  G  P    +  II G  +  + DDA    S M       +   Y +LI++  +  R 
Sbjct: 384 IARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRL 443

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            EA + L E+   GL+P    +  + D     GK
Sbjct: 444 KEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGK 477



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 36/265 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  L +L    +      L  +++++G +PD  TY  ++ A+C  G +  A  + + + 
Sbjct: 151 YNLALRSLLRFDMTEHMGKLYSQLVQEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLR 210

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G                                     +D  T N+L+   C++G++ 
Sbjct: 211 ESGME-----------------------------------MDTYTCNALLLGYCRTGDLR 235

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +  +G   +  +Y ILI  + +   + EA  LL  +++DG  P    Y  +I
Sbjct: 236 KACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLI 295

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G+ + G+  DA     EM  +G  P+   Y  +I    + GR  +A      M   G  
Sbjct: 296 RGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCN 355

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    ++ +  GL   GK D AE++
Sbjct: 356 PDDWTYNSLIHGLCG-GKPDEAEEL 379



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 19/227 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++ I   G  G +D A     +    +C+     Y  LL    ++ L +  Y
Sbjct: 735 VAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHY 794

Query: 73  A----------------LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
                            L+ RM++ G  P   TY+ ++  +C + ++ EA   L  M  K
Sbjct: 795 VDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGK 854

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
             +P      +L++   +    E A   V  MI+ GF   LE+++ LI  +C  G+ +  
Sbjct: 855 DISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGDYDKA 914

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
             ++  + ++    +   +KIL   + KAG +D   +LL + +E+ H
Sbjct: 915 KALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLL-SAMENRH 960



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 97/241 (40%), Gaps = 35/241 (14%)

Query: 1    MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            MW  I+L           T+  ++E   KHGL   AV                 Y+S++ 
Sbjct: 800  MWNWIKL----------DTVWQLLERMVKHGLNPTAVT----------------YSSIIA 833

Query: 61   ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              C+      A  L+  M+ K   P++  Y +L+   C      +A  F+  M + GF P
Sbjct: 834  GFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQP 893

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
             +     L+ GL + G  + AK +   +++  +  +   +  L + + K+G V+ C ++ 
Sbjct: 894  HLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLL 953

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAF---------RLLHNLVEDGHKPFPSLYA 231
             ++       D  TY ++   + +A  + E++         R+ H L+   H  + +   
Sbjct: 954  SAMENRHCRIDSETYSMVTNNIHEASGMYESYMCAPLVGQNRMQHALLGLAHLTYSASPV 1013

Query: 232  P 232
            P
Sbjct: 1014 P 1014


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 2/302 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +++   + G +  A+E F +         V  YNSL+  L    L+      +  M+ 
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +GF PD  T+ IL++  C  GK+ EAQ+ L+ M  KG  P +   + L+ GL   G LE 
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++   +  +G  L++ ++N LI   CK  +++    ++  +   GL     TY  LI 
Sbjct: 305 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIG 364

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A+ ++G +  A +L   +   G     S Y  ++ G+ + G  ++A   F  +K   H P
Sbjct: 365 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKP 424

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           N  V+++L+    R G+  EA     E+++ GL P +  ++++ +GL  C K  L+E ++
Sbjct: 425 NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL--CNKGMLSEAVK 482

Query: 321 LL 322
           LL
Sbjct: 483 LL 484



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 133/277 (48%), Gaps = 2/277 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           NC+  V  Y  ++ +LC+  +   A  +   MI  G +PD   Y+ L++  C  G+++EA
Sbjct: 141 NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 200

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            EF +EM  +G +  V   + L+ GL  AG  +     +N M+ +GF  D  TF  LI+ 
Sbjct: 201 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 260

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK G+V    ++   +   G   D+ TY  L+  +   G +++A +L  +L + G K  
Sbjct: 261 LCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 320

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  +I G  +  + D+AF  F EM+ KG  P+   Y  LI    + GR   A    V
Sbjct: 321 VFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 380

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           EM   G       + ++ DGL  C    L E I+L +
Sbjct: 381 EMQTCGQFLKLSTYCVLLDGL--CKNGHLEEAIDLFQ 415



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 4/299 (1%)

Query: 1   MWKTI----ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           +WK +     LM     S    T +++I+   K G V  A ++         +  +L YN
Sbjct: 231 LWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYN 290

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+  LC V     A  L   +  +G   +  +Y IL+N +C   K+ EA    +EM  K
Sbjct: 291 TLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK 350

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P     + L+  L  +G + +A+++  +M   G  L L T+  L++ +CK+G +E  
Sbjct: 351 GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEA 410

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           ++++ S+ K     ++  + IL+  + +AG ++EA++    + ++G +P    Y  +I G
Sbjct: 411 IDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILING 470

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +  +G   +A     +M+ KG  P+   + ++I    +     EA   L EM     +P
Sbjct: 471 LCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 529



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +++A ++F        +  V  YN L+   C+ +    A+ L   M  KG  P   TY
Sbjct: 300 GQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTY 359

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+ A C SG++R AQ+   EM   G    +    +L+ GL   G+LE A  +   + K
Sbjct: 360 NTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKK 419

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                ++E F+ L++ +C++G++E   + +  + K GL  D   Y ILI  +   GM+ E
Sbjct: 420 TEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSE 479

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +LL  + E G  P    +  II+ + +  +  +A     EM+ +   P+  V +ML+ 
Sbjct: 480 AVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLC 539

Query: 271 MC 272
           + 
Sbjct: 540 LA 541



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 106/212 (50%), Gaps = 9/212 (4%)

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +GF P       LV+G+     +  A Q+ ++M ++G   D +T+  LI  +CK+ +   
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGL 130

Query: 176 CVEMYYSV---CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            ++++  +   CK     DV TY ++I ++ K GM  EA  +   ++  G  P   +Y+ 
Sbjct: 131 AIKLHEKMKGNCK----GDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G+ R G+  +A  FF EM+ +G   +   Y  LI    R G + E   +L  M + G
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            +P +  F ++ DGL  C +  + E  ++LE+
Sbjct: 247 FSPDAFTFTILIDGL--CKEGKVGEAQQILEL 276



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 115/255 (45%), Gaps = 7/255 (2%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD--KGFNPPVRGRDLL 128
           A  L   M  KG   D +TY IL+N  C + K   A +  ++M    KG    V    ++
Sbjct: 96  AVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMI 152

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +  L   G    A  M ++MI  G + D+  ++SL++ +C+ G ++  +E +  +   G+
Sbjct: 153 IDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGI 212

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
            ADV TY  LI  +S+AG+  E    L+ +V+ G  P    +  +I G+ + G+  +A  
Sbjct: 213 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQ 272

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M  KG  P+   Y  L+      G+  +A      + + G+      ++++ +G  
Sbjct: 273 ILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGY- 331

Query: 309 NCGKHDLAEKIELLE 323
            C    + E   L E
Sbjct: 332 -CKDQKIDEAFRLFE 345



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 110/242 (45%), Gaps = 3/242 (1%)

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +++GF PD  T   LV   W  +G + +A +   EM++KG     +   +L+ GL  A  
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENG-IPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARK 127

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A ++  KM K     D+ T+  +I+++CK G     ++M+  +   G+  DV  Y  
Sbjct: 128 TGLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSS 186

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + + G + EA      +   G       Y  +I G+ R G + +   F + M  +G
Sbjct: 187 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 246

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   +T+LI    + G+  EA   L  M   G  P    ++ + +GL   G+ + A 
Sbjct: 247 FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDAT 306

Query: 318 KI 319
           K+
Sbjct: 307 KL 308



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 4/228 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL--YNSLL 59
           ++  E M+P  L  S  T + +I    + G V  A ++F +     C Q + L  Y  LL
Sbjct: 341 FRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT--CGQFLKLSTYCVLL 398

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             LC+      A  L + + +    P+   ++IL++  C +GK+ EA +   E+S  G  
Sbjct: 399 DGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLE 458

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++L+ GL N G L  A +++ +M ++G + D  TFN +I+ + K  E+   +++
Sbjct: 459 PDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQL 518

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              +       D +   +L+   S       A   L N ++ G    P
Sbjct: 519 LEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGVGSVP 566


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 2/287 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E+  +     C   ++ +N+L+  LC   LF   + ++ +M+  G  PD R YA +++  
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G +  A E L  M   G  P V   + L++GL +A   E  ++++ +M  +   LD 
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN L++  C++G V+  +E+   + + G   DV TY  +I    K G+IDEA  LL +
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G KP    Y  ++KG+    ++ DA    S+M  +G P N   +  LI    + G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +A   L +M   G +P    +  V DGL   GK D  E +ELL V
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTD--EALELLNV 532



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 145/326 (44%), Gaps = 35/326 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-------------- 66
           + II+   K G ++ A E+ N+  ++  +  V+ YN+LL  LC  +              
Sbjct: 301 ATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD 360

Query: 67  ---------------------LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
                                L      L+ +M+ +G +PD  TY  ++N +C  G + E
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDE 420

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ M+  G  P      ++++GL +A     A+ ++++MI+QG  L+  TFN+LI 
Sbjct: 421 AVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLIN 480

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  DEA  LL+ +V  G  P
Sbjct: 481 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y+ I   + R G+ +     F  ++      +  +Y  +I+   + G    A  +L
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCG 311
             M   G  P    + ++  GL + G
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEG 626



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K GL+D AV +    TA  C+   + Y  +L  LC  + +  A  L+ +M
Sbjct: 404 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 463

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G   +  T+  L+N  C  G + +A E L++M   G +P +     ++ GL  AG  
Sbjct: 464 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 523

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N M+ +G   +   ++S+   + + G +   ++M+ ++    + +D   Y  +
Sbjct: 524 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 583

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I ++ K G  + A   L  +V  G  P  S Y  +I+G+   G   +A    +E+  KG
Sbjct: 584 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 135/301 (44%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+ V ++     C     +Y+ +L A C    F  A  ++  +  +G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L+++   G  P V   + +++GL  A      +
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ +M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++++     +EM  K  P + 
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M E G  P    +  V +G   C +  + E + LL
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGF--CKEGLIDEAVMLL 425

Query: 323 E 323
           +
Sbjct: 426 K 426



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 118/269 (43%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  ++ ALC       A A++  M R+G  P    Y +++ A C  G  R A   L+++ 
Sbjct: 125 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 184

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G    V   +L++  + + G ++ A  ++  +   G   D+ ++N++++ +C +    
Sbjct: 185 ARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWG 244

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + ++    ++ T+  LI  + + G+ +    +L  +VE G  P   +YA II
Sbjct: 245 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 304

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  + A    + M   G  PN   Y  L+       R+ E    L EM +    
Sbjct: 305 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 364

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                F+++ D     G  D    IELLE
Sbjct: 365 LDDVTFNILVDFFCQNGLVD--RVIELLE 391



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 40/266 (15%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN+++   C       A    RR+     VP +  TY  +V A C+ G++ +A   L EM
Sbjct: 93  YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G  P      ++++     G   SA +++  +  +G  LD+   N ++  IC  G V
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                                              DEA  LL +L   G +P    Y  +
Sbjct: 209 -----------------------------------DEALHLLRDLPSFGCEPDVVSYNAV 233

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +KG+    ++        EM     PPN   +  LI+   R G F      L +M E G 
Sbjct: 234 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGC 293

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
           TP  R +  + DG+   G  ++A +I
Sbjct: 294 TPDIRMYATIIDGICKEGHLEVAHEI 319



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 35/208 (16%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           ++P T + +I    K GLV+ A+E                                   L
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIE-----------------------------------L 494

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L  
Sbjct: 495 LKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSR 554

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +    QM + +       D   +N++I ++CK GE E  +E    +   G   + ST
Sbjct: 555 EGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNEST 614

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           Y ILI  ++  G + EA  +L  L   G
Sbjct: 615 YTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G ++  +++F+       +   +LYN+++ +LC+     
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETE 594

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A   +  M+  G VP++ TY IL+    S G ++EAQE L E+  KG
Sbjct: 595 RAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 149/305 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    K G +D A++  N   +  CQ  V+ +N +L ++
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C    +  A  L+  M+RKGF P   T+ IL+N  C  G +  A + L++M   G  P  
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G      ++ A + + +M+ +G   D+ T+N+++  +CK G+VE  VE+   
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + TY  +I  ++KAG   +A +LL  +     KP    Y+ ++ G+ R G+
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A  FF E +  G  PN   +  ++    +  +   A ++LV M   G  P    + +
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTI 559

Query: 303 VTDGL 307
           + +GL
Sbjct: 560 LIEGL 564



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 149/301 (49%), Gaps = 3/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G ++NA+ V ++    +    V+ YN++L +LC+      A  ++ RM
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM 230

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   PD  TY IL+ A C    +  A + L EM D+G  P V   ++LV G+   G L
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G      ++   + + G    V T+ IL
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G++  A  +L  + + G +P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  ++T   + G+  +A   L +++  G +P+   ++ V DGL   GK   A K
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 319 I 319
           +
Sbjct: 471 L 471



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 149/341 (43%), Gaps = 37/341 (10%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SVSP   T + I+      G +  A+EV ++    +C   V+ Y  L+ A C       
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGH 257

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  M  +G  PD  TY +LVN  C  G++ EA +FL +M   G  P V   +++++
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------------- 171
            + + G    A++++  M+++GF   + TFN LI  +C+ G                   
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 172 ----------------EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
                           +++  +E    +   G   D+ TY  ++ A+ K G +++A  +L
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + L   G  P    Y  +I G+ + G+   A     EM+ K   P+   Y+ L+    R 
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G+  EA  +  E   MG+ P +  F+ +  GL    + D A
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRA 538



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 123/244 (50%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T +++I    + GL+  A+++  K     CQ   L YN LL   C+ K    A  
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            + RM+ +G  PD  TY  ++ A C  GK+ +A E L ++S KG +P +   + ++ GL 
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            AG    A +++++M  +    D  T++SL+  + + G+V+  ++ ++   ++G+  +  
Sbjct: 461 KAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAV 520

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+  ++  + K+   D A   L  ++  G KP  + Y  +I+G+   G   +A    +E+
Sbjct: 521 TFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580

Query: 254 KIKG 257
             KG
Sbjct: 581 CNKG 584



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 132/267 (49%), Gaps = 5/267 (1%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C +     A  ++  +   G VPD  TY ++++ +C +G++  A   L  MS  
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-- 199

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
             +P V   + +++ L ++G L+ A +++++M+++    D+ T+  LIE  C+   V   
Sbjct: 200 -VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHA 258

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++   +   G   DV TY +L+  + K G +DEA + L+++   G +P    +  I++ 
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRS 318

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           M   G++ DA    ++M  KG  P+   + +LI    R G    A + L +M + G  P 
Sbjct: 319 MCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           S  ++ +  G   C +  +   IE LE
Sbjct: 379 SLSYNPLLHGF--CKEKKMDRAIEYLE 403



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 5/214 (2%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           +P +LS +P     ++  F K   +D A+E   +  +  C   ++ YN++L ALC+    
Sbjct: 376 QPNSLSYNP-----LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKV 430

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  ++ ++  KG  P   TY  +++    +GK  +A + L EM  K   P       L
Sbjct: 431 EDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSL 490

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V GL   G ++ A +  ++  + G   +  TFNS++  +CKS + +  ++    +   G 
Sbjct: 491 VGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGC 550

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
             + ++Y ILI  ++  GM  EA  LL+ L   G
Sbjct: 551 KPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 113/257 (43%), Gaps = 36/257 (14%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ E  +FL+ M   G  P +     L++G    G    A +++  +   G V D+ T
Sbjct: 115 TGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVIT 174

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N +I   CK+GE+   + +            Y+     LC                   
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY ILI A  +   +  A +LL  + + G  P    Y  ++ G+ + G+ D+A 
Sbjct: 235 CYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAI 294

Query: 248 CFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            F ++M   G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + 
Sbjct: 295 KFLNDMPSSGCQPNVITHNIILRSMCST-GRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C K  L   I++LE
Sbjct: 354 L--CRKGLLGRAIDILE 368



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 5/191 (2%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           ++  G LE   + +  M+  G V D+    +LI   C+ G+     ++   +   G   D
Sbjct: 112 MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPD 171

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY ++I    KAG I+ A  +L  +      P    Y  I++ +   G+   A     
Sbjct: 172 VITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLD 228

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  +   P+   YT+LI    R      A   L EM + G TP    ++++ +G+  C 
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI--CK 286

Query: 312 KHDLAEKIELL 322
           +  L E I+ L
Sbjct: 287 EGRLDEAIKFL 297



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+  +L     T S ++    + G VD A++ F++      +   + +NS++  L
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C+ +    A   +  MI +G  P++ +Y IL+      G  +EA E L E+ +KG 
Sbjct: 530 CKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  137 bits (344), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 158/357 (44%), Gaps = 37/357 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++++     ++     +L++    + G VD  VE+  K  +F C+  ++ YN++L  L
Sbjct: 164 RALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGL 223

Query: 63  CEVK-----------------------------------LFHGAYALIRRMIRKGFVPDK 87
           C  K                                   LF   +  + +M   G  PD 
Sbjct: 224 CMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDL 283

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R YA +++  C  G    A + L  M   G  P V   + +++GL +A   E A+ ++ +
Sbjct: 284 RMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAE 343

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++   LD  TFN L++  C++G V+  +E+   + + G   DV TY  +I    K G+
Sbjct: 344 MFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGL 403

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +DEA  LL N+   G KP    Y  ++KG+ R  ++ DA    S M  +G  PN   +  
Sbjct: 404 VDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNT 463

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           LI    + G   +A   L +M   G +P    +  V DGL   GK +  E +ELL V
Sbjct: 464 LINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTE--EALELLNV 518



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 134/270 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +     C   V+ Y +++   C+  L   A  L++ M
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   C + +  +AQE +  M  +G  P     + L+  +   G +
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ E  +E+   +   G+  +   Y  +
Sbjct: 475 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSM 534

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S+ G  D+  ++  ++ +   +   +LY  +I  + +R + D A  FF+ M   G 
Sbjct: 535 ASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGC 594

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            PN   YT+LI      G   EA + L E+
Sbjct: 595 MPNESTYTILIRGLASEGLVREAQDLLSEL 624



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 122/257 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+   C+  L      L+ +M+  G +PD  TY  ++N +C  G + EA   L+ MS
Sbjct: 356 FNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMS 415

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      ++++GL  A     A+++++ MI+QG + +  TFN+LI  +CK G VE
Sbjct: 416 ACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVE 475

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E+   +   G   D+ +Y  +I  + KAG  +EA  LL+ ++  G  P   +Y+ + 
Sbjct: 476 QAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMA 535

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + R G+ D     F  ++      +  +Y  +I+   +      A ++   M   G  
Sbjct: 536 SALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCM 595

Query: 295 PISRCFDLVTDGLKNCG 311
           P    + ++  GL + G
Sbjct: 596 PNESTYTILIRGLASEG 612



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 135/301 (44%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+      GL+ +A+ V ++     C     + + +L A C    F  A   ++ +  KG
Sbjct: 114 IVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG 173

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     ++V+A C  G + E  E L+++   G  P +   + +++GL  A   +  +
Sbjct: 174 CTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVE 233

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ +M++ G   ++ TFN+LI  +C++G  E   E    + + G   D+  Y  +I  +
Sbjct: 234 ELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGI 293

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  + A  +L  +   G KP    Y  ++KG+    ++++A    +EM  +  P + 
Sbjct: 294 CKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDD 353

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M E G  P    +  V +G   C +  + E + LL
Sbjct: 354 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGF--CKEGLVDEAVMLL 411

Query: 323 E 323
           +
Sbjct: 412 K 412



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  ++ +LC   L   A  ++  M  +G         +++ A C  G  R A   LQ + 
Sbjct: 111 YFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLH 170

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG        +L+V  +   G ++   +++ K+   G   D+ ++N++++ +C +   +
Sbjct: 171 AKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWD 230

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + ++G   +V+T+  LI  + + G+ ++    L  + E G  P   +YA II
Sbjct: 231 DVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATII 290

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  + A    S M   G  PN   Y  ++       R+ EA + L EM +    
Sbjct: 291 DGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCP 350

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                F+++ D     G  D    IELLE
Sbjct: 351 LDDVTFNILVDFFCQNGLVD--RVIELLE 377



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 35/203 (17%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T + +I    K GLV+ A+E                                   L+
Sbjct: 457 NPVTFNTLINFMCKKGLVEQAIE-----------------------------------LL 481

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           ++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG  P       +   L   
Sbjct: 482 KQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSRE 541

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G  +   QM + +       D   +N++I ++CK  E +  ++ +  +   G   + STY
Sbjct: 542 GRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 601

Query: 196 KILIPAVSKAGMIDEAFRLLHNL 218
            ILI  ++  G++ EA  LL  L
Sbjct: 602 TILIRGLASEGLVREAQDLLSEL 624



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  ++P T+  S +     + G  D  +++F+       +    LYN+++ +LC+     
Sbjct: 521 NKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETD 580

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            A      M+  G +P++ TY IL+    S G +REAQ+ L E+  +
Sbjct: 581 RAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVREAQDLLSELCSR 627


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A E++N+          + YNSL+   C+    H A  +   M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY+IL+N++C + ++ +     +E+S KG  P     + LV G   +G L
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +AK++  +M+ +G    + T+  L++ +C +GE+   +E++  + K  +   +  Y I+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  +D+A+ L  +L + G KP    Y  +I G+ ++G   +A   F +MK  G 
Sbjct: 497 IHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y +LI     G   + +   + EM   G +  S    +V D L +
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 607



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 141/312 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M  Y       T   ++    K G    A+++F K    N +  V+ Y+ ++ +LC+
Sbjct: 198 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 257

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  A +L   M  KG   D  TY+ L+   C+ GK  +  + L+EM  +   P V  
Sbjct: 258 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 317

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+   +  G L  AK++ N+MI +G   D  T+NSLI+  CK   +    +M+  + 
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   D+ TY ILI +  KA  +D+  RL   +   G  P    Y  ++ G  + G+ +
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +G PP+   Y +L+      G   +A     +M +  +T     ++++ 
Sbjct: 438 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 497

Query: 305 DGLKNCGKHDLA 316
            G+ N  K D A
Sbjct: 498 HGMCNASKVDDA 509



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 146/354 (41%), Gaps = 39/354 (11%)

Query: 7   LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L + + L   P T+  S ++  F   G V  AV + ++      +  ++  ++L+  LC 
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTY---------------------------------- 90
                 A  LI RM+  GF PD+ TY                                  
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 91  -AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +I++++ C  G   +A     EM  KG    V     L+ GL N G  +   +M+ +MI
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +  + D+ TF++LI+   K G++    E+Y  +   G+  D  TY  LI    K   + 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA ++   +V  G +P    Y+ +I    +  + DD    F E+  KG  PN   Y  L+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               + G+   A     EM   G+ P    + ++ DGL  C   +L + +E+ E
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL--CDNGELNKALEIFE 479



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 123/250 (49%), Gaps = 2/250 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  K    A++++ R  + G+ PD  T++ LVN +C  G++ EA   +  M +    P +
Sbjct: 116 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 175

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL   G +  A  ++++M++ GF  D  T+  ++  +CKSG     ++++  
Sbjct: 176 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 235

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  + A V  Y I+I ++ K G  D+A  L + +   G K     Y+ +I G+   G+
Sbjct: 236 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      EM  +   P+   ++ LI +  + G+ +EA     EM   G+ P +  ++ 
Sbjct: 296 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 355

Query: 303 VTDGL--KNC 310
           + DG   +NC
Sbjct: 356 LIDGFCKENC 365



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 4/288 (1%)

Query: 29  KHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           ++G+VD    +A+++F            + +N L  A+   K +       + M   G  
Sbjct: 43  RNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE 102

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D  T  I++N +C   K+  A   L      G+ P       LV G    G +  A  +
Sbjct: 103 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVAL 162

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V++M++     DL T ++LI  +C  G V   + +   + + G   D  TY  ++  + K
Sbjct: 163 VDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCK 222

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G    A  L   + E   K     Y+ +I  + + G FDDA   F+EM++KG   +   
Sbjct: 223 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           Y+ LI      G++ + A  L EM    + P    F  + D     GK
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 330



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 112/251 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I  + +   +  A  V  +      +   + +++L+   C       A AL+ RM
Sbjct: 107 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 166

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     PD  T + L+N  C  G++ EA   +  M + GF P       ++  L  +G  
Sbjct: 167 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  KM ++     +  ++ +I+++CK G  +  + ++  +   G+ ADV TY  L
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G  D+  ++L  ++     P    ++ +I    + G+  +A   ++EM  +G 
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346

Query: 259 PPNRPVYTMLI 269
            P+   Y  LI
Sbjct: 347 APDTITYNSLI 357



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 64/166 (38%)

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D+ T   +I   C+  ++ F   +     KLG   D  T+  L+      G + E
Sbjct: 99  NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 158

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  +VE   +P     + +I G+  +G+  +A      M   G  P+   Y  ++ 
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 218

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              + G    A +   +M E  +      + +V D L   G  D A
Sbjct: 219 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A E++N+          + YNSL+   C+    H A  +   M
Sbjct: 346 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 405

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY+IL+N++C + ++ +     +E+S KG  P     + LV G   +G L
Sbjct: 406 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 465

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +AK++  +M+ +G    + T+  L++ +C +GE+   +E++  + K  +   +  Y I+
Sbjct: 466 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  +D+A+ L  +L + G KP    Y  +I G+ ++G   +A   F +MK  G 
Sbjct: 526 IHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 585

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y +LI     G   + +   + EM   G +  S    +V D L +
Sbjct: 586 TPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSD 636



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 141/312 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M  Y       T   ++    K G    A+++F K    N +  V+ Y+ ++ +LC+
Sbjct: 227 IDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCK 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  A +L   M  KG   D  TY+ L+   C+ GK  +  + L+EM  +   P V  
Sbjct: 287 DGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVT 346

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+   +  G L  AK++ N+MI +G   D  T+NSLI+  CK   +    +M+  + 
Sbjct: 347 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 406

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   D+ TY ILI +  KA  +D+  RL   +   G  P    Y  ++ G  + G+ +
Sbjct: 407 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 466

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +G PP+   Y +L+      G   +A     +M +  +T     ++++ 
Sbjct: 467 AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIII 526

Query: 305 DGLKNCGKHDLA 316
            G+ N  K D A
Sbjct: 527 HGMCNASKVDDA 538



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 146/354 (41%), Gaps = 39/354 (11%)

Query: 7   LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L + + L   P T+  S ++  F   G V  AV + ++      +  ++  ++L+  LC 
Sbjct: 157 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 216

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTY---------------------------------- 90
                 A  LI RM+  GF PD+ TY                                  
Sbjct: 217 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 276

Query: 91  -AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +I++++ C  G   +A     EM  KG    V     L+ GL N G  +   +M+ +MI
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +  + D+ TF++LI+   K G++    E+Y  +   G+  D  TY  LI    K   + 
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 396

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA ++   +V  G +P    Y+ +I    +  + DD    F E+  KG  PN   Y  L+
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               + G+   A     EM   G+ P    + ++ DGL  C   +L + +E+ E
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGL--CDNGELNKALEIFE 508



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 123/250 (49%), Gaps = 2/250 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  K    A++++ R  + G+ PD  T++ LVN +C  G++ EA   +  M +    P +
Sbjct: 145 CRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDL 204

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL   G +  A  ++++M++ GF  D  T+  ++  +CKSG     ++++  
Sbjct: 205 VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 264

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  + A V  Y I+I ++ K G  D+A  L + +   G K     Y+ +I G+   G+
Sbjct: 265 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 324

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      EM  +   P+   ++ LI +  + G+ +EA     EM   G+ P +  ++ 
Sbjct: 325 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 384

Query: 303 VTDGL--KNC 310
           + DG   +NC
Sbjct: 385 LIDGFCKENC 394



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 120/288 (41%), Gaps = 4/288 (1%)

Query: 29  KHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           ++G+VD    +A+++F            + +N L  A+   K +       + M   G  
Sbjct: 72  RNGIVDIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE 131

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D  T  I++N +C   K+  A   L      G+ P       LV G    G +  A  +
Sbjct: 132 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVAL 191

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V++M++     DL T ++LI  +C  G V   + +   + + G   D  TY  ++  + K
Sbjct: 192 VDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCK 251

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G    A  L   + E   K     Y+ +I  + + G FDDA   F+EM++KG   +   
Sbjct: 252 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 311

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           Y+ LI      G++ + A  L EM    + P    F  + D     GK
Sbjct: 312 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 112/251 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I  + +   +  A  V  +      +   + +++L+   C       A AL+ RM
Sbjct: 136 TMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRM 195

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     PD  T + L+N  C  G++ EA   +  M + GF P       ++  L  +G  
Sbjct: 196 VEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 255

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  KM ++     +  ++ +I+++CK G  +  + ++  +   G+ ADV TY  L
Sbjct: 256 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 315

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G  D+  ++L  ++     P    ++ +I    + G+  +A   ++EM  +G 
Sbjct: 316 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 375

Query: 259 PPNRPVYTMLI 269
            P+   Y  LI
Sbjct: 376 APDTITYNSLI 386



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 64/166 (38%)

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D+ T   +I   C+  ++ F   +     KLG   D  T+  L+      G + E
Sbjct: 128 NGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSE 187

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  +VE   +P     + +I G+  +G+  +A      M   G  P+   Y  ++ 
Sbjct: 188 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLN 247

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              + G    A +   +M E  +      + +V D L   G  D A
Sbjct: 248 RLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 293


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 2/317 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    ++ S  T +++I        +D A+E+F    +  C+     +N L+ A
Sbjct: 205 YKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A+ L++RM   G VPD  TY+ L++  CS  ++ +A+  L++M  +   P 
Sbjct: 265 HCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPT 324

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V  ++ L+ GL  AG ++ A+++++ M+  G   D+ T+N+L+   C++G+ E   E+  
Sbjct: 325 VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLS 384

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL  +V TY  L+  + KA  + EA  +   +   G  P    Y  +I G    G
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI--SRC 299
           Q D     F EM   G  P+  VY  L     + GR   A   L E  E   +       
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV 504

Query: 300 FDLVTDGLKNCGKHDLA 316
           +    DGL   GK ++A
Sbjct: 505 YRFAVDGLLEAGKMEMA 521



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 150/312 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N+S    +  ++I+   K G +++A  +F K          + Y SL+  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L   M R+G  P   TY ++++A C  G + EA + +++M + G  P V   + 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL  +  +E A  + N+M + G   +  + N++I  +C+  +++   ++++ +    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  +Y ILI  ++KAG ++EA++L   +++ G  P    Y  +I GM      D+A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M+ KG  P+R  + +LI    + G+  EA   L  MT+ G  P    +  +  GL
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 308 KNCGKHDLAEKI 319
            +  + D A  +
Sbjct: 301 CSIARVDDARHL 312



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 140/304 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP T +++I+   K G+++ A ++  K         V+ YN+++  LC+      A  L 
Sbjct: 79  SPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLF 138

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M R G  P++R++  ++   C   K+ +A +   EM  K   P      +L+ GL  A
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKA 198

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A ++  +M+  G      T+N +I  +C +  ++  +E++ S+   G      T+
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A  K G +DEAFRLL  + +DGH P    Y+ +I G+    + DDA     +M  
Sbjct: 259 NILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P       LI    + GR  EA   L  M   G +P    ++ +  G    G+ + 
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 378

Query: 316 AEKI 319
           A ++
Sbjct: 379 AREL 382



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 148/324 (45%), Gaps = 5/324 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  ++     +  ++I+   K G ++ A ++F +          + YN ++  +C    
Sbjct: 176 MEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L + M  KG  P + T+ IL++A C  GK+ EA   L+ M+D G  P V     
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL +   ++ A+ ++  M+K+     + T N+LI  +CK+G ++   E+  ++   G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY  L+    +AG  + A  LL ++V  G  P    Y  ++ G+ +  +  +A 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F++MK  G  PN   YT LI      G+         EM   G++P    +  +   L
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 308 KNCGKHDLAEKIELL---EVSLRS 328
              G+   A  +E+L     SLRS
Sbjct: 476 CKSGRS--ARALEILREGRESLRS 497



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 118/263 (44%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A +VF++  A +       Y  L+  L +    + AY L +RM+  G  P   TY +
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNV 225

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           +++  C +  + EA E  + M  KG  P     ++L+      G L+ A +++ +M   G
Sbjct: 226 VIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDG 285

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D+ T+++LI  +C    V+    +   + K      V T   LI  + KAG I EA 
Sbjct: 286 HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAR 345

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +L  +V  G  P    Y  ++ G  R GQ + A    S+M  +G  PN   YT L++  
Sbjct: 346 EVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405

Query: 273 GRGGRFVEAANYLVEMTEMGLTP 295
            +  R  EA     +M   G  P
Sbjct: 406 CKANRLPEACGVFAQMKSSGCAP 428



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K   V+ A+ +FN+     C      +N+++  LC+      A  +   M
Sbjct: 117 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  +Y IL++    +GK+ EA +  Q M D G  P     ++++ G+  A  L
Sbjct: 177 EAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTL 236

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   M  +G      TFN LI+  CK G+++    +   +   G   DV TY  L
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +     +D+A  LL ++V+   KP       +I G+ + G+  +A      M   G 
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+    R G+   A   L +M   GL P    +  +  GL
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 109/272 (40%), Gaps = 37/272 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I        VD+A  +        C+  V+  N+L+  LC+      A  ++  M
Sbjct: 292 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 351

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  LV+  C +G+   A+E L +M  +G  P V     LV GL  A  L
Sbjct: 352 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------------------ 180
             A  +  +M   G   +L T+ +LI   C +G+V+  ++++                  
Sbjct: 412 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 471

Query: 181 -YSVCKLGLCADV------------------STYKILIPAVSKAGMIDEAFRLLHNLVED 221
              +CK G  A                      Y+  +  + +AG ++ A   + ++V  
Sbjct: 472 AAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRG 531

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           G  P P   A ++ G+ + GQ  +A     E+
Sbjct: 532 GQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y   +  L E      A   +R M+R G +P     A LV   C SG+  EA+  L+E+
Sbjct: 504 VYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563

Query: 114 SDKGFNPPVRGRDL-LVQGLLNAGY 137
            D  +    RG+    V+ ++  GY
Sbjct: 564 MDLAYGGKARGKAAKFVEEMVGKGY 588


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 3/312 (0%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP   T S I+  F   G  + A  +F +    N     + +N L+  L +  +  
Sbjct: 145 NRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMIL 204

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +   MI KG  P+  TY  L++ +CS  +M EAQ+    M  KG  P VR  ++L+
Sbjct: 205 EAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILI 264

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +G   +G ++ AK ++ +M  +    D  T+++L++  C+ G  +   ++   +   GL 
Sbjct: 265 KGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLL 324

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+ TY I++  + K G +DEAF LL  + E   +P   +Y  +I+GM   G+ + A   
Sbjct: 325 PDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAAREL 384

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LK 308
           FS + +KG  P+   YT++I+   +GG   EA     +M   G  P S  ++++  G L+
Sbjct: 385 FSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLR 444

Query: 309 NCGKHDLAEKIE 320
           N    +    IE
Sbjct: 445 NGDTSNAGRLIE 456



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 155/316 (49%), Gaps = 4/316 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           + L + P   T S ++        + +AV++F++      +  V+ Y++++  LC++   
Sbjct: 39  FKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGST 98

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  L+++M  KG  P+   Y+ ++++ C    + EA EFL EM ++G +P V     +
Sbjct: 99  TMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSI 158

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G  N G    A  +  +M+++  + D  TFN L++ + K G +     ++ ++ + G+
Sbjct: 159 LHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGV 218

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V+TY  L+        +DEA +L + +V  G  P    Y  +IKG  + G+ D+A  
Sbjct: 219 EPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKG 278

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EM  K   P+   Y+ L+    + GR  +A   L EM   GL P    + +V DGL 
Sbjct: 279 LLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGL- 337

Query: 309 NCGKHDLAEKIELLEV 324
            C +  L E  ELL+ 
Sbjct: 338 -CKQGHLDEAFELLKA 352



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 136/287 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G++  A  VF        +  V  YN+L+   C       A  L   M
Sbjct: 189 TFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P  R+Y IL+   C SG++ EA+  L EMS K   P       L++G    G  
Sbjct: 249 VRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRP 308

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++++ +M   G + DL T++ +++ +CK G ++   E+  ++ +  +  ++  Y IL
Sbjct: 309 QDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTIL 368

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++ A  L  NL   G +P    Y  +I G+ + G  ++A   F +M + G 
Sbjct: 369 IQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGC 428

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            PN   Y ++I    R G    A   + EM   G +  S  F +++D
Sbjct: 429 LPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 149/301 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K G    A+++  K     C+  V++Y++++ +LC+ KL   A   +  M
Sbjct: 84  TYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY+ +++ +C+ G+  EA    ++M ++   P     ++LV GL   G +
Sbjct: 144 VNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMI 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ +   MI++G   ++ T+N+L++  C   +++   +++  + + G    V +Y IL
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+G IDEA  LL  +      P    Y+ ++KG  + G+  DA     EM+  G 
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y++++    + G   EA   L  M E  + P    + ++  G+ N GK + A +
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARE 383

Query: 319 I 319
           +
Sbjct: 384 L 384



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 121/257 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +++ +     +D A ++FN      C   V  YN L+   C+      A  L+  
Sbjct: 223 NTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAE 282

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  K   PD  TY+ L+  +C  G+ ++AQ+ L+EM   G  P +    +++ GL   G+
Sbjct: 283 MSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH 342

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A +++  M +     ++  +  LI+ +C  G++E   E++ ++   G+  DV TY +
Sbjct: 343 LDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTV 402

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K G+ +EA  L  ++   G  P    Y  II+G  R G   +A     EM  +G
Sbjct: 403 MISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRG 462

Query: 258 HPPNRPVYTMLITMCGR 274
              +   + ML  +  R
Sbjct: 463 FSADSSTFQMLSDLESR 479



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 35/287 (12%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           FH A++++  M + G  P+  T++ L+N   S  K+ +A +   EM   G+ P V     
Sbjct: 28  FHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYST 87

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----SGEVEFCVEM---- 179
           ++ GL   G    A Q++ KM ++G   ++  ++++I+++CK    +  +EF  EM    
Sbjct: 88  IINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRG 147

Query: 180 -------YYSV----CKLG----------------LCADVSTYKILIPAVSKAGMIDEAF 212
                  Y S+    C LG                +  D  T+ IL+  +SK GMI EA 
Sbjct: 148 ISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQ 207

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +   ++E G +P  + Y  ++ G   + Q D+A   F+ M  KG  P+   Y +LI   
Sbjct: 208 CVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGH 267

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + GR  EA   L EM+   LTP +  +  +  G    G+   A+K+
Sbjct: 268 CKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKL 314



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 110/245 (44%), Gaps = 4/245 (1%)

Query: 85  PDKRTYAILVNAWCSSG--KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           PD  T  IL+N +C S       A   L  M   G  P       L+ GL +   +  A 
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ ++M+K G+  D+ T++++I  +CK G     +++   + + G   +V  Y  +I ++
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  +I EA   L  +V  G  P    Y+ I+ G    G+ ++A   F +M  +   P+ 
Sbjct: 128 CKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G  +EA      M E G+ P    ++ + DG   C +  + E  +L 
Sbjct: 188 VTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGY--CSQSQMDEAQKLF 245

Query: 323 EVSLR 327
            + +R
Sbjct: 246 NIMVR 250



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 74/162 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            K +E M+ Y L     T S++++   K G +D A E+         +  + +Y  L+  
Sbjct: 312 QKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQG 371

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +C       A  L   +  KG  PD  TY ++++     G   EA E  ++M+  G  P 
Sbjct: 372 MCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPN 431

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
               ++++QG L  G   +A +++ +M+ +GF  D  TF  L
Sbjct: 432 SCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 97/213 (45%), Gaps = 6/213 (2%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +++P T+  S +++ F + G   +A ++  +  ++     ++ Y+ +L  LC+      A
Sbjct: 287 ALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEA 346

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L++ M      P+   Y IL+   C+ GK+  A+E    +  KG  P V    +++ G
Sbjct: 347 FELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISG 406

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           LL  G    A ++   M   G + +  T+N +I+   ++G+      +   +   G  AD
Sbjct: 407 LLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSAD 466

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
            ST+++L    S+    DE   L  +    G K
Sbjct: 467 SSTFQMLSDLESR----DEIISLFMHGSSQGRK 495


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 2/287 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E+  +     C   ++ +N+L+  LC   LF   + ++ +M+  G  PD R YA +++  
Sbjct: 285 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G +  A E L  M   G  P V   + L++GL +A   E  ++++ +M  +   LD 
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN L++  C++G V+  +E+   + + G   DV TY  +I    K G+IDEA  LL +
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 464

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G KP    Y  ++KG+    ++ DA    S+M  +G P N   +  LI    + G 
Sbjct: 465 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 524

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +A   L +M   G +P    +  V DGL   GK D  E +ELL V
Sbjct: 525 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTD--EALELLNV 569



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 35/326 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-------------- 66
           + II+   K G ++ A E+ N+  ++  +  V+ YN+LL  LC  +              
Sbjct: 338 ATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD 397

Query: 67  ---------------------LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
                                L      L+ +M+  G +PD  TY  ++N +C  G + E
Sbjct: 398 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDE 457

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ M+  G  P      ++++GL +A     A+ ++++MI+QG  L+  TFN+LI 
Sbjct: 458 AVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLIN 517

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  DEA  LL+ +V  G  P
Sbjct: 518 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 577

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y+ I   + R G+ +     F  ++      +  +Y  +I+   + G    A  +L
Sbjct: 578 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 637

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCG 311
             M   G  P    + ++  GL + G
Sbjct: 638 AYMVSSGCVPNESTYTILIRGLASEG 663



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 117/239 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K GL+D AV +    TA  C+   + Y  +L  LC  + +  A  L+ +M
Sbjct: 441 TYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQM 500

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G   +  T+  L+N  C  G + +A E L++M   G +P +     ++ GL  AG  
Sbjct: 501 IQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKT 560

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N M+ +G   +   ++S+   + + G +   ++M+ ++    + +D   Y  +
Sbjct: 561 DEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAV 620

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I ++ K G  + A   L  +V  G  P  S Y  +I+G+   G   +A    +E+  KG
Sbjct: 621 ISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 135/301 (44%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+ V ++     C     +Y+ +L A C    F  A  ++  +  +G
Sbjct: 165 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 224

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + EA   L+++   G  P V   + +++GL  A      +
Sbjct: 225 CALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 284

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ +M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 285 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++ A  +L+ +   G KP    Y  ++KG+    ++++     +EM  K  P + 
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M E G  P    +  V +G   C +  + E + LL
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 462

Query: 323 E 323
           +
Sbjct: 463 K 463



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 118/269 (43%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  ++ ALC       A A++  M R+G  P    Y +++ A C  G  R A   L+++ 
Sbjct: 162 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 221

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G    V   +L++  + + G ++ A  ++  +   G   D+ ++N++++ +C +    
Sbjct: 222 ARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWG 281

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + ++    ++ T+  LI  + + G+ +    +L  +VE G  P   +YA II
Sbjct: 282 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 341

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  + A    + M   G  PN   Y  L+       R+ E    L EM +    
Sbjct: 342 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 401

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                F+++ D     G  D    IELLE
Sbjct: 402 LDDVTFNILVDFFCQNGLVD--RVIELLE 428



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 103/266 (38%), Gaps = 40/266 (15%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN+++   C       A    RR+     VP +  TY  +V A C+ G++ +A   L EM
Sbjct: 130 YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 185

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G  P      ++++     G   SA +++  +  +G  LD+   N ++  IC  G V
Sbjct: 186 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 245

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                                              DEA  LL +L   G +P    Y  +
Sbjct: 246 -----------------------------------DEALHLLRDLPSFGCEPDVVSYNAV 270

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +KG+    ++        EM     PPN   +  LI+   R G F      L +M E G 
Sbjct: 271 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGC 330

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
           TP  R +  + DG+   G  ++A +I
Sbjct: 331 TPDIRMYATIIDGICKEGHLEVAHEI 356



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 35/208 (16%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           ++P T + +I    K GLV+ A+E                                   L
Sbjct: 507 LNPITFNTLINFLCKKGLVEQAIE-----------------------------------L 531

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L  
Sbjct: 532 LKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSR 591

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +    QM + +       D   +N++I ++CK GE E  +E    +   G   + ST
Sbjct: 592 EGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNEST 651

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           Y ILI  ++  G + EA  +L  L   G
Sbjct: 652 YTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G ++  +++F+       +   +LYN+++ +LC+     
Sbjct: 572 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETE 631

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A   +  M+  G VP++ TY IL+    S G ++EAQE L E+  KG
Sbjct: 632 RAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 679


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 2/317 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K    M    ++ S  T +++I        +D A+E+F    +  C+     +N L+ A
Sbjct: 205 YKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDA 264

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A+ L++RM   G VPD  TY+ L++  CS  ++ +A+  L++M  +   P 
Sbjct: 265 HCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPT 324

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V  ++ L+ GL  AG ++ A+++++ M+  G   D+ T+N+L+   C++G+ E   E+  
Sbjct: 325 VVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLS 384

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL  +V TY  L+  + KA  + EA  +   +   G  P    Y  +I G    G
Sbjct: 385 DMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAG 444

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI--SRC 299
           Q D     F EM   G  P+  VY  L     + GR   A   L E  E   +       
Sbjct: 445 QVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEV 504

Query: 300 FDLVTDGLKNCGKHDLA 316
           +    DGL + GK ++A
Sbjct: 505 YRFAVDGLLDAGKMEMA 521



 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 152/312 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N+S    +  ++I+   K G +++A ++F K          + Y SL+  LC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L   M R+G  P   TY ++++A C  G + EA + +++M + G  P V   + 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL  +G +E A  + N+M + G   +  + N++I  +C+  +++   ++++ +    
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  +Y ILI  ++KAG ++EA++L   +++ G  P    Y  +I GM      D+A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M+ KG  P+R  + +LI    + G+  EA   L  MT+ G  P    +  +  GL
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 308 KNCGKHDLAEKI 319
            +  + D A  +
Sbjct: 301 CSIARVDDARHL 312



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 140/304 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP T ++II+   K G+++ A ++  K         V+ YN+++  LC+      A  L 
Sbjct: 79  SPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLF 138

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M R G  P++R++  ++   C   K+ +A +   EM  +   P      +L+ GL  A
Sbjct: 139 NEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKA 198

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A ++  +M+  G      T+N +I  +C +  ++  +E++ S+   G      T+
Sbjct: 199 GKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A  K G +DEAFRLL  + +DGH P    Y+ +I G+    + DDA     +M  
Sbjct: 259 NILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P       LI    + GR  EA   L  M   G +P    ++ +  G    G+ + 
Sbjct: 319 RQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER 378

Query: 316 AEKI 319
           A ++
Sbjct: 379 AREL 382



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 5/324 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  ++     +  ++I+   K G ++ A ++F +          + YN ++  +C    
Sbjct: 176 MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L + M  KG  P + T+ IL++A C  GKM EA   L+ M+D G  P V     
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL +   ++ A+ ++  M+K+     + T N+LI  +CK+G ++   E+  ++   G
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSG 355

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY  L+    +AG  + A  LL ++V  G  P    Y  ++ G+ +  +  +A 
Sbjct: 356 QSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEAC 415

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F++MK  G  PN   YT LI      G+         EM   G++P    +  +   L
Sbjct: 416 GVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAEL 475

Query: 308 KNCGKHDLAEKIELL---EVSLRS 328
              G+   A  +E+L     SLRS
Sbjct: 476 CKSGRS--ARALEILREGRESLRS 497



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 124/278 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           ++ + II    +   +D A +VF++  A +       Y  L+  L +    + AY L RR
Sbjct: 151 RSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRR 210

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G  P   TY ++++  C +  + EA E  + M  KG  P     ++L+      G 
Sbjct: 211 MLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGK 270

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A +++ +M   G V D+ T+++LI  +C    V+    +   + K      V T   
Sbjct: 271 MDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNT 330

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + KAG I EA  +L  +V  G  P    Y  ++ G  R GQ + A    S+M  +G
Sbjct: 331 LIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG 390

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             PN   YT L++   +  R  EA     +M   G  P
Sbjct: 391 LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 428



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G V+ A+ +FN+     C      +N+++  LC+      A  +   M
Sbjct: 117 TYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  +Y IL++    +GK+ EA +  + M D G  P     ++++ G+  A  L
Sbjct: 177 EARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTL 236

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   M  +G      TFN LI+  CK G+++    +   +   G   DV TY  L
Sbjct: 237 DEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +     +D+A  LL ++V+   KP       +I G+ + G+  +A      M   G 
Sbjct: 297 ISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQ 356

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+    R G+   A   L +M   GL P    +  +  GL
Sbjct: 357 SPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGL 405



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 4/157 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K   +  A  VF +  +  C   +  Y +L+   C      G   L   M
Sbjct: 397 TYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEM 456

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL---LVQGLLNA 135
           +  G  PD   Y  L    C SG+   A E L+E   +       G ++    V GLL+A
Sbjct: 457 VCAGISPDHVVYGTLAAELCKSGRSARALEILRE-GRESLRSEAWGDEVYRFAVDGLLDA 515

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           G +E A   V  M++ G +   E   SL+  +CKSG+
Sbjct: 516 GKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 15/97 (15%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A   +R M+R G +P     A LV   C SG+  EA+  L+E+ D  +    RG+     
Sbjct: 521 ALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYGGKARGK----- 575

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
                     A + V +M+ +G+ ++      L+ T+
Sbjct: 576 ----------AAKFVEEMVGKGYEIEDGVLKPLLSTL 602


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 145/291 (49%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M+      +P     IIE +G+ G+ + A++ F++   F  +     +N LL  L E
Sbjct: 156 IQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIE 215

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A +L +++   G  P+ RTY IL+ A C S K+  A     +M  +G  P V  
Sbjct: 216 HKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVET 275

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+QGL     +++A  ++++M+ +G+V D  T+N+L+ ++C+   +     +   + 
Sbjct: 276 YSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMK 335

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +G   DV  Y  +I    + G   +A ++L ++ E+G  P    Y  ++ G+   G+FD
Sbjct: 336 VMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFD 395

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +A  F  EM   G  P+  +Y +LIT     G+  EA   LV MT+  L P
Sbjct: 396 EAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAP 446



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 123/263 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++L+  L   + F     LI++M + G       +  ++  +   G   EA +   +M 
Sbjct: 136 YHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQML 195

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P  +  ++L+  L+    LE+A  +  K+ + G   +  T+N LI   C S ++ 
Sbjct: 196 EFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLS 255

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + K G   DV TY IL+  + +   +  A  +L  ++  G+ P    Y  ++
Sbjct: 256 HAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLL 315

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + R+    +A+   S+MK+ G  P+   Y  +IT   R GR ++A   L +M E G  
Sbjct: 316 NSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCL 375

Query: 295 PISRCFDLVTDGLKNCGKHDLAE 317
           P +  +  + +GL N GK D A+
Sbjct: 376 PNALSYRTLVNGLCNEGKFDEAK 398



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 103/227 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +  + +S + +T +++I        + +A  +FNK     C   V  Y+ L+  LC    
Sbjct: 229 LHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQ 288

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M+ KG+VPD  TY  L+N+ C    +REA   L +M   G NP V   + 
Sbjct: 289 VKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNT 348

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G    A Q++  M + G + +  ++ +L+  +C  G+ +   +    +   G
Sbjct: 349 VITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNG 408

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +S Y +LI  +   G + EA  +L  + +    P  S ++ ++
Sbjct: 409 FIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLL 455



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  + +K     C   V+ YN+++   C       A  ++R M   G +P+  +Y  LVN
Sbjct: 327 AYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVN 386

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C+ GK  EA++F++EM   GF P +    LL+ GL N G +  A +++  M KQ    
Sbjct: 387 GLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAP 446

Query: 156 DLETFNSLIETICKSGEVE 174
              T++ L+  IC+  + E
Sbjct: 447 HESTWSVLLMRICEDSQTE 465



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F + G   +A ++        C    L Y +L+  LC    F  A   +  MI  G
Sbjct: 349 VITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNG 408

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F+P    Y +L+   C+ GK+ EA E L  M+ +   P      +L+  +      E A+
Sbjct: 409 FIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQTE-AR 467

Query: 143 QMVNKMIKQGFVLDLET 159
           ++V+K+ +  +    ET
Sbjct: 468 ELVDKLSEDDWRYSWET 484



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 2/206 (0%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF         L+  L  A   ++ + ++ +M K G       F  +IE   + G     
Sbjct: 128 GFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNEA 187

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           ++ ++ + + G       + +L+  + +   ++ A  L   L E G  P    Y  +I+ 
Sbjct: 188 IKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRA 247

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
                +   A+  F++M  +G  P+   Y++L+    R  +   A   L EM   G  P 
Sbjct: 248 HCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPD 307

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELL 322
           +  ++ + + L  C K +L E   LL
Sbjct: 308 ALTYNTLLNSL--CRKMNLREAYRLL 331


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 133/267 (49%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+V  FH A  L   M+R G  PD  TY  L+N  C +G +  A EF  +M 
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G  P       L+ G    G+++ A ++ ++MI+ GF   + T+N+L+   C SG +E
Sbjct: 371 VRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRME 430

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   +   GL  DV +Y  +I    +   +D AF++   +VE G  P    Y+ +I
Sbjct: 431 EAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLI 490

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G+  + + ++A   F EM  K   P+   YT LI    + G   EA N   EM + G  
Sbjct: 491 QGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFL 550

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P +  ++++ +GL    +   A+++ L
Sbjct: 551 PDTVTYNVLINGLNKQARTREAKRLLL 577



 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 149/311 (47%), Gaps = 2/311 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S++  + +++I  F   G ++  +  F +     C   V+ YN+++ A C++K    A+
Sbjct: 199 VSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAF 258

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M  +G  P+  TY +++N  C  G++ E    L EM  KGF P     + LV G 
Sbjct: 259 KLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGY 318

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  + ++M++ G   D+ T+ SLI T+CK+G +   +E +  +   GL  + 
Sbjct: 319 CKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI   S+ G +DEA+R+   ++  G  P    Y  ++ G    G+ ++A      
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG  P+   Y+ +I    R      A     EM E G++P +  +  +  GL  C +
Sbjct: 439 MEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGL--CEQ 496

Query: 313 HDLAEKIELLE 323
             L E  +L +
Sbjct: 497 RRLNEACDLFQ 507



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 120/272 (44%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A +V+ +  A      V  YN L+   C              M R   +P+  TY  ++ 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A+C   ++ EA + L+ M  +G  P +   ++++ GL   G +E    ++ +M ++GF  
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAP 306

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+N+L+   CK G     + ++  + + GL  DV TY  LI  + KAG ++ A    
Sbjct: 307 DGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFF 366

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +   G +P    Y  +I G  ++G  D+A+  + EM   G PP    Y  L+      
Sbjct: 367 DQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVS 426

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           GR  EA   L  M   GL+P    +  +  G 
Sbjct: 427 GRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGF 458



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 133/328 (40%), Gaps = 52/328 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ A+E F++      +   + Y SL+    +      AY +   M
Sbjct: 345 TYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEM 404

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR GF P   TY  L+N  C SG+M EA   L+ M  KG +P V     ++ G      L
Sbjct: 405 IRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQEL 464

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETI------------------------------- 167
           + A QM  +M+++G   D  T++SLI+ +                               
Sbjct: 465 DRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSL 524

Query: 168 ----CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
               CK G++   + ++  + K G   D  TY +LI  ++K     EA RLL  L  D  
Sbjct: 525 INGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDES 584

Query: 224 KP----------------FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
            P                F S+ A +IKG   +G  ++A   F  M  +   PN  VY +
Sbjct: 585 IPNGITYDTLIESCSDIEFKSVVA-LIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNV 643

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +I    R G   +A     EM + G  P
Sbjct: 644 IIHGHCRDGNVHKAHKLYKEMVDFGFIP 671



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 108/237 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y SL+  +C+    + A     +M  +G  P+  TY  L+N +   G M EA     
Sbjct: 343 VVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWD 402

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   GF P +   + L+ G   +G +E A  ++  M  +G   D+ +++++I   C+  
Sbjct: 403 EMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQ 462

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E++   +M   + + G+  D  TY  LI  + +   ++EA  L   ++     P    Y 
Sbjct: 463 ELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYT 522

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            +I G  + G  ++A     EM  KG  P+   Y +LI    +  R  EA   L+++
Sbjct: 523 SLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKL 579



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 24/264 (9%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    + S II  F ++  +D A ++  +          + Y+SL+  LCE + 
Sbjct: 439 MEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRR 498

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  L + M+ K  +PD+ TY  L+N +C  G + EA     EM  KGF P     ++
Sbjct: 499 LNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNV 558

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL        AK+++ K+     + +  T+++LIE+                     
Sbjct: 559 LINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIES--------------------- 597

Query: 188 LCADVSTYKI--LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            C+D+    +  LI      G+++EA ++  ++++   KP  ++Y  II G  R G    
Sbjct: 598 -CSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHK 656

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
           A   + EM   G  P+      L+
Sbjct: 657 AHKLYKEMVDFGFIPHTVTIIALV 680


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  136 bits (342), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 6/291 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G +D A+++F+          V+ YN+L+   C+      A  +++RM
Sbjct: 47  TYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--G 136
           + +  VPD  TY  LVN  C +G++ EA+  +    DKGF+P V     L+ GL     G
Sbjct: 107 VSENLVPDVVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRG 163

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
             E+ K +   ++KQG+  ++ T+N LI+ + K   V    E++  + K GL  D  TY 
Sbjct: 164 VSEALK-LFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYT 222

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           + I  + KAG +++A  +L ++ E G  P    +  +I G+ +  + D+A    S M+ K
Sbjct: 223 VFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAK 282

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           G  PN   +  LI    R G++ +A     EM + G+ P    ++++ DGL
Sbjct: 283 GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 333



 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 134/266 (50%), Gaps = 4/266 (1%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+LL  LC       A AL  RMI+ G+ PD  TY  L++ +C  G++ EA +    
Sbjct: 11  ITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDG 70

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
              +GF P V   + L+ G   A  L+ A++++ +M+ +  V D+ T+NSL+  +CK+G 
Sbjct: 71  AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGR 130

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA-GMIDEAFRLLHNLVEDGHKPFPSLYA 231
           V+   E    +   G   +V TY  LI  + +    + EA +L  ++++ G++P    Y 
Sbjct: 131 VD---EARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYN 187

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ +  + ++AF  FS +   G  P+   YT+ I    + GR  +A   L +M E 
Sbjct: 188 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 247

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAE 317
           G  P     + V +GL    + D AE
Sbjct: 248 GCVPDVVSHNAVINGLCKEKRVDEAE 273



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 131/267 (49%), Gaps = 5/267 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A+++F        +  V  YN L+  L +    + A+ L   +++ G  PD  TY +
Sbjct: 164 VSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 223

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            ++  C +G++ +A   L++M +KG  P V   + ++ GL     ++ A+ +++ M  +G
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA---GMID 209
              +  +FN+LI   C++G+ +  +  +  + K G+   V TY IL+  + KA   G I 
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 343

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  L   ++E G  P    Y+ +I G+ + G+ DDA      M+ KG  PN   Y  LI
Sbjct: 344 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 403

Query: 270 T-MCGRGGRFVEAANYLVEMTEMGLTP 295
           + +CG   +  EA    V M E G  P
Sbjct: 404 SGLCGL-EKVDEALELFVAMVEKGCVP 429



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 6/237 (2%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M + GF P++ TY  L++  C+ G+M +AQ   + M   G++P V   + L+ G    G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A ++ +  +K+GFV D+ T+N+LI   CK+ +++    +   +    L  DV TY  
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR--RGQFDDAFCFFSEMKI 255
           L+  + K G +DEA R+L  +V+ G  P    Y+ +I G+ R  RG   +A   F  +  
Sbjct: 121 LVNGLCKNGRVDEA-RML--IVDKGFSPNVITYSTLISGLCRELRG-VSEALKLFGSVLK 176

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +G+ P  P Y +LI    +  R  EA      + + GL P +  + +  DGL   G+
Sbjct: 177 QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR 233



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 122/255 (47%), Gaps = 3/255 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K   V+ A E+F+       +   + Y   +  LC+      A  +++ M
Sbjct: 185 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 244

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG VPD  ++  ++N  C   ++ EA+  L  M  KG +P     + L+ G   AG  
Sbjct: 245 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 304

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS---GEVEFCVEMYYSVCKLGLCADVSTY 195
           + A     +M+K+G    + T+N L++ +CK+   G ++  + ++ ++ + G   DV TY
Sbjct: 305 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 364

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + KAG +D+A RLL  +   G  P    Y  +I G+    + D+A   F  M  
Sbjct: 365 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVE 424

Query: 256 KGHPPNRPVYTMLIT 270
           KG  P+   Y  +I+
Sbjct: 425 KGCVPDTITYGTIIS 439



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 3/182 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K   VD A  + +   A  C    + +N+L+   C    +  A    + M+++G
Sbjct: 259 VINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 318

Query: 83  FVPDKRTYAILVNAWCSS---GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             P   TY ILV+  C +   G+++EA      M +KG  P V     L+ GL  AG L+
Sbjct: 319 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 378

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A++++  M  +G + ++ T+NSLI  +C   +V+  +E++ ++ + G   D  TY  +I
Sbjct: 379 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438

Query: 200 PA 201
            A
Sbjct: 439 SA 440



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+  GK G +D+A  +     A  C   V  YNSL+  LC ++    A  L   M
Sbjct: 363 TYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAM 422

Query: 79  IRKGFVPDKRTYAILVNA 96
           + KG VPD  TY  +++A
Sbjct: 423 VEKGCVPDTITYGTIISA 440



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 55/132 (41%)

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G   +  TY  L+  +   G + +A  L   +++ G+ P    Y  ++ G  + G+ D
Sbjct: 3   KHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELD 62

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F     +G  P+   Y  LI    +  +  EA   L  M    L P    ++ + 
Sbjct: 63  EALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLV 122

Query: 305 DGLKNCGKHDLA 316
           +GL   G+ D A
Sbjct: 123 NGLCKNGRVDEA 134


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 151/315 (47%), Gaps = 4/315 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G +D A+  F++     C   V+ YN+L+   C+++     +
Sbjct: 201 VSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGF 260

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M  KG  P+  +Y +++N  C  G+M+E    L EM+ +G++      + L++G 
Sbjct: 261 ELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGY 320

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  M  +M++ G    + T+ SLI ++CK+G +    E    +   GLC + 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNE 380

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+   S+ G ++EA+R+L  ++++G  P    Y  +I G    G+  DA     +
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLED 440

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           MK KG  P+   Y+ +++   R     EA     +M   G+ P +  +  +  G   C +
Sbjct: 441 MKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF--CEQ 498

Query: 313 HDLAEKIELLEVSLR 327
               E  +L +  LR
Sbjct: 499 RRTKEACDLFDEMLR 513



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 130/267 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+   FH A  +   M+R G  P   TY  L+++ C +G M  A EFL +M 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMR 372

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G  P  R    LV G    GY+  A +++ +MI  GF   + T+N+LI   C +G++ 
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMV 432

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + + GL  DV +Y  ++    ++  +DEA R+   +V  G KP    Y+ +I
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G   + +  +A   F EM   G PP+   YT LI      G   +A     EM E G+ 
Sbjct: 493 QGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVL 552

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P    + ++ +GL    +   A+++ L
Sbjct: 553 PDVVTYSVLINGLNKQARTREAKRLLL 579



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 133/286 (46%), Gaps = 2/286 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF +         V  YN L+   C       A     RM +KG +P+  TY  L++
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C   K+ +  E L+ M+ KG  P +   ++++ GL   G ++    ++ +M K+G+ L
Sbjct: 249 GYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSL 308

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+N+LI+  CK G     + M+  + + GL   V TY  LI ++ KAG ++ A   L
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFL 368

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +   G  P    Y  ++ G  ++G  ++A+    EM   G  P+   Y  LI      
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIA 428

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           G+ V+A   L +M E GLTP    +  V  G   C  +D+ E + +
Sbjct: 429 GKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGF--CRSYDVDEALRV 472



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 17/304 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L  + +T + +++ F + G ++ A  V  +         V+ YN+L+   C 
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCI 427

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A A++  M  KG  PD  +Y+ +++ +C S  + EA    ++M  KG  P    
Sbjct: 428 AGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTIT 487

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QG       + A  + ++M++ G   D  T+ +LI   C  G+++  ++++  + 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLL---------------HNLVED-GHKPFPS 228
           + G+  DV TY +LI  ++K     EA RLL               H L+E+  +  F S
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + + +IKG   +G   +A   F  M  K H P+   Y ++I    RGG   +A +   EM
Sbjct: 608 VVS-LIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 289 TEMG 292
            + G
Sbjct: 667 VKSG 670



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 127/281 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M     S+   T + +I+ + K G    A+ +  +         V+ Y SL+ ++C+   
Sbjct: 301 MNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGN 360

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A   + +M  +G  P++RTY  LV+ +   G M EA   L+EM D GF+P V   + 
Sbjct: 361 MNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNA 420

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG +  A  ++  M ++G   D+ ++++++   C+S +V+  + +   +   G
Sbjct: 421 LINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG 480

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  TY  LI    +     EA  L   ++  G  P    Y  +I      G    A 
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAI 540

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              +EM  KG  P+   Y++LI    +  R  EA   L+++
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 23/298 (7%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M     S S  T + +I      G + +A+ V            V+ Y+++L  
Sbjct: 400 YRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSG 459

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A  + R+M+ KG  PD  TY+ L+  +C   + +EA +   EM   G  P 
Sbjct: 460 FCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPD 519

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCV 177
                 L+      G L+ A Q+ N+M+++G + D+ T++ LI  + K           +
Sbjct: 520 EFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLL 579

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSK---------------AGMIDEAFRLLHNLVEDG 222
           +++Y   +  + +DV TY  LI   S                 GM+ EA ++  +++E  
Sbjct: 580 KLFY---EESVPSDV-TYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKN 635

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           HKP  + Y  +I G  R G    A+  + EM   G   +      L+    + G+  E
Sbjct: 636 HKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNE 693



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 1/170 (0%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYYSVC 184
           DL+V+       ++ A  +V+     GF+  + ++N++++   +S   + F   ++  + 
Sbjct: 138 DLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEML 197

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +  +V TY ILI     AG +D A R    + + G  P    Y  +I G  +  + D
Sbjct: 198 QSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKID 257

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           D F     M +KG  PN   Y ++I    R GR  E +  L EM + G +
Sbjct: 258 DGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYS 307



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 15/222 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G +  A+++ N+         V+ Y+ L+  L +      A  L+ ++
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581

Query: 79  IRKGFVPDKRTYAILV---------------NAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             +  VP   TY  L+                 +C  G M EA +  + M +K   P   
Sbjct: 582 FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGT 641

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++++ G    G +  A  +  +M+K GF+L   T  +L++T+ K G+V     +  +V
Sbjct: 642 AYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANV 701

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +    ++    K+L+    + G +D    +L  + +DG  P
Sbjct: 702 LRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLP 743


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 151/333 (45%), Gaps = 35/333 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V  AV VFNK   F+       Y SL+   C  +    A+ +  RM
Sbjct: 199 TFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRM 258

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-------------------- 118
           ++ G  P+  TY+ L+N  C+ G++ EA + L+EM++KG                     
Sbjct: 259 VKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318

Query: 119 ---------------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                          +P V+    ++ GL  AG +E A  M +KM+K+G V +  T+N+L
Sbjct: 319 DDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNAL 378

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C  G     ++++  +   G  A+  TY  +I  +     I++A  + + +++DG 
Sbjct: 379 INELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGP 438

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I    +RG  ++A  F   MK     P+   Y  LI+   +GG+   A +
Sbjct: 439 SPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATS 498

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  EM + G++P    +  + DG    GK D+A
Sbjct: 499 FFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVA 531



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 132/300 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I      G +  A+++  + T    +  V  Y   + +LC++     A  L+R M
Sbjct: 269 TYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSM 328

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  P  +TY  +++    +GKM  A     +M  +G  P     + L+  L   G  
Sbjct: 329 GKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRF 388

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ + M   G + + +T+N +I+ +    ++E  + ++  + K G    V TY  L
Sbjct: 389 GIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTL 448

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G ++ A R L+ + E   +P    Y  +I G  + G+ D A  FF EM   G 
Sbjct: 449 IVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGI 508

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN+  YT +I    + G+   A +    M E G +     ++ +  GL    +   AEK
Sbjct: 509 SPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEK 568



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 12/297 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M+ +    + QT + II+       ++ A+ VFNK         V+ YN+L+   
Sbjct: 393 KIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVEN 452

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +    + A   +  M      PD+RTY  L++ +C  GK+  A  F  EM   G +P  
Sbjct: 453 LKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQ 512

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----SGEVEFCVE 178
                ++ G    G ++ A  +  +M + G    +ET+N++I  + K    S   +FC +
Sbjct: 513 WTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAK 572

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           M     + GL  +  TY  LI  + K    + AF++ H + +    P    Y  +I G+ 
Sbjct: 573 M----TEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLC 628

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + G+ D A      +   G  P    Y+ L++   R GR  EA+  +  M E GL+P
Sbjct: 629 QEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSP 681



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 130/302 (43%), Gaps = 6/302 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E    G    A+++F+             YN ++  L  +     A  +  +M
Sbjct: 374 TYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKM 433

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P   TY  L+      G +  A  FL  M +    P  R    L+ G    G L
Sbjct: 434 LKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKL 493

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA     +M+K G   +  T+ ++I+  CK G+++  + ++  + + G  A + TY  +
Sbjct: 494 DSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAI 553

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK     EA +    + E G +P    Y  +I G+ +    + AF  F EM+ K  
Sbjct: 554 ISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNC 613

Query: 259 PPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PN   YT LI  +C  G   V+AA  L   TE G  P    +  +  GL   G+ + A 
Sbjct: 614 LPNAHTYTSLIYGLCQEGK--VDAAERL---TENGCEPTIDTYSTLVSGLCREGRSNEAS 668

Query: 318 KI 319
           ++
Sbjct: 669 QL 670



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 136/333 (40%), Gaps = 35/333 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + ++ + GK  +V +A  V+ +  +   +  +L +N+++  LC+      A  +  ++
Sbjct: 164 SFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKI 223

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD  TY  L+   C + K+ +A E    M   G NP       L+ GL N G +
Sbjct: 224 FQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRI 283

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M+ +M ++G    + T+   I ++C  G V+  + +  S+ K G    V TY  +
Sbjct: 284 GEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAI 343

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKP----FPSL------------------------- 229
           I  + +AG ++ A  + H ++++G  P    + +L                         
Sbjct: 344 ISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGT 403

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  IIKG+F     + A   F++M   G  P    Y  LI    + G    A  
Sbjct: 404 LANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATR 463

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +L  M E    P  R +  +  G    GK D A
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSA 496



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 118/248 (47%), Gaps = 4/248 (1%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS--DKG-FNPPVRGRDLL 128
           +++ R+++ K   P      +++ A  +  +++   +FL  +S  D G F   +   + L
Sbjct: 109 SMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTL 168

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +  L     + SA+ +  ++   G    L TFN++I  +CK G+V+  V ++  + +  L
Sbjct: 169 LLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDL 228

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           C D  TY  LI    +   +D+AF +   +V+DG  P    Y+ +I G+   G+  +A  
Sbjct: 229 CPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMD 288

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
              EM  KG  P    YT+ I+     GR  +A N +  M + G +P  + +  +  GL 
Sbjct: 289 MLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLF 348

Query: 309 NCGKHDLA 316
             GK +LA
Sbjct: 349 RAGKMELA 356



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 119/274 (43%), Gaps = 4/274 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+    S S +T + II    K      A +   K T    Q   + Y SL+  LC+ 
Sbjct: 536 ERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKN 595

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A+ +   M +K  +P+  TY  L+   C  GK+  A+     +++ G  P +   
Sbjct: 596 TATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER----LTENGCEPTIDTY 651

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             LV GL   G    A Q+V  M ++G    +E + SL+   CKS +V+  +E++  +  
Sbjct: 652 STLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAV 711

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G    +  YK+LI A+      +EA  +  +L++        ++  ++ G+ + G  D 
Sbjct: 712 KGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDL 771

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
              F   M+ +   P+   Y +L     + G+ +
Sbjct: 772 CMKFLYLMESRNCTPSLHTYIILARELSKVGKSI 805



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%)

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           AQ    ++   G  P +   + ++  L   G ++ A  + NK+ +     D  T+ SLI 
Sbjct: 181 AQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLIL 240

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C++ +++   E++  + K G   +  TY  LI  +   G I EA  +L  + E G +P
Sbjct: 241 GHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEP 300

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y   I  +   G+ DDA      M  KG  P+   YT +I+   R G+   A    
Sbjct: 301 TVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMY 360

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +M + GL P +  ++ + + L   G+  +A KI
Sbjct: 361 HKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K    M+  N   +  T + +I    + G VD A     + T   C+  +  Y++L+  
Sbjct: 602 FKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSG 657

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC     + A  L+  M  KG  P    Y  L+ A C S K+  A E    M+ KGF P 
Sbjct: 658 LCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPH 717

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +    +L+  L      E A  +   ++K+ +  DL  +  L++ + + G+ + C++  Y
Sbjct: 718 LFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLY 777

Query: 182 SVCKLGLCADVSTYKILIPAVSKAG 206
            +        + TY IL   +SK G
Sbjct: 778 LMESRNCTPSLHTYIILARELSKVG 802



 Score = 43.9 bits (102), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 61/144 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   LS S +    ++    K   VD A+E+FN       Q  + +Y  L+ ALC 
Sbjct: 671 VENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCG 730

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A  + + +++K +  D   + +LV+     G      +FL  M  +   P +  
Sbjct: 731 VSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHT 790

Query: 125 RDLLVQGLLNAGYLESAKQMVNKM 148
             +L + L   G      Q+ N++
Sbjct: 791 YIILARELSKVGKSIGTDQIGNRL 814


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 148/302 (49%), Gaps = 2/302 (0%)

Query: 21   SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
            S +++   + G +  A+E F +         V  YNSL+  L    L+      +  M+ 
Sbjct: 1124 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 1183

Query: 81   KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            +GF PD  T+ IL++  C  GK+ EAQ+ L+ M  KG  P +   + L+ GL   G LE 
Sbjct: 1184 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLED 1243

Query: 141  AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
            A ++   +  +G  L++ ++N LI   CK  +++     +  +   GL     TY  LI 
Sbjct: 1244 ATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIG 1303

Query: 201  AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            A+ ++G +  A +L   +   G     S Y  ++ G+ + G  ++A   F  +K   H P
Sbjct: 1304 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKP 1363

Query: 261  NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
            N  V+++L+    R G+  EA     E+++ GL P +  ++++ +GL  C K  L+E ++
Sbjct: 1364 NIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGL--CNKGMLSEAVK 1421

Query: 321  LL 322
            LL
Sbjct: 1422 LL 1423



 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 134/277 (48%), Gaps = 2/277 (0%)

Query: 47   NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
            NC+  V  Y  ++ ALC+  +   A  +   MI  G +PD   Y+ L++  C  G+++EA
Sbjct: 1080 NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEA 1139

Query: 107  QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
             EF +EM  +G +  V   + L+ GL  AG  +     +N M+ +GF  D  TF  LI+ 
Sbjct: 1140 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 1199

Query: 167  ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            +CK G+V    ++   +   G   D+ TY  L+  +   G +++A +L  +L + G K  
Sbjct: 1200 LCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLN 1259

Query: 227  PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
               Y  +I G  +  + D+AF FF EM+ KG  P+   Y  LI    + GR   A    V
Sbjct: 1260 VFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFV 1319

Query: 287  EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM   G       + ++ DGL  C    L E ++L +
Sbjct: 1320 EMQTCGQFLKLSTYCVLLDGL--CKNGHLEEAMDLFQ 1354



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 1    MWKTI----ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
            +WK +     LM     S    T +++I+   K G V  A ++         +  +L YN
Sbjct: 1170 LWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYN 1229

Query: 57   SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            +L+  LC V     A  L   +  +G   +  +Y IL+N +C   K+ EA  F +EM  K
Sbjct: 1230 TLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPK 1289

Query: 117  GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
            G  P     + L+  L  +G + +A+++  +M   G  L L T+  L++ +CK+G +E  
Sbjct: 1290 GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEA 1349

Query: 177  VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            ++++ S+ K     ++  + IL+  + +AG ++EA++    + ++G +P    Y  +I G
Sbjct: 1350 MDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILING 1409

Query: 237  MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +  +G   +A     +M+ KG  P+   + ++I    +     EA   L EM     +P
Sbjct: 1410 LCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 1468



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 143/295 (48%), Gaps = 9/295 (3%)

Query: 33   VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
            +++A+++F++        C   +N LL ++ ++  +   + + R++   G  PD  T  I
Sbjct: 927  LNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNI 986

Query: 93   LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            L++  CS   +            +GF P       LV+G+     +  A Q+ ++M K+G
Sbjct: 987  LIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKG 1046

Query: 153  FVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTYKILIPAVSKAGMID 209
             + D +T+  LI  +CK+ +    ++++  +   CK     DV TY ++I A+ K GM  
Sbjct: 1047 LLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCK----GDVFTYGMIIDALCKDGMTT 1102

Query: 210  EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            EA  +   ++  G  P   +Y+ ++ G+ R G+  +A  FF EM+ +G   +   Y  LI
Sbjct: 1103 EALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLI 1162

Query: 270  TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
                R G + E   +L  M + G +P +  F ++ DGL  C +  + E  ++LE+
Sbjct: 1163 HGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGL--CKEGKVGEAQQILEL 1215



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 2/270 (0%)

Query: 31   GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
            G +++A ++F        +  V  YN L+   C+ +    A+     M  KG  P   TY
Sbjct: 1239 GQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTY 1298

Query: 91   AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
              L+ A C SG++R AQ+   EM   G    +    +L+ GL   G+LE A  +   + K
Sbjct: 1299 NTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKK 1358

Query: 151  QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                 ++E F+ L++ +C++G++E   + +  + K GL  D   Y ILI  +   GM+ E
Sbjct: 1359 TEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSE 1418

Query: 211  AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            A +LL  + E G  P    +  II+ + +  +  +A     EM+ +   P+  V +ML+ 
Sbjct: 1419 AVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLC 1478

Query: 271  MCGRGGRFVEAANYLVEMTEMGL--TPISR 298
            +     ++  A   L    + G+   P+ R
Sbjct: 1479 LASFDPQWHAALVSLPNALQKGVGSVPVKR 1508



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 3/302 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + ++    K G       ++ K      Q  +   N L+   C ++     + +    
Sbjct: 948  TFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGF 1007

Query: 79   IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +++GF PD  T   LV   W  +G + +A +   EM+ KG     +   +L+ GL  A  
Sbjct: 1008 LKRGFEPDAVTVTTLVKGVWMENG-IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARK 1066

Query: 138  LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
               A ++  KM K     D+ T+  +I+ +CK G     ++M+  +   G+  DV  Y  
Sbjct: 1067 TGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSS 1125

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            L+  + + G + EA      +   G       Y  +I G+ R G + +   F + M  +G
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 258  HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              P+   +T+LI    + G+  EA   L  M   G  P    ++ + +GL   G+ + A 
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 318  KI 319
            K+
Sbjct: 1246 KL 1247



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 101/224 (45%), Gaps = 4/224 (1%)

Query: 6    ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL--YNSLLFALC 63
            E M+P  L  S  T + +I    + G V  A ++F +     C Q + L  Y  LL  LC
Sbjct: 1284 EEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT--CGQFLKLSTYCVLLDGLC 1341

Query: 64   EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            +      A  L + + +    P+   ++IL++  C +GK+ EA +   E+S  G  P   
Sbjct: 1342 KNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 1401

Query: 124  GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
              ++L+ GL N G L  A +++ +M ++G + D  TFN +I+ + K  E+   +++   +
Sbjct: 1402 AYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEM 1461

Query: 184  CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
                   D +   +L+   S       A   L N ++ G    P
Sbjct: 1462 RNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGVGSVP 1505


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G +   +  F +     C   V+ YN+L+ A C++     A+
Sbjct: 210 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 269

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M  KG  P+  +Y +++N  C  G M+EA E L+EM  KGF P     + L+ G 
Sbjct: 270 GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 329

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  +  +M++ G    + T+ +LI ++CK+  +   +E +  +   GL  + 
Sbjct: 330 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 389

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI   S+ G+++EA+R+L+ + E G  P    Y   I G     + ++A     E
Sbjct: 390 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQE 449

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y+ +I+   R G    A     EM E G++P +  +  +  GL  C  
Sbjct: 450 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL--CEM 507

Query: 313 HDLAEKIEL 321
             L E  +L
Sbjct: 508 RRLTEACDL 516



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + +T + +I+ F + GL++ A  + N+ T       V+ YN+ +   C ++ 
Sbjct: 380 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 439

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M+ KG  PD  +Y+ +++ +C  G++  A +  QEM +KG +P       
Sbjct: 440 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+QGL     L  A  +  +M+  G   D  T+ +LI   C  G++   + ++  +   G
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 559

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPSLYA 231
              D  TY +LI  ++K     EA RLL  L+ +   P                F S+ A
Sbjct: 560 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 619

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +IKG   +G   +A   F  M  + H P   VY ++I    RGG   +A N   EM   
Sbjct: 620 -LIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 678

Query: 292 GLTP 295
           G  P
Sbjct: 679 GFVP 682



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++II    + G +  A E+  +          + YN+LL   C+   FH A  +   M
Sbjct: 286 SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 345

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  P   TY  L+N+ C +  +  A EF  +M  +G  P  R    L+ G    G L
Sbjct: 346 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 405

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++N+M + GF   + T+N+ I   C    +E  + +   + + GL  DV +Y  +
Sbjct: 406 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 465

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G +D AF++   +VE G  P    Y+ +I+G+    +  +A     EM   G 
Sbjct: 466 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 525

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   YT LI      G   +A +   EM   G  P +  + ++ +GL    +   A++
Sbjct: 526 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 585

Query: 319 I 319
           +
Sbjct: 586 L 586



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 128/284 (45%), Gaps = 6/284 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC----EVKLFHGA 71
           S     L+++ +    ++D AV   N   +      VL YNS+L A+      VKL   A
Sbjct: 141 SSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL--SA 198

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + R MIR    P+  TY IL+  +CS G++++      EM   G  P V   + L+  
Sbjct: 199 EEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDA 258

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A  ++  M  +G   +L ++N +I  +C+ G ++   E+   +   G   D
Sbjct: 259 YCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 318

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  L+    K G   +A  +   +V +G  P    Y  +I  M +    + A  FF 
Sbjct: 319 EVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFD 378

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +M+I+G  PN   YT LI    R G   EA   L EMTE G +P
Sbjct: 379 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 127/282 (45%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A EV+ +         V  YN L+   C V            M R G +P+  TY  L+
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +A+C  G++ EA   L+ MS KG  P +   ++++ GL   G ++ A +++ +M  +GF 
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFT 316

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D  T+N+L+   CK G     + ++  + + G+   V TY  LI ++ KA  ++ A   
Sbjct: 317 PDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEF 376

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +   G +P    Y  +I G  R+G  ++A+   +EM   G  P+   Y   I     
Sbjct: 377 FDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCV 436

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             R  EA   + EM E GL P    +  +  G    G+ D A
Sbjct: 437 LERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRA 478



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ +E M     +    T + ++  + K G    A+ +  +         V+ Y +L+ +
Sbjct: 304 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 363

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +C+ +  + A     +M  +G  P++RTY  L++ +   G + EA   L EM++ GF+P 
Sbjct: 364 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   +  + G      +E A  +V +M+++G   D+ +++++I   C+ GE++   +M  
Sbjct: 424 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 483

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  TY  LI  + +   + EA  L   +++ G  P    Y  +I      G
Sbjct: 484 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 543

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             + A     EM  KG  P+   Y++LI    +  R  EA   L ++      P    +D
Sbjct: 544 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 603

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            +   ++NC   +    + L++
Sbjct: 604 TL---IENCSNIEFKSVVALIK 622



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 130/289 (44%), Gaps = 10/289 (3%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           + ++  V+N  +A        +++ ++ +   + +   A   I      GF+P   +Y  
Sbjct: 131 LKDSYHVYNSSSA--------VFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNS 182

Query: 93  LVNAWCSS-GKMR-EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +++A   S G ++  A+E  +EM     +P V   ++L++G  + G L+       +M +
Sbjct: 183 VLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMER 242

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G + ++ T+N+LI+  CK G ++    +  S+   G+  ++ +Y ++I  + + G + E
Sbjct: 243 NGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKE 302

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ +L  +   G  P    Y  ++ G  + G F  A    +EM   G  P+   YT LI 
Sbjct: 303 AWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALIN 362

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +      A  +  +M   GL P  R +  + DG    G  + A +I
Sbjct: 363 SMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 50/221 (22%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA------------------ 96
           Y +L+ A C     + A  L   MI KGF+PD  TY++L+N                   
Sbjct: 532 YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 591

Query: 97  --------------------------------WCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                                           +C  G M EA    + M ++   P    
Sbjct: 592 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAV 651

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ G    G L  A  +  +MI  GFV    T  +LI+ + K G  E   E+     
Sbjct: 652 YNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 711

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +     +    K+L+    K G ++    +L ++ +DG  P
Sbjct: 712 RSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLP 752


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 132/258 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+   KHG +D A E+ ++      Q  V +YNS++  +C+      A  L++ M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  +++A+C  G + +A + LQEM D+G  P V   ++L+ G    G L
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   +++  M+++G V D  T+N+L++  C    +    ++Y  +   G+  D +TY IL
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   ++E G+ P  + Y  +IK  +++ +F +A   F EM+  G 
Sbjct: 650 IKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGL 709

Query: 259 PPNRPVYTMLITMCGRGG 276
             +  +Y   + MC   G
Sbjct: 710 VADGEIYNFFVDMCYEEG 727



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 139/289 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I+ +   G +  A+++ +       +     YNS++  LC++     A  ++R M
Sbjct: 295 SYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD   Y  L++ +   G +R A ++  EM  K  +P       L+QG    G +
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + + ++MI +G   D  T+ +LI+  CK+GE+     ++  + ++G+  ++ TY  L
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D A  LL  + + G +    +Y  ++ G+ + G  + A     EM++ G 
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   YT +I    R G   +A   L EM + GL P    F+++ +G 
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 2/325 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I++   Y +S +  + ++II    + G V  A  +  +    +    V+ Y++++   C 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+  M  KG  P++ TY  ++   C  GK  EA++ L+EM  +   P    
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G++ +A +  ++M+ +    D  T+ +LI+   + G+V     +++ + 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  D  TY  LI    KAG +  AF L + +V+ G  P    Y  +I G+ + G+ D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     EM+ KG   N  +Y  ++    + G   +A   + EM   G+ P +  +  V 
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 305 DGLKNCGKHDLAEKI--ELLEVSLR 327
           D     G  D A K+  E+L+  L+
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 133/289 (46%), Gaps = 2/289 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I+ FG+ G V     +F++  +   +   + Y +L+   C+      A+
Sbjct: 394 ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAF 453

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L   M++ G  P+  TY  L++  C  G++  A E L EM  KG    V   + +V G+
Sbjct: 454 SLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGI 513

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +E A +++ +M   G   D  T+ ++I+  C+ G+++   ++   +   GL   V
Sbjct: 514 CKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTV 573

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+ +L+      GM+++  RLL  ++E G  P    Y  ++K    R   +     +  
Sbjct: 574 VTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR 633

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           M+ +G  P+   Y +LI    +     EA     EM E G  P    ++
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y +L+    ++     A      M+ K   PD  TY  L+  +   GK+ E Q    E
Sbjct: 364 VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G  P       L+     AG + +A  + N+M++ G   ++ T+ +LI+ +CK GE
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++   E+   + K GL  +V  Y  ++  + KAG I++A +L+  +   G  P    Y  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I    R G  D A     EM  +G  P    + +L+      G   +    L  M E G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 293 LTP 295
           + P
Sbjct: 604 IVP 606



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 3/221 (1%)

Query: 3   KTIELMKPYNLS-VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + I+LMK   ++ + P   T + +I+ + + G +D A ++  +      Q  V+ +N L+
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C + +      L+  M+ KG VPD  TY  L+   C    M    +  + M ++G  
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++L++G   A  L+ A  +  +MI++G+V  + ++N+LI+   K  +     E+
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEAREL 700

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +  +   GL AD   Y   +    + G ++    L    +E
Sbjct: 701 FEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIE 741



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 37/260 (14%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K + P+   + I        G + EA++ L ++   G    V   +  +  + N    E 
Sbjct: 184 KYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNS--EG 241

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
            +  +    + G   +  ++N +I ++C+ G+V+    +   +       DV +Y  +I 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKP---------------------------------FP 227
                G + +A +L+ ++   G KP                                  P
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP 361

Query: 228 S--LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y  +I G F+ G    A  +F EM  K   P+   YT LI   G+GG+ +E  N  
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421

Query: 286 VEMTEMGLTPISRCFDLVTD 305
            EM   GL P    +  + D
Sbjct: 422 HEMISRGLKPDEVTYTTLID 441


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 141/316 (44%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K  N+ +SP T    ++     G +D A  +  +  A  C+  V++Y +L+    +   
Sbjct: 411 IKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSR 470

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +++ M  +G  PD   Y  L+     + KM EA+ FL EM + GF P       
Sbjct: 471 FGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGA 530

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + G + AG   SA + V +M++ G + +      LI   CK G+V      + S+ + G
Sbjct: 531 FISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQG 590

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  TY +L+  + K G +++A  + H +   G  P    Y  +I G  + G    A 
Sbjct: 591 ILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKAS 650

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM   G   N  +Y ML+    R G   +A   L EM+  G  P +  +  + DG 
Sbjct: 651 SIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGY 710

Query: 308 KNCGKHDLAEKIELLE 323
             C   DLAE  +L +
Sbjct: 711 --CKSGDLAEAFQLFD 724



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 127/262 (48%), Gaps = 1/262 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y + +    E   F  A   ++ M+  G +P+K     L+N +C  GK+ EA    + M 
Sbjct: 528 YGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMV 587

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G     +   +L+ GL+  G +  A+++ ++M  +G   D+ ++ +LI+   K G ++
Sbjct: 588 EQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQ 647

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + + GL ++V  Y +L+    ++G I++A  LL  +   G  P    Y  II
Sbjct: 648 KASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTII 707

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G   +AF  F EMK+KG  P+  VYT L+  C R    VE A  + E  E G  
Sbjct: 708 DGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLND-VERAITIFETNEKGCA 766

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
             S  F+ + + +   GK +L 
Sbjct: 767 SSSAPFNALINWVFKFGKTELT 788



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 2/255 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L + M  KG VP +++Y +L++  C   ++ +A+  L EM+  G         +L+ 
Sbjct: 264 ALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILID 323

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GLL     ++A  +V++M+  GF +D   ++  I  + K G +E    ++  +   G+  
Sbjct: 324 GLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTP 383

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
               Y  LI    +   + + + LL  + +      P  Y   +KGM   G  D A+   
Sbjct: 384 GARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIV 443

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM   G  PN  +YT LI    +  RF +A   L EM E G+ P + C++ +  GL   
Sbjct: 444 KEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKA 503

Query: 311 GKHDLAEK--IELLE 323
            K D A    +E++E
Sbjct: 504 KKMDEARSFLLEMVE 518



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 16/318 (5%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P   S   +I+ F K G +  A  +F++         V++YN LL   C       A 
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KGF P+  TY  +++ +C SG + EA +   EM  KG  P       LV G 
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY-----SVCKLG 187
                +E A  +  +  ++G       FN+LI  + K G+ E   +M       S  K G
Sbjct: 746 CRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFG 804

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY I+I  + K G ++ A  L H++ +    P    Y  ++ G  + G+  + F
Sbjct: 805 KPNDV-TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMF 863

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT------PISRCFD 301
             F E+   G  P+  +Y+++I    + G   +A   L +M             IS C  
Sbjct: 864 SVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRA 923

Query: 302 LVTDGLKNCGKHDLAEKI 319
           L++ G    G+ ++AEK+
Sbjct: 924 LLS-GFAKVGEMEVAEKV 940



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 3/315 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           N+ ++   L    EE G   L VD A+E+    +          YN L+  LC+ K    
Sbjct: 239 NVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLED 298

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L+  M   G   D   Y+IL++          A   + EM   GF+      D  + 
Sbjct: 299 AKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFIC 358

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            +   G +E AK + + MI  G       + SLIE   +   V    E+   + K  +  
Sbjct: 359 VMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVI 418

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY   +  +  +G +D A+ ++  +   G +P   +Y  +IK   ++ +F DA    
Sbjct: 419 SPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVL 478

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+ +G  P+   Y  LI    +  +  EA ++L+EM E G  P +  +     G    
Sbjct: 479 KEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEA 538

Query: 311 GKHDLAEKI--ELLE 323
           G+   A+K   E+LE
Sbjct: 539 GEFASADKYVKEMLE 553



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 124/312 (39%), Gaps = 35/312 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  +  S+ P      I    K G ++ A  +F+    F        Y SL+      K 
Sbjct: 341 MVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFFREKN 400

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               Y L+  + ++  V    TY   V   CSSG +  A   ++EM   G  P V     
Sbjct: 401 VRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTT 460

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++  L       A +++ +M +QG   D   +NSLI                     +G
Sbjct: 461 LIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLI---------------------IG 499

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L              SKA  +DEA   L  +VE+G KP    Y   I G    G+F  A 
Sbjct: 500 L--------------SKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASAD 545

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  EM   G  PN+ + T LI    + G+ +EA +    M E G+   ++ + ++ +GL
Sbjct: 546 KYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGL 605

Query: 308 KNCGKHDLAEKI 319
              GK + AE+I
Sbjct: 606 VKNGKVNDAEEI 617



 Score = 41.6 bits (96), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 18/215 (8%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF----VPDKR 88
           V+ A+ +F +     C      +N+L+  + +         +I R++   F     P+  
Sbjct: 751 VERAITIF-ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDV 809

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY I+++  C  G +  A+E    M      P V     L+ G    G       + +++
Sbjct: 810 TYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEV 869

Query: 149 IKQGFVLDLETFNSLIETICKSG---------EVEFCVEMYYSVCKLGLCADVSTYKILI 199
           I  G   D   ++ +I    K G         +  F        CKL     +ST + L+
Sbjct: 870 IAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLS----ISTCRALL 925

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +K G ++ A +++ N+V   + P  S    +I
Sbjct: 926 SGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELI 960



 Score = 38.1 bits (87), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFN-----CQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S+II  F K G+   A+ + ++  A N     C+  +    +LL    +V     A  ++
Sbjct: 882 SVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVV 941

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
             M+R  ++PD  T   L+N  C S   R A +
Sbjct: 942 ENMVRLKYIPDSSTVIELINESCISSNQRMAAD 974


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 4/309 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I  F   G +   +  F +     C   V+ YN+L+ A C++     A+
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAF 65

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M  KG  P+  +Y +++N  C  G M+EA E L+EM  KGF P     + L+ G 
Sbjct: 66  GLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGY 125

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  +  +M++ G    + T+ +LI ++CK+  +   +E +  +   GL  + 
Sbjct: 126 CKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNE 185

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI   S+ G+++EA+R+L+ + E G  P    Y   I G     + ++A     E
Sbjct: 186 RTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQE 245

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y+ +I+   R G    A     EM E G++P +  +  +  GL  C  
Sbjct: 246 MVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL--CEM 303

Query: 313 HDLAEKIEL 321
             L E  +L
Sbjct: 304 RRLTEACDL 312



 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 138/304 (45%), Gaps = 17/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + +T + +I+ F + GL++ A  + N+ T       V+ YN+ +   C ++ 
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M+ KG  PD  +Y+ +++ +C  G++  A +  QEM +KG +P       
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+QGL     L  A  +  +M+  G   D  T+ +LI   C  G++   + ++  +   G
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG 355

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPSLYA 231
              D  TY +LI  ++K     EA RLL  L+ +   P                F S+ A
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 415

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +IKG   +G   +A   F  M  + H P   VY ++I    RGG   +A N   EM   
Sbjct: 416 -LIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 474

Query: 292 GLTP 295
           G  P
Sbjct: 475 GFVP 478



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++II    + G +  A E+  +          + YN+LL   C+   FH A  +   M
Sbjct: 82  SYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEM 141

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  P   TY  L+N+ C +  +  A EF  +M  +G  P  R    L+ G    G L
Sbjct: 142 VRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLL 201

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++N+M + GF   + T+N+ I   C    +E  + +   + + GL  DV +Y  +
Sbjct: 202 NEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTI 261

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G +D AF++   +VE G  P    Y+ +I+G+    +  +A     EM   G 
Sbjct: 262 ISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGL 321

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   YT LI      G   +A +   EM   G  P +  + ++ +GL    +   A++
Sbjct: 322 PPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKR 381

Query: 319 I 319
           +
Sbjct: 382 L 382



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ +E M     +    T + ++  + K G    A+ +  +         V+ Y +L+ +
Sbjct: 100 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +C+ +  + A     +M  +G  P++RTY  L++ +   G + EA   L EM++ GF+P 
Sbjct: 160 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 219

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   +  + G      +E A  +V +M+++G   D+ +++++I   C+ GE++   +M  
Sbjct: 220 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 279

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  TY  LI  + +   + EA  L   +++ G  P    Y  +I      G
Sbjct: 280 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 339

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             + A     EM  KG  P+   Y++LI    +  R  EA   L ++      P    +D
Sbjct: 340 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 399

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            +   ++NC   +    + L++
Sbjct: 400 TL---IENCSNIEFKSVVALIK 418



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 100/218 (45%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MIR    P+  TY IL+  +CS G++++      EM   G  P V   + L+      G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A  ++  M  +G   +L ++N +I  +C+ G ++   E+   +   G   D  TY  
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    K G   +A  +   +V +G  P    Y  +I  M +    + A  FF +M+I+G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             PN   YT LI    R G   EA   L EMTE G +P
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218



 Score = 46.2 bits (108), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 71/205 (34%), Gaps = 50/205 (24%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA------------------ 96
           Y +L+ A C     + A  L   MI KGF+PD  TY++L+N                   
Sbjct: 328 YTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLI 387

Query: 97  --------------------------------WCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                                           +C  G M EA    + M ++   P    
Sbjct: 388 YEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAV 447

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ G    G L  A  +  +MI  GFV    T  +LI+ + K G  E   E+     
Sbjct: 448 YNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTL 507

Query: 185 KLGLCADVSTYKILIPAVSKAGMID 209
           +     +    K+L+    K G ++
Sbjct: 508 RSCRLNEAELAKVLVEINHKEGNME 532



 Score = 44.3 bits (103), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 55/132 (41%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C   L H A  +   M+ +   P +  Y ++++  C  G + +A    +EM   
Sbjct: 415 ALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHS 474

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P       L++ L   G  E   +++   ++   + + E    L+E   K G +E  
Sbjct: 475 GFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAV 534

Query: 177 VEMYYSVCKLGL 188
           + +     KL L
Sbjct: 535 LNVSRLYNKLSL 546


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  135 bits (340), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 163/317 (51%), Gaps = 3/317 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I  F   G +++A+++FNK    N +  V  +N L+ A C+        
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+++G  P+  TY  L++ +C   ++ +A+     M+  G NP ++   +++ G 
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                 + A  +  +M ++  + D+ T++SLI+ + KSG + + +++   +   G+   +
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTI 435

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K   +D+A  LL  L + G +P    Y+ +IKG+ + G+ +DA   F  
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEG 495

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KGH  N   YT++I      G F EA   L +M + G  P ++ ++++   L    +
Sbjct: 496 LLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555

Query: 313 HDLAEKIELLEVSLRSV 329
           +D+AEK+ L E+  R V
Sbjct: 556 NDMAEKL-LREMIARGV 571



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++  +      Q  V++YN+++ ++C+VKL + A+ L   MI KG
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L++ +C  GK+ +A +   +M  +   P V   ++LV      G ++  K
Sbjct: 256 ISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M+KQG   +  T+NSL++  C   EV     ++ ++ + G+  D+ +Y I+I   
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   +      P    Y+ +I G+ + G+   A     +M  +G PP  
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTI 435

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  ++    +  +  +A   L ++ + G+ P    + ++  GL   GK + A K+
Sbjct: 436 RTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKV 492



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 137/284 (48%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T ++++  F K G +     VF+       +   + YNSL+   C VK  + A
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA 349

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++   M + G  PD ++Y+I++N +C   K  EA    +EM  K   P V     L+ G
Sbjct: 350 KSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A Q+V++M  +G    + T+NS+++ +CK  +V+  + +   +   G+  +
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPN 469

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY ILI  + ++G +++A ++   L+  GH      Y  +I+G    G F++A    S
Sbjct: 470 MYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLS 529

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +M+  G  P+   Y ++I    +      A   L EM   G+ P
Sbjct: 530 KMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G +  A    +K  A       + Y +L+  LC+V     A  L++R+
Sbjct: 157 TFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRV 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P+   Y  ++++ C    + EA +   EM  KG +P V     L+ G    G L
Sbjct: 217 DGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + NKMI +    D+ TFN L+   CK G+++    ++  + K G+  +  TY  L
Sbjct: 277 NDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSL 336

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +++A  + + + + G  P    Y+ +I G  +  +FD+A   F EM  K  
Sbjct: 337 MDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ LI    + GR   A   + +M + G+ P  R ++ + D L  C  H + + 
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL--CKIHQVDKA 454

Query: 319 IELL 322
           I LL
Sbjct: 455 IALL 458



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 130/280 (46%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F  +  VD+AV +FN+    N       +N +L +L + K +H    L ++M  +G  P+
Sbjct: 60  FHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPN 119

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                IL+N +C  G +  A     ++   G+ P       L++GL   G ++ A    +
Sbjct: 120 LVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHD 179

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++  GF  D  ++ +LI  +CK GE    +++   V    +  +V  Y  +I ++ K  
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           +++EAF L   ++  G  P    Y+ +I G    G+ +DA   F++M ++   P+   + 
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFN 299

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +L+    + G+  E       M + G+ P    ++ + DG
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/230 (26%), Positives = 115/230 (50%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  +FN          +  Y+ ++   C++K F  A  L + M RK  +PD  TY+ 
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++    SG++  A + + +M D+G  P +R  + ++  L     ++ A  ++ K+  +G
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG 465

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ T++ LI+ +C+SG++E   +++  +   G   +V TY I+I      G+ +EA 
Sbjct: 466 IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEAL 525

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            LL  + ++G  P    Y  II  +F++ + D A     EM  +G  P +
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQ 575



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 107/242 (44%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L  R++R+   P    +  ++ +   S          Q+M  +G  P +   ++L+ 
Sbjct: 69  AVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILIN 128

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G +  A  +  K++K G+V D  TF +LI+ +C  G+++     +  V  LG   
Sbjct: 129 CFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHF 188

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  +Y  LI  + K G    A  LL  +  +  +P   +Y  II  M +    ++AF  F
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           SEM  KG  P+   Y+ LI+     G+  +A +   +M    + P    F+++ +     
Sbjct: 249 SEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308

Query: 311 GK 312
           GK
Sbjct: 309 GK 310


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 157/319 (49%), Gaps = 1/319 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK  E M+  N S +  T S++I+   K G V+ A++VF    +  C+  +  Y S++ 
Sbjct: 143 VWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID 202

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +      A+ L   M  +G V  +  Y  L++    SG+   A +  +EM  KG  P
Sbjct: 203 GLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQP 262

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  LV GL  AG    A+++  +    G  LD+  +N LI+T+CKS  ++   E++
Sbjct: 263 DHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIF 322

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + GL  DV T+  L+  + K+G I +AF LL ++   G  P  ++Y  +I G+ + 
Sbjct: 323 GELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKS 382

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ ++A     EM+  G+ P+   Y  LI    +GGR  +A     E++  G    +  +
Sbjct: 383 GRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFAN-TVTY 441

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + + +GL   G+ D A K+
Sbjct: 442 NTILNGLCMAGRVDEAYKL 460



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 145/305 (47%), Gaps = 5/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+  GK G VD A  +F + T+       ++YNSL+  L        A  L R M
Sbjct: 196 TYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREM 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  T+  LV     +G+  EA+   QE  D G    V   ++L+  L  +  L
Sbjct: 256 LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRL 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  ++ + G V D+ TFN+L++ +CKSG +     +   + + G   DV+ Y  L
Sbjct: 316 DEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTL 375

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G ++EA +LL  +   G++P    Y  +I    + G+ +DA   F E+  KG 
Sbjct: 376 IDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF 435

Query: 259 PPNRPVYTMLITMCGRGGRFVEAA---NYLVEMTEMG-LTPISRCFDLVTDGLKNCGKHD 314
                  T+L  +C   GR  EA    N + + T  G + P    +  + +G +  G  +
Sbjct: 436 ANTVTYNTILNGLC-MAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSE 494

Query: 315 LAEKI 319
           LA  +
Sbjct: 495 LANSL 499



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 154/356 (43%), Gaps = 37/356 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+ +  +++    + +I+ F K G    A+ V+        +     +N L+ A 
Sbjct: 75  EALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAF 134

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + K     + L   M  +   P+  TY+IL++A C  G + +A +   +M  +G  P +
Sbjct: 135 KKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNI 194

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++ GL  +G+++ A  +  +M  +G V     +NSLI  + +SG  +   +++  
Sbjct: 195 FTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFRE 254

Query: 183 VCKLGL----------------------------------CA-DVSTYKILIPAVSKAGM 207
           +   GL                                  CA DV+ Y +LI  + K+  
Sbjct: 255 MLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKR 314

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +DEA+ +   L EDG  P    +  ++ G+ + G+  DAF    +MK  G  P+  VY  
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNT 374

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           LI    + GR  EA   L+EM  +G  P    ++ + D  ++C    + + + L E
Sbjct: 375 LIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLID--ESCKGGRIEDALRLFE 428



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 138/301 (45%), Gaps = 1/301 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           + P+    +   +   GL++ +VE   +     C      YNSL+ A  +      A A+
Sbjct: 52  LQPRIFIELARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAV 111

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R M + G  PD  T+ +L+NA+  + ++    +  +EM ++  +P V    +L+  +  
Sbjct: 112 YRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCK 171

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +E A ++   M  +G   ++ T+ S+I+ + KSG V+    ++  +   GL A    
Sbjct: 172 CGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVV 231

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  + ++G  D A +L   ++  G +P    +  ++ G+   G+  +A   F E +
Sbjct: 232 YNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEAR 291

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-H 313
             G   +  +Y +LI    +  R  EA     E+ E GL P    F+ + DGL   G+ H
Sbjct: 292 DVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIH 351

Query: 314 D 314
           D
Sbjct: 352 D 352



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 35/227 (15%)

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L +G  +AG LE + + + +M      L    +NSLI+   K+G  +  + +Y  + + G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 188 LCAD-----------------------------------VSTYKILIPAVSKAGMIDEAF 212
           L  D                                   V TY ILI AV K G +++A 
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           ++  ++   G +P    Y  +I G+ + G  D AF  F EM  +G    R VY  LI   
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GR GR   AA    EM   GL P    F  +  GL   G+   A +I
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRI 286


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 142/296 (47%), Gaps = 1/296 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +ELM+   LS + +T + +I+ + K   V  A+ V NK         V+ YNSL+   C 
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  AY L+  M  +G VPD+ TY  ++++ C S ++ EA +    +  KG NP V  
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G   AG ++ A  M+ KM+ +  + +  TFN+LI  +C  G+++    +   + 
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K+GL   VST  ILI  + K G  D A+     ++  G KP    Y   I+   R G+  
Sbjct: 595 KIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLL 654

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           DA    ++M+  G  P+   Y+ LI   G  G+   A + L  M + G  P    F
Sbjct: 655 DAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTF 710



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 142/298 (47%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + +   +D+A +VFN+     C++  + Y  L+  LC  +    A  L  +M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P  RTY +L+ + C S +  EA   ++EM + G  P +    +L+  L +    
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF 374

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++ +M+++G + ++ T+N+LI   CK G +E  V++   +    L  +  TY  L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  + +A  +L+ ++E    P    Y  +I G  R G FD A+   S M  +G 
Sbjct: 435 IKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL 493

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P++  YT +I    +  R  EA +    + + G+ P    +  + DG    GK D A
Sbjct: 494 VPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEA 551



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 138/299 (46%), Gaps = 8/299 (2%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     +D A+++F K     C   V  Y  L+ +LC  +    A  L++ M   G  
Sbjct: 296 HGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIK 355

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY +L+++ CS  K  +A+E L +M +KG  P V   + L+ G    G +E A  +
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V  M  +    +  T+N LI+  CKS  V   + +   + +  +  DV TY  LI    +
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G  D A+RLL  + + G  P    Y  +I  + +  + ++A   F  ++ KG  PN  +
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           YT LI    + G+  EA   L +M      P S  F+ +  GL  C    L E   L E
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL--CADGKLKEATLLEE 591



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 36/334 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I+        + A E+  +         V+ YN+L+   C+  +   A  ++  
Sbjct: 359 HTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVEL 418

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +   P+ RTY  L+  +C S  + +A   L +M ++   P V   + L+ G   +G 
Sbjct: 419 MESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            +SA ++++ M  +G V D  T+ S+I+++CKS  VE   +++ S+ + G+  +V  Y  
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTA 537

Query: 198 LIPAVSKAGMIDEAF-------------------RLLHNLVEDGH--------------- 223
           LI    KAG +DEA                     L+H L  DG                
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIG 597

Query: 224 -KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P  S    +I  + + G FD A+  F +M   G  P+   YT  I    R GR ++A 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAE 657

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           + + +M E G++P    +  +  G  + G+ + A
Sbjct: 658 DMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFA 691



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 17/318 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM    L     T + +I+   K   V+ A ++F+          V++Y +L+  
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDG 541

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A+ ++ +M+ K  +P+  T+  L++  C+ GK++EA    ++M   G  P 
Sbjct: 542 YCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPT 601

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+  LL  G  + A     +M+  G   D  T+ + I+T C+ G +    +M  
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMA 661

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D+ TY  LI      G  + AF +L  + + G +P    +  +IK +    
Sbjct: 662 KMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL--- 718

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                     EMK      + P    +  M      F      L +M E  +TP ++ ++
Sbjct: 719 ----------EMKYGKQKGSEPELCAMSNMM----EFDTVVELLEKMVEHSVTPNAKSYE 764

Query: 302 LVTDGLKNCGKHDLAEKI 319
            +  G+   G   +AEK+
Sbjct: 765 KLILGICEVGNLRVAEKV 782



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 117/254 (46%), Gaps = 4/254 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+LL +L    L      +   M+     P+  TY  +VN +C  G + EA +++ ++ 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G +P       L+ G      L+SA ++ N+M  +G   +   +  LI  +C +  ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +        V TY +LI ++  +    EA  L+  + E G KP    Y  +I
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTE-MG 292
             +  + +F+ A     +M  KG  PN   Y  LI   C RG   +E A  +VE+ E   
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRG--MIEDAVDVVELMESRK 423

Query: 293 LTPISRCFDLVTDG 306
           L+P +R ++ +  G
Sbjct: 424 LSPNTRTYNELIKG 437



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 1/235 (0%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y  L+N+    G + E ++   EM +    P +   + +V G    G +E A Q V+K++
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G   D  T+ SLI   C+  +++   +++  +   G   +   Y  LI  +  A  ID
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  L   + +D   P    Y  +IK +    +  +A     EM+  G  PN   YT+LI
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEKIELLE 323
                  +F +A   L +M E GL P    ++ + +G    G   D  + +EL+E
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELME 420



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 21/243 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL----- 67
           VSP   T S +I+ +G  G  + A +V  +     C+     + SL+  L E+K      
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727

Query: 68  -------------FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
                        F     L+ +M+     P+ ++Y  L+   C  G +R A++    M 
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787

Query: 115 -DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            ++G +P     + L+           A ++V+ MI  G +  LE+   LI  + K GE 
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK 847

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E    ++ ++ + G   D   +KI+I  V K G+++  + L + + ++G K     Y+ +
Sbjct: 848 ERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLL 907

Query: 234 IKG 236
           I+G
Sbjct: 908 IEG 910



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/384 (19%), Positives = 148/384 (38%), Gaps = 93/384 (24%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-------- 64
           V+P  +  + +I+ + K G VD A  +  K  + NC    L +N+L+  LC         
Sbjct: 528 VNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEAT 587

Query: 65  ------VKL---------------------FHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
                 VK+                     F  AY+  ++M+  G  PD  TY   +  +
Sbjct: 588 LLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G++ +A++ + +M + G +P +     L++G  + G    A  ++ +M   G     
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ 707

Query: 158 ETFNSLIETIC-------KSGEVEFC-----------VEMYYSVCKLGLCADVSTYKILI 199
            TF SLI+ +        K  E E C           VE+   + +  +  +  +Y+ LI
Sbjct: 708 HTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767

Query: 200 PAVSKAGMI------------------------------------DEAFRLLHNLVEDGH 223
             + + G +                                    +EA +++ +++  GH
Sbjct: 768 LGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGH 827

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P       +I G++++G+ +     F  +   G+  +   + ++I   G+ G  VEA  
Sbjct: 828 LPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQG-LVEAFY 886

Query: 284 YLVEMTEM-GLTPISRCFDLVTDG 306
            L  + E  G    S+ + L+ +G
Sbjct: 887 ELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
 gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
          Length = 502

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 166/361 (45%), Gaps = 47/361 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFG-KHGLVDNAVEVF-NKCTAFNCQQCVLLYNSLLFAL 62
           + L   + L+ +P+T  ++ E F   H   D+AV  F +   +    Q + L+NSLL AL
Sbjct: 127 LALFPRHGLAFTPRTFPIMFERFAVSHRRPDHAVRFFLSLHRSHGVAQDLPLFNSLLDAL 186

Query: 63  ----------------------------------CEVKLFHGAYALIRRMIRKGFVPDKR 88
                                             C VK    A  ++R+M+  G  P K 
Sbjct: 187 VKSRHAGKAASLVRALERRFPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKT 246

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFN-----PPVRGRDLLVQGLLNAGYLESAKQ 143
           TY I++  +  SG+++ A +F  +M  +G N     P V     ++ GL  AG L+ A++
Sbjct: 247 TYNIILKGFFRSGQLQHAWDFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARK 306

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + ++M ++G    + T+N+LI+  CK G VE  V ++  + + G   +V TY +LI  + 
Sbjct: 307 VFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLC 366

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PN 261
            AG ID A +LL  +  +G +P    Y  +I  +F  G  + A   F  M  KG    PN
Sbjct: 367 HAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMS-KGEECLPN 425

Query: 262 RPVYTMLIT---MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           +  Y ++I+   +  R      AA  +VEM + G  P    F+ V +GL   G  +L+ +
Sbjct: 426 QDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFMFNRVLNGLMLTGNQELSRE 485

Query: 319 I 319
           +
Sbjct: 486 L 486


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 138/281 (49%), Gaps = 2/281 (0%)

Query: 38  EVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           E+ N  + +  NC+  V+ YN ++  LC+V     A  L   M  +G +P   +Y  L++
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIH 258

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C +GK  E++  L EM D+G  P +   ++L+  L   G +  AK+++  MI+ G V 
Sbjct: 259 GFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL T+NSLIE  C  G++    E++ S+   G   DV +Y +LI   SK   ++EA +L 
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + ++  G +P    Y  ++KG+F  G+ DDA   FS MK  G   N   Y + +    + 
Sbjct: 379 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKN 438

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               EA     E+            + + DGL   GK + A
Sbjct: 439 DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 479



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 128/274 (46%), Gaps = 6/274 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA----Q 107
           ++ YN+L+  LC       A  L  RM + G  PD  TY  L+   C +G +  A    Q
Sbjct: 139 IVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQ 198

Query: 108 EFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           E L ++S    N  P V   +++V GL   G  + AKQ+  +M  QG +  + ++NSLI 
Sbjct: 199 EMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIH 258

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C +G+ E    +   +   GL  D+ T+ +LI  + K G + EA +LL  ++E G  P
Sbjct: 259 GFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVP 318

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I+G    G  + A   F  M  KG  P+   Y +LI    +  +  EA    
Sbjct: 319 DLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLY 378

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EM  +G  P    +D +  G+   GK D A+K+
Sbjct: 379 NEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 412



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 162/351 (46%), Gaps = 41/351 (11%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y ++  P   T ++I++   K G  D A ++F +         ++ YNSL+   C    +
Sbjct: 207 YEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKW 266

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             +  L+  M+ +G  PD  T+ +L++  C  GK+ EA++ L  M + G  P +   + L
Sbjct: 267 EESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSL 326

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++G    G L SA+++   M  +G   D+ ++N LI    K+ +VE  +++Y  +  +G 
Sbjct: 327 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 386

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLL-----HNLVEDGH-------------------K 224
             +V TY  L+  +  AG +D+A +L      H + E+ +                   K
Sbjct: 387 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMK 446

Query: 225 PFPSLYAP-----------IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
            F  L +            +I G+ + G+ + A+  F ++  +GH PN   YT++I    
Sbjct: 447 LFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFC 506

Query: 274 RGGRFVEAANYLVEMTEM-GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           R G+ V+ AN L++  E  G TP    ++ +  G     K  L E ++LL 
Sbjct: 507 REGQ-VDKANVLIQKMEANGCTPDIITYNTLMRGFYESNK--LEEVVQLLH 554



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 129/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G V  A ++            ++ YNSL+   C V   + A  L   M
Sbjct: 287 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 346

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y +L+N +  + K+ EA +   EM   G  P V   D L++G+  AG +
Sbjct: 347 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 406

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK++ + M   G   +  T+   ++ +CK+  +   ++++  +       ++     L
Sbjct: 407 DDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCL 466

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG ++ A+ L   L  +GH+P    Y  +I G  R GQ D A     +M+  G 
Sbjct: 467 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 526

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+       +  E    L  M +  ++P +    +V D L
Sbjct: 527 TPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDML 575



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N LL  L ++K +   ++L  +M   G   D+ T  IL+N  C+  ++RE       + 
Sbjct: 72  FNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGIL 131

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G++P +   + L++GL     +  A ++  +M K G   D+ T+ +LI+ +C +G + 
Sbjct: 132 RRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNIN 191

Query: 175 FCVEMY------YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             ++++       S  ++    +V TY I++  + K G  DEA +L   +   G  P   
Sbjct: 192 IALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSII 251

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G    G+++++     EM  +G  P+   + +LI    + G+ +EA   L  M
Sbjct: 252 SYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVM 311

Query: 289 TEMGLTPISRCFDLVT 304
            E G+ P     DLVT
Sbjct: 312 IESGIVP-----DLVT 322



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 89/177 (50%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   +MK + ++ +  T  + ++   K+  +  A+++F +  + N +  +   N L+  L
Sbjct: 411 KLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGL 470

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A+ L  ++  +G  P+  TY I+++ +C  G++ +A   +Q+M   G  P +
Sbjct: 471 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 530

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
              + L++G   +  LE   Q++++M ++    D  T + +++ + K  + + C+ +
Sbjct: 531 ITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 587



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 105/274 (38%), Gaps = 45/274 (16%)

Query: 98  CSSGKMR--EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           C +G +    A  F   M      P +   + L+ GL    +      + N+M   G   
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 156 DLETFNSLIETICKSGEVE---------------------------FCVE--------MY 180
           D  T N L+  +C    +                             C+E        ++
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED------GHKPFPSLYAPII 234
             + KLG   DV TY  LI  +   G I+ A +L   ++ D        KP    Y  I+
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G+ D+A   F EMK +G  P+   Y  LI      G++ E+   L EM + GL 
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQ 282

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           P    F+++ D L  C +  + E  +LL V + S
Sbjct: 283 PDMVTFNVLIDTL--CKEGKVIEAKKLLGVMIES 314



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 46/109 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E +       +  T +++I  F + G VD A  +  K  A  C   ++ YN+L+  
Sbjct: 480 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 539

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
             E         L+ RM +K   PD  T +I+V+      K +E    L
Sbjct: 540 FYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 588


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 140/274 (51%), Gaps = 2/274 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+F +  +  C+     YN L+ +LC       A  ++++M   G      TY  L++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C + K REA+E   EM   G +      + L+ GL  +  +E A Q++++MI +G   
Sbjct: 479 GFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKP 538

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+NSL+   C+ G+++   ++  ++   G   D+ TY  LI  + KAG ++ A +LL
Sbjct: 539 DKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLIT-MCG 273
            ++   G    P  Y P+I+G+FR+ +  +A   F EM  +   PP+   Y ++   +C 
Sbjct: 599 RSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            GG   EA ++LVE+ E G  P      ++ +GL
Sbjct: 659 GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 149/320 (46%), Gaps = 3/320 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y L    +T + +++ + + G +D A+ +  +   F C    +  N ++   C+
Sbjct: 212 LEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271

Query: 65  VKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A   I+ M  + GF PD+ T+  LVN  C +G ++ A E +  M  +G++P V 
Sbjct: 272 EGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY 331

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL   G ++ A +++++MI +    +  T+N+LI T+CK  +VE   E+   +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  DV T+  LI  +        A  L   +   G +P    Y  +I  +  +G+ 
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D+A     +M++ G   +   Y  LI    +  +  EA     EM   G++  S  ++ +
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            DGL  C    + +  +L++
Sbjct: 512 IDGL--CKSRRVEDAAQLMD 529



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V  AVEV ++    +C    + YN+L+  LC+      A  L R +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  T+  L+   C +   R A E  +EM  KG  P     ++L+  L + G L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  M+ +M   G    + T+N+LI+  CK+ +     E++  +   G+  +  TY  L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  +++A +L+  ++ +G KP    Y  ++    R G    A      M   G 
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL---VEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  LI+   + GR VE A+ L   ++M  + LTP    ++ V  GL
Sbjct: 572 EPDIVTYGTLISGLCKAGR-VEVASKLLRSIQMKGINLTP--HAYNPVIQGL 620



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G V +A+E+ +          V  YNS++  LC++     A  ++ +M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  TY  L++  C   ++ EA E  + ++ KG  P V   + L+QGL      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G   D  T+N LI+++C  G+++  + M   +   G    V TY  L
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA    EA  +   +   G       Y  +I G+ +  + +DA     +M ++G 
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   RGG   +AA+ +  MT  G  P    +  +  GL   G+ ++A K
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 319 I 319
           +
Sbjct: 597 L 597



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 10/328 (3%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN-KCTAFNCQQCVLLYNSLL 59
           M K +E MK     +   T  ++IE + +  L D  + V +     F  +     YN +L
Sbjct: 102 MKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRML 161

Query: 60  FALCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             L +   +KL   ++A   +M   G  PD  T+ +L+ A C + ++R A   L++M   
Sbjct: 162 NLLVDGNSLKLVEISHA---KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P  +    ++QG +  G L+ A ++  +M++ G      + N ++   CK G VE  
Sbjct: 219 GLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 177 VEMYYSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +     +  + G   D  T+  L+  + KAG +  A  ++  ++++G+ P    Y  +I 
Sbjct: 279 LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVIS 338

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+  +A     +M  +   PN   Y  LI+   +  +  EA      +T  G+ P
Sbjct: 339 GLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               F+ +  GL     H +A  +EL E
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVA--MELFE 424



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 37/171 (21%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F + G +  A ++    T+  C+  ++ Y +L+  LC+      A  L+R +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 79  IRKGF------------------------------------VPDKRTYAILVNAWCSSG- 101
             KG                                      PD  +Y I+    C+ G 
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGG 661

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            +REA +FL E+ +KGF P      +L +GLL     E+  ++VN ++++ 
Sbjct: 662 PIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 139/287 (48%), Gaps = 2/287 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E+  +     C   ++ +N+L+  LC   LF   + ++ +M   G  PD R YA +++  
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G ++ A E L  M   G  P V   + L++GL +A   E  ++++ +M  +   LD 
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN L++  C++G V+  +E+   +   G   DV TY  +I    K G+IDEA  LL +
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G KP    Y  ++KG+    ++ DA    S+M  +G P N   +  LI    + G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +A   L +M   G +P    +  V DGL   GK D  E +ELL V
Sbjct: 488 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTD--EALELLNV 532



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 35/326 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-------------- 66
           + II+   K G +  A E+ N+  ++  +  V+ YN+LL  LC  +              
Sbjct: 301 ATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFD 360

Query: 67  ---------------------LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
                                L      L+ +M+  G +PD  TY  ++N +C  G + E
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDE 420

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ M+  G  P      ++++GL +A     A+ ++++MI+QG  L+  TFN+LI 
Sbjct: 421 AVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLIN 480

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  DEA  LL+ +V  G  P
Sbjct: 481 FLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y+ I   + R G+ +     F  ++      +  +Y  +I+   + G    A  +L
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCG 311
             M   G  P    + ++  GL + G
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEG 626



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLVD  +E+  +     C   V+ Y +++   C+  L   A  L++ M
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSM 428

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--FNPPVRGRDLLVQGLLNAG 136
              G  P+  +Y I++   CS+ +  +A++ + +M  +G   NP     + L+  L   G
Sbjct: 429 TACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITF--NTLINFLCKKG 486

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            +E A +++ +M+  G   DL +++++I+ + K+G+ +  +E+   +   G+  +   Y 
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +  A+S+ G I++  ++  N+ +   +    LY  +I  + +RG+ + A  F + M   
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G  PN   YT+LI      G   EA   L E+   G
Sbjct: 607 GCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 133/301 (44%), Gaps = 2/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+ V ++     C     +Y+ +L A C    F  A  ++  +  +G
Sbjct: 128 VVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARG 187

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D     +++NA C  G + +A   L+++   G  P V   + +++GL  A      +
Sbjct: 188 CALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQ 247

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ +M++     ++ TFN+LI  +C++G  E   E+   + + G   D+  Y  +I  +
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +  A  +L+ +   G KP    Y  ++KG+    ++++     +EM  K  P + 
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +L+    + G        L +M   G  P    +  V +G   C +  + E + LL
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGF--CKEGLIDEAVMLL 425

Query: 323 E 323
           +
Sbjct: 426 K 426



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  ++ ALC       A A++  M R+G  P    Y +++ A C  G  R A   L+++ 
Sbjct: 125 YFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLH 184

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G    V   +L++  + + G ++ A  ++  +   G   D+ ++N++++ +C +    
Sbjct: 185 ARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWG 244

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + ++    ++ T+  LI  + + G+ +    +L  + E G  P   +YA II
Sbjct: 245 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATII 304

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G    A    + M   G  PN   Y  L+       R+ E    L EM +    
Sbjct: 305 DGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 364

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                F+++ D     G  D    IELLE
Sbjct: 365 LDDVTFNILVDFFCQNGLVD--RVIELLE 391



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 7/269 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN+++   C       A    RR+     VP +  TY  +V A C+ G++ +A   L EM
Sbjct: 93  YNAMVAGYCRAGQLESA----RRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEM 148

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G  P      ++++     G   SA +++  +  +G  LD+   N ++  IC  G V
Sbjct: 149 PRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSV 208

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  + +   +   G   DV +Y  ++  +  A        L+  +V     P    +  +
Sbjct: 209 DKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTL 268

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + R G F+      ++M   G  P+  +Y  +I    + G    A   L  M   GL
Sbjct: 269 ISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGL 328

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            P   C++ +  GL  C      E  ELL
Sbjct: 329 KPNVVCYNTLLKGL--CSAERWEETEELL 355



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 35/208 (16%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           ++P T + +I    K GLV+ A+E                                   L
Sbjct: 470 LNPITFNTLINFLCKKGLVEQAIE-----------------------------------L 494

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +++M+  G  PD  +Y+ +++    +GK  EA E L  M +KG +P       +   L  
Sbjct: 495 LKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSR 554

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +    QM + +       D   +N++I ++CK GE E  +E    +   G   + ST
Sbjct: 555 EGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNEST 614

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           Y ILI  ++  G + EA  +L  L   G
Sbjct: 615 YTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     + G ++  +++F+       +   +LYN+++ +LC+     
Sbjct: 535 NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETE 594

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A   +  M+  G VP++ TY IL+    S G ++EAQE L E+  KG
Sbjct: 595 RAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  135 bits (339), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 147/305 (48%), Gaps = 2/305 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++    T ++I++   + G VD A E+F+K     C    + YN+L+  LC+
Sbjct: 33  VEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCK 92

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    AY L+  M  KG+ PD  TY  +++  C  GK+ EA++F   M  +G++P V  
Sbjct: 93  DENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVA 152

Query: 125 RDLLVQGLLNAGYLESAKQMVN--KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
            + L+  L   G +  A  +     M  +    DL T+N+LI+  C+  + +  ++++  
Sbjct: 153 YNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKD 212

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           V   G   D  TY  ++  +++   +DEA  +   +V+ G  P  + Y+ ++ G  R G 
Sbjct: 213 VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGN 272

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
                  + EM  K   P+  +   +I M  +  +  +A   L EM+++G  P    +++
Sbjct: 273 MARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNI 332

Query: 303 VTDGL 307
           + DGL
Sbjct: 333 LLDGL 337



 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 149/303 (49%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++    + G +   +E++ + T       VLL N+++  LC+ K    A+ ++  M
Sbjct: 259 TYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEM 318

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G VPD  TY IL++  C +  + +A E    M D G  P +    +++ GL     +
Sbjct: 319 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 378

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + ++MI++  V D+ TFN L++ +CK+G+++   ++   + +  +  D  T   L
Sbjct: 379 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTL 438

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKG 257
           +  + +    DEA RL   +VE G       +  ++ G+ R G+   A  FF  M K  G
Sbjct: 439 MHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDG 498

Query: 258 H-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              P+   YT L+      GR  +A +Y  +MT  G  P    ++ + +GL+  G+H  A
Sbjct: 499 EFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQA 558

Query: 317 EKI 319
           +++
Sbjct: 559 DRL 561



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 4/274 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++++  LC+      A  ++  M  KG  PD  TY I+V+  C +GK+ EA E   
Sbjct: 10  VVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFH 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M ++G +      + L+ GL     +E A +++ +M  +G+  D  T+N+++  +C+ G
Sbjct: 70  KMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-- 229
           +V    + + S+   G   DV  Y  L+ A+ K G + EA+ L   +     K  P L  
Sbjct: 130 KVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLIT 189

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I G  R  + D+A   F ++  KG+ P+   Y  ++    R     EA     +M 
Sbjct: 190 YNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMV 249

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           + G  P    + +V  G  +C   ++A  +EL E
Sbjct: 250 DSGCAPNGATYSIVLSG--HCRVGNMARCLELYE 281



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K G V  A+E+  + T       V  Y  ++  LC       A  L  +M
Sbjct: 12  TYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKM 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G   +   Y  L+N  C    +  A + L+EM+ KG+ P     + ++ GL   G +
Sbjct: 72  IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKV 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS--VCKLGLCADVSTYK 196
             AKQ  + M  +G+  D+  +N L++ + K G+V     ++ +  +    +  D+ TY 
Sbjct: 132 SEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYN 191

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI    +    DEA +L  +++  G+ P    Y  I+ G+ R+   D+A   F +M   
Sbjct: 192 TLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDS 251

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  PN   Y+++++   R G          EMTE   +P     + V D L    K D A
Sbjct: 252 GCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDA 311

Query: 317 EKI 319
            K+
Sbjct: 312 HKV 314



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KGF PD  TY+ +++  C +GK+ EA E ++EM++KG NP V    ++V  L  AG 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A ++ +KMI++G   +   +N+LI  +CK   +E   ++   +   G   D  TY  
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + + G + EA +   ++   G+ P    Y  ++  +++ G+  +A+  F  M +  
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 258 H--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
               P+   Y  LI    R  +  EA     ++   G  P +  ++ +  GL      D 
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDE 240

Query: 316 AEKI 319
           AE++
Sbjct: 241 AEEM 244



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 121/244 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+L+   C V+    A  L + +I KG++PD  TY  ++        M EA+E  +
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M D G  P      +++ G    G +    ++  +M ++ F  D+   N++I+ +CK+ 
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V+   ++   + K+G   DV TY IL+  + K  ++D+A  L   +V++G  P    Y+
Sbjct: 307 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYS 366

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ +  +  DA   F  M  +   P+   + +L+    + G+  EA + L  M+E 
Sbjct: 367 VVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEH 426

Query: 292 GLTP 295
            + P
Sbjct: 427 NVLP 430



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 2/257 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M          T +++++   K  LVD A E+F+      C   ++ Y+ +L  L
Sbjct: 313 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 372

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    H A  L  RMI +  VPD  T+ IL++  C +GK+ EA++ L  MS+    P  
Sbjct: 373 CKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDG 432

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL      + A ++   M+++G V D+   N ++  +C+ G++   +  + S
Sbjct: 433 VTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKS 492

Query: 183 VCKLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           + K       DV TY  L+ A+ +AG +D+A      +   G  P    Y  ++ G+ ++
Sbjct: 493 MVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQ 552

Query: 241 GQFDDAFCFFSEMKIKG 257
           G+   A      MK KG
Sbjct: 553 GRHIQADRLTQAMKEKG 569



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 2/154 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++M  +N+     T + ++    +    D AV +F           VL +N +L  LC 
Sbjct: 420 LDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479

Query: 65  VKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A    + M++    F PD  TY  LVNA   +G++ +A ++ Q+M+  G  P  
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDY 539

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
              + L+ GL   G    A ++   M ++GF+ D
Sbjct: 540 VAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 137/268 (51%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++  LC+ KL + AY L   M  +G  PD  TY  L+  +C  G++  A   L 
Sbjct: 150 VVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLD 209

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP V   ++L+  L   G ++ AK ++  M K+G    + T+++L++  C  G
Sbjct: 210 EMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVG 269

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV+   ++++++ ++G+  +V +Y I+I  + K   +DEA  LL  ++     P    Y 
Sbjct: 270 EVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYN 329

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+   A    +EM  +G P +   YT L+    +     +A    ++M E 
Sbjct: 330 SLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 389

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + DGL   G+   A+++
Sbjct: 390 GIQPTMYTYTALIDGLCKGGRLKNAQEL 417



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 149/301 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F   G +  A  + ++    N    V +YN L+ ALC+      A  L+  M
Sbjct: 187 TYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G  P   TY+ L++ +C  G+++ A++    M   G NP V   ++++ GL     +
Sbjct: 247 TKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRV 306

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M+ +  V D  T+NSLI+ +CKSG +   + +   +   G  ADV TY  L
Sbjct: 307 DEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   +D+A  L   + E G +P    Y  +I G+ + G+  +A   F  + +KG 
Sbjct: 367 LDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 426

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT++I+   + G F EA     +M + G  P +  F+++   L    ++D AEK
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEK 486

Query: 319 I 319
           +
Sbjct: 487 L 487



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 115/239 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ +   G V NA ++F+          V  YN ++  LC+ K    A  L+R M
Sbjct: 257 TYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K  VPD  TY  L++  C SG++  A   + EM  +G    V     L+  L     L
Sbjct: 317 LHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNL 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  KM ++G    + T+ +LI+ +CK G ++   E++  +   G C DV TY ++
Sbjct: 377 DKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVM 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I  + K GM DEA  +   + ++G  P    +  II+ +F + + D A     EM  KG
Sbjct: 437 ISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 126/273 (46%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    K G V  A  +    T    +  V+ Y++L+   C V     A  +   M++
Sbjct: 224 NILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQ 283

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P+  +Y I++N  C   ++ EA   L+EM  K   P     + L+ GL  +G + S
Sbjct: 284 MGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITS 343

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++N+M  +G   D+ T+ SL++ +CK+  ++    ++  + + G+   + TY  LI 
Sbjct: 344 ALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALID 403

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G +  A  L  +L+  G       Y  +I G+ + G FD+A    S+M+  G  P
Sbjct: 404 GLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIP 463

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           N   + ++I          +A   L EM   GL
Sbjct: 464 NAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 122/255 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +N +L +L ++K +  A +L ++M  KG   +  T  IL+N +C  G+M  +   L 
Sbjct: 10  IIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLG 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G+ P     + L++GL   G ++ +    +K++ QGF +D  ++ +L+  +CK G
Sbjct: 70  KILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E    V++   +       +V  Y  +I  + K  +++EA+ L   +   G  P    Y 
Sbjct: 130 ETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYT 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G    GQ   AF    EM +K   P   +Y +LI    + G   EA N L  MT+ 
Sbjct: 190 TLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKE 249

Query: 292 GLTPISRCFDLVTDG 306
           G+ P    +  + DG
Sbjct: 250 GIKPGVVTYSTLMDG 264



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 129/294 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  F   G +  +  V  K      Q   +  N+L+  LC       +     ++
Sbjct: 47  TLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  D  +Y  L+N  C  G+ R A + L+ + D+   P V   + ++ GL     +
Sbjct: 107 VAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLV 166

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M  +G   D  T+ +LI   C  G++     +   +    +   V  Y IL
Sbjct: 167 NEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNIL 226

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ K G + EA  LL  + ++G KP    Y+ ++ G    G+  +A   F  M   G 
Sbjct: 227 INALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGV 286

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN   Y ++I    +  R  EA N L EM    + P +  ++ + DGL   G+
Sbjct: 287 NPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 4/147 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + +I+   K G + NA E+F       C   V  Y  ++  LC+  +
Sbjct: 386 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 445

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A A+  +M   G +P+  T+ I++ +     +  +A++ L EM  KG        D 
Sbjct: 446 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL----LVLDF 501

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV 154
            V  +      + A++++++MI +G +
Sbjct: 502 KVADVFVQNENDKAEKLLHEMIAKGLL 528


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 163/342 (47%), Gaps = 37/342 (10%)

Query: 3   KTIELMKPYN-LSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + +E ++  +  SV+P     +++I    K G  D AV++F    +   +  ++ YN+++
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVI 139

Query: 60  FALCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
             LC+      A  L+  MIRKG    PD  TY  L+NA+  + ++REA  F ++M   G
Sbjct: 140 SGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAG 199

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV---- 173
            NP V   ++LV G+   G +E A ++++ M   G V D+ T+NS+I  +C +G+V    
Sbjct: 200 INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAA 259

Query: 174 --------------------EFC--------VEMYYSVCKLGLCADVSTYKILIPAVSKA 205
                                FC        +E+   +C+  +  DV TY IL+  + + 
Sbjct: 260 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 319

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +  AF LL  +V  G+ P    Y  ++ G+ + G+ ++A     EM ++G      +Y
Sbjct: 320 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           + L++   R G   +A   L EM  + + P    +++V  GL
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGL 421



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 138/289 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K  + S    T + +++ F K G++  A+EV  +    N    V+ Y  L+  LC V
Sbjct: 260 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 319

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ L+  ++R+G++PD   Y  LV+  C SG++ EA + ++EMS +G    V   
Sbjct: 320 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             LV G   AG +  A++++ +M+    V  L T+N ++  + K G +   V +   +  
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV TY  LI  + KA  + EA  L   +   G  P       ++ G+ R G+ DD
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDD 499

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           A+    EM  K H PN  VYT LI    +  R  +A   L  M   G+ 
Sbjct: 500 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVA 548



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 140/298 (46%), Gaps = 3/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II      G V  A E+       +C   ++ +N+LL   C+  +   A  ++  M
Sbjct: 241 TYNSIIHALCVAGKVVEAAEILK---TMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+  +PD  TY ILVN  C  G+++ A   L+E+  +G+ P V     LV GL  +G +
Sbjct: 298 CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++V +M  +G    +  ++SL+   C++G V    E+   +  + +   + TY I+
Sbjct: 358 EEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIV 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G I +A  L+ +LV  G+ P    Y  +I G+ +  +  +A     EM  +G 
Sbjct: 418 LGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGC 477

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN      ++    R GR  +A + +VEM+     P    +  + DGL    + D A
Sbjct: 478 FPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDA 535



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 119/271 (43%), Gaps = 7/271 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN LL  L +         + + ++  G  P+  T+ IL+   C +G+   A EFL+ + 
Sbjct: 30  YNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFLRALD 89

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +    P V   ++L+ GL   G  + A ++   M       ++ T+N++I  +CKSG +E
Sbjct: 90  EFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLE 149

Query: 175 FCVEMYYSVCKLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
              E+   + + G     D+ TY  LI A  +A  I EA      +   G  P       
Sbjct: 150 KARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNI 209

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G+ + G  ++A      MK+ G  P+   Y  +I      G+ VEAA  L  M+   
Sbjct: 210 LVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS--- 266

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +P    F+ + DG   C    L   +E+LE
Sbjct: 267 CSPDLVTFNTLLDGF--CKAGMLPRALEVLE 295



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 110/273 (40%), Gaps = 35/273 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++   K G ++ A ++  + +   C+  V++Y+SL+   C     H A  ++  M+   
Sbjct: 347 LVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSIN 406

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP   TY I++      G + +A   + ++  +G+ P V   + L+ GL  A  +  A 
Sbjct: 407 MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREAC 466

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + ++M  +G   +  T  S++                      GLC             
Sbjct: 467 DLADEMASRGCFPNDVTLGSVV---------------------FGLC------------- 492

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G +D+A+ L+  +    H P   +Y  +I G+ +  + DDA      M+ +G   + 
Sbjct: 493 -RVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDD 551

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             Y  LI     GGR  EA     EM   G  P
Sbjct: 552 FAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLP 584



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 4/209 (1%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+   V   + L+  L+ +G+     ++   ++  G   +L TF  LI   CK+G+    
Sbjct: 22  GYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRA 81

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E   ++ +  +  DV  + +LI  + K G  D+A +L  N+     KP    Y  +I G
Sbjct: 82  LEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISG 141

Query: 237 MFRRGQFDDAFCFFSEMKIKG--HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           + + G  + A     EM  KG    P+   Y  LI    R  R  EA  +  +M   G+ 
Sbjct: 142 LCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGIN 201

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P     +++  G+  C   D+ E +E+L+
Sbjct: 202 PDVLTCNILVSGI--CKDGDVEEALEILD 228



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 4/194 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G +  AV + +   A      V+ YN+L+  LC+      A  L   M
Sbjct: 413 TYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 472

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  T   +V   C  G++ +A   + EMS K   P V     L+ GL  +  +
Sbjct: 473 ASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 532

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++ M  QG  LD   +  LI ++   G V   + MY  +   G   D ST K L
Sbjct: 533 DDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 592

Query: 199 IPAVSKAGMIDEAF 212
                +A M +  F
Sbjct: 593 ----EEAAMSNSVF 602



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 4/246 (1%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           + G+  D  +Y  L++    SG      +  +++   G +P +    +L++G   AG   
Sbjct: 20  QDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAM 79

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A + +  + +     D+  FN LI  + K G  +  V+++ ++    +  ++ TY  +I
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVI 139

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
             + K+G +++A  LL  ++  G K  P +  Y  +I   +R  +  +A  F  +MK  G
Sbjct: 140 SGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAG 199

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+     +L++   + G   EA   L  M   G  P    ++ +   L   GK  + E
Sbjct: 200 INPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGK--VVE 257

Query: 318 KIELLE 323
             E+L+
Sbjct: 258 AAEILK 263


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 140/291 (48%), Gaps = 1/291 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I  F  HG +D+A  V +   T++     V  YNSL++   +  L   A  ++  M  K
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  +Y ILV+ +C  GK+ EA   L EMS  G  P   G + L+        +  A
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  +M ++G   D+ TFNSLI  +C+  E++  + +   +   G+ A+  TY  LI A
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G I EA +L++ +V  G       Y  +IKG+ R G+ D A   F +M   GH P+
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                +LI    R G   EA  +  EM   G TP    F+ + +GL   G+
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR 649



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 145/285 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++++ F K G +D A  V N+ +A   +   + +N L+ A C+      A  + R M
Sbjct: 426 SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 485

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  T+  L++  C   +++ A   L++M  +G        + L+   L  G +
Sbjct: 486 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 545

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++VN+M+ QG  LD  T+NSLI+ +C++GEV+    ++  + + G      +  IL
Sbjct: 546 KEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNIL 605

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + ++GM++EA      +V  G  P    +  +I G+ R G+ +D    F +++ +G 
Sbjct: 606 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 665

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           PP+   +  L++   +GG   +A   L E  E G  P  R + ++
Sbjct: 666 PPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSIL 710



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 7/319 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+   Y+   + ++ ++++E          A  VF    +      +  +  ++ A C 
Sbjct: 170 LEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCA 229

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A +L+R M + G VP+   Y  L+++     ++ EA + L+EM   G  P    
Sbjct: 230 VNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET 289

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL     +  A +MVN+M+ +GF  D  T+  L+  +CK G V+   +++Y + 
Sbjct: 290 FNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP 349

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQF 243
           K     ++  +  LI      G +D+A  +L ++V   G  P    Y  +I G ++ G  
Sbjct: 350 K----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV 405

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A     +M+ KG  PN   YT+L+    + G+  EA N L EM+  GL P +  F+ +
Sbjct: 406 GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL 465

Query: 304 TDGLKNCGKHDLAEKIELL 322
                 C +H + E +E+ 
Sbjct: 466 ISAF--CKEHRIPEAVEIF 482



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 43/276 (15%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T+    +I  F K   +  AVE+F +     C+  V  +NSL+  LCEV     A 
Sbjct: 455 LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHAL 514

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG- 124
            L+R MI +G V +  TY  L+NA+   G+++EA++ + EM  +G       +N  ++G 
Sbjct: 515 WLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGL 574

Query: 125 -----------------RD----------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                            RD          +L+ GL  +G +E A +   +M+ +G   D+
Sbjct: 575 CRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDI 634

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFNSLI  +C++G +E  + M+  +   G+  D  T+  L+  + K G + +A  LL  
Sbjct: 635 VTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDE 694

Query: 218 LVEDG----HKPFPSLYAPII--KGMFRRGQFDDAF 247
            +EDG    H+ +  L   II  + + RR  ++ AF
Sbjct: 695 GIEDGFVPNHRTWSILLQSIIPQETLDRRRFYNAAF 730


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  134 bits (338), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K  +   A+    +     C      YN+++   C++ +   A  L++  
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGFVPD+ TY  L+N  C+ G +  A E   E   KG  P +   + LV+GL   G +
Sbjct: 317 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q++N+M ++G   D++T+N +I  +CK G +     +       G   DV T+  L
Sbjct: 377 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D A +L+  + E G  P    Y  ++ G+ + G+ ++    F EM +KG 
Sbjct: 437 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 496

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            PN   Y +LI    R  +  EA+  +V+M++ GL P +  F+ +  G   C   DL
Sbjct: 497 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGF--CRNGDL 551



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT +++I    K G + +A  V N          V  +N+L+   C+      A  L+ R
Sbjct: 396 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 455

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY  ++N  C +GK+ E  E  QEM  KG +P     ++L++    +  
Sbjct: 456 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 515

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A +++ KM ++G   D  +FN+LI   C++G++E    ++  + + G  A   T+  
Sbjct: 516 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNT 575

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A S    +  A ++   ++  GH+     Y  +I G  +    D A+    EM  KG
Sbjct: 576 LIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 635

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   +  +I       R  +A   +  M ++G+ P       V D + N  K ++A 
Sbjct: 636 FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP------EVVDTILNADKKEIAA 689

Query: 318 KIELLE 323
              L+E
Sbjct: 690 PKILVE 695



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G V+ A+E+FN+  A   +  +++YNSL+  LC   L   A  ++  M  +G  PD +TY
Sbjct: 339 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 398

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++N  C  G + +A   + +   KG+ P V   + L+ G      L+SA Q+V +M +
Sbjct: 399 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 458

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+NS++  +CK+G+V    E +  +   G   +  TY ILI    ++  ++E
Sbjct: 459 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 518

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +++  + ++G  P    +  +I G  R G  + A+  F +++ KG+      +  LI 
Sbjct: 519 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 578

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                     A     EM   G    S  + ++ DG
Sbjct: 579 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 614



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            GL+ +A++V N+     C   +  YN ++  LC++     A  ++   I KG++PD  T
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +  L++ +C   K+  A + ++ M + G  P     + ++ GL  AG +    +   +MI
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +G   +  T+N LIE  C+S ++E   ++   + + GL  D  ++  LI    + G ++
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A+ L   L E G+      +  +I     +     A   F EM  KGH  +   Y +LI
Sbjct: 553 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 612

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +      A  +LVEM + G  P    F  V + L
Sbjct: 613 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 650



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 1/258 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  +  LCE      A  L+  M R   VPD  TY  L+   C     +EA  +L+ M 
Sbjct: 224 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 282

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P     + ++ G      ++ A +++   + +GFV D  T+ SLI  +C  G+VE
Sbjct: 283 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 342

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E++      G+  D+  Y  L+  +   G+I  A ++++ + E+G  P    Y  +I
Sbjct: 343 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 402

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G   DA    ++  +KG+ P+   +  LI    +  +   A   +  M E G+ 
Sbjct: 403 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIA 462

Query: 295 PISRCFDLVTDGLKNCGK 312
           P +  ++ V +GL   GK
Sbjct: 463 PDTITYNSVLNGLCKAGK 480



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 19/316 (6%)

Query: 15  VSPQTLSLI----IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SP T+  +    I  + + G + +AV+ F +   F C      YN+++ AL +      
Sbjct: 44  LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQ 103

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ +  RM+  G  PD  T+ I + ++C + +   A   L+ +  +G          +V 
Sbjct: 104 AHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVC 159

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G+   A+Q+ ++M+      +L  FN ++  +CK G+V     +   V + G+  
Sbjct: 160 GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSI 219

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF--PSL--YAPIIKGMFRRGQFDDA 246
           ++ TY I I  + +AG + EA RL+     DG + +  P +  Y  +I+G+ ++    +A
Sbjct: 220 NLFTYNIWIRGLCEAGRLPEAVRLV-----DGMRAYAVPDVVTYNTLIRGLCKKSMPQEA 274

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             +   M  +G  P+   Y  +I    +     EA   L +    G  P    +  + +G
Sbjct: 275 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 334

Query: 307 LKNCGKHDLAEKIELL 322
           L  C + D+   +EL 
Sbjct: 335 L--CAEGDVERALELF 348



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 4/213 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T +++IE F +   ++ A +V  K +        + +N+L++  C      GAY L 
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           +++  KG+     T+  L+ A+     M  A++   EM  KG         +L+ G    
Sbjct: 559 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 618

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             ++ A   + +MIK+GF+  + TF  +I ++  +  V   V + + + K+G+  +V   
Sbjct: 619 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV--V 676

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             ++ A  K   I     L+ +L++ GH  +P+
Sbjct: 677 DTILNADKKE--IAAPKILVEDLMKKGHISYPT 707



 Score = 40.8 bits (94), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T + +I  F     +  A ++F++  +   +     Y  L+   C+      AY 
Sbjct: 567 SATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYM 626

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  MI+KGF+P   T+  ++N+   + ++ +A   +  M   G  P V      V  +L
Sbjct: 627 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV------VDTIL 680

Query: 134 NAGYLESA--KQMVNKMIKQGFV 154
           NA   E A  K +V  ++K+G +
Sbjct: 681 NADKKEIAAPKILVEDLMKKGHI 703


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 154/308 (50%), Gaps = 5/308 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G ++NA+ +++     F  +  V+ Y++L+  LC          L+  
Sbjct: 67  TYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEE 126

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  P+  TY  LVNA    G+ +EA   L++M+  G  P +    L+++GL   G 
Sbjct: 127 MAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGE 186

Query: 138 LESAKQMVNK--MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           +E+A ++V++  MI+ G   D+ TFNS+++ +CK   +     ++    + G   +V TY
Sbjct: 187 IEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTY 246

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  +SK   +DEA +LL  +VE G +     Y+ ++ G+ + G+ +DA     +M+ 
Sbjct: 247 STLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRD 306

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y  LI    +  R  EA   L EM E G  P    +  +  GL   G+ D 
Sbjct: 307 AGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFD- 365

Query: 316 AEKIELLE 323
            E +E+L+
Sbjct: 366 -EAVEILD 372



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 148/308 (48%), Gaps = 1/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K   +D A+++  K     C+   + Y++++  L +V     A  ++R+M
Sbjct: 245 TYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G +PD  TY  L++ +    ++REA   L+EM + GF+P V     L  GL  +G  
Sbjct: 305 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRF 364

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKI 197
           + A ++++ M  +G   +  T++S+++ +CK+G V   +  +  + +  + A  V  Y  
Sbjct: 365 DEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSA 424

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + KAG IDEA+  L  ++  G  P    ++ +I G+   G+ D     F  M  +G
Sbjct: 425 LIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERG 484

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    R  R  EA +   +M   GL+P       +  GL    + + A+
Sbjct: 485 CVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAK 544

Query: 318 KIELLEVS 325
           +I+  E S
Sbjct: 545 RIQDEENS 552



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 143/329 (43%), Gaps = 5/329 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M     + +  T + ++      G    A  +  +  A  C   ++ +  ++  L
Sbjct: 122 KLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGL 181

Query: 63  CEVKLFHGAYALIRRM--IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           C+      A+ ++  M  I  G  PD  T+  +++  C   ++ +A    +   ++G  P
Sbjct: 182 CKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRP 241

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     L+ GL     ++ A Q++ KM++ G   +  T++++++ + K G +E  V + 
Sbjct: 242 NVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL 301

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   D  TY  LI    K   + EA  LL  ++E G  P    Y  +  G+ R 
Sbjct: 302 RQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRS 361

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRC 299
           G+FD+A      M  +G  PN   Y+ ++    + GR  EA  Y  +M  +  + P    
Sbjct: 362 GRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIA 421

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           +  + DGL   GK D  E  E LE  +R+
Sbjct: 422 YSALIDGLCKAGKID--EAYEFLERMIRA 448



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 127/272 (46%), Gaps = 8/272 (2%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC+ +    A  L ++M+ K   PD  TY  L++      +++EA +  +E   KG
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFC 176
            +P V   + ++ GL   G +E+A  + + M I  GF   + T+++LI+ +C+  EV+  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            ++   +   G   +  TY  L+ A+   G   EAF LL  +  +G  P    +  IIKG
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 237 MFRRGQFDDAFCFFSEMKI--KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           + + G+ + AF    EM +   G  P+   +  ++    +  R ++A N      E G  
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCR 240

Query: 295 PISRCFDLVTDGLKNCGKHD-----LAEKIEL 321
           P    +  + DGL    K D     LA+ +EL
Sbjct: 241 PNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 272


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K  +   A+    +     C      YN+++   C++ +   A  L++  
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 317

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGFVPD+ TY  L+N  C+ G +  A E   E   KG  P +   + LV+GL   G +
Sbjct: 318 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 377

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q++N+M ++G   D++T+N +I  +CK G +     +       G   DV T+  L
Sbjct: 378 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 437

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D A +L+  + E G  P    Y  ++ G+ + G+ ++    F EM +KG 
Sbjct: 438 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 497

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            PN   Y +LI    R  +  EA+  +V+M++ GL P +  F+ +  G   C   DL
Sbjct: 498 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGF--CRNGDL 552



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT +++I    K G + +A  V N          V  +N+L+   C+      A  L+ R
Sbjct: 397 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 456

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY  ++N  C +GK+ E  E  QEM  KG +P     ++L++    +  
Sbjct: 457 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 516

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A +++ KM ++G   D  +FN+LI   C++G++E    ++  + + G  A   T+  
Sbjct: 517 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNT 576

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A S    +  A ++   ++  GH+     Y  +I G  +    D A+    EM  KG
Sbjct: 577 LIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 636

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   +  +I       R  +A   +  M ++G+ P       V D + N  K ++A 
Sbjct: 637 FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP------EVVDTILNADKKEIAA 690

Query: 318 KIELLE 323
              L+E
Sbjct: 691 PKILVE 696



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G V+ A+E+FN+  A   +  +++YNSL+  LC   L   A  ++  M  +G  PD +TY
Sbjct: 340 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 399

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++N  C  G + +A   + +   KG+ P V   + L+ G      L+SA Q+V +M +
Sbjct: 400 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 459

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+NS++  +CK+G+V    E +  +   G   +  TY ILI    ++  ++E
Sbjct: 460 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 519

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +++  + ++G  P    +  +I G  R G  + A+  F +++ KG+      +  LI 
Sbjct: 520 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 579

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                     A     EM   G    S  + ++ DG
Sbjct: 580 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 615



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            GL+ +A++V N+     C   +  YN ++  LC++     A  ++   I KG++PD  T
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +  L++ +C   K+  A + ++ M + G  P     + ++ GL  AG +    +   +MI
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +G   +  T+N LIE  C+S ++E   ++   + + GL  D  ++  LI    + G ++
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A+ L   L E G+      +  +I     +     A   F EM  KGH  +   Y +LI
Sbjct: 554 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 613

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +      A  +LVEM + G  P    F  V + L
Sbjct: 614 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 651



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 1/258 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  +  LCE      A  L+  M R   VPD  TY  L+   C     +EA  +L+ M 
Sbjct: 225 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 283

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P     + ++ G      ++ A +++   + +GFV D  T+ SLI  +C  G+VE
Sbjct: 284 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 343

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E++      G+  D+  Y  L+  +   G+I  A ++++ + E+G  P    Y  +I
Sbjct: 344 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 403

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G   DA    ++  +KG+ P+   +  LI    +  +   A   +  M E G+ 
Sbjct: 404 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIA 463

Query: 295 PISRCFDLVTDGLKNCGK 312
           P +  ++ V +GL   GK
Sbjct: 464 PDTITYNSVLNGLCKAGK 481



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 142/316 (44%), Gaps = 19/316 (6%)

Query: 15  VSPQTLSLI----IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SP T+  +    I  + + G + +AV+ F +   F C      YN+++ AL +      
Sbjct: 45  LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQ 104

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ +  RM+  G  PD  T+ I + ++C + +   A   L+ +  +G          +V 
Sbjct: 105 AHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVC 160

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G+   A+Q+ ++M+      +L  FN ++  +CK G+V     +   V + G+  
Sbjct: 161 GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSI 220

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF--PSL--YAPIIKGMFRRGQFDDA 246
           ++ TY I I  + +AG + EA RL+     DG + +  P +  Y  +I+G+ ++    +A
Sbjct: 221 NLFTYNIWIRGLCEAGRLPEAVRLV-----DGMRAYAVPDVVTYNTLIRGLCKKSMPQEA 275

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             +   M  +G  P+   Y  +I    +     EA   L +    G  P    +  + +G
Sbjct: 276 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 335

Query: 307 LKNCGKHDLAEKIELL 322
           L  C + D+   +EL 
Sbjct: 336 L--CAEGDVERALELF 349



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 4/213 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T +++IE F +   ++ A +V  K +        + +N+L++  C      GAY L 
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           +++  KG+     T+  L+ A+     M  A++   EM  KG         +L+ G    
Sbjct: 560 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 619

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             ++ A   + +MIK+GF+  + TF  +I ++  +  V   V + + + K+G+  +V   
Sbjct: 620 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV--V 677

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             ++ A  K   I     L+ +L++ GH  +P+
Sbjct: 678 DTILNADKKE--IAAPKILVEDLMKKGHISYPT 708



 Score = 40.8 bits (94), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T + +I  F     +  A ++F++  +   +     Y  L+   C+      AY 
Sbjct: 568 SATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYM 627

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  MI+KGF+P   T+  ++N+   + ++ +A   +  M   G  P V      V  +L
Sbjct: 628 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV------VDTIL 681

Query: 134 NAGYLESA--KQMVNKMIKQGFV 154
           NA   E A  K +V  ++K+G +
Sbjct: 682 NADKKEIAAPKILVEDLMKKGHI 704


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 143/302 (47%), Gaps = 2/302 (0%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + + GL  +A  +F       C +    Y +LL  LC   +   A A+   M   G  PD
Sbjct: 119 YCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPD 178

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              Y+I+V+  C +G+  EA   L +   KGF P V   + L+ G  + G LE A  +  
Sbjct: 179 SHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFK 238

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M  +G + ++ T+  LI   CKSG+VE  + +Y  + + GL  +V TY  LI      G
Sbjct: 239 GMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEG 298

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            ++ AFRLLH++   G  P       +I  + + G+ ++A  F   +  KG   N+ +YT
Sbjct: 299 HLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYT 358

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            +I    + G+F  A N + ++   G  P +  +  + DGL  C ++ L E I LL   +
Sbjct: 359 SMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGL--CRENKLLEAISLLNDMI 416

Query: 327 RS 328
            S
Sbjct: 417 ES 418



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     + +P T + +++     G+V  A+ VF       C     +Y+ ++  LC   
Sbjct: 134 LMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAG 193

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A AL+   + KGFVP+   Y  L++ +CS+G +  A +  + M  KG  P VR   
Sbjct: 194 RAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYT 253

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   +G +E A  + ++MI+ G   ++ T+ +LI+  C  G +E    + +S+   
Sbjct: 254 QLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEAC 313

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  +  T  +LI A+ K G I+EA + L +LV+ G K    +Y  +I  + + G+FD A
Sbjct: 314 GLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGA 373

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                ++  +G  P+  +Y+ LI    R  + +EA + L +M E G+   +  F ++ D
Sbjct: 374 HNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILID 432



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 4/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S +   C   LF  A  L   M ++G      TYA L+   C +G +REA      M 
Sbjct: 112 YTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMW 171

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      ++V GL  AG    A  ++   + +GFV ++  +N+LI+  C +G++E
Sbjct: 172 PDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLE 231

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +   G   +V TY  LI    K+G ++ A  L   ++E G  P    Y  +I
Sbjct: 232 LAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLI 291

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G    G  + AF     M+  G  PN     +LI    + GR  EA  +L  + + G+ 
Sbjct: 292 QGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIK 351

Query: 295 PISRCFDLVTDGLKNCGK----HDLAEKI 319
                +  + D L   GK    H+L +KI
Sbjct: 352 VNQVIYTSMIDALCKSGKFDGAHNLMQKI 380



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 126/289 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ +   G ++ A+++F    +  C   V  Y  L+   C+      A  L  RMI  G
Sbjct: 220 LIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAG 279

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+   CS G +  A   L  M   G  P      +L+  L   G +E A+
Sbjct: 280 LAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQ 339

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q +  ++++G  ++   + S+I+ +CKSG+ +    +   +   G   D   Y  LI  +
Sbjct: 340 QFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGL 399

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   + EA  LL++++E G +     +  +I    R  + D        M   G  P+ 
Sbjct: 400 CRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDV 459

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             YT+ I    + GR  +A + +++M + G+ P    ++ +  G  N G
Sbjct: 460 VTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLG 508



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 140/310 (45%), Gaps = 16/310 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +  M+   L+ +  T  ++I+   KHG ++ A +          +   ++Y S++ A
Sbjct: 304 FRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDA 363

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+   F GA+ L++++I +GFVPD   Y+ L++  C   K+ EA   L +M + G    
Sbjct: 364 LCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQAN 423

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+   L     +S K + ++M   G   D+ T+   I + C+ G +E    M  
Sbjct: 424 AVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMI 483

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G+  +++TY  LI   +  G++ +AF  L N++++G KP    Y  ++  + ++ 
Sbjct: 484 QMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKN 543

Query: 242 QFDD------AFCFFSEMKIKGH----------PPNRPVYTMLITMCGRGGRFVEAANYL 285
            + D      +     +MK+                  VY   I    +  R  EA ++L
Sbjct: 544 SYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFL 603

Query: 286 VEMTEMGLTP 295
           V M    LTP
Sbjct: 604 VGMQSANLTP 613



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 110/268 (41%), Gaps = 6/268 (2%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL AL      HG  + +  +  +  V +  TY  L+NA+C +G +  A+  L  +  
Sbjct: 47  NTLLMALAR----HGMLSDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLR 102

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P        V G    G    A ++   M ++G      T+ +L++ +C +G V  
Sbjct: 103 AGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVRE 162

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + ++  +   G   D   Y I++  +  AG   EA  LL + +  G  P  ++Y  +I 
Sbjct: 163 AMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALID 222

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G    G  + A   F  M+ KG  PN   YT LI    + G+   A      M E GL P
Sbjct: 223 GYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAP 282

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               +  +  G   C +  L     LL 
Sbjct: 283 NVVTYTTLIQG--QCSEGHLEHAFRLLH 308



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 16/247 (6%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           RM   G  PD  TY + + ++C  G+M +A+  + +M D G  P +   + L++G  N G
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLG 508

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG----------------EVEFCVEMY 180
            +  A   +  MI  G   + E++  L+  + K                  +++   E+ 
Sbjct: 509 LVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELL 568

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             V KL   +    Y   I  +SK   ++EA   L  +      P   +Y  +I+  +R 
Sbjct: 569 EEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRM 628

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
               +A  F   M  + + P    Y  +I      G F  A +   ++           +
Sbjct: 629 KLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAW 688

Query: 301 DLVTDGL 307
            ++ DGL
Sbjct: 689 KILIDGL 695



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/264 (17%), Positives = 100/264 (37%), Gaps = 51/264 (19%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I  + + G +++A  +  +      +  +  YN+L+     + L   A++ ++ M
Sbjct: 461 TYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNM 520

Query: 79  IRKGFVPDKRTYAIL-----------------VNAW-------------------CSSG- 101
           I  G  P+  +Y +L                 ++ W                   CSS  
Sbjct: 521 IDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSAS 580

Query: 102 --------------KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
                         ++ EA+ FL  M      P       +++       L+ A + ++ 
Sbjct: 581 YVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDS 640

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M+K+ ++  LE++  +I  +C+ G       ++  +       D   +KILI  + + G 
Sbjct: 641 MVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDGLLQKGN 700

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYA 231
             +  RLL  + E   +P  ++Y+
Sbjct: 701 TADCSRLLSFMEEQNCRPGSAIYS 724


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 3/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ + K G VD A+EV        CQ     YNSL++ L + K  H A AL+ +M
Sbjct: 464 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G +P+  TY  L+   C       A    + M   G  P      +L   L  AG  
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRA 583

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A   +   +++G  L    + +LI+   K+G  +F   +   +   G   D  TY +L
Sbjct: 584 EEAYSFI---VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +   G K     Y  +I  M R G+ D A   ++EM   GH
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   YT+ I    + GR  +A + +++M   G+ P    ++++ DG  + G  D A
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 154/377 (40%), Gaps = 58/377 (15%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLF 60
           ++  E+M+   L       +++ +   K G  + A   +  K  A       + Y +L+ 
Sbjct: 552 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALT----KVYYTTLID 607

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +      A  LI RMI +G  PD  TY++L++A C   ++ EA   L +MS +G   
Sbjct: 608 GFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC 667

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    +L+  +L  G  + AK+M N+M   G      T+   I + CK G +E   ++ 
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 727

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAF---------------------------- 212
             + + G+  DV TY ILI      G ID AF                            
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKG 787

Query: 213 -----------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                                  +LL  +V+ G  P  + Y+ +I G  + G+ ++A   
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  KG  PN  +YT+LI  C     F +A +++  M+E G  P    + L+  GL N
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 907

Query: 310 CGKHDLAEKI--ELLEV 324
            G  +  + +  +LLE+
Sbjct: 908 EGDFEKVKSLFCDLLEL 924



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 1/310 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +MK    S + +  + +I    K G V +A  +F+          V+ YN+++    ++ 
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A  +   M + G  PD  TY  L+   C   K  EA+E L     +GF P V    
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 396

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   A   + A +M NKM+     LDL+ F  LI ++ K   ++   E+   +   
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  +V TY  +I    K+G +D A  +L  +  DG +P    Y  ++ G+ +  +   A
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 516

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++M+  G  PN   YT L+        F  A      M + GL P    + ++TD 
Sbjct: 517 MALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 576

Query: 307 LKNCGKHDLA 316
           L   G+ + A
Sbjct: 577 LCKAGRAEEA 586



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 42/350 (12%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I  + K G +++A+++        C      YN+L++ LC+ K    A  L+
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELL 380

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGK--------------------------------- 102
              +++GF P   T+  L+N +C + K                                 
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 103 --MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
             ++EA+E L E+S  G  P V     ++ G   +G ++ A +++  M + G   +  T+
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           NSL+  + K  ++   + +   + K G+  +V TY  L+         D AFRL   + +
Sbjct: 501 NSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 560

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           +G KP    YA +   + + G+ ++A+ F      KG    +  YT LI    + G    
Sbjct: 561 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDF 617

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           AA  +  M + G TP S  + ++   L  C +  L E + +L ++SLR +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHAL--CKQKRLNEALPILDQMSLRGI 665



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 16/327 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M     +    T S+++    K   ++ A+ + ++ +    +  +  Y  L+  +  
Sbjct: 622 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 681

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   M   G  P   TY + +N++C  G++ +A++ + +M  +G  P V  
Sbjct: 682 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 741

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------- 171
            ++L+ G  + GY++ A   + +M+      +  T+  L++ + K               
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 801

Query: 172 ---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
              E++   ++   + K GL   V+TY  LI    KAG ++EA  LL ++   G  P   
Sbjct: 802 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 861

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y  +IK       F+ A  F S M   G  P    Y +L+      G F +  +   ++
Sbjct: 862 IYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDL 921

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDL 315
            E+G       + ++ DGL   G  D+
Sbjct: 922 LELGYNHDEVAWKILNDGLLKAGYVDI 948



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 46/350 (13%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P+T +   ++  + + G +  A  +F       CQ+    Y  L+  LC+ K    A 
Sbjct: 214 LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKAL 273

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M R G  P+ R +  L++  C SG++ +A+     M   G  P V   + ++ G 
Sbjct: 274 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 133 LNAGYL----------------------------------ESAKQMVNKMIKQGFVLDLE 158
              G +                                  E A++++N  +K+GF   + 
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393

Query: 159 TFNSLIETICKSGEVEFCV----EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           TF +LI   C + + +  +    +M  S CKL    D+  +  LI ++ K   + EA  L
Sbjct: 394 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKL----DLQVFGKLINSLIKKDRLKEAKEL 449

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L+ +  +G  P    Y  II G  + G+ D A      M+  G  PN   Y  L+    +
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 509

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +  +A   L +M + G+ P    +  +  G   C +HD      L E+
Sbjct: 510 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQG--QCDEHDFDNAFRLFEM 557



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 143/346 (41%), Gaps = 35/346 (10%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L++SP+  +  +    +  + +    V+++          + YN+++ + C+      A+
Sbjct: 144 LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 203

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              R ++  G  P+  T   LV  +C +G++R+A      M   G         +L+QGL
Sbjct: 204 RYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 263

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            +A  +  A  +   M + G   ++  F  LI  +CKSG V     ++ ++ + G+   V
Sbjct: 264 CDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSV 323

Query: 193 STYKILIPAVSKAGMIDEAFR----------------------------------LLHNL 218
            TY  +I   SK G +++A +                                  LL+N 
Sbjct: 324 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNA 383

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V++G  P    +  +I G     +FDDA    ++M       +  V+  LI    +  R 
Sbjct: 384 VKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRL 443

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIELLE 323
            EA   L E++  GL P    +  + DG    GK D+A E ++++E
Sbjct: 444 KEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 18/219 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-----CVLLYNSLLFALCEVKL 67
           V+P   T +++I+  G  G +D A     +    +C+      C+LL + L   L  V+ 
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 68  FHGA-----------YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              +           + L+ RM++ G  P   TY+ L+  +C +G++ EA   L  M  K
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 854

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P      LL++   +  + E A   V+ M + GF   LE++  L+  +C  G+ E  
Sbjct: 855 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKV 914

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             ++  + +LG   D   +KIL   + KAG +D  F++L
Sbjct: 915 KSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL   + L          +E   KHGL                   V  Y+SL+ 
Sbjct: 800 MWNLIELDITWQL----------LERMVKHGL----------------NPTVTTYSSLIA 833

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+  M  KG  P++  Y +L+   C +    +A  F+  MS+ GF P
Sbjct: 834 GFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP 893

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    LLV GL N G  E  K +   +++ G+  D   +  L + + K+G V+ C +M 
Sbjct: 894 QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953

Query: 181 YSVCKLGLCADVSTYKIL 198
             + K   C    TY ++
Sbjct: 954 SIMEKRYCCISSQTYALV 971


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K  + S    T + +++ F K G++  A+EV  +    N    V+ Y  L+  LC V
Sbjct: 226 EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRV 285

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--------- 116
                A+ L+  ++R+G++PD   Y  LV+  C SG++ EA + ++EMS +         
Sbjct: 286 GQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSI 345

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
              PP+   ++++ GL+  G +  A  +++ ++ +G+V D+ T+N+LI+ +CK+  V   
Sbjct: 346 NMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREA 405

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            ++   +  LG   +  T   ++  + + G +D+A+ L+  +    H P   +Y  +I G
Sbjct: 406 CDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDG 465

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + +  + DDA      M+ +G   +   Y  LI     GGR  EA     EM   G  P
Sbjct: 466 LCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLP 524



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 129/285 (45%), Gaps = 12/285 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II      G V  A E+       +C   ++ +N+LL   C+  +   A  ++  M
Sbjct: 207 TYNSIIHALCVAGRVVEAAEILK---TMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 263

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+  +PD  TY ILVN  C  G+++ A   L+E+  +G+ P V     LV GL  +G +
Sbjct: 264 CRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEI 323

Query: 139 E---------SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           E         SA++++ +M+    V  L T+N ++  + K G +   V +   +   G  
Sbjct: 324 EEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYV 383

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            DV TY  LI  + KA  + EA  L   +   G  P       ++ G+ R G+ DDA+  
Sbjct: 384 PDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSL 443

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             EM  K H PN  VYT LI    +  R  +A   L  M   G+ 
Sbjct: 444 VVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVA 488



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 155/336 (46%), Gaps = 20/336 (5%)

Query: 3   KTIELMKPYN-LSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + +E ++  +  SV+P     + +I    K G  D AV++F    +      +  YN+++
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139

Query: 60  FALCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAW-CSSGKMREAQEFLQEMSDK 116
             LC+      A  L+  MIR+G    PD  TY  L+NA  C  G + EA E L  M   
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLA 199

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V   + ++  L  AG +  A +++  M       DL TFN+L++  CK+G +   
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRA 256

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +C+  +  DV TY IL+  + + G +  AF LL  +V  G+ P    Y  ++ G
Sbjct: 257 LEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDG 316

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNR-------PVYTMLITMCG--RGGRFVEAANYLVE 287
           + + G+ ++A     EM  +             P++T  I + G  + G   +A + + +
Sbjct: 317 LCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISD 376

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +   G  P    ++ + DGL  C  + + E  +L +
Sbjct: 377 LVARGYVPDVVTYNTLIDGL--CKANRVREACDLAD 410



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 143/305 (46%), Gaps = 12/305 (3%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +LI     K G V+ A+E+ +          V+ YNS++ ALC       A  +++ M  
Sbjct: 174 TLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM-- 231

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD  T+  L++ +C +G +  A E L+EM  +   P V    +LV GL   G ++ 
Sbjct: 232 -SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 290

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE---------FCVEMYYSVCKLGLCAD 191
           A  ++ ++++QG++ D+  + SL++ +CKSGE+E            E+   +  + +   
Sbjct: 291 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP 350

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY I++  + K G I +A  L+ +LV  G+ P    Y  +I G+ +  +  +A     
Sbjct: 351 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLAD 410

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM   G  PN      ++    R GR  +A + +VEM+     P    +  + DGL    
Sbjct: 411 EMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSD 470

Query: 312 KHDLA 316
           + D A
Sbjct: 471 RMDDA 475



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 134/296 (45%), Gaps = 9/296 (3%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           +V+       C   ++ +  L+   C+      A   +R +      PD   +  L++  
Sbjct: 48  KVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGL 107

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG--FVL 155
              G   +A +  + M     NP +   + ++ GL  +G LE A++++ +MI++G     
Sbjct: 108 FKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAP 167

Query: 156 DLETFNSLIET-ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           D+ T+N+LI   ICK G+VE  +E+   +   G   DV TY  +I A+  AG + EA  +
Sbjct: 168 DIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEI 227

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  +      P    +  ++ G  + G    A     EM  +   P+   YT+L+    R
Sbjct: 228 LKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCR 284

Query: 275 GGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            G+ V+ A YL+ E+   G  P    +  + DGL   G+ + A K+ + E+S R +
Sbjct: 285 VGQ-VQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL-VKEMSAREI 338



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 113/265 (42%), Gaps = 6/265 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN LL  L +         + + ++  G  P+  T+ IL+   C +G+   A EFL+ + 
Sbjct: 30  YNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQATRALEFLRALD 89

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +    P V   + L+ GL   G  + A ++   M       D+ T+N++I  +CKSG +E
Sbjct: 90  EFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLE 149

Query: 175 FCVEMYYSVCKLG--LCADVSTYKILIPA-VSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
              E+   + + G     D+ TY  LI A + K G ++EA  +L  +   G  P    Y 
Sbjct: 150 KARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYN 209

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  +   G+  +A      M      P+   +  L+    + G    A   L EM   
Sbjct: 210 SIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 266

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
            + P    + ++ +GL   G+  +A
Sbjct: 267 NILPDVITYTILVNGLCRVGQVQVA 291



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 8/247 (3%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           + G+  D  +Y  L++    SG      +  +++   G +P +    +L++G   AG   
Sbjct: 20  QDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAT 79

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A + +  + +     D+  FN LI  + K G  +  V+++ ++    +  D+ TY  +I
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIK-GMFRRGQFDDAFCFFSEMKIK 256
             + K+G +++A  LL  ++  G K  P +  Y  +I  G+ + G  ++A      MK+ 
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLA 199

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   Y  +I      GR VEAA  L  M+    +P    F+ + DG   C    L 
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVVEAAEILKTMS---CSPDLVTFNTLLDGF--CKAGMLP 254

Query: 317 EKIELLE 323
             +E+LE
Sbjct: 255 RALEVLE 261



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 78/180 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G +  AV + +   A      V+ YN+L+  LC+      A  L   M
Sbjct: 353 TYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEM 412

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  T   +V   C  G++ +A   + EMS K   P V     L+ GL  +  +
Sbjct: 413 ASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRM 472

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++ M  QG  LD   +  LI ++   G V   + MY  +   G   D ST K L
Sbjct: 473 DDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 142/312 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+ +       T S +I   GK G    A ++F +      +   + + +L+ AL +
Sbjct: 172 LEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGK 231

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M  +G  P   TY  L+  +   G + EA   L EM   G  P V  
Sbjct: 232 AGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVT 291

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL+ A  L+ A Q++ KM K+G   D  T+N+LI  + K+G +     ++  + 
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   DV TY  LI A+ KA  ++ A  L   +   G +P    Y  II  + + GQ D
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA   FSEM+ KG  P+   Y   +   GRGGRF EA     +M E GL P    +D + 
Sbjct: 412 DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL 471

Query: 305 DGLKNCGKHDLA 316
            GL    + D A
Sbjct: 472 LGLSKTKEVDDA 483



 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 147/306 (48%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K    +    + S +I   G+ G  + A+EV  +  A  C+  +  YN+L+  L + 
Sbjct: 33  EELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKA 92

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
             F  A  L+  M   G VPD RTY  L++    +G++ EA     EM ++G  P     
Sbjct: 93  GQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTY 152

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G  + A +++ +M + G   D+ T++SLI  + K GE     +++  + +
Sbjct: 153 NSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKR 212

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D  T+  L+ A+ KAG +D+A  LL  + E G KP    Y  +I G  + G   +
Sbjct: 213 RGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVE 272

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A+    EMK  G  P+   Y+ LIT   +  +  EA   L +M + G  P +  ++ + +
Sbjct: 273 AYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLIN 332

Query: 306 GLKNCG 311
           GL   G
Sbjct: 333 GLGKAG 338



 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 130/272 (47%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YNSLL AL +      A  L   +    + PD  +Y+ L+N+   +GK   A E + 
Sbjct: 9   VVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVA 68

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P +   + LV  L  AG  + A +++ +M   G V D+ T+N LI T+ K+G
Sbjct: 69  EMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAG 128

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +     ++  + + G   D  TY  LI  + K G   +A  LL  +   G  P    Y+
Sbjct: 129 RLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYS 188

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+   AF  F EMK +G  P+   +T L+   G+ GR  +A   L EM E 
Sbjct: 189 SLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKER 248

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+ P    ++ +  G    G  DL E   LL+
Sbjct: 249 GVKPGVVTYNALIAGFGKVG--DLVEAYNLLD 278



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 151/318 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + MK         T + +++  GK G VD+A+E+ ++      +  V+ YN+L+  
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY L+  M R G  PD  TY+ L+     + ++ EA + L++M  +G  P 
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD 323

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ GL  AG L  A ++ ++M  +G   D+ T+++LI  + K+  VE    ++ 
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFE 383

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +  +G+  D+ TY  +I  + KAG +D+A RL   +   G  P    Y   +  + R G
Sbjct: 384 EMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGG 443

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +F +A   F +MK  G  P+   Y  L+    +     +A   L E+ E G    S  FD
Sbjct: 444 RFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFD 503

Query: 302 LVTDGLKNCGKHDLAEKI 319
              + L + G  D A ++
Sbjct: 504 ECLEILTSWGNVDEAHEL 521



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 135/298 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G  + A  +F +  A      V+ Y+ L+ +L     +  A  ++  M
Sbjct: 11  TYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEM 70

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  LV+    +G+  EA   L EM D G  P VR  + L+  L  AG L
Sbjct: 71  QAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRL 130

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M ++G V D  T+NSLI  + K G  +  +E+   + + G   DV TY  L
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G   +AF+L   +   G KP    +  ++  + + G+ DDA     EMK +G 
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P    Y  LI   G+ G  VEA N L EM   G  P    +  +  GL    + D A
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEA 308



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 142/302 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + +I   GK G +  A  +F +     C      YNSL++ L +V     A  L+  
Sbjct: 115 RTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEE 174

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G  PD  TY+ L+      G+  +A +  QEM  +G  P       L+  L  AG 
Sbjct: 175 MERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGR 234

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A +++++M ++G    + T+N+LI    K G++     +   + + G   DV TY  
Sbjct: 235 VDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC 294

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + KA  +DEA ++L  + ++G  P    Y  +I G+ + G  +DA   F  MK KG
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y+ LIT  G+  R   A     EM  +G+ P    +  +   L   G+ D A+
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDAD 414

Query: 318 KI 319
           ++
Sbjct: 415 RL 416



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 132/286 (46%), Gaps = 5/286 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++  GK G  D A+ +  +     C   V  YN L+  L +      A+ L   M
Sbjct: 81  TYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEM 140

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G VPD  TY  L+      G+ ++A E L+EM   G  P V     L+ GL   G  
Sbjct: 141 RERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGET 200

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M ++G   D  TF +L++ + K+G V+  +E+   + + G+   V TY  L
Sbjct: 201 VKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNAL 260

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA+ LL  +  +G KP    Y+ +I G+ +  Q D+A     +M+ +G 
Sbjct: 261 IAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC 320

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           PP+   Y  LI   G+ G   +A      M   G  P     D+VT
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNP-----DVVT 361



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 121/244 (49%), Gaps = 3/244 (1%)

Query: 81  KGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           KGF  P+  TY  L+NA   +G+  EAQ   +E+    + P V     L+  L  AG  E
Sbjct: 2   KGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWE 61

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +A ++V +M  +G   +L T+N+L++ + K+G+ +  + +   +   G   DV TY  LI
Sbjct: 62  AALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI 121

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + KAG + EAF L   + E G  P    Y  +I G+ + G+   A     EM+  G P
Sbjct: 122 STLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCP 181

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y+ LIT  G+ G  V+A     EM   G  P S  F  + D L   G+ D  + +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVD--DAL 239

Query: 320 ELLE 323
           ELL+
Sbjct: 240 ELLD 243



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 119/251 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I   GK   V++A  +F +  +   Q  +  Y S++  L +      A  L   M
Sbjct: 361 TYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEM 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY   +N+    G+ +EA++  ++M + G  P V   D L+ GL     +
Sbjct: 421 RGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ ++I+QG   D   F+  +E +   G V+   E+       GL    S+Y  L
Sbjct: 481 DDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A++KAG + EAF  L +L E G KP    Y+ +I  + + GQ D AF    EM  +G 
Sbjct: 541 IDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600

Query: 259 PPNRPVYTMLI 269
             +   Y+ L+
Sbjct: 601 KLSPRSYSNLV 611



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 138/295 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK GL+++A  +F++  +  C   V+ Y++L+ AL +      A  L   M
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  ++     +G++ +A     EM  KG +P V   +  +  L   G  
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++   M + G + D+ T+++L+  + K+ EV+    +   + + G   D   +   
Sbjct: 446 KEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDEC 505

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  ++  G +DEA  LL      G  P  S Y  +I  + + G+  +AF    ++K +G 
Sbjct: 506 LEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG 565

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            P+   Y+ LI+  G+ G+   A   L EM++ GL    R +  +   L++ G  
Sbjct: 566 KPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQDWGAR 620



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 13/331 (3%)

Query: 3   KTIELMKPYNL-------SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL 53
           K  +L++ YNL          P   T S +I    K   +D A +V  K     C    +
Sbjct: 266 KVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTI 325

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            YN+L+  L +  L + A  L  RM  KG  PD  TY+ L+ A   + ++  A    +EM
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P +     ++  L  AG ++ A ++ ++M  +G   D+ T+N+ + ++ + G  
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAP 232
           +   +++  + + GL  DV+TY  L+  +SK   +D+A  LL  L+E G   F SL +  
Sbjct: 446 KEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGC-AFDSLKFDE 504

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            ++ +   G  D+A         KG  P    Y  LI    + GR  EA N L ++ E G
Sbjct: 505 CLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQG 564

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             P    +  +   L   G+ D A   ELLE
Sbjct: 565 GKPDIVSYSSLISALGQTGQIDTA--FELLE 593


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 146/302 (48%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS +I+   K G +  AV +F    A       ++Y++L+  LC+ +    A  ++ +M
Sbjct: 128 TLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 187

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD  TY +L++  C SG +  A+ F  EM + G  P V   ++L+ G   AG  
Sbjct: 188 KKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNT 247

Query: 139 ESAKQ-MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++A   +  +    G  +D+ T+ ++++ + K+ ++E  V +   +   G    ++TY  
Sbjct: 248 DAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNA 307

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + K G ++EA  LL  +V++G  P    Y  +I G+ +  +  +A+  F EM ++G
Sbjct: 308 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRG 367

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   YT LI    + G+  +A++    MT  G  P       + DGL   G+   A 
Sbjct: 368 LALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 427

Query: 318 KI 319
           +I
Sbjct: 428 RI 429



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T +++I  F K G  D A     + T  N C   +  Y +++  L + K    A AL+ +
Sbjct: 233 TYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEK 292

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +   G  P   TY  L+N  C  G++ EA + L+++ D G  P V     L+ GL     
Sbjct: 293 ITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR 352

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A ++  +M  +G  LD   + +LI  + ++G++     +Y ++   G   DV T   
Sbjct: 353 SFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLST 412

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  +SKAG I  A R+  ++   G  P   +Y+ +I G+ +  + D A    ++MK   
Sbjct: 413 MIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAF 472

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P+   Y +LI    + G    A  +  EM E G  P    ++++  G    G  D A
Sbjct: 473 CTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 531



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    L++     + +I E  + G +  A  V+   T+  C   V+  ++++  
Sbjct: 76  YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 135

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  + + M  +G  P++  Y+ L++  C + KM  A E L +M      P 
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 195

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++L+ GL  +G +E+A+   ++M++ G   D+ T+N LI   CK+G  +       
Sbjct: 196 TITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLA 255

Query: 182 SVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
               +  C  D+ TY  ++  ++K   I+EA  L+  +  +G  P  + Y  ++ G+ + 
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM 315

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ ++A     ++   G  P+   YT LI   G+  R  EA     EM   GL   + C+
Sbjct: 316 GRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCY 375

Query: 301 DLVTDGLKNCGK 312
             +   L   GK
Sbjct: 376 TALIRELLQTGK 387



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 3/292 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           ++ AV +  K TA  C   +  YN+LL  LC++     A  L+R+++  G  PD  TY  
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTS 61

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++      +  EA +  +EM+ +G          L++ LL  G +  A  +   M   G
Sbjct: 62  LIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHG 121

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D+ T +++I+ + K+G +   V ++ S+   GL  +   Y  LI  + KA  +D A 
Sbjct: 122 CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 181

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +L  + +    P    Y  +I G+ + G  + A  FF EM   G  P+   Y +LI+  
Sbjct: 182 EMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGF 241

Query: 273 GRGGRFVEAANYLVEMTEM-GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G    A++ L + T + G T     +  + D L    K  + E + L+E
Sbjct: 242 CKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKK--IEEAVALME 291



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 3/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G ++ A+++  K     C   V+ Y SL+  L + K    AY L + M
Sbjct: 23  TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 82

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   D   Y  L+     +GK+ +A    + M+  G  P V     ++ GL  AG +
Sbjct: 83  ALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRI 142

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A ++   M  +G   +   +++LI  +CK+ +++  +EM   + K     D  TY +L
Sbjct: 143 GAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVL 202

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA-FCFFSEMKIKG 257
           I  + K+G ++ A      ++E G KP    Y  +I G  + G  D A      E  I G
Sbjct: 203 IDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTING 262

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   YT ++    +  +  EA   + ++T  G TP    ++ + +GL   G+  L E
Sbjct: 263 CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR--LEE 320

Query: 318 KIELL 322
            I+LL
Sbjct: 321 AIDLL 325



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 131/314 (41%), Gaps = 35/314 (11%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++   T + I++   K+  ++ AV +  K TA  C   +  YN+LL  LC++     A  
Sbjct: 264 TIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 323

Query: 74  LIRRMIRKGFVPDKRTYAILVNAW-----------------------------------C 98
           L+R+++  G  PD  TY  L++                                      
Sbjct: 324 LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELL 383

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            +GK+ +A    + M+  G  P V     ++ GL  AG + +A ++   M  +G   +  
Sbjct: 384 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 443

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +++LI  +CK+ +++  +EM   + K     D  TY ILI  + K+G ++ A      +
Sbjct: 444 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 503

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G KP    Y  +I G  + G  D A   F +M       N   Y  LI+   +  + 
Sbjct: 504 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQL 563

Query: 279 VEAANYLVEMTEMG 292
            +A+ Y   M E G
Sbjct: 564 TKASLYFQHMKERG 577



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 2/228 (0%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+ EA   +++++  G  P +   + L+ GL   G LE A  ++ K++  G   D+ T+ 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           SLI+ + K        +++  +   GL  D   Y  LI  + + G I +A  +   +   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P     + +I G+ + G+   A   F  M+ +G  PN  VY+ LI    +  +   A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
              L +M +   TP +  ++++ DGL   G  + A     E+LE   +
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCK 228



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 102/221 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    L++     + +I E  + G +  A  V+   T+  C   V+  ++++  
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  + + M  +G  P++  Y+ L++  C + KM  A E L +M      P 
Sbjct: 417 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 476

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++L+ GL  +G +E+A+   ++M++ G   D+ T+N LI   CK+G  +    ++ 
Sbjct: 477 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 536

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +      A+V TY  LI  + K   + +A     ++ E G
Sbjct: 537 DMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 150/306 (49%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L     T + +I+ +GK G++  AV VF +     C+  V+ YNSL+   C+ 
Sbjct: 275 EEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKF 334

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A+  +  M ++G  P+  TY+ L++A+C +G + EA +F  +M   G  P     
Sbjct: 335 ERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTY 394

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+      G L  A ++ ++M + G  L++ T+ +L++ +C+ G +    E++ ++ K
Sbjct: 395 TSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLK 454

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   +   Y  L     KA M+++A  +L  + +   KP   LY   I G+ R+ + +D
Sbjct: 455 AGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIED 514

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           +     EM   G   N  +YT LI    + G+  EA N L EM ++G+      + ++ D
Sbjct: 515 SMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLID 574

Query: 306 GLKNCG 311
           GL   G
Sbjct: 575 GLCKIG 580



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 126/294 (42%), Gaps = 5/294 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W T  + +P    V     +++++     G+++ A + F K   F     V   N LL 
Sbjct: 170 LWSTRNVCRP-GFGVFDTLFNVLVD----LGMLEEARQCFWKMNKFRVLPKVRSCNELLH 224

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +      A +  + M+  G  P   TY +++      G +  A+   +EM  KG  P
Sbjct: 225 RLSKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRP 284

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + L+ G    G L  A  +  +M   G   D+ T+NSLI   CK   +    E  
Sbjct: 285 DIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYL 344

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           + + + GL  +V TY  LI A  KAGM+ EA +   +++  G +P    Y  +I    + 
Sbjct: 345 HGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKI 404

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           G  ++AF   SEM+  G   N   YT L+      GR  EA      + + G T
Sbjct: 405 GDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWT 458



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 144/309 (46%), Gaps = 2/309 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A ++ ++         ++ Y +LL  LCE      A  L   +
Sbjct: 393 TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGAL 452

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G+  +++ Y  L + +  +  M +A + L+EM+ K   P +      + GL     +
Sbjct: 453 LKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEI 512

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E +  ++ +M+  G   +   + +LI+   K G+    V +   +  LG+   V TY +L
Sbjct: 513 EDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVL 572

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G++ +A R   ++  +G +P   +Y  +I G+ +    ++A   F+EM  KG 
Sbjct: 573 IDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGI 632

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++ VYT LI    + G   EA +    M E+G+      +  +  G    G+  LA+ 
Sbjct: 633 SPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKS 692

Query: 319 IELLEVSLR 327
             LL+  LR
Sbjct: 693 --LLDEMLR 699



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 131/306 (42%), Gaps = 6/306 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +++ Q  + +   + K  +++ A+++  +    N +  +LLY + ++ LC       + A
Sbjct: 458 TLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMA 517

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +IR M+  G   +   Y  L++A+   GK  EA   LQEM D G    V    +L+ GL 
Sbjct: 518 VIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLC 577

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A +  + M + G   ++  + +LI+ +CK+  +E    ++  +   G+  D  
Sbjct: 578 KIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKL 637

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y  LI    K G   EA  L + +VE G +     Y  +I G  R GQ   A     EM
Sbjct: 638 VYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEM 697

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP------ISRCFDLVTDGL 307
             KG  P++ +   L+      G   EA     +M   GL        +  C   VT   
Sbjct: 698 LRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTIDITVPSCLTAVTKLH 757

Query: 308 KNCGKH 313
           K C   
Sbjct: 758 KLCASQ 763



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+    ++++L   L ++ +   A     +M +   +P  R+   L++    S K   A 
Sbjct: 177 CRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLAL 236

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            F ++M   G +P V   ++++  L   G LE+A+ +  +M  +G   D+ T+NSLI+  
Sbjct: 237 SFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGY 296

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G +   V ++  +   G   DV TY  LI    K   I +AF  LH + + G +P  
Sbjct: 297 GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNV 356

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I    + G   +A  FF +M   G  PN   YT LI    + G   EA     E
Sbjct: 357 VTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESE 416

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M + G+      +  + DGL   G+   AE++
Sbjct: 417 MQQAGVNLNIVTYTALLDGLCEDGRMREAEEL 448



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 6/246 (2%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R + R GF      +  L N     G + EA++   +M+     P VR  + L+  L  +
Sbjct: 174 RNVCRPGF----GVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKS 229

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                A      M+  G    + T+N +I  + + G++E    ++  +   GL  D+ TY
Sbjct: 230 SKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTY 289

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K GM+  A  +   + + G +P    Y  +I    +  +   AF +   MK 
Sbjct: 290 NSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  PN   Y+ LI    + G  +EA  + V+M  +GL P    +  + D   NC   DL
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDA--NCKIGDL 407

Query: 316 AEKIEL 321
            E  +L
Sbjct: 408 NEAFKL 413



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 93/218 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M    L+ +    + +I+ + K G    AV +  +      +  V+ Y  L+  LC+
Sbjct: 519 IREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCK 578

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           + L   A      M R G  P+   Y  L++  C +  + EA+    EM DKG +P    
Sbjct: 579 IGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLV 638

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G +  G    A  + N+M++ G  LDL  + SLI    + G+V+    +   + 
Sbjct: 639 YTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML 698

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           + G+  D      L+    + G I+EA  L  ++   G
Sbjct: 699 RKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRG 736



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 2/197 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   + ++  T  ++I+   K GLV  AV  F+  T    Q  +++Y +L+  LC+
Sbjct: 554 LQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCK 613

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   M+ KG  PDK  Y  L++     G   EA      M + G    +  
Sbjct: 614 NDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCA 673

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G ++ AK ++++M+++G + D      L+    + G++   + ++  + 
Sbjct: 674 YTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMA 733

Query: 185 KLGLCADVSTYKILIPA 201
           + GL +   T  I +P+
Sbjct: 734 RRGLIS--GTIDITVPS 748


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  134 bits (337), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 3/313 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   + P+   +++  F    +V  AVEV ++   +  +    ++  LL
Sbjct: 150 VWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLL 209

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A  +   M R+ F P+ R +  L+  WC  GK+ EA+E L +M + G  
Sbjct: 210 DALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 268

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVE 178
           P +     L+ G  +AG +  A  ++N M K+GF  ++  +  LI+ +C++ + ++  + 
Sbjct: 269 PDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR 328

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  + + G  AD+ TY  LI    K GMID+ + +L ++ + G  P    Y  I+    
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHE 388

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++ QF++      +MK +G  P+  +Y ++I +  + G   EA     EM   GL+P   
Sbjct: 389 KKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVD 448

Query: 299 CFDLVTDGLKNCG 311
            F ++ +G  + G
Sbjct: 449 TFVIMINGFTSQG 461



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 12/238 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ Y       T + +I  F K G++D    V +           + Y  ++ A  + + 
Sbjct: 333 MERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQ 392

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     LI +M R+G  PD   Y +++   C  G+++EA     EM   G +P V    +
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--TFNSLIETICKSGEVEF------CVEM 179
           ++ G  + G+L  A     +M+ +G     +  T  SL+  + +  ++E       C+  
Sbjct: 453 MINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISN 512

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             S C+L    +VS + I I A+   G + EA     +++E    P P+ YA ++KG+
Sbjct: 513 KTSSCEL----NVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKGL 566



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +L+   + A M+ +A  +L  + + G +P   ++  ++  + + G   +A   F +M+ K
Sbjct: 172 VLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK 231

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PPN   +T L+    R G+ +EA   LV+M E GL P    F  +  G  + GK
Sbjct: 232 -FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 147/295 (49%), Gaps = 4/295 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G +D A+++F+          V+ YN+L+   C+      A  +++RM
Sbjct: 122 TYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRM 181

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA-GY 137
           + +  VPD  TY  LVN  C +G++ EA+  +    DKGF+P V     L+ GL      
Sbjct: 182 VSESLVPDVVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRR 238

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LESA+Q++ KM+  G   D+ ++N+LI  + +   V   ++++ SV + G   +V TY I
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + K   ++EAF L   LV+ G +P    Y   I G+ + G+ +DA     +M  KG
Sbjct: 299 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 358

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             P+   +  +I    +  R  EA   L  M   G +P +  F+ +  G    GK
Sbjct: 359 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 413



 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 139/296 (46%), Gaps = 4/296 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++ I    +   + +A  VF+           + YN+LL  LC       A AL  R
Sbjct: 51  STFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYER 110

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI+ G+ PD  TY  L++ +C  GK+ EA +       +GF P V   + L+ G   A  
Sbjct: 111 MIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK 170

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A++++ +M+ +  V D+ T+NSL+  +CK+G V+   E    +   G   +V TY  
Sbjct: 171 LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVD---EARMLIVDKGFSPNVITYST 227

Query: 198 LIPAVSKA-GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           LI  + +    ++ A +LL  +V +G KP    Y  +I G+ R     +A   F  +  +
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ 287

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           G+ P  P Y +LI    +  R  EA      + + GL P +  + +  DGL   G+
Sbjct: 288 GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR 343



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 149/310 (48%), Gaps = 9/310 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K   V+ A E+F+       +   + Y   +  LC+      A  +++ M
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG VPD  ++  ++N  C   ++ EA+  L  M  KG +P     + L+ G   AG  
Sbjct: 355 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS---GEVEFCVEMYYSVCKLGLCADVSTY 195
           + A     +M+K+G    + T+N L++ +CK+   G ++  + ++ ++ + G   DV TY
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTY 474

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + KAG +D+A RLL  +   G  P    Y  +I G+    + D+A   F  M  
Sbjct: 475 SALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVE 534

Query: 256 KGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKH 313
           KG  P+   Y T++  +C +    V+ A  L + + E G+ P S  +  + DGL  C   
Sbjct: 535 KGCVPDTITYGTIISALCKQ--EMVDKALALFDGSLEAGVVPTSGMYFSLIDGL--CAVA 590

Query: 314 DLAEKIELLE 323
            + E ++LL+
Sbjct: 591 RVDEALKLLQ 600



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 133/271 (49%), Gaps = 7/271 (2%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           LL +L +      A+  + +++ KG   D  T+ I ++  C + ++ +AQ     M   G
Sbjct: 22  LLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASRIGDAQTVFDGMRKHG 80

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P     + L+ GL N G +  A+ +  +MIK G+  D+ T+N+L+   CK G+++  +
Sbjct: 81  FWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEAL 140

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +++    K G   DV TY  LI    KA  +DEA R+L  +V +   P    Y  ++ G+
Sbjct: 141 KIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGL 200

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPI 296
            + G+ D+A     +   KG  PN   Y+ LI+   R  R +E+A  L+E M   G  P 
Sbjct: 201 CKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
              ++ +  GL    +  ++E ++L    LR
Sbjct: 258 IVSYNALIHGLAR--EQGVSEALKLFGSVLR 286



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 149/335 (44%), Gaps = 42/335 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP------- 85
           +++A ++  K     C+  ++ YN+L+  L   +    A  L   ++R+G+ P       
Sbjct: 239 LESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNI 298

Query: 86  ----------------------------DKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
                                       D  TY + ++  C +G++ +A   L++M +KG
Sbjct: 299 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 358

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + ++ GL     ++ A+ +++ M  +G   +  +FN+LI   C++G+ +  +
Sbjct: 359 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAM 418

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKA---GMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +  + K G+   V TY IL+  + KA   G I EA  L   ++E G  P    Y+ +I
Sbjct: 419 TTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALI 478

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGL 293
            G+ + G+ DDA      M+ KG  PN   Y  LI+ +CG   +  EA    V M E G 
Sbjct: 479 DGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGL-DKVDEALELFVAMVEKGC 537

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            P +  +  +   L  C +  + + + L + SL +
Sbjct: 538 VPDTITYGTIISAL--CKQEMVDKALALFDGSLEA 570


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 3/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ + K G VD A+EV        CQ     YNSL++ L + K  H A AL+ +M
Sbjct: 464 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 523

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G +P+  TY  L+   C       A    + M   G  P      +L   L  AG  
Sbjct: 524 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRA 583

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A   +   +++G  L    + +LI+   K+G  +F   +   +   G   D  TY +L
Sbjct: 584 EEAYSFI---VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 640

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +   G K     Y  +I  M R G+ D A   ++EM   GH
Sbjct: 641 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   YT+ I    + GR  +A + +++M   G+ P    ++++ DG  + G  D A
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 758



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 154/377 (40%), Gaps = 58/377 (15%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLF 60
           ++  E+M+   L       +++ +   K G  + A   +  K  A       + Y +L+ 
Sbjct: 552 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALT----KVYYTTLID 607

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +      A  LI RMI +G  PD  TY++L++A C   ++ EA   L +MS +G   
Sbjct: 608 GFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC 667

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    +L+  +L  G  + AK+M N+M   G      T+   I + CK G +E   ++ 
Sbjct: 668 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 727

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAF---------------------------- 212
             + + G+  DV TY ILI      G ID AF                            
Sbjct: 728 LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKG 787

Query: 213 -----------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                                  +LL  +V+ G  P  + Y+ +I G  + G+ ++A   
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 847

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  KG  PN  +YT+LI  C     F +A +++  M+E G  P    + L+  GL N
Sbjct: 848 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 907

Query: 310 CGKHDLAEKI--ELLEV 324
            G  +  + +  +LLE+
Sbjct: 908 EGDFEKVKSLFCDLLEL 924



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 1/310 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +MK    S + +  + +I    K G V +A  +F+          V+ YN+++    ++ 
Sbjct: 278 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 337

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A  +   M + G  PD  TY  L+   C   K  EA+E L     +GF P V    
Sbjct: 338 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 396

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   A   + A +M NKM+     LDL+ F  LI ++ K   ++   E+   +   
Sbjct: 397 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 456

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  +V TY  +I    K+G +D A  +L  +  DG +P    Y  ++ G+ +  +   A
Sbjct: 457 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 516

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++M+  G  PN   YT L+        F  A      M + GL P    + ++TD 
Sbjct: 517 MALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 576

Query: 307 LKNCGKHDLA 316
           L   G+ + A
Sbjct: 577 LCKAGRAEEA 586



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 42/350 (12%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I  + K G +++A+++        C      YN+L++ LC+ K    A  L+
Sbjct: 322 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELL 380

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGK--------------------------------- 102
              +++GF P   T+  L+N +C + K                                 
Sbjct: 381 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 440

Query: 103 --MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
             ++EA+E L E+S  G  P V     ++ G   +G ++ A +++  M + G   +  T+
Sbjct: 441 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           NSL+  + K  ++   + +   + K G+  +V TY  L+         D AFRL   + +
Sbjct: 501 NSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 560

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           +G KP    YA +   + + G+ ++A+ F      KG    +  YT LI    + G    
Sbjct: 561 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDF 617

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           AA  +  M + G TP S  + ++   L  C +  L E + +L ++SLR +
Sbjct: 618 AATLIERMIDEGCTPDSYTYSVLLHAL--CKQKRLNEALPILDQMSLRGI 665



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 16/327 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M     +    T S+++    K   ++ A+ + ++ +    +  +  Y  L+  +  
Sbjct: 622 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 681

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   M   G  P   TY + +N++C  G++ +A++ + +M  +G  P V  
Sbjct: 682 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 741

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------- 171
            ++L+ G  + GY++ A   + +M+      +  T+  L++ + K               
Sbjct: 742 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 801

Query: 172 ---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
              E++   ++   + K GL   V+TY  LI    KAG ++EA  LL ++   G  P   
Sbjct: 802 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 861

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y  +IK       F+ A  F S M   G  P    Y +L+      G F +  +   ++
Sbjct: 862 IYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDL 921

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDL 315
            E+G       + ++ DGL   G  D+
Sbjct: 922 LELGYNHDEVAWKILNDGLLKAGYVDI 948



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 139/350 (39%), Gaps = 46/350 (13%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P+T +   ++  + + G +  A  +F       CQ+    Y  L+  LCE K    A 
Sbjct: 214 LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREAL 273

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M R G  P+ R +  L++  C SG++ +A+     M   G  P V   + ++ G 
Sbjct: 274 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 133 LNAGYL----------------------------------ESAKQMVNKMIKQGFVLDLE 158
              G +                                  E A++++N  +K+GF   + 
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 393

Query: 159 TFNSLIETICKSGEVEFCV----EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           TF +LI   C + + +  +    +M  S CKL    D+  +  LI ++ K   + EA  L
Sbjct: 394 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKL----DLQVFGKLINSLIKKDRLKEAKEL 449

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L+ +  +G  P    Y  II G  + G+ D A      M+  G  PN   Y  L+    +
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 509

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +  +A   L +M + G+ P    +  +  G   C +HD      L E+
Sbjct: 510 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQG--QCDEHDFDNAFRLFEM 557



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 142/346 (41%), Gaps = 35/346 (10%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L++SP+  +  +    +  + +    V+++          + YN+++ + C+      A+
Sbjct: 144 LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 203

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              R ++  G  P+  T   LV  +C +G++R+A      M   G         +L+QGL
Sbjct: 204 RCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 263

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  +  A  +   M + G   ++  F  LI  +CKSG V     ++ ++ + G+   V
Sbjct: 264 CEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSV 323

Query: 193 STYKILIPAVSKAGMIDEAFR----------------------------------LLHNL 218
            TY  +I   SK G +++A +                                  LL+N 
Sbjct: 324 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNA 383

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V++G  P    +  +I G     +FDDA    ++M       +  V+  LI    +  R 
Sbjct: 384 VKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRL 443

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIELLE 323
            EA   L E++  GL P    +  + DG    GK D+A E ++++E
Sbjct: 444 KEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 18/219 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-----CVLLYNSLLFALCEVKL 67
           V+P   T +++I+  G  G +D A     +    +C+      C+LL + L   L  V+ 
Sbjct: 735 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 794

Query: 68  FHGA-----------YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              +           + L+ RM++ G  P   TY+ L+  +C +G++ EA   L  M  K
Sbjct: 795 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 854

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P      LL++   +  + E A   V+ M + GF   LE++  L+  +C  G+ E  
Sbjct: 855 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKV 914

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             ++  + +LG   D   +KIL   + KAG +D  F++L
Sbjct: 915 KSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL   + L          +E   KHGL                   V  Y+SL+ 
Sbjct: 800 MWNLIELDITWQL----------LERMVKHGL----------------NPTVTTYSSLIA 833

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+  M  KG  P++  Y +L+   C +    +A  F+  MS+ GF P
Sbjct: 834 GFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP 893

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    LLV GL N G  E  K +   +++ G+  D   +  L + + K+G V+ C +M 
Sbjct: 894 QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 953

Query: 181 YSVCKLGLCADVSTYKIL 198
             + K   C    TY ++
Sbjct: 954 SIMEKRYCCISSQTYALV 971


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 142/289 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A++  N   ++ CQ  V+ +N +L ++C    +  A  L+  M
Sbjct: 288 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 347

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C  G +  A + L++M   G  P     + L+ G      +
Sbjct: 348 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 407

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + ++ M+ +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 408 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 467

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G  + A +LL  +   G KP    Y+ ++ G+ R G+ D+A  FF +++  G 
Sbjct: 468 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 527

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  ++    +  +   A ++L  M      P    + ++ +G+
Sbjct: 528 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 576



 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 3/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G +DNA++V ++    N    V+ YN++L  LC+      A  ++ R 
Sbjct: 186 TYNVLISGYCKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 242

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++K   PD  TY IL+ A C    + +A + L EM +KG  P V   ++L+ G+   G L
Sbjct: 243 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 302

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G      ++   + + G    V T+ IL
Sbjct: 303 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNIL 362

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G++  A  +L  +   G  P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 363 INFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 422

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+T   + G+   A   L +++  G +P+   ++ V DGL   GK + A K
Sbjct: 423 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 482

Query: 319 I 319
           +
Sbjct: 483 L 483



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 35/347 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++++   N++    T + I+      G +  A+EV ++     C   V+ Y  L+ A C+
Sbjct: 204 LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK 263

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M  KG  PD  TY +L+N  C  G++ EA +FL  M   G  P V  
Sbjct: 264 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 323

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE------ 178
            +++++ + + G    A+++++ M+++G    + TFN LI  +C+ G +   ++      
Sbjct: 324 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 383

Query: 179 -------------MYYSVCK----------------LGLCADVSTYKILIPAVSKAGMID 209
                        + +  CK                 G   D+ TY  L+ A+ K G +D
Sbjct: 384 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 443

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  +L+ L   G  P    Y  +I G+ + G+ + A     EM+ KG  P+   Y+ L+
Sbjct: 444 VAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 503

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +   R G+  EA  +  ++  +G+ P +  ++ +  GL    + D A
Sbjct: 504 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 550



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 133/268 (49%), Gaps = 5/268 (1%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C +     A  ++  + + G VPD  TY +L++ +C SG++  A + L  M+  
Sbjct: 154 SLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN-- 211

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
              P V   + +++ L ++G L+ A +++++ +++    D+ T+  LIE  CK   V   
Sbjct: 212 -VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQA 270

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++   +   G   DV TY +LI  + K G +DEA + L+N+   G +P    +  I++ 
Sbjct: 271 MKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRS 330

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           M   G++ DA    S+M  KG  P+   + +LI    R G    A + L +M   G TP 
Sbjct: 331 MCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           S  ++ +  G   C +  +   IE L++
Sbjct: 391 SLSYNPLLHGF--CKEKKMDRAIEYLDI 416



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 36/257 (14%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ +  +FL+ M  +G  P +     L++G    G  + A  ++  + + G V D+ T
Sbjct: 127 NGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVIT 186

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N LI   CKSGE++  +++            Y+     LC                   
Sbjct: 187 YNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 246

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY ILI A  K   + +A +LL  +   G KP    Y  +I G+ + G+ D+A 
Sbjct: 247 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAI 306

Query: 248 CFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            F + M   G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + 
Sbjct: 307 KFLNNMPSYGCQPNVITHNIILRSMCST-GRWMDAEKLLSDMLRKGCSPSVVTFNILINF 365

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C +  L   I++LE
Sbjct: 366 L--CRQGLLGRAIDILE 380



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 428 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  TY+ LV+     GK+ EA +F  ++   G  P     + ++ GL  +   
Sbjct: 488 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  MI +       T+  LIE I   G  +  +++   +C  GL    S  ++ 
Sbjct: 548 DRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVA 607

Query: 199 I 199
           +
Sbjct: 608 V 608



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 5/191 (2%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M+ +G + D+    SLI   C+ G+ +    +   + + G   D
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY +LI    K+G ID A ++L  +      P    Y  I++ +   G+   A     
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 240

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
               K   P+   YT+LI    +     +A   L EM   G  P    ++++ +G+  C 
Sbjct: 241 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI--CK 298

Query: 312 KHDLAEKIELL 322
           +  L E I+ L
Sbjct: 299 EGRLDEAIKFL 309


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 136/287 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F +   V  A +VF +      Q  V+ YNSL+  LC       A  L  +M
Sbjct: 301 TFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKM 360

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY  L+N +C    ++EA+E L ++  +G  P V   + L+     AG +
Sbjct: 361 SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRM 420

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + M+  G   ++ T+N LI   C+ G V+   ++   +   GL AD+ TY IL
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G   +A RLL  + E G  P    Y  +I G FR G    A    + M+ KG 
Sbjct: 481 VDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
             N   Y +LI      G+  EA   L EM E GL P    +D++ D
Sbjct: 541 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRD 587



 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 146/310 (47%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + V+  T  ++I    K G    A +V     A+     V+ YN+++   C+      A 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL++ M+ K   P++ T+ IL++ +C    +  A++  +EM  +G  P V   + L+ GL
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G L+ A  + +KM   G   ++ T+N+LI   CK   ++   EM   + K GL  +V
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI A  KAG +D+AF L   +++ G  P  S Y  +I G  R G   +A     E
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+  G   +   Y +L+    + G   +A   L EM E+GL P    ++ + DG    G 
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGN 524

Query: 313 HDLAEKIELL 322
              A  +  L
Sbjct: 525 STAALNVRTL 534



 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 9/312 (2%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAV-EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           LS +P  +SL+ E  G+ G+V++   E+  +    N    V+ ++ ++  LC+V  F  A
Sbjct: 195 LSCNPMLVSLVKE--GRIGVVESVYKEMIRRRIGVN----VVTFDVVINGLCKVGKFQKA 248

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++  M   GF P   TY  +++ +C +GKM +A   L+EM  K  +P     ++L+ G
Sbjct: 249 GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDG 308

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
                 + +AK++  +M +QG   ++ T+NSLI  +C +G+++  + +   +  +GL  +
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI    K  M+ EA  +L ++ + G  P    +  +I    + G+ DDAF   S
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M   G  PN   Y  LI    R G   EA     EM   GL      ++++ D L  C 
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDAL--CK 486

Query: 312 KHDLAEKIELLE 323
           K +  + + LL+
Sbjct: 487 KGETRKAVRLLD 498



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 127/266 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M+   L  +  T + +I     +G +D A+ + +K +    +  V+ YN+L+   
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ K+   A  ++  + ++G  P+  T+  L++A+  +G+M +A      M D G  P V
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G    G ++ A+++  +M   G   DL T+N L++ +CK GE    V +   
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++GL     TY  LI    + G    A  +   + + G +     Y  +IKG   +G+
Sbjct: 500 MFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGK 559

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTML 268
            ++A    +EM  KG  PNR  Y +L
Sbjct: 560 LEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 131/276 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           + +++  + K+G +D A+E F++   +  +   L  N +L +L +        ++ + MI
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+    +  T+ +++N  C  GK ++A + +++M   GF+P V   + ++ G   AG + 
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMF 281

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +M+ +    +  TFN LI+  C+   V    +++  + + GL  +V TY  LI
Sbjct: 282 KADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLI 341

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +   G +DEA  L   +   G KP    Y  +I G  ++    +A     ++  +G  
Sbjct: 342 NGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA 401

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           PN   +  LI   G+ GR  +A      M + G+ P
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 92/200 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +GK G +D+A  + +          V  YN L+   C       A  L + M
Sbjct: 406 TFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEM 465

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D  TY ILV+A C  G+ R+A   L EM + G NP     + L+ G    G  
Sbjct: 466 EGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNS 525

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  +   M K+G   ++ T+N LI+  C  G++E    +   + + GL  + +TY IL
Sbjct: 526 TAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585

Query: 199 IPAVSKAGMIDEAFRLLHNL 218
              + + G I +    L+N+
Sbjct: 586 RDEMMEKGFIPDIDGHLYNV 605



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ S  T + +I+ + + G    A+ V         +  ++ YN L+   C       A 
Sbjct: 505 LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEAN 564

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            L+  M+ KG +P++ TY IL +                EM +KGF P + G
Sbjct: 565 RLLNEMLEKGLIPNRTTYDILRD----------------EMMEKGFIPDIDG 600


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 142/289 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A++  N   ++ CQ  V+ +N +L ++C    +  A  L+  M
Sbjct: 231 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 290

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C  G +  A + L++M   G  P     + L+ G      +
Sbjct: 291 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 350

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + ++ M+ +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 351 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 410

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G  + A +LL  +   G KP    Y+ ++ G+ R G+ D+A  FF +++  G 
Sbjct: 411 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 470

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  ++    +  +   A ++L  M      P    + ++ +G+
Sbjct: 471 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 519



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 3/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G +DNA++V ++    N    V+ YN++L  LC+      A  ++ R 
Sbjct: 129 TYNVLISGYCKSGEIDNALQVLDR---MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQ 185

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++K   PD  TY IL+ A C    + +A + L EM +KG  P V   ++L+ G+   G L
Sbjct: 186 LQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRL 245

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G      ++   + + G    V T+ IL
Sbjct: 246 DEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNIL 305

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G++  A  +L  +   G  P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 306 INFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 365

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+T   + G+   A   L +++  G +P+   ++ V DGL   GK + A K
Sbjct: 366 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 425

Query: 319 I 319
           +
Sbjct: 426 L 426



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 154/347 (44%), Gaps = 35/347 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++++   N++    T + I+      G +  A+EV ++     C   V+ Y  L+ A C+
Sbjct: 147 LQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK 206

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M  KG  PD  TY +L+N  C  G++ EA +FL  M   G  P V  
Sbjct: 207 ESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVIT 266

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE------ 178
            +++++ + + G    A+++++ M+++G    + TFN LI  +C+ G +   ++      
Sbjct: 267 HNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 326

Query: 179 -------------MYYSVCK----------------LGLCADVSTYKILIPAVSKAGMID 209
                        + +  CK                 G   D+ TY  L+ A+ K G +D
Sbjct: 327 MHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVD 386

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  +L+ L   G  P    Y  +I G+ + G+ + A     EM+ KG  P+   Y+ L+
Sbjct: 387 VAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLV 446

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +   R G+  EA  +  ++  +G+ P +  ++ +  GL    + D A
Sbjct: 447 SGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 493



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 133/269 (49%), Gaps = 5/269 (1%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
            SL+   C +     A  ++  + + G VPD  TY +L++ +C SG++  A + L  M+ 
Sbjct: 96  TSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN- 154

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
               P V   + +++ L ++G L+ A +++++ +++    D+ T+  LIE  CK   V  
Sbjct: 155 --VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQ 212

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            +++   +   G   DV TY +LI  + K G +DEA + L+N+   G +P    +  I++
Sbjct: 213 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 272

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            M   G++ DA    S+M  KG  P+   + +LI    R G    A + L +M   G TP
Sbjct: 273 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 332

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            S  ++ +  G   C +  +   IE L++
Sbjct: 333 NSLSYNPLLHGF--CKEKKMDRAIEYLDI 359



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 117/257 (45%), Gaps = 36/257 (14%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ +  +FL+ M  +G  P +     L++G    G  + A  ++  + + G V D+ T
Sbjct: 70  NGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVIT 129

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N LI   CKSGE++  +++            Y+     LC                   
Sbjct: 130 YNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE 189

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY ILI A  K   + +A +LL  +   G KP    Y  +I G+ + G+ D+A 
Sbjct: 190 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAI 249

Query: 248 CFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            F + M   G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + 
Sbjct: 250 KFLNNMPSYGCQPNVITHNIILRSMCST-GRWMDAEKLLSDMLRKGCSPSVVTFNILINF 308

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C +  L   I++LE
Sbjct: 309 L--CRQGLLGRAIDILE 323



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 84/181 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 371 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 430

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  TY+ LV+     GK+ EA +F  ++   G  P     + ++ GL  +   
Sbjct: 431 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 490

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  MI +       T+  LIE I   G  +  +++   +C  GL    S  ++ 
Sbjct: 491 DRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVA 550

Query: 199 I 199
           +
Sbjct: 551 V 551



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 5/191 (2%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M+ +G + D+    SLI   C+ G+ +    +   + + G   D
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY +LI    K+G ID A ++L  +      P    Y  I++ +   G+   A     
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
               K   P+   YT+LI    +     +A   L EM   G  P    ++++ +G+  C 
Sbjct: 184 RQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGI--CK 241

Query: 312 KHDLAEKIELL 322
           +  L E I+ L
Sbjct: 242 EGRLDEAIKFL 252


>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
 gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 453

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 136/269 (50%), Gaps = 1/269 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I  M+   +  SP+T +++ E +   G  D AV++F       C Q +  +N++L 
Sbjct: 110 VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILD 169

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY L R  +R  F  D  TY +++N WC   +  +A E L+EM ++G NP
Sbjct: 170 VLCKSKRVEKAYELFR-ALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINP 228

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +++G   AG +  A +   +M K+   +D+ T+ +++     +GE++    ++
Sbjct: 229 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 288

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+   V+TY  +I  + K   ++ A  +   +V  G++P  + Y  +I+G+F  
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 348

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           G+F         M+ +G  PN   Y M+I
Sbjct: 349 GEFSRGEELMQRMENEGCEPNFQTYNMMI 377


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  134 bits (337), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 157/308 (50%), Gaps = 2/308 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I  F   G + +A+++FNK    N +  V  +N L+   C+        
Sbjct: 228 ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 287

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+++G  P+  TY  L++ +C   ++ +A+  L  MS +G NP ++  ++L+ G 
Sbjct: 288 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A  +  +M  +  + D+ T+NSLI+ +CK G++ + +++   +   G+  D+
Sbjct: 348 CKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDI 407

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K   +D+A  LL  L + G +P    Y  +I G+ + G+ +DA   F +
Sbjct: 408 ITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFED 467

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KG+      YT++I      G F EA   L +M +    P +  ++++   L +  +
Sbjct: 468 LLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDE 527

Query: 313 HDLAEKIE 320
           +D AEK+ 
Sbjct: 528 NDKAEKLR 535



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 132/258 (51%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T +++++ F K G +     VF        +  V+ Y SL+   C VK  + A
Sbjct: 262 NIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKA 321

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +++  M ++G  PD ++Y IL++ +C   K+ EA    +EM  K   P V   + L+ G
Sbjct: 322 KSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDG 381

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G +  A ++V++M  +G   D+ T++S+++ +CK+ +V+  + +   +   G+  +
Sbjct: 382 LCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPN 441

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY ILI  + K G +++A  +  +L+  G+    + Y  +I G   +G FD+A    S
Sbjct: 442 MYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLS 501

Query: 252 EMKIKGHPPNRPVYTMLI 269
           +MK     P+   Y ++I
Sbjct: 502 KMKDNSCIPDAVTYEIII 519



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 142/297 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++  +      Q  V++Y++++  +C+ K  + A+ L   M+ KG
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L++ + + G++++A +   +M  +   P V   ++LV G    G ++  K
Sbjct: 228 ISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 287

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   M+KQG   ++ T+ SL++  C   EV     + Y++ + G+  D+ +Y ILI   
Sbjct: 288 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +DEA  L   +      P    Y  +I G+ + G+   A     EM  +G PP+ 
Sbjct: 348 CKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDI 407

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y+ ++    +  +  +A   L ++ + G+ P    + ++ DGL   G+ + A  I
Sbjct: 408 ITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 464



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G +  A+   +   A   Q   + Y +L+  LC+V     A  L+RR+
Sbjct: 129 TFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRV 188

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P+   Y+ +++  C    + +A +   EM  KG +P V     L+ G    G L
Sbjct: 189 DGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQL 248

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NKMI +    D+ TFN L++  CK G+++    ++  + K G+  +V TY  L
Sbjct: 249 KDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSL 308

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +++A  +L+ + + G  P    Y  +I G  +  + D+A   F EM  K  
Sbjct: 309 MDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    + G+   A   + EM + G+ P    +  + D L  C  H + + 
Sbjct: 369 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDAL--CKNHQVDKA 426

Query: 319 IELL 322
           I LL
Sbjct: 427 IALL 430



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 116/268 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + + +L+  LC     H A      ++  GF  D+  Y  L++  C  G+ R A + L+
Sbjct: 127 TITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLR 186

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +      P V     ++ G+    ++  A  + ++M+ +G   ++ T+++LI      G
Sbjct: 187 RVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVG 246

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++  ++++  +    +  DV T+ IL+    K G + E   +   +++ G KP    Y 
Sbjct: 247 QLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC 306

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G     + + A      M  +G  P+   Y +LI    +  +  EA N   EM   
Sbjct: 307 SLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHK 366

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + P    ++ + DGL   GK   A K+
Sbjct: 367 HIIPDVVTYNSLIDGLCKLGKISYALKL 394



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 120/286 (41%), Gaps = 19/286 (6%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S I   F  +  V +A  +F++    N     + +N +L +L + K +H   +L ++M  
Sbjct: 45  SSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEF 104

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  P                 +   Q   Q M   G++P       L++GL   G +  
Sbjct: 105 EGINP----------------VLFHFQHPHQLM---GYHPNTITFTTLIKGLCLKGQIHQ 145

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A    + ++  GF LD   + +LI  +CK GE    +++   V    +  +V  Y  +I 
Sbjct: 146 ALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIID 205

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K   +++AF L   +V  G  P    Y+ +I G F  GQ  DA   F++M ++   P
Sbjct: 206 GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKP 265

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +   + +L+    + G+  E       M + G+ P    +  + DG
Sbjct: 266 DVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 311



 Score = 40.8 bits (94), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +++A  +F           V  Y  ++   C   LF  A AL+ +M
Sbjct: 444 TYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKM 503

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
                +PD  TY I++ +     +  +A++ L+EM  +G 
Sbjct: 504 KDNSCIPDAVTYEIIIRSLFDKDENDKAEK-LREMITRGL 542


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 134/294 (45%), Gaps = 3/294 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+ + K G+V  A+EVF       C      Y SL++ L + K  H A ALI +M   G
Sbjct: 464 IIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDG 523

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P    Y  L+   C   +   A    + M   G  P  +  ++L   L  +G  E A 
Sbjct: 524 ITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAY 583

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                ++++G VL   T+ SL++   K+G  +F   +   +   G  AD+ TY +L+ A+
Sbjct: 584 SF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   ++EA  +L  +   G K     Y  II  M + G+ D A   F+EM   GH P+ 
Sbjct: 641 CKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSA 700

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             YT+ I+   + G+  EA + + EM   G+TP    + +  +G  + G  D A
Sbjct: 701 TTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRA 754



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 137/301 (45%), Gaps = 4/301 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+ + K G + +A+ +        C      YNSL++ LC  KL   A  L+
Sbjct: 318 SVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKL-DEAEELL 376

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
              I +GF P   T+  L+N +C + ++ +A      M        ++   +L+  L+  
Sbjct: 377 NGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKK 436

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L+ AK+ +N+M   G   ++  + S+I+  CK G V   +E++  +   G   +  TY
Sbjct: 437 CRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTY 496

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + +   + +A  L+  + EDG  P    Y  +I+G  ++ +FD+AF  F  M+ 
Sbjct: 497 GSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEK 556

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y +L     + GR  EA ++LV     G+      +  + DG    G  D 
Sbjct: 557 NGLTPDEQAYNVLTDALCKSGRAEEAYSFLV---RKGVVLTKVTYTSLVDGFSKAGNTDF 613

Query: 316 A 316
           A
Sbjct: 614 A 614



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 129/301 (42%), Gaps = 19/301 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++   K   ++ A+ + ++ T    +  ++ Y  ++  + +      A +L   M
Sbjct: 632 TYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEM 691

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G  P   TY + ++++C  G++ EA+  + EM   G  P V    + + G  + GY+
Sbjct: 692 ISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYM 751

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   + +M+      +  T+  L++   K                    + ++ + I 
Sbjct: 752 DRAFSTLKRMVDASCEPNCWTYWLLLKHFLKM-------------------SLINAHYID 792

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              +     ++  ++LL  +++ G  P    Y+ II G  +  + ++A      M  K  
Sbjct: 793 TSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAI 852

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +YTMLI  C     F +  +++ +M E G  P    +  +  GL + G +D A+ 
Sbjct: 853 SPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRAKS 912

Query: 319 I 319
           +
Sbjct: 913 L 913



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 1/251 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL   C       A  L+  M   G   ++ +Y IL+     +  +REA   +  M  
Sbjct: 218 NALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQ 277

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G +  +    LL++GL   G +  A+ ++++M  +G V  + T+N++I+  CKSG ++ 
Sbjct: 278 DGCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKD 337

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + +   + + G   D  TY  LI  +   G +DEA  LL+  +  G  P    +  +I 
Sbjct: 338 ALGIKALMEQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLIN 396

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  +  + DDA    S M       +   Y +LI +  +  R  EA   L EM   GL P
Sbjct: 397 GYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAP 456

Query: 296 ISRCFDLVTDG 306
               +  + DG
Sbjct: 457 NVVIYTSIIDG 467



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 36/265 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  L +L    +      L   ++++G +PD  TY  ++ A+C  G +  A  +   + 
Sbjct: 147 YNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLR 206

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G                                     +D  T N+L+   C++ ++ 
Sbjct: 207 ESGMQ-----------------------------------MDTYTCNALLLGYCRTSDLR 231

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +  +G   +  +Y ILI  + +A  + EA  L+  +V+DG      +Y  +I
Sbjct: 232 KACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLI 291

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG+ + G+  DA     EM ++G  P+   Y  +I    + GR  +A      M + G  
Sbjct: 292 KGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCN 351

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    ++ +  GL   GK D AE++
Sbjct: 352 PDDWTYNSLIYGLCG-GKLDEAEEL 375



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 26/205 (12%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL           T+  ++E   KHGL                   V+ Y+S++ 
Sbjct: 796 MWNWIEL----------NTVWQLLERMMKHGL----------------NPTVVTYSSIIA 829

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+  M+ K   P++  Y +L+   C      +   F+ +M + GF P
Sbjct: 830 GFCKATRLEEACVLLDHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQP 889

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+ GL + G  + AK +   ++   +  +   +  L + + K+G V+FC ++ 
Sbjct: 890 QLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLL 949

Query: 181 YSVCKLGLCADVSTYKILIPAVSKA 205
            ++       D  +Y +L  ++ +A
Sbjct: 950 AAMDNRHCRIDSESYSMLTDSIREA 974



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 18/219 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T  + I   G  G +D A     +    +C+     Y  LL    ++ L +  Y
Sbjct: 731 VTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHY 790

Query: 73  ----------------ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
                            L+ RM++ G  P   TY+ ++  +C + ++ EA   L  M  K
Sbjct: 791 IDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGK 850

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
             +P      +L++   +          V  MI+ GF   LE+++ LI  +C  G+ +  
Sbjct: 851 AISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGDYDRA 910

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             ++  +  +    +   +KIL   + KAG +D   +LL
Sbjct: 911 KSLFCDLLGMDYNHNEVAWKILNDGLLKAGHVDFCSQLL 949


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 151/331 (45%), Gaps = 4/331 (1%)

Query: 3   KTIELMKPYNLSVSPQ---TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + I L K Y +  SP    T +++I    + G VD A EVF    +F C   V+ YN+L+
Sbjct: 161 EAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLI 220

Query: 60  FALCEVKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             LC+         L + +  R    PD  TY  +++ +C SGKM+EA    +EM   G 
Sbjct: 221 NGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGI 280

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   ++L+ G    G +  A+ M  KM       D+ TF SLI+  C++G+V   ++
Sbjct: 281 QPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLK 340

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            +  +    +   V TY +LI A+ K   ++EA   L  +      P P +Y P+I G  
Sbjct: 341 FWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFC 400

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           + G  D+      EM+ K   P++  +T+LI      GR  EA N    M      P + 
Sbjct: 401 KAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNI 460

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
             + +   L   G  + A +I  + +  R++
Sbjct: 461 TVNSLISCLLKAGMPNEAYRIRKMALEDRNL 491



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 115/263 (43%), Gaps = 1/263 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
            +YN+LL  L +    H A  L +  +     PD  T+ IL+   C  G +  A E  ++
Sbjct: 144 FVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKD 203

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSG 171
           M   G  P V   + L+ GL  A  ++   ++  ++  +     D+ T+ S+I   CKSG
Sbjct: 204 MESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSG 263

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++    ++  + + G+  +V T+ +LI    K G I EA  +   +           + 
Sbjct: 264 KMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFT 323

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  R GQ +    F++ MK +   P    Y +LI    +  R  EA ++L ++   
Sbjct: 324 SLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNS 383

Query: 292 GLTPISRCFDLVTDGLKNCGKHD 314
            + P    ++ V DG    G  D
Sbjct: 384 SIIPKPFMYNPVIDGFCKAGNVD 406



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 103/272 (37%), Gaps = 9/272 (3%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
            N   C   YN L+ +LC++        +   M   G +PD +    LV     +     
Sbjct: 67  LNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDM 126

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL----DLETFN 161
            ++ L E+  K     VR    +   LL+    ++       + K+  V+    D  TFN
Sbjct: 127 VKKLLAEVQGK----EVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFN 182

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            LI  +C+ G V+   E++  +   G   DV TY  LI  + KA  +     L   +   
Sbjct: 183 ILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSR 242

Query: 222 GH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
               P    Y  II G  + G+  +A   F EM   G  PN   + +LI   G+ G   E
Sbjct: 243 SDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAE 302

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           A     +M     +     F  + DG    G+
Sbjct: 303 AEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQ 334



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 1/232 (0%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+ + C  G           M   G  P  +    LV  +  A   +  K+++ ++
Sbjct: 75  TYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEV 134

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +   ++   +N+L+  + K  +V   + ++     +    D  T+ ILI  + + G +
Sbjct: 135 QGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGV 194

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTM 267
           D AF +  ++   G  P    Y  +I G+ +  +       F E++ +    P+   YT 
Sbjct: 195 DRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTS 254

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +I+   + G+  EA+N   EM   G+ P    F+++ DG    G    AE +
Sbjct: 255 IISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAM 306


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 2/297 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K  +   A+    +     C      YN+++   C++ +   A  L++  
Sbjct: 260 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDA 319

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGFVPD+ TY  L+N  C+ G +  A E   E   KG  P +   + LV+GL   G +
Sbjct: 320 VFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLI 379

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q++N+M ++G   D++T+N +I  +CK G +     +       G   DV T+  L
Sbjct: 380 LHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTL 439

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D A +L+  + E G  P    Y  ++ G+ + G+ ++    F EM +KG 
Sbjct: 440 IDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGC 499

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            PN   Y +LI    R  +  EA+  +V+M++ GL P +  F+ +  G   C   DL
Sbjct: 500 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGF--CRNGDL 554



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT +++I    K G + +A  V N          V  +N+L+   C+      A  L+ R
Sbjct: 399 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 458

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY  ++N  C +GK+ E  E  QEM  KG +P     ++L++    +  
Sbjct: 459 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 518

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A +++ KM ++G   D  +FN+LI   C++G++E    ++  + + G  A   T+  
Sbjct: 519 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNT 578

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A S    +  A ++   ++  GH+     Y  +I G  +    D A+    EM  KG
Sbjct: 579 LIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 638

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   +  +I       R  +A   +  M ++G+ P       V D + N  K ++A 
Sbjct: 639 FIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVP------EVVDTILNADKKEIAA 692

Query: 318 KIELLE 323
              L+E
Sbjct: 693 PKILVE 698



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G V+ A+E+FN+  A   +  +++YNSL+  LC   L   A  ++  M  +G  PD +TY
Sbjct: 342 GDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTY 401

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++N  C  G + +A   + +   KG+ P V   + L+ G      L+SA Q+V +M +
Sbjct: 402 NIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE 461

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+NS++  +CK+G+V    E +  +   G   +  TY ILI    ++  ++E
Sbjct: 462 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 521

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +++  + ++G  P    +  +I G  R G  + A+  F +++ KG+      +  LI 
Sbjct: 522 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 581

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                     A     EM   G    S  + ++ DG
Sbjct: 582 AFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDG 617



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 126/277 (45%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           GL+ +A++V N+     C   +  YN ++  LC++     A  ++   I KG++PD  T+
Sbjct: 377 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTF 436

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +C   K+  A + ++ M + G  P     + ++ GL  AG +    +   +MI 
Sbjct: 437 NTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMIL 496

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +  T+N LIE  C+S ++E   ++   + + GL  D  ++  LI    + G ++ 
Sbjct: 497 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEG 556

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ L   L E G+      +  +I     +     A   F EM  KGH  +   Y +LI 
Sbjct: 557 AYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLID 616

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +      A  +LVEM + G  P    F  V + L
Sbjct: 617 GSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSL 653



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 120/258 (46%), Gaps = 1/258 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  +  LCE      A  L+  M R   VPD  TY  L+   C     +EA  +L+ M 
Sbjct: 227 YNIWIRGLCEAGRLPEAVRLVDGM-RAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMM 285

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P     + ++ G      ++ A +++   + +GFV D  T+ SLI  +C  G+VE
Sbjct: 286 NQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVE 345

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E++      G+  D+  Y  L+  +   G+I  A ++++ + E+G  P    Y  +I
Sbjct: 346 RALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVI 405

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G   DA    ++  +KG+ P+   +  LI    +  +   A   +  M E G+ 
Sbjct: 406 NGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIA 465

Query: 295 PISRCFDLVTDGLKNCGK 312
           P +  ++ V +GL   GK
Sbjct: 466 PDTITYNSVLNGLCKAGK 483



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 142/317 (44%), Gaps = 19/317 (5%)

Query: 15  VSPQTLSLI----IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SP T+  +    I  + + G + +AV+ F +   F C      YN+++ AL +      
Sbjct: 47  LSPATIHPLYVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQ 106

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ +  RM+  G  PD  T+ I + ++C + +   A   L+ +  +G          +V 
Sbjct: 107 AHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVC 162

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G+   A+Q+ ++M+      +L  FN ++  +CK G+V     +   V + G+  
Sbjct: 163 GLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSI 222

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF--PSL--YAPIIKGMFRRGQFDDA 246
           ++ TY I I  + +AG + EA RL+     DG + +  P +  Y  +I+G+ ++    +A
Sbjct: 223 NLFTYNIWIRGLCEAGRLPEAVRLV-----DGMRAYAVPDVVTYNTLIRGLCKKSMPQEA 277

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             +   M  +G  P+   Y  +I    +     EA   L +    G  P    +  + +G
Sbjct: 278 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 337

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C + D+   +EL  
Sbjct: 338 L--CAEGDVERALELFN 352



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 13/219 (5%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T +++IE F +   ++ A +V  K +        + +N+L++  C      GAY L 
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           +++  KG+     T+  L+ A+     M  A++   EM  KG         +L+ G    
Sbjct: 562 QKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKT 621

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV--- 192
             ++ A   + +MIK+GF+  + TF  +I ++  +  V   V + + + K+G+  +V   
Sbjct: 622 ANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDT 681

Query: 193 ---------STYKILIPAVSKAGMID-EAFRLLHNLVED 221
                    +  KIL+  + K G I    + +LH  V D
Sbjct: 682 ILNADKKEIAAPKILVEDLMKKGHISYPTYEVLHEGVRD 720



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T + +I  F     +  A ++F++  +   +     Y  L+   C+      AY 
Sbjct: 570 SATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYM 629

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  MI+KGF+P   T+  ++N+   + ++ +A   +  M   G  P V      V  +L
Sbjct: 630 HLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV------VDTIL 683

Query: 134 NAGYLESA--KQMVNKMIKQGFV 154
           NA   E A  K +V  ++K+G +
Sbjct: 684 NADKKEIAAPKILVEDLMKKGHI 706


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 142/289 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A++  N   ++ CQ  V+ +N +L ++C    +  A  L+  M
Sbjct: 119 TYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM 178

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C  G +  A + L++M   G  P     + L+ G      +
Sbjct: 179 LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM 238

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + ++ M+ +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 239 DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTV 298

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G  + A +LL  +   G KP    Y+ ++ G+ R G+ D+A  FF +++  G 
Sbjct: 299 IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGI 358

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  ++    +  +   A ++L  M      P    + ++ +G+
Sbjct: 359 RPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 407



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 140/297 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S  ++   K   V  A+++ ++      +  V+ YN L+  +C+      A   +  M 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+  T+ I++ + CS+G+  +A++ L +M  KG +P V   ++L+  L   G L 
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ KM   G   +  ++N L+   CK  +++  +E    +   G   D+ TY  L+
Sbjct: 205 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 264

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K G +D A  +L+ L   G  P    Y  +I G+ + G+ + A     EM+ KG  
Sbjct: 265 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLK 324

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           P+   Y+ L++   R G+  EA  +  ++  +G+ P +  ++ +  GL    + D A
Sbjct: 325 PDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 381



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 107/230 (46%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           ++  V   C    + +A + L EM +KG  P V   ++L+ G+   G L+ A + +N M 
Sbjct: 85  FSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 144

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G   ++ T N ++ ++C +G      ++   + + G    V T+ ILI  + + G++ 
Sbjct: 145 SYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLG 204

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  +L  +   G  P    Y P++ G  +  + D A  +   M  +G  P+   Y  L+
Sbjct: 205 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 264

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           T   + G+   A   L +++  G +P+   ++ V DGL   GK + A K+
Sbjct: 265 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKL 314



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 85/184 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 259 TYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM 318

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  TY+ LV+     GK+ EA +F  ++   G  P     + ++ GL  +   
Sbjct: 319 RRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQT 378

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  MI +       T+  LIE I   G  +  +++   +C  GL    S  ++ 
Sbjct: 379 DRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVA 438

Query: 199 IPAV 202
            P +
Sbjct: 439 APVL 442


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  134 bits (336), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 154/306 (50%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+  F   G ++ A  +FN+    N     + +  L+  LC+  +   A  +   M
Sbjct: 269 TYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAM 328

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  P+  TY  L++ +C + +M EAQ+ L  M DKG  P V   ++L+ G      L
Sbjct: 329 TKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRL 388

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK ++ +M ++    D  T+++L++ +C+ G  +  + ++  +C  GL  D+ TY  L
Sbjct: 389 DEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTL 448

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +DEA +LL ++ E   +P   LY  +I+GMF  G+ + A   FS++   G 
Sbjct: 449 LDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGI 508

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAE 317
            P    YT++I    + G   EA     +M + G  P S  ++++  G L+N    D + 
Sbjct: 509 QPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQN---QDSST 565

Query: 318 KIELLE 323
            I L++
Sbjct: 566 AIRLID 571



 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 136/287 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G+V  A  VF   T    +     YN+L+   C       A  ++  M
Sbjct: 304 TFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIM 363

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   +Y IL+N +C   ++ EA+  L EMS+K   P       L+QGL   G  
Sbjct: 364 VDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRP 423

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M   G + DL T+++L++ +CK G ++  +++  S+ +  +  D+  Y IL
Sbjct: 424 QEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNIL 483

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG ++ A  L   L  DG +P    Y  +IKG+ + G  D+A+  F +M+  G 
Sbjct: 484 IEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGF 543

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            PN   Y ++I    +      A   + EM     +  S  F ++ D
Sbjct: 544 LPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 149/319 (46%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L + P   T + +I      G +  AV +FN+      Q  V+ Y++++  LC+
Sbjct: 150 LGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R+M  KG  P+   Y  ++++ C    + +A + L EM D+G  P V  
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ G  + G+L  A  + N+M+ +  + +  TF  L++ +CK G V     ++ ++ 
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT 329

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G   +  TY  L+        +DEA ++L  +V+ G  P    Y  +I G  +R + D
Sbjct: 330 KKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLD 389

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM  K   P+   Y+ L+    + GR  EA N   EM   GL P    +  + 
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLL 449

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    L E ++LL+
Sbjct: 450 DGL--CKHGHLDEALKLLK 466



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 144/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I    K G    A+++  K     C+  ++ Y +++ +LC+  L + A  L+  M
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM 258

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY+ +++ +CS G + EA     EM  +   P      +LV GL   G +
Sbjct: 259 VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMV 318

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ +   M K+G   +  T+N+L++  C + +++   ++   +   G    V +Y IL
Sbjct: 319 SEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNIL 378

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +DEA  LL  + E    P    Y+ +++G+ + G+  +A   F EM   G 
Sbjct: 379 INGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGL 438

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+    + G   EA   L  M E  + P    ++++ +G+   GK ++A++
Sbjct: 439 LPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKE 498

Query: 319 I 319
           +
Sbjct: 499 L 499



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 2/286 (0%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
           V + N+   F     V   N L+  LC +     A +++ +M + G  PD  T+  L+N 
Sbjct: 112 VSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLING 171

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
            C  G+++EA     EM  +G  P V     ++ GL  +G    A Q++ KM ++G   +
Sbjct: 172 RCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPN 231

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  + ++I+++CK   V   +++   +   G+  DV TY  ++      G ++EA  L +
Sbjct: 232 LVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFN 291

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +V     P    +  ++ G+ + G   +A C F  M  KG  PN   Y  L+       
Sbjct: 292 EMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNN 351

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +  EA   L  M + G  P+   ++++ +G   C +  L E   LL
Sbjct: 352 QMDEAQKVLDIMVDKGCAPVVHSYNILINGY--CKRRRLDEAKSLL 395



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 125/277 (45%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ V  K      Q   + +N+L+   C       A  L   M+R+G  PD  +Y+ ++N
Sbjct: 146 AISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVIN 205

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C SG    A + L++M +KG  P +     ++  L     +  A  ++++M+ +G   
Sbjct: 206 GLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPP 265

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+ T+++++   C  G +     ++  +    +  +  T+ IL+  + K GM+ EA  + 
Sbjct: 266 DVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVF 325

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + + G +P    Y  ++ G     Q D+A      M  KG  P    Y +LI    + 
Sbjct: 326 EAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKR 385

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            R  EA + LVEM+E  LTP +  +  +  GL   G+
Sbjct: 386 RRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 134/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  F +    N +  V+ +   L ++ + K +    +L  +M   G   +  +  I
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C    +  A   L +M   G  P     + L+ G    G ++ A  + N+M+++G
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRG 192

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ +++++I  +CKSG     +++   + + G   ++  Y  +I ++ K  ++++A 
Sbjct: 193 HQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAM 252

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  +V+ G  P    Y+ I+ G    G  ++A   F+EM  +   PN   +T+L+   
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGL 312

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G   EA      MT+ G  P +  ++ + DG     + D A+K+
Sbjct: 313 CKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 35/272 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +++M     +    + +++I  + K   +D A  +  + +        + Y++L+  L
Sbjct: 358 KVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGL 417

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V     A  L + M   G +PD  TY+ L++  C  G + EA + L+ M +    P +
Sbjct: 418 CQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDI 477

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++G+  AG LE AK++ +K+   G    + T                       
Sbjct: 478 VLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRT----------------------- 514

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
                       Y I+I  + K G+ DEA+ L   + +DG  P    Y  II+G  +   
Sbjct: 515 ------------YTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQD 562

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              A     EM  K    +   + ML+ +  R
Sbjct: 563 SSTAIRLIDEMVGKRFSADSSTFQMLLDLESR 594



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 93/201 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+    T S +++   + G    A+ +F +  +      ++ Y++LL  LC+   
Sbjct: 398 MSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGH 457

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L++ M      PD   Y IL+     +GK+  A+E   ++   G  P +R   +
Sbjct: 458 LDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTI 517

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++GLL  G  + A ++  KM   GF+ +  ++N +I+   ++ +    + +   +    
Sbjct: 518 MIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKR 577

Query: 188 LCADVSTYKILIPAVSKAGMI 208
             AD ST+++L+   S+  +I
Sbjct: 578 FSADSSTFQMLLDLESRDEII 598


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 135/298 (45%), Gaps = 3/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ + K G VD A+EV        CQ     YNSL++ L + K  H A AL+ +M
Sbjct: 349 TYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKM 408

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G +P+  TY  L+   C       A    + M   G  P      +L   L  AG  
Sbjct: 409 QKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRA 468

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A   +   +++G  L    + +LI+   K+G  +F   +   +   G   D  TY +L
Sbjct: 469 EEAYSFI---VRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVL 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +   G K     Y  +I  M R G+ D A   ++EM   GH
Sbjct: 526 LHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 585

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   YT+ I    + GR  +A + +++M   G+ P    ++++ DG  + G  D A
Sbjct: 586 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRA 643



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 154/377 (40%), Gaps = 58/377 (15%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLF 60
           ++  E+M+   L       +++ +   K G  + A   +  K  A       + Y +L+ 
Sbjct: 437 FRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALT----KVYYTTLID 492

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +      A  LI RMI +G  PD  TY++L++A C   ++ EA   L +MS +G   
Sbjct: 493 GFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKC 552

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    +L+  +L  G  + AK+M N+M   G      T+   I + CK G +E   ++ 
Sbjct: 553 TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLI 612

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAF---------------------------- 212
             + + G+  DV TY ILI      G ID AF                            
Sbjct: 613 LKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKG 672

Query: 213 -----------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                                  +LL  +V+ G  P  + Y+ +I G  + G+ ++A   
Sbjct: 673 NLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLL 732

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  KG  PN  +YT+LI  C     F +A +++  M+E G  P    + L+  GL N
Sbjct: 733 LDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCN 792

Query: 310 CGKHDLAEKI--ELLEV 324
            G  +  + +  +LLE+
Sbjct: 793 EGDFEKVKSLFCDLLEL 809



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 134/310 (43%), Gaps = 1/310 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +MK    S + +  + +I    K G V +A  +F+          V+ YN+++    ++ 
Sbjct: 163 MMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLG 222

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A  +   M + G  PD  TY  L+   C   K  EA+E L     +GF P V    
Sbjct: 223 RMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFT 281

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   A   + A +M NKM+     LDL+ F  LI ++ K   ++   E+   +   
Sbjct: 282 NLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN 341

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  +V TY  +I    K+G +D A  +L  +  DG +P    Y  ++ G+ +  +   A
Sbjct: 342 GLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKA 401

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++M+  G  PN   YT L+        F  A      M + GL P    + ++TD 
Sbjct: 402 MALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDA 461

Query: 307 LKNCGKHDLA 316
           L   G+ + A
Sbjct: 462 LCKAGRAEEA 471



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 152/350 (43%), Gaps = 42/350 (12%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I  + K G +++A+++        C      YN+L++ LC+ K    A  L+
Sbjct: 207 SVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKT-EEAEELL 265

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGK--------------------------------- 102
              +++GF P   T+  L+N +C + K                                 
Sbjct: 266 NNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKK 325

Query: 103 --MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
             ++EA+E L E+S  G  P V     ++ G   +G ++ A +++  M + G   +  T+
Sbjct: 326 DRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 385

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           NSL+  + K  ++   + +   + K G+  +V TY  L+         D AFRL   + +
Sbjct: 386 NSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQ 445

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           +G KP    YA +   + + G+ ++A+ F      KG    +  YT LI    + G    
Sbjct: 446 NGLKPDEHAYAVLTDALCKAGRAEEAYSFIVR---KGVALTKVYYTTLIDGFSKAGNTDF 502

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           AA  +  M + G TP S  + ++   L  C +  L E + +L ++SLR +
Sbjct: 503 AATLIERMIDEGCTPDSYTYSVLLHAL--CKQKRLNEALPILDQMSLRGI 550



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 137/327 (41%), Gaps = 16/327 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M     +    T S+++    K   ++ A+ + ++ +    +  +  Y  L+  +  
Sbjct: 507 IERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLR 566

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   M   G  P   TY + +N++C  G++ +A++ + +M  +G  P V  
Sbjct: 567 EGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVT 626

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------- 171
            ++L+ G  + GY++ A   + +M+      +  T+  L++ + K               
Sbjct: 627 YNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMW 686

Query: 172 ---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
              E++   ++   + K GL   V+TY  LI    KAG ++EA  LL ++   G  P   
Sbjct: 687 NLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNED 746

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y  +IK       F+ A  F S M   G  P    Y +L+      G F +  +   ++
Sbjct: 747 IYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDL 806

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDL 315
            E+G       + ++ DGL   G  D+
Sbjct: 807 LELGYNHDEVAWKILNDGLLKAGYVDI 833



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 139/350 (39%), Gaps = 46/350 (13%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P+T +   ++  + + G +  A  +F       CQ+    Y  L+  LC+ K    A 
Sbjct: 99  LEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKAL 158

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M R G  P+ R +  L++  C SG++ +A+     M   G  P V   + ++ G 
Sbjct: 159 VLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 218

Query: 133 LNAGYL----------------------------------ESAKQMVNKMIKQGFVLDLE 158
              G +                                  E A++++N  +K+GF   + 
Sbjct: 219 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTPTVV 278

Query: 159 TFNSLIETICKSGEVEFCV----EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           TF +LI   C + + +  +    +M  S CKL    D+  +  LI ++ K   + EA  L
Sbjct: 279 TFTNLINGYCMAEKFDDALRMKNKMMSSKCKL----DLQVFGKLINSLIKKDRLKEAKEL 334

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L+ +  +G  P    Y  II G  + G+ D A      M+  G  PN   Y  L+    +
Sbjct: 335 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVK 394

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +  +A   L +M + G+ P    +  +  G   C +HD      L E+
Sbjct: 395 DKKLHKAMALLTKMQKDGIIPNVITYTTLLQG--QCDEHDFDNAFRLFEM 442



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 143/346 (41%), Gaps = 35/346 (10%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L++SP+  +  +    +  + +    V+++          + YN+++ + C+      A+
Sbjct: 29  LALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAH 88

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              R ++  G  P+  T   LV  +C +G++R+A      M   G         +L+QGL
Sbjct: 89  RYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGL 148

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            +A  +  A  +   M + G   ++  F  LI  +CKSG V     ++ ++ + G+   V
Sbjct: 149 CDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSV 208

Query: 193 STYKILIPAVSKAGMIDEAFR----------------------------------LLHNL 218
            TY  +I   SK G +++A +                                  LL+N 
Sbjct: 209 MTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNA 268

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V++G  P    +  +I G     +FDDA    ++M       +  V+  LI    +  R 
Sbjct: 269 VKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRL 328

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIELLE 323
            EA   L E++  GL P    +  + DG    GK D+A E ++++E
Sbjct: 329 KEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 374



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 18/219 (8%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ-----QCVLLYNSLLFALCEVKL 67
           V+P   T +++I+  G  G +D A     +    +C+      C+LL + L   L  V+ 
Sbjct: 620 VAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRS 679

Query: 68  FHGA-----------YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              +           + L+ RM++ G  P   TY+ L+  +C +G++ EA   L  M  K
Sbjct: 680 VDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGK 739

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P      LL++   +  + E A   V+ M + GF   LE++  L+  +C  G+ E  
Sbjct: 740 GLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKV 799

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             ++  + +LG   D   +KIL   + KAG +D  F++L
Sbjct: 800 KSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 838



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL   + L          +E   KHGL                   V  Y+SL+ 
Sbjct: 685 MWNLIELDITWQL----------LERMVKHGL----------------NPTVTTYSSLIA 718

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+  M  KG  P++  Y +L+   C +    +A  F+  MS+ GF P
Sbjct: 719 GFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQP 778

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    LLV GL N G  E  K +   +++ G+  D   +  L + + K+G V+ C +M 
Sbjct: 779 QLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQML 838

Query: 181 YSVCKLGLCADVSTYKIL 198
             + K   C    TY ++
Sbjct: 839 SIMEKRYCCISSQTYALV 856


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 2/271 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C    + Y SL+  LC+VK    A   + +M+ KGF PD  TY  +++A C   ++ EA
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++FL+EM+++   P V    +L+ GL   G ++ A  +++KM K+  V    T+NSLI  
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISG 124

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+       ++   +   G   D+ TY  LI    K+   D+A R+   LV  G +P 
Sbjct: 125 LCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD 184

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYL 285
              Y+ +I G+ + G+  +A   F  M   G   PN   Y  LI+   R G+  EA N L
Sbjct: 185 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 244

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             M E G +P    +  + +G     + D A
Sbjct: 245 ERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 126/272 (46%), Gaps = 4/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  Y +++ ALC     H A   +  M  +   P+  TY +L++  C  G++ EA   L 
Sbjct: 46  VYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLS 105

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  K   P     + L+ GL  A     A  ++ +M+  G + D+ T+ +LI   CKS 
Sbjct: 106 KMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSK 164

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLY 230
           + +  + ++  +   G   DV TY  LI  + K G + EA  L   +++ G   P    Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G  R G+ D+A      M   G  P+   YT L+    +  R  +A + L +MT 
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            GLTP    F  + DGL  C ++ L++ + +L
Sbjct: 285 KGLTPDVVTFTSLMDGL--CRENRLSDAVHIL 314



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 132/275 (48%), Gaps = 2/275 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+  LC+      A AL+ +M RK  VP   TY  L++  C + +  EA + L+
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P +     L+ G   +   + A ++  +++ +GF  D+ T++ LI+ +CK G
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG 199

Query: 172 EVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
            ++  ++++  + K G C  +  TY  LI    + G +DEA  LL  + E G  P    Y
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 259

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G  +  + DDA+   ++M  KG  P+   +T L+    R  R  +A + L EM  
Sbjct: 260 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
              +P    ++ + DG     + + A K  L E+ 
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K    D+A+ VF +  A   +  V+ Y+ L+  LC+      A  L  RM
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           I+ G  +P+  TY  L++ +C  GKM EA   L+ M++ G +P V     L+ G      
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A  ++N+M ++G   D+ TF SL++ +C+   +   V +   + +      V TY  
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++    +A  ++EA + +  L E    P    +  +I+G+ +  +  +A     E + + 
Sbjct: 332 ILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAAN-YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P+  +YT +I    R  +  EA   Y   + E G  P S  +  +  GL N G  D A
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA 449



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 76/361 (21%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M   NL+ +  T +++I+   K G VD AV + +K     C    + YNSL+  L
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125

Query: 63  CEVKLFHGAYALIRRMI-----------------------------------RKGFVPDK 87
           C+ +    AY L+  M+                                    +GF PD 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ L++  C  G+++EA +                                      +
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLF-----------------------------------GR 210

Query: 148 MIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           MIK G  + +  T+NSLI   C+ G+++  + +   + + G   DV TY  L+    K  
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D+A+ LL+ +   G  P    +  ++ G+ R  +  DA     EM+ K   P    Y 
Sbjct: 271 RLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYN 330

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            ++    R  +  EA  +++E  EM   P    F+++  GL  C  +  +E +EL+E + 
Sbjct: 331 TILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIRGL--CKVNRSSEAMELVEEAR 386

Query: 327 R 327
           R
Sbjct: 387 R 387



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M     S    T + ++  F K   +D+A ++ N+ T       V+ + SL+  LC 
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M RK   P   TY  +++ +C + ++ EA++F+ E  D    P V  
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVS 361

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++++GL        A ++V +  ++    D+  + ++I+ +C+  +V+    +Y  + 
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 185 KLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           +   C   S TY  LI  +  AGM+D A       +E G  P    Y  +I    +  + 
Sbjct: 422 EEPGCLPNSITYSTLITGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRD 477

Query: 244 DDAFCFFSEMKIKG 257
           +DA     +M  +G
Sbjct: 478 EDARELLDDMVQRG 491



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    K      A+E+  +     C   V++Y +++  LC  K    A  + R+M
Sbjct: 361 SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKM 420

Query: 79  IRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + + G +P+  TY+ L+   C++G +  A+ +++    KG  P +   +LL+     A  
Sbjct: 421 LEEPGCLPNSITYSTLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANR 476

Query: 138 LESAKQMVNKMIKQGF 153
            E A+++++ M+++GF
Sbjct: 477 DEDARELLDDMVQRGF 492


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  134 bits (336), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 133/271 (49%), Gaps = 2/271 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C    + Y SL+  LC+VK    A   + +M+ KGF PD  TY  +++A C   ++ EA
Sbjct: 6   SCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEA 65

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++FL+EM+++   P V    +L+ GL   G ++ A  +++KM K+  V    T+NSLI  
Sbjct: 66  RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISG 124

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+       ++   +   G   D+ TY  LI    K+   D+A R+   LV  G +P 
Sbjct: 125 LCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD 184

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYL 285
              Y+ +I G+ + G+  +A   F  M   G   PN   Y  LI+   R G+  EA N L
Sbjct: 185 VVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLL 244

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             M E G +P    +  + +G     + D A
Sbjct: 245 ERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 126/272 (46%), Gaps = 4/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  Y +++ ALC     H A   +  M  +   P+  TY +L++  C  G++ EA   L 
Sbjct: 46  VYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLS 105

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  K   P     + L+ GL  A     A  ++ +M+  G + D+ T+ +LI   CKS 
Sbjct: 106 KMRKKCV-PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSK 164

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLY 230
           + +  + ++  +   G   DV TY  LI  + K G + EA  L   +++ G   P    Y
Sbjct: 165 KSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G  R G+ D+A      M   G  P+   YT L+    +  R  +A + L +MT 
Sbjct: 225 NSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTR 284

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            GLTP    F  + DGL  C ++ L++ + +L
Sbjct: 285 KGLTPDVVTFTSLMDGL--CRENRLSDAVHIL 314



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 132/275 (48%), Gaps = 2/275 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+  LC+      A AL+ +M RK  VP   TY  L++  C + +  EA + L+
Sbjct: 81  VVTYTVLIDGLCKGGRVDEAVALLSKM-RKKCVPTAVTYNSLISGLCKAERASEAYDLLE 139

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P +     L+ G   +   + A ++  +++ +GF  D+ T++ LI+ +CK G
Sbjct: 140 EMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG 199

Query: 172 EVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
            ++  ++++  + K G C  +  TY  LI    + G +DEA  LL  + E G  P    Y
Sbjct: 200 RLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTY 259

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G  +  + DDA+   ++M  KG  P+   +T L+    R  R  +A + L EM  
Sbjct: 260 TTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRR 319

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
              +P    ++ + DG     + + A K  L E+ 
Sbjct: 320 KSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 4/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K    D+A+ VF +  A   +  V+ Y+ L+  LC+      A  L  RM
Sbjct: 152 TYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM 211

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           I+ G  +P+  TY  L++ +C  GKM EA   L+ M++ G +P V     L+ G      
Sbjct: 212 IKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR 271

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A  ++N+M ++G   D+ TF SL++ +C+   +   V +   + +      V TY  
Sbjct: 272 LDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNT 331

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++    +A  ++EA + +  L E    P    +  +I+G+ +  +  +A     E + + 
Sbjct: 332 ILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRR 389

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAAN-YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P+  +YT +I    R  +  EA   Y   + E G  P S  +  +  GL N G  D A
Sbjct: 390 CNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA 449



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 76/361 (21%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M   NL+ +  T +++I+   K G VD AV + +K     C    + YNSL+  L
Sbjct: 67  KFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRK-KCVPTAVTYNSLISGL 125

Query: 63  CEVKLFHGAYALIRRMI-----------------------------------RKGFVPDK 87
           C+ +    AY L+  M+                                    +GF PD 
Sbjct: 126 CKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ L++  C  G+++EA +                                      +
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLF-----------------------------------GR 210

Query: 148 MIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           MIK G  + +  T+NSLI   C+ G+++  + +   + + G   DV TY  L+    K  
Sbjct: 211 MIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D+A+ LL+ +   G  P    +  ++ G+ R  +  DA     EM+ K   P    Y 
Sbjct: 271 RLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYN 330

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            ++    R  +  EA  +++E  EM   P    F+++  GL  C  +  +E +EL+E + 
Sbjct: 331 TILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIRGL--CKVNRSSEAMELVEEAR 386

Query: 327 R 327
           R
Sbjct: 387 R 387



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M     S    T + ++  F K   +D+A ++ N+ T       V+ + SL+  LC 
Sbjct: 244 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCR 303

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M RK   P   TY  +++ +C + ++ EA++F+ E  D    P V  
Sbjct: 304 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVS 361

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +++++GL        A ++V +  ++    D+  + ++I+ +C+  +V+    +Y  + 
Sbjct: 362 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKML 421

Query: 185 KLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           +   C   S TY  L+  +  AGM+D A       +E G  P    Y  +I    +  + 
Sbjct: 422 EEPGCLPNSITYSTLVTGLCNAGMLDRA----RGYIEKGCVPNIGTYNLLIDAFRKANRD 477

Query: 244 DDAFCFFSEMKIKG 257
           +DA     +M  +G
Sbjct: 478 EDARELLDDMVQRG 491



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    K      A+E+  +     C   V++Y +++  LC  K    A  + R+M
Sbjct: 361 SFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKM 420

Query: 79  IRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + + G +P+  TY+ LV   C++G +  A+ +++    KG  P +   +LL+     A  
Sbjct: 421 LEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANR 476

Query: 138 LESAKQMVNKMIKQGF 153
            E A+++++ M+++GF
Sbjct: 477 DEDARELLDDMVQRGF 492


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  133 bits (335), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 156/342 (45%), Gaps = 21/342 (6%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            + P N    P  LS   ++ +  K   V+   +VF+   A      V  Y +++ A C+
Sbjct: 177 FLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCK 236

Query: 65  V-----------------KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           V                 +L   A  L R M+ KG VPD  TY IL+N +C   + REA+
Sbjct: 237 VGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAK 296

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L EM D G  P     + L+ G +  G +E A ++ ++M+  G   +L  +N+L+  +
Sbjct: 297 LMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGV 356

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK+G++E  +E+   + + G+  D  TY +LI    +   +  AF LL  + +    P  
Sbjct: 357 CKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTV 416

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ II G+ R G          EM + G  PN  VYT L+T   + GR  E+   L  
Sbjct: 417 LTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILER 476

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK--IELLEVSLR 327
           M E G+ P   C++ +  G     + + A    +E+LE  LR
Sbjct: 477 MREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 518



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 153/322 (47%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKPY-NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K +E+M+      V P  QT SL+IE   +   +  A E+ ++         VL Y+ 
Sbjct: 362 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 421

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC      G  A++R M+  G  P+   Y  L+ A    G++ E++  L+ M ++G
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G   A  +E A+  + +M+++    +  T+ + I+   K+GE+E   
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIAD 541

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             +  +   G+  +V  Y  LI    K G + EAF +   ++          Y+ +I G+
Sbjct: 542 RYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGL 601

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G+  +AF  FSE++ KG  PN   Y  LI+   + G   +A+  L EM   G+ P  
Sbjct: 602 SRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDI 661

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++++ DGL   G+ + A+ +
Sbjct: 662 VTYNILIDGLCKAGEIERAKNL 683



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 2/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ MK   L+ +  T S+II    + G +     +  +      +   ++Y +L+ A
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +      +  ++ RM  +G +PD   Y  L+  +C + +M EA+ +L EM ++   P 
Sbjct: 461 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 520

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                  + G   AG +E A +  N+M+  G + ++  + +LIE  CK G V     ++ 
Sbjct: 521 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 580

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  DV TY +LI  +S+ G + EAF +   L E G  P    Y  +I G  ++G
Sbjct: 581 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 640

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             D A     EM IKG  P+   Y +LI    + G    A N   ++   GLTP    + 
Sbjct: 641 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 700

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            + DG   C   +     +LLE
Sbjct: 701 AMVDGY--CKSKNPTAAFQLLE 720



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 131/291 (45%), Gaps = 1/291 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +IE   K G V  A  VF    +    Q V  Y+ L+  L      H A+ +   +  
Sbjct: 560 TALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQE 619

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG +P+  TY  L++  C  G + +A + L+EM  KG NP +   ++L+ GL  AG +E 
Sbjct: 620 KGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIER 679

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK + + +  +G   +  T+ ++++  CKS       ++   +   G+  D   Y +++ 
Sbjct: 680 AKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILN 739

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K    ++A  L   ++E G     S +  +I+G  + G+  +A     EM  K   P
Sbjct: 740 FCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQEANHLLEEMIEKQFIP 798

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           N   YT LI    + G   EA    +EM E  + P ++ +  +  G  N G
Sbjct: 799 NHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIG 849



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 4/318 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  +  T    I+ + K G ++ A   FN+  +      V +Y +L+   C+      A+
Sbjct: 517 LRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAF 576

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++ R ++ +  + D +TY++L++    +GKM EA     E+ +KG  P     + L+ G 
Sbjct: 577 SVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGS 636

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A Q++ +M  +G   D+ T+N LI+ +CK+GE+E    ++  +   GL  + 
Sbjct: 637 CKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNC 696

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++    K+     AF+LL  ++  G  P   +Y  I+    +  +F+ A   F E
Sbjct: 697 VTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQE 756

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG        T++   C + G+  EA + L EM E    P    +  + D   NC  
Sbjct: 757 MLEKGFASTVSFNTLIEGYC-KSGKLQEANHLLEEMIEKQFIPNHVTYTSLID--HNCKA 813

Query: 313 HDLAEKIEL-LEVSLRSV 329
             + E   L LE+  R+V
Sbjct: 814 GMMGEAKRLWLEMQERNV 831



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 38/338 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + ++    K G V+ +  +  +         V  YNSL+   C+ K    A   +  M+ 
Sbjct: 455 TTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE 514

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-------------------- 120
           +   P+  TY   ++ +  +G+M  A  +  EM   G  P                    
Sbjct: 515 RRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTE 574

Query: 121 ---------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
                           V+   +L+ GL   G +  A  + +++ ++G + +  T+NSLI 
Sbjct: 575 AFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLIS 634

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             CK G V+   ++   +C  G+  D+ TY ILI  + KAG I+ A  L  ++   G  P
Sbjct: 635 GSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTP 694

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               YA ++ G  +      AF    EM ++G PP+  +Y +++  C +  +F +A +  
Sbjct: 695 NCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLF 754

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM E G    +  F+ + +G    GK  L E   LLE
Sbjct: 755 QEMLEKGFAS-TVSFNTLIEGYCKSGK--LQEANHLLE 789



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 135/307 (43%), Gaps = 7/307 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A  +F+           + Y +++   C+ K    A+ L+  M
Sbjct: 663 TYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEM 722

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD   Y +++N  C   K  +A +  QEM +KGF   V   + L++G   +G L
Sbjct: 723 LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SFNTLIEGYCKSGKL 781

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +MI++ F+ +  T+ SLI+  CK+G +     ++  + +  +     TY  L
Sbjct: 782 QEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSL 841

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + E   L   +V  G +P    Y  +I    R G   +A     E+ +KG 
Sbjct: 842 LHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGM 901

Query: 259 PPNRPVYTMLIT--MCGRG----GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           P        L T  +  RG    G   EAA  L  M + G    +     + DG +N   
Sbjct: 902 PMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGAN 961

Query: 313 HDLAEKI 319
            + ++ +
Sbjct: 962 SEDSDNL 968



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 2/265 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+           A+ +   M+  G   +   +  L+N  C +GKM +A E +QE
Sbjct: 312 ITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQE 371

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M +KG  P  +   LL++G      +  A +++++M K+     + T++ +I  +C+ G 
Sbjct: 372 MMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGN 431

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++    +   +   GL  +   Y  L+ A +K G ++E+  +L  + E G  P    Y  
Sbjct: 432 LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNS 491

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  +  + ++A  +  EM  +   PN   Y   I    + G    A  Y  EM   G
Sbjct: 492 LIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCG 551

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAE 317
           + P    +  + +G  +C + ++ E
Sbjct: 552 VLPNVGIYTALIEG--HCKEGNVTE 574



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 41/206 (19%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N+L+   C+      A  L+  MI K F+P+  TY  L++  C +G M EA+    EM 
Sbjct: 768 FNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQ 827

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI------------------------- 149
           ++   P  +    L+ G  N G +     +  +M+                         
Sbjct: 828 ERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVM 887

Query: 150 ----------------KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                           K GF L L T + +      +G ++   E+  S+ K G  ++ +
Sbjct: 888 EACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTT 947

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLV 219
           +   L+         +++  LL  + 
Sbjct: 948 SLGDLVDGNQNGANSEDSDNLLKQMA 973


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 138/273 (50%), Gaps = 1/273 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E++ +     C      YN L+ +LC       A  L++ M   G   +  TY  L++
Sbjct: 425 AMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLID 484

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C + ++ EA+E   +M  +G +      + L+ GL  +  +E A Q++++MI +G   
Sbjct: 485 GFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRP 544

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+NSL+   CK+G+++   ++  ++   G   D+ TY  LI  + KAG ++ A +LL
Sbjct: 545 DKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLL 604

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGR 274
             +   G    P  Y P+I+ +FRR +  +A   F EM  K   P+   Y ++   +C  
Sbjct: 605 RTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQG 664

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           GG   EA ++++EM E G  P    F ++ +GL
Sbjct: 665 GGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGL 697



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 3/320 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+ + L    +T + I++ F + G +D A+ V  +     C    +  N L+   C+
Sbjct: 218 MEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCK 277

Query: 65  VKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A   I  M +R+GF PDK T+ +LVN    +G ++ A E +  M  +GF+P + 
Sbjct: 278 EGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIY 337

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL   G ++ A +++N+MI++    +  T+N++I T+CK  +VE   ++   +
Sbjct: 338 TYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVL 397

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  DV TY  LI  +  +     A  L   +   G  P    Y  +I  +  RG+ 
Sbjct: 398 TGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKL 457

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +A     EM++ G   N   Y  LI    +  R  EA     +M   G++  S  ++ +
Sbjct: 458 QEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            DGL  C    + E  +L++
Sbjct: 518 IDGL--CKSERVEEASQLMD 535



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 130/280 (46%), Gaps = 4/280 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G VD AV+V N+    +C    + YN+++  LC+      A  L   +
Sbjct: 338 TYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVL 397

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  TY  L+   C S     A E  +EM  KG +P     ++L+  L   G L
Sbjct: 398 TGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKL 457

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M   G   ++ T+N+LI+  CK+  +    E++  +   G+  +  TY  L
Sbjct: 458 QEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTL 517

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  ++EA +L+  ++ +G +P    Y  ++    + G    A      M   G 
Sbjct: 518 IDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGC 577

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL---VEMTEMGLTP 295
            P+   Y  LI    + GR VEAA  L   ++M  + LTP
Sbjct: 578 EPDIVTYGTLIAGLCKAGR-VEAATKLLRTIQMKGINLTP 616



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G V +A+EV +          +  YNSL+  LC++     A  ++ +M
Sbjct: 303 TFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQM 362

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  TY  +++  C   ++ EA +    ++ KG  P V   + L+QGL  +   
Sbjct: 363 IERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G   D  T+N LI+++C  G+++  + +   +   G   +V TY  L
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   I EA  +   +   G       Y  +I G+ +  + ++A     +M ++G 
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGL 542

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   + G   +AA+ +  M   G  P    +  +  GL   G+ + A K
Sbjct: 543 RPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATK 602

Query: 319 I 319
           +
Sbjct: 603 L 603



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 11/319 (3%)

Query: 6   ELMKPYNLSVS---PQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFA 61
           +++K   +S+S     +L + IE +   GL +  ++  +     F        YN LL  
Sbjct: 110 DILKEMKISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNV 169

Query: 62  LCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           L +   +KL   A++    M+ +G  PD  T+ IL+ A C + ++R A   ++EM D G 
Sbjct: 170 LVDGNKLKLVEIAHS---NMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGL 226

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +    ++QG +  G L+ A ++  +M++ G V+   T N L+   CK G +E  + 
Sbjct: 227 LPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALR 286

Query: 179 MYYSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
               +  + G   D  T+ +L+  +SK G +  A  ++  ++ +G  P    Y  +I G+
Sbjct: 287 FIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGL 346

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+ D+A    ++M  +   PN   Y  +I+   +  +  EA    + +T  G+ P  
Sbjct: 347 CKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDV 406

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             ++ +  GL     H +A
Sbjct: 407 CTYNSLIQGLCLSRNHTVA 425



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K+  +  A E+F++       +  + YN+L+  LC+ +    A  L+ +M
Sbjct: 478 TYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQM 537

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PDK TY  L+  +C +G +++A + +Q M+  G  P +     L+ GL  AG +
Sbjct: 538 IMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRV 597

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +++  +  +G  L    +N +I+ + +    +  V ++  + +     D  TYKI+
Sbjct: 598 EAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIV 657

Query: 199 IPAVSK-AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
              + +  G I EA   +  ++E G+ P  S +  + +G+F
Sbjct: 658 FRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLF 698



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 111/260 (42%), Gaps = 12/260 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +S +  T + +I+   K   V+ A ++ ++      +     YNSLL   C+   
Sbjct: 502 MELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGD 561

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M   G  PD  TY  L+   C +G++  A + L+ +  KG N      + 
Sbjct: 562 IKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNP 621

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-----EVEFCVEMYYS 182
           ++Q L      + A ++  +MI++    D  T+  +   +C+ G      V+F +EM   
Sbjct: 622 VIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEM--- 678

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             + G   + S++ +L   +    M+    +L+  ++E     F      +I+G  +  +
Sbjct: 679 -LERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKA--KFSDNEVTMIRGFLKISK 735

Query: 243 FDDAFCFFSEMKIKGHPPNR 262
           + DA      + +    PNR
Sbjct: 736 YQDALATLGGI-LDSRKPNR 754


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 155/313 (49%), Gaps = 3/313 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   + P+   +++  F    +V  AVEV ++   +  +    ++  LL
Sbjct: 150 VWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLL 209

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A  +   M R+ F P+ R +  L+  WC  GK+ EA+E L +M + G  
Sbjct: 210 DALCKNGSVKEASKVFEDM-REKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 268

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVE 178
           P +     L+ G  +AG +  A  ++N M K+GF  ++  +  LI+ +C++ + ++  + 
Sbjct: 269 PDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMR 328

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  + + G  AD+ TY  LI    K GMID+ + +L ++ + G  P    Y  I+    
Sbjct: 329 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHE 388

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++ QF++      +MK +G  P+  +Y ++I +  + G   EA     EM   GL+P   
Sbjct: 389 KKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVD 448

Query: 299 CFDLVTDGLKNCG 311
            F ++ +G  + G
Sbjct: 449 TFVIMINGFTSQG 461



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 12/238 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ Y       T + +I  F K G++D    V +           + Y  ++ A  + + 
Sbjct: 333 MERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQ 392

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     LI +M R+G  PD   Y +++   C  G+++EA     EM   G +P V    +
Sbjct: 393 FEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVI 452

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--TFNSLIETICKSGEVEF------CVEM 179
           ++ G  + G+L  A     +M+ +G     +  T  SL+  + +  ++E       C+  
Sbjct: 453 MINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDVWSCISN 512

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             S C+L    +VS + I I A+   G + EA     +++E    P P+ YA ++KG+
Sbjct: 513 KTSSCEL----NVSAWTIWIHALYAKGHVKEACSYCLDMMEMDLMPQPNTYAKLMKGL 566



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +L+   + A M+ +A  +L  + + G +P   ++  ++  + + G   +A   F +M+ K
Sbjct: 172 VLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREK 231

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PPN   +T L+    R G+ +EA   LV+M E GL P    F  +  G  + GK
Sbjct: 232 -FPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK 286


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 146/297 (49%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+ +  K     C+  V++YN+++  LC+ KL   A+ L   M  K 
Sbjct: 160 LINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKR 219

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+  +C  G++ +A   L EM  K  NP V   + LV GL   G +  AK
Sbjct: 220 VFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAK 279

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +V  M+K+G   D+ T+N+L++      E      ++  + ++G+  DV +Y ++I  +
Sbjct: 280 SLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGL 339

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SK  M+DEA  L   +  +   P    Y+ +I G+ + G+ + A  +  EM  +G PPN 
Sbjct: 340 SKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNV 399

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             YT LI    +  +  +A   L ++ + G+      ++++ DGL   G+   A+K+
Sbjct: 400 ITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKV 456



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 143/332 (43%), Gaps = 35/332 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV +A +++ +         V+ Y SL++  C V     A+ L+  M+ K 
Sbjct: 195 IIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKN 254

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T+  LV+  C  GKMREA+  +  M  +G  P V   + L+ G         AK
Sbjct: 255 VNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAK 314

Query: 143 QMVNKMIKQGFVLDLETFN-----------------------------------SLIETI 167
            + N M + G   D+ +++                                   SLI+ +
Sbjct: 315 NVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGL 374

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKSG +   ++    +   G   +V TY  LI A+ K+  +D+A  LL  + + G +   
Sbjct: 375 CKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANM 434

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++ G+ + G+  DA   F ++ +KGH  +   Y+++I    +   F EA   L +
Sbjct: 435 YTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSK 494

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M + G  P +  ++ + +       +D AEK+
Sbjct: 495 MEDKGCVPDAIAYETIINAFFEKDMNDKAEKL 526



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 6/232 (2%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
            +++E GK      A  VFN          V  Y+ ++  L ++K+   A  L   M  +
Sbjct: 305 FLVKEAGK------AKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNE 358

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
             +PD   Y+ L++  C SG++  A +++ EM D+G  P V     L+  L  +  ++ A
Sbjct: 359 NVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKA 418

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             ++ K+  QG   ++ T+N L++ +CK G +    +++  +   G   DV TY I+I  
Sbjct: 419 IALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMING 478

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           + K  + DEA  LL  + + G  P    Y  II   F +   D A     EM
Sbjct: 479 LCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 6/304 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGL--VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P + +L++     H L  +++A++ FN+         ++ +  +L +L + K +   
Sbjct: 10  SIIPNS-TLLLSHTHFHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIV 68

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L +RM   G   +  T  IL+N++C   ++  A     ++   G+ P +     L++G
Sbjct: 69  IHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRG 128

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G ++ +    ++++ QG  LD  ++ +LI  +CK G+    + +   +       D
Sbjct: 129 LCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPD 188

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  Y  +I  + K  ++ +AF L   + E    P    Y  +I G    GQ D AF   +
Sbjct: 189 VVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLN 248

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG---LK 308
           EM +K   PN   +  L+    + G+  EA + +  M + G+ P    ++ + DG   +K
Sbjct: 249 EMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVK 308

Query: 309 NCGK 312
             GK
Sbjct: 309 EAGK 312



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 106/214 (49%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +M    ++    + S++I    K  ++D A+++F      N    V+ Y+SL+  LC+  
Sbjct: 319 IMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSG 378

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A   +  M  +G  P+  TY  L++A C S ++ +A   L+++ D+G    +   +
Sbjct: 379 RINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYN 438

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +LV GL   G L  A+++   ++ +G  +D+ T++ +I  +CK    +  + +   +   
Sbjct: 439 ILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDK 498

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           G   D   Y+ +I A  +  M D+A +LL  +++
Sbjct: 499 GCVPDAIAYETIINAFFEKDMNDKAEKLLREMID 532


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 159/307 (51%), Gaps = 2/307 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I  F   G + +A+++FNK    N +  V  +N L+ A C+        
Sbjct: 256 ISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+++G  P+  TY  L++ +C   ++ +A+     M+  G NP ++   +++ G 
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                 + A  +  +M ++  + D+ T++SLI+ + KSG + + +++   +   G+  ++
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 435

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K   +D+A  LL    + G +P  S Y+ +IKG+ + G+ +DA   F +
Sbjct: 436 CTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFED 495

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KG+  +   YT++I      G F EA   L +M + G  P ++ ++++   L    +
Sbjct: 496 LLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555

Query: 313 HDLAEKI 319
           +D+AEK+
Sbjct: 556 NDMAEKL 562



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 142/297 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++  +      Q  V++YN+++ ++C+VKL + A+ L   M+ KG
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKG 255

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L++ +C  GK+++A +   +M  +   P V   ++LV      G ++  K
Sbjct: 256 ISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGK 315

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M+KQG   +  T+NSL++  C   EV     ++ ++ + G+  D+ +Y I+I   
Sbjct: 316 TVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGF 375

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   +      P    Y+ +I G+ + G+   A     +M  +G PPN 
Sbjct: 376 CKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNI 435

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  ++    +  +  +A   L +  + G  P    + ++  GL   GK + A K+
Sbjct: 436 CTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKV 492



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T ++++  F K G +     VF+       +   + YNSL+   C VK  + A
Sbjct: 290 NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKA 349

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++   M + G  PD ++Y+I++N +C   K  EA    +EM  K   P V     L+ G
Sbjct: 350 KSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDG 409

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A Q+V++M  +G   ++ T+NS+++ +CK+ +V+  + +       G   D
Sbjct: 410 LSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD 469

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           +STY ILI  + ++G +++A ++  +L+  G+      Y  +I+G    G F++A    S
Sbjct: 470 ISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLS 529

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  P+   Y ++I    +      A   L EM   GL
Sbjct: 530 KMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGL 571



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 131/292 (44%), Gaps = 2/292 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A    +K  A       + Y +L+  LC+V     A  L++R+      P+   Y
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY 228

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             ++++ C    + EA +   EM  KG +P V     L+ G    G L+ A  + NKMI 
Sbjct: 229 NTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMIL 288

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    D+ TFN L+   CK G+++    ++  + K G+  +  TY  L+        +++
Sbjct: 289 ENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNK 348

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  + + + + G  P    Y+ +I G  +  +FD+A   F EM  K   P+   Y+ LI 
Sbjct: 349 AKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLID 408

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
              + GR   A   + +M + G+ P    ++ + D L  C  H + + I LL
Sbjct: 409 GLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL--CKTHQVDKAIALL 458



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 113/229 (49%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  +FN          +  Y+ ++   C++K F  A  L + M RK  +PD  TY+ 
Sbjct: 346 VNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSS 405

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++    SG++  A + + +M D+G  P +   + ++  L     ++ A  ++ K   +G
Sbjct: 406 LIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG 465

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D+ T++ LI+ +C+SG++E   +++  +   G   DV  Y I+I      G+ +EA 
Sbjct: 466 FQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEAL 525

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            LL  + ++G  P    Y  II  +F++ + D A     EM  +G P N
Sbjct: 526 ALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 128/280 (45%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F  +  VD+AV +FN+    N       +N +L +L + K +H    L ++M  +G  P+
Sbjct: 60  FHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPN 119

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                IL+N +C  G +  A     ++   G+ P       L +GL   G ++ A    +
Sbjct: 120 LVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHD 179

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++  GF  D  ++ +LI  +CK GE    +++   V    +  +V  Y  +I ++ K  
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           +++EAF L   +V  G  P    Y+ +I G    G+  DA   F++M ++   P+   + 
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFN 299

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +L+    + G+  E       M + G+ P    ++ + DG
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 130/292 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F + GL+  A  VF K          + + +L   LC       A+    +++ 
Sbjct: 124 NILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVA 183

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            GF  D+ +Y  L++  C  G+ R A + LQ +      P V   + ++  +     +  
Sbjct: 184 LGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNE 243

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  + ++M+ +G   D+ T+++LI   C  G+++  ++++  +    +  DV T+ IL+ 
Sbjct: 244 AFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVN 303

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A  K G + E   +   +++ G KP    Y  ++ G     + + A   F+ M   G  P
Sbjct: 304 AFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNP 363

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +   Y+++I    +  +F EA N   EM    + P    +  + DGL   G+
Sbjct: 364 DIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR 415



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L  R++R+   P    +  ++ +   S          Q+M  +G  P +   ++L+ 
Sbjct: 69  AVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILIN 128

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G +  A  +  K++K G+V D  TF +L + +C  G+++     +  V  LG   
Sbjct: 129 CFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHF 188

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  +Y  LI  + K G    A  LL  +  +  +P   +Y  II  M +    ++AF  F
Sbjct: 189 DQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLF 248

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           SEM  KG  P+   Y+ LI+     G+  +A +   +M    + P    F+++ +     
Sbjct: 249 SEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKD 308

Query: 311 GK 312
           GK
Sbjct: 309 GK 310



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++   K   VD A+ +  K      Q  +  Y+ L+  LC+      A  +   +
Sbjct: 437 TYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDL 496

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG+  D   Y I++  +C  G   EA   L +M D G  P  +  ++++  L      
Sbjct: 497 LVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDEN 556

Query: 139 ESAKQMVNKMIKQGFVLDL 157
           + A++++ +MI +G  L+ 
Sbjct: 557 DMAEKLLREMIARGLPLNF 575


>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 482

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 159/361 (44%), Gaps = 39/361 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +  M+   L  SP+T ++I E +   G    AV VF     + C Q +  +N++L 
Sbjct: 111 LWFLVSRMRSCRLGPSPRTFAIIAERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILD 170

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY L +  ++  F  D  +Y I+VN WC   +  +A E L+EM ++G  P
Sbjct: 171 VLCKSKRVEMAYNLFK-ALKGKFKADCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTP 229

Query: 121 PVRGRDLLVQGLLNAGY-----------------------------------LESAKQMV 145
            +   ++++ G   AG                                    ++ A+ + 
Sbjct: 230 NLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVF 289

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           N+M+K G +  + TFN+LI+ +CK   VE  + ++  + K G   +  TY ++I  +   
Sbjct: 290 NQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHV 349

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +  A  L+  + +D  +P    Y  +I+     G+ +     F +M      PN   Y
Sbjct: 350 GEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTY 409

Query: 266 TMLI-TMCGR--GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +LI +M  R      + A   LVEM + G  P    F+ V DGL   G  D A++I  L
Sbjct: 410 NILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSL 469

Query: 323 E 323
           +
Sbjct: 470 Q 470


>gi|242039157|ref|XP_002466973.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
 gi|241920827|gb|EER93971.1| hypothetical protein SORBIDRAFT_01g017690 [Sorghum bicolor]
          Length = 504

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 141/292 (48%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+  E M    L VS +T  L+I   GK GL    VE F K + FN +     +N++L 
Sbjct: 198 MWRLFEEMMDKGLPVSSRTFHLLICASGKAGLRRRLVEGFIKSSTFNYRPFRNAFNAILH 257

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  ++ +     +  +MI +G+ PD  TY +++ A    GK+ +    L EM   G  P
Sbjct: 258 TLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLTP 317

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   +LL+  L       +A  ++N M   G V ++  F +LI+ + ++G +E C   +
Sbjct: 318 DLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVLHFTNLIDGLGRAGNLEACKYFF 377

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I +   AG  +EA R   +++  G  P    Y  +I+G+   
Sbjct: 378 DEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDMLLRGQLPNVYTYNSMIRGLCTV 437

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD AF    +M   G  PN  VY+ L++     G+  +A N +  MT+ G
Sbjct: 438 GEFDKAFAMLKDMDSHGCTPNFSVYSSLVSRLRSAGKDTQANNVIKYMTDKG 489



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 114/268 (42%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q    +YN ++    E       + L   M+ KG     RT+ +L+ A   +G  R   E
Sbjct: 176 QHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDKGLPVSSRTFHLLICASGKAGLRRRLVE 235

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
              + S   + P     + ++  LL        + +  KMI +G+  D+ T+N ++    
Sbjct: 236 GFIKSSTFNYRPFRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVMRAKY 295

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G+++    +   + + GL  D+ TY +L+  + K      A  LL+ + + G  P   
Sbjct: 296 MLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPNVL 355

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            +  +I G+ R G  +    FF EM  KG  P+   YT++I+     G F EA  +  +M
Sbjct: 356 HFTNLIDGLGRAGNLEACKYFFDEMIKKGCDPDVVCYTVMISSYVAAGEFEEAQRFFDDM 415

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G  P    ++ +  GL   G+ D A
Sbjct: 416 LLRGQLPNVYTYNSMIRGLCTVGEFDKA 443



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 8/208 (3%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F+     +G+       +L+++     G +++  ++  +M+ +G  +   TF+ LI    
Sbjct: 166 FIWAGQQEGYQHGTSMYNLVMKVFAECGEVKAMWRLFEEMMDKGLPVSSRTFHLLICASG 225

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL----HNLVEDGHK 224
           K+G     VE +          +   ++    A+    +  E + L+      ++ +G+ 
Sbjct: 226 KAGLRRRLVEGFIKSSTF----NYRPFRNAFNAILHTLLTIEQYSLIEWVHEKMILEGYS 281

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +++  +  G+ D       EM   G  P+   Y +L+ + G+G + + A N 
Sbjct: 282 PDVLTYNVVMRAKYMLGKLDQFHRLLDEMGRDGLTPDLHTYNLLLHVLGKGDKPLAALNL 341

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           L  M+++G  P    F  + DGL   G 
Sbjct: 342 LNYMSDVGCVPNVLHFTNLIDGLGRAGN 369


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 146/301 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + II+ +   G +   V++  +      +  +  Y+S++  LC+         ++R M
Sbjct: 147 SYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREM 206

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD   Y  L++ +C  G  + A +   EM  +   P       L+ GL  +G +
Sbjct: 207 MKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKV 266

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ N+MIK+GF  D  T+ +LI+  CK GE++    ++  + ++GL  +V TY  L
Sbjct: 267 VEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTAL 326

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              + K+G +D A  LLH +   G +   S Y  I+ G+ + G    A     EMK  G 
Sbjct: 327 ADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGL 386

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT L+    + G  V+A   L EM + GL P    F+++ +GL   GK +  E+
Sbjct: 387 HPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGER 446

Query: 319 I 319
           +
Sbjct: 447 L 447



 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 132/253 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + +   K G +D A E+ ++      Q  +  YN+++  LC+      A  L+  M
Sbjct: 322 TYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEM 381

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++A+  +G+M +A+E L+EM D+G  P V   ++L+ GL  +G L
Sbjct: 382 KEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKL 441

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+++G + +  T+NS+++  C    +    E+Y  +C  G+  D +TY IL
Sbjct: 442 EDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNIL 501

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   +VE       S Y  +IKG F+R +  +A   F EM+ +G 
Sbjct: 502 IKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGL 561

Query: 259 PPNRPVYTMLITM 271
             +  +Y + + M
Sbjct: 562 VASAEIYNLFVDM 574



 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 142/306 (46%), Gaps = 3/306 (0%)

Query: 1   MWKTIELMKPYNL-SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           + K ++L+K   L  + P   T S II    K G V    +V  +          ++Y +
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C++     AY L   M  +  VPD   ++ L+     SGK+ EA +   EM  KG
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P       L+ G    G ++ A  + N+M++ G   ++ T+ +L + +CKSGE++   
Sbjct: 281 FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTAN 340

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+ + +C+ GL  ++STY  ++  + KAG I +A +L+  + E G  P    Y  ++   
Sbjct: 341 ELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAY 400

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           ++ G+   A     EM  +G  P    + +L+      G+  +    L  M E G+ P +
Sbjct: 401 YKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNA 460

Query: 298 RCFDLV 303
             ++ +
Sbjct: 461 ATYNSI 466



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 145/298 (48%), Gaps = 4/298 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+ F K G    A ++F++  A       + +++L+  L        A  L   MI+
Sbjct: 219 TTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIK 278

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KGF PD+ TY  L++ +C  G+M++A     +M   G  P V     L  GL  +G L++
Sbjct: 279 KGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDT 338

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +++++M ++G  L++ T+N+++  +CK+G +   V++   + + GL  D  TY  L+ 
Sbjct: 339 ANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMD 398

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A  K G + +A  LL  +++ G +P    +  ++ G+   G+ +D       M  KG  P
Sbjct: 399 AYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMP 458

Query: 261 NRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           N   Y  ++   C R    +    Y   M   G+ P S  ++++  G  +C   ++ E
Sbjct: 459 NAATYNSIMKQYCIRNNMRISTEIYR-GMCAQGVVPDSNTYNILIKG--HCKARNMKE 513



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 131/269 (48%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+ +L  +     A+ L+ RM  KG +PD  +Y  +++ +C  G++++  + ++EM 
Sbjct: 113 YNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQ 172

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +     ++  L  +G +   ++++ +M+K+G   D   + +LI+  CK G  +
Sbjct: 173 LKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQ 232

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +++  +    +  D   +  LI  +S +G + EA +L + +++ G +P    Y  +I
Sbjct: 233 AAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALI 292

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+   AF   ++M   G  PN   YT L     + G    A   L EM   GL 
Sbjct: 293 DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQ 352

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                ++ + +GL  C   ++ + ++L+E
Sbjct: 353 LNISTYNTIVNGL--CKAGNILQAVKLME 379



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 99/218 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK   L     T + +++ + K G +  A E+  +      Q  V+ +N L+  L
Sbjct: 376 KLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGL 435

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C          L++ M+ KG +P+  TY  ++  +C    MR + E  + M  +G  P  
Sbjct: 436 CMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDS 495

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++G   A  ++ A  +  +M+++ F L   ++N+LI+   K  ++    +++  
Sbjct: 496 NTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEE 555

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           + + GL A    Y + +    + G ++    L    +E
Sbjct: 556 MRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIE 593


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T SL+I    K   VD A++VF +      +  +  Y +LL +L + +    A  +   +
Sbjct: 635 TYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNEL 694

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                VPD   Y I+VN    S ++ EA + +  M ++   P +     L+ GL  +G L
Sbjct: 695 QESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRL 754

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  M  KM ++G   D+  + SL++ + K G++   + ++ ++ K     DV TY  L
Sbjct: 755 EEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSL 814

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++ K G ++EA+    N +  G  P   +Y+ +I    ++G  D A   F EM+ +  
Sbjct: 815 IDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQC 874

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           PPN   Y  L++   + GR   A   L EM ++G  P    ++++ DG+   G  D AE
Sbjct: 875 PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAE 933



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 151/321 (47%), Gaps = 2/321 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E+MK +    +  T + +++  GK G +D AV +  +     C+  V+ Y+SL+ + 
Sbjct: 549 KLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASF 608

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +      + +L   M+RKG V D  TY++++N  C S  + +A +    M ++G  P +
Sbjct: 609 YKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLL 668

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+  L+    ++ A Q+ N++ +   V D   +N ++  + KS  V+   ++  S
Sbjct: 669 GNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDS 728

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +    +  D+ TY  L+  + K+G ++EAF +   + E+GH+P    Y  ++  + + G+
Sbjct: 729 MKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGK 788

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
              A   F  M  K   P+   Y+ LI   G+ GR  EA  +       G TP    +  
Sbjct: 789 LSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSS 848

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           + D     G  D A  +EL E
Sbjct: 849 LIDSFGKKGMVDRA--LELFE 867



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 141/293 (48%)

Query: 3    KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
            K ++ MK  N+     T + +++  GK G ++ A  +F K T    +  V+ Y SL+  L
Sbjct: 724  KLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVL 783

Query: 63   CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +      A  + R M +K  VPD  TY+ L+++    G++ EA  F +    KG  P V
Sbjct: 784  GKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNV 843

Query: 123  RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                 L+      G ++ A ++  +M ++    ++ T+N+L+  + K+G +    ++   
Sbjct: 844  GVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEE 903

Query: 183  VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
            + K+G   D+ TY ILI  V K GM+DEA      + E G  P    +  +I+ + +  +
Sbjct: 904  MEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDK 963

Query: 243  FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +A   F  M+ +G+ P+   Y +LI + GR G+  EAA    EM   G  P
Sbjct: 964  LLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMP 1016



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 7/292 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWK           +S   L+ ++  FG    V  A+E+FN+  +F C     +YN +L 
Sbjct: 208 MWKE-------GHRISMHLLTSLLRTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLE 260

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +   +H A  +  ++ +    PD +T+ I V+++  SG++  A E +QEM   G +P
Sbjct: 261 LLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDP 320

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+  L+ +G ++ A +  N M       ++ T+ +L+  + K+G +E   E++
Sbjct: 321 GVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF 380

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +     D   Y  LI  + KAG  D A  L   + + G  P    Y  +I  + + 
Sbjct: 381 VEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKA 440

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+  +A+  F ++K +G  P+   Y  LI + G+GG+  +    + EM E G
Sbjct: 441 GRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 35/350 (10%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL  SP   T + ++    K G ++ A EVF +    NC    + YN+L+  L +     
Sbjct: 350 NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD 409

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L + M  +G VP+ RTY I+++    +G+  EA +   ++ ++G  P V   + L+
Sbjct: 410 MACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLI 469

Query: 130 QGLLNAGYLESAKQMVNKMIKQGF-------------------------------VLDLE 158
             L   G ++    ++ +M+++G                                 L   
Sbjct: 470 DVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEI 529

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+N+L+     +G V+  V++   + K      V TY  L+  + KAG +DEA  LL  +
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            + G +P    Y+ ++   ++R Q +++   F EM  KG   +   Y+++I    +    
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            +A +    M E G+ P+   +  +   L    K D A +I  EL E SL
Sbjct: 650 DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSL 699



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 4/292 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+++FN+    +      +YN ++  L +      A  L+  M  +  +PD  TY  
Sbjct: 684 IDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTS 743

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++    SG++ EA     +M+++G  P V     L+  L   G L  A  +   M K+ 
Sbjct: 744 LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D+ T++SLI+++ K G VE     + +    G   +V  Y  LI +  K GM+D A 
Sbjct: 804 CVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRAL 863

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +      P    Y  ++ G+ + G+ + A     EM+  G  P+   Y +LI   
Sbjct: 864 ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGV 923

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD-LAEKIELLE 323
           G+ G   EA +Y   M E G+ P    F   T  +++ GK D L E  EL +
Sbjct: 924 GKMGMVDEAESYFKRMKEKGIVPDVITF---TSLIESLGKVDKLLEACELFD 972



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 121/239 (50%)

Query: 23   IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
            +++  GK G + +A+ +F       C   V+ Y+SL+ +L +      AY      I KG
Sbjct: 779  LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 83   FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              P+   Y+ L++++   G +  A E  +EM  +   P +   + L+ GL  AG L  A+
Sbjct: 839  CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAE 898

Query: 143  QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +++ +M K G V DL T+N LI+ + K G V+     +  + + G+  DV T+  LI ++
Sbjct: 899  KLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL 958

Query: 203  SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K   + EA  L  ++ E+G+ P    Y  +I  + R G+  +A   F EMK+KG  P+
Sbjct: 959  GKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 3/306 (0%)

Query: 14   SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            S+ P T   ++++    K   VD A ++ +     N    +  Y SLL  L +      A
Sbjct: 698  SLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEA 757

Query: 72   YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            + +  +M  +G  PD   Y  L++     GK+  A    + M+ K   P V     L+  
Sbjct: 758  FNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDS 817

Query: 132  LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L   G +E A       I +G   ++  ++SLI++  K G V+  +E++  + +     +
Sbjct: 818  LGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPN 877

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            + TY  L+  ++KAG ++ A +LL  + + G  P    Y  +I G+ + G  D+A  +F 
Sbjct: 878  IVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFK 937

Query: 252  EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             MK KG  P+   +T LI   G+  + +EA      M E G  P    ++++ D L   G
Sbjct: 938  RMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAG 997

Query: 312  K-HDLA 316
            K H+ A
Sbjct: 998  KVHEAA 1003



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 92/178 (51%)

Query: 21   SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
            S +I+ FGK G+VD A+E+F +     C   ++ YN+LL  L +    + A  L+  M +
Sbjct: 847  SSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEK 906

Query: 81   KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
             G VPD  TY IL++     G + EA+ + + M +KG  P V     L++ L     L  
Sbjct: 907  VGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLE 966

Query: 141  AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            A ++ + M ++G+   + T+N LI+ + ++G+V     +++ +   G   D  T  I+
Sbjct: 967  ACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIM 1024



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 105/237 (44%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           + G+     TY +++     + +     + L  M  +G    +     L++   +   + 
Sbjct: 175 QDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVS 234

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++ N+M   G       +N ++E + K G     V ++  + +  +  D  T++I +
Sbjct: 235 GALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFV 294

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            + +++G +D A   +  +++ G  P    +  +I  + + G  D+A  FF+ MK     
Sbjct: 295 HSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCS 354

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PN   YT L+    + GR  EA    VEM E   +P +  ++ + DGL   G+ D+A
Sbjct: 355 PNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMA 411


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 3/289 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    +   ++ A ++  +     C     +YN+L+    + K F  A+  +  M
Sbjct: 12  TFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++   +P   TY  +V+  C +G+ ++A + L EM DKG +P +   +++V+GL     L
Sbjct: 72  VKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK+M+ +M  +G+  D+ T+NS I+ +CK   V+   E    + ++ +  DV +Y  +
Sbjct: 132 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVD---EARKFLARMPVTPDVVSYTTV 188

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +D A R+L  +   G  P    Y+ +I G  + G+ + A      M   G 
Sbjct: 189 INGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 248

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  L+    R G   +A + LVEM   G TP    ++   DGL
Sbjct: 249 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 297



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 131/279 (46%), Gaps = 3/279 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    S +  T ++I+E   +   +D A ++  +         V+ YNS +  L
Sbjct: 101 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A   + RM      PD  +Y  ++N  C SG +  A   L +M+++G  P V
Sbjct: 161 CKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDV 217

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G +E A  +++ M+K G   ++  +NSL+  + + G +    +M   
Sbjct: 218 VTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE 277

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G   DV +Y   I  + KA  + +A  +   +VE G  P  S Y+ +++ + ++ +
Sbjct: 278 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKE 337

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
            DDA     + + K    +  +YT+L+    +GGRF EA
Sbjct: 338 LDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEA 376



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 149/318 (46%), Gaps = 6/318 (1%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V+P  +S   +I    K G +D+A  + ++ T   C   V+ Y+SL+   C+      
Sbjct: 176 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  M++ G  P+   Y  L+ A    G + +A++ L EM  +GF P V   +  + 
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL  A  ++ AK + ++M+++G   +  +++ L+E +CK  E++  + +     +     
Sbjct: 296 GLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIV 355

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           D+  Y +L+  + K G  DEA  L   ++++   +P    Y  ++    +R Q D A   
Sbjct: 356 DILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQI 415

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             +M ++ +  N   + +L+       R  +A   L+ M + G  P    +  + D +  
Sbjct: 416 HKQM-LERNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCK 474

Query: 310 CGKHDLAEKIELLEVSLR 327
           CGK   A  +EL E +++
Sbjct: 475 CGKS--AAALELFEEAVK 490



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 119/250 (47%), Gaps = 5/250 (2%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI K   PD  T+AIL+   C S ++ +A++ L  M + G  P     + L+ G   A  
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A + + +M+K   +  + T+ ++++ +CK+G  +  V++   +   G   ++ TY +
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + +   +DEA ++L  +   G+ P    Y   IKG+ +  + D+A  F + M +  
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV-- 178

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT +I    + G    A+  L +MT  G TP    +  + DG   C   ++  
Sbjct: 179 -TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGF--CKGGEVER 235

Query: 318 KIELLEVSLR 327
            + LL+  L+
Sbjct: 236 AMGLLDSMLK 245



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 37/296 (12%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N   +P   T S +I+ F K G V+ A+ + +      C+  ++ YNSLL AL  +    
Sbjct: 210 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 269

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++  M R+GF PD  +Y   ++  C + ++++A+     M ++G  P      +LV
Sbjct: 270 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLV 329

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------------------ 171
           + L     L+ A  +V +  ++  ++D+  +  L++ +CK G                  
Sbjct: 330 EELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKIC 389

Query: 172 --EVEFCVEMYYSVCKLGL---------------CADVSTYKILIPAVSKAGMIDEAFRL 214
             +V F   M  S CK                  C +V T+ IL+  +     + +A  +
Sbjct: 390 EPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCVDDRLSDAETM 449

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           L  +V++G  P    Y  ++  M + G+   A   F E    G  P+   Y+ LIT
Sbjct: 450 LLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALIT 505



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 123/267 (46%), Gaps = 14/267 (5%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +  + S+++EE  K   +D+A+ +  +         +LLY  LL  LC+   F  A AL 
Sbjct: 321 NASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALF 380

Query: 76  RRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            +++ +    PD   Y +++++ C   ++ +A +  ++M ++     V   ++LV GL  
Sbjct: 381 SKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTW-NILVHGLCV 439

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              L  A+ M+  M+ +GF+ D  T+ +L++ +CK G+    +E++    K G   DV T
Sbjct: 440 DDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT 499

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  +    M +EA+ L   L         +L+  +I G    G  D     F E+ 
Sbjct: 500 YSALITGLVHENMAEEAYLLFTKLD-------VALWNAMILGYAENGSGDLGLKLFVELI 552

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEA 281
                PN   +   I+     G+ V+A
Sbjct: 553 ESDVEPNARTFGKEIS-----GKLVKA 574



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 30/227 (13%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++++   K   +D A+++  +    NC   V+ +N L+  LC       A  ++  M+ 
Sbjct: 397 NVMLDSHCKRRQIDKALQIHKQMLERNCCN-VVTWNILVHGLCVDDRLSDAETMLLTMVD 455

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +GF+PD  TY  LV+A C  GK   A E  +E    G  P V     L+ GL++    E 
Sbjct: 456 EGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEE 515

Query: 141 AKQMVNKM-------IKQGFV------LDLETFNSLIETICKSGEVEFCVE--------- 178
           A  +  K+       +  G+       L L+ F  LIE+  +     F  E         
Sbjct: 516 AYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAE 575

Query: 179 -------MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
                  ++    K G   D+     LI   +K G ++EA R+ +++
Sbjct: 576 SLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +++   K G    A+E+F +     C   V+ Y++L+  L    +   AY L  ++
Sbjct: 464 TYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKL 523

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG-LLNAGY 137
                  D   +  ++  +  +G      +   E+ +    P  R     + G L+ A  
Sbjct: 524 -------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVKAES 576

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           L  A+ + ++ +K GF  DL   N+LI+   K G++E    ++YS+
Sbjct: 577 LGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDLEEARRIFYSM 622


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 131/258 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+   KHG +D A E+ ++      Q  V +YNS++  +C+      A  L++ M
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  +++A+C  G + +A + LQEM D+G  P V   ++L+ G    G L
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   +++  M+++G V D  T+N+L++  C    +    ++Y  +   G+  D +TY IL
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNIL 649

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   ++E G+ P  + Y  +IK  +++ +  +A   F EM+  G 
Sbjct: 650 IKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGL 709

Query: 259 PPNRPVYTMLITMCGRGG 276
             +  +Y   + MC   G
Sbjct: 710 VADGEIYNFFVDMCYEEG 727



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 139/289 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I+ +   G +  A+++ +       +     YNS++  LC++     A  ++R M
Sbjct: 295 SYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREM 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD   Y  L++ +   G +R A ++  EM  K  +P       L+QG    G +
Sbjct: 355 MSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKV 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + + ++MI +G   D  T+ +LI+  CK+GE+     ++  + ++G+  ++ TY  L
Sbjct: 415 IEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGAL 474

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D A  LL  + + G +    +Y  ++ G+ + G  + A     EM++ G 
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGI 534

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   YT +I    R G   +A   L EM + GL P    F+++ +G 
Sbjct: 535 DPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 148/325 (45%), Gaps = 2/325 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I++   Y +S +  + ++II    + G V  A  +  +    +    V+ Y++++   C 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+  M  KG  P++ TY  ++   C  GK  EA++ L+EM  +   P    
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVV 365

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G++ +A +  ++M+ +    D  T+ +LI+   + G+V     +++ + 
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  D  TY  LI    KAG +  AF L + +V+ G  P    Y  +I G+ + G+ D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     EM+ KG   N  +Y  ++    + G   +A   + EM   G+ P +  +  V 
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 305 DGLKNCGKHDLAEKI--ELLEVSLR 327
           D     G  D A K+  E+L+  L+
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQ 570



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 133/289 (46%), Gaps = 2/289 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I+ FG+ G V     +F++  +   +   + Y +L+   C+      A+
Sbjct: 394 ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAF 453

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L   M++ G  P+  TY  L++  C  G++  A E L EM  KG    V   + +V G+
Sbjct: 454 SLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGI 513

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +E A +++ +M   G   D  T+ ++I+  C+ G+++   ++   +   GL   V
Sbjct: 514 CKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTV 573

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+ +L+      GM+++  RLL  ++E G  P    Y  ++K    R   +     +  
Sbjct: 574 VTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKR 633

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           M+ +G  P+   Y +LI    +     EA     EM E G  P    ++
Sbjct: 634 MRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYN 682



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 107/243 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y +L+    ++     A      M+ K   PD  TY  L+  +   GK+ E Q    E
Sbjct: 364 VVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G  P       L+     AG + +A  + N+M++ G   ++ T+ +LI+ +CK GE
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++   E+   + K GL  +V  Y  ++  + KAG I++A +L+  +   G  P    Y  
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTT 543

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I    R G  D A     EM  +G  P    + +L+      G   +    L  M E G
Sbjct: 544 VIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKG 603

Query: 293 LTP 295
           + P
Sbjct: 604 IVP 606



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 3/221 (1%)

Query: 3   KTIELMKPYNLS-VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + I+LMK   ++ + P   T + +I+ + + G +D A ++  +      Q  V+ +N L+
Sbjct: 521 QAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM 580

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C + +      L+  M+ KG VPD  TY  L+   C    M    +  + M ++G  
Sbjct: 581 NGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVA 640

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++L++G   A  L+ A  +  +MI++G+V  + ++N+LI+   K  ++    E+
Sbjct: 641 PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEAREL 700

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +  +   GL AD   Y   +    + G ++    L    +E
Sbjct: 701 FEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIE 741



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 37/260 (14%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K + P+   + I        G + EA++ L ++   G    V   +  +  + N    E 
Sbjct: 184 KYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNS--EG 241

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
            +  +    + G   +  ++N +I ++C+ G+V+    +   +       DV +Y  +I 
Sbjct: 242 IEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVID 301

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKP---------------------------------FP 227
                G + +A +L+ ++   G KP                                  P
Sbjct: 302 GYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIP 361

Query: 228 S--LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +Y  +I G F+ G    A  +F EM  K   P+   YT LI   G+GG+ +E  N  
Sbjct: 362 DNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLF 421

Query: 286 VEMTEMGLTPISRCFDLVTD 305
            EM   GL P    +  + D
Sbjct: 422 HEMISRGLKPDEVTYTTLID 441


>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
 gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
          Length = 694

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 148/298 (49%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G  D ++E++ +     C+  +  Y+SL+  LC+V    GA  + + M
Sbjct: 257 TYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++  V D  TY  L+N +C +GK++E+ E    M  +  +  V   ++ ++GL     +
Sbjct: 317 VKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMMGKENCHNVV-SYNIFIRGLFENRKV 375

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   + ++G   D  T+  LI  +CK+G +   +++       G   D   Y  +
Sbjct: 376 EEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSI 435

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +SK G +DEA  ++H + + G +  P +  P+I G  R  + ++A CFF EM+ KG 
Sbjct: 436 VDGLSKQGRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGC 495

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P    Y  LI    +  RF +A +++ EM E    P    + L+ DGL    K D+A
Sbjct: 496 SPTVVSYNTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMA 553



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 119/240 (49%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +  M  Y   +SP   + +I  F +   ++ A+  F +     C   V+ YN+L+  LC+
Sbjct: 452 VHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTLINGLCK 511

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  AY+ ++ M+ K + PD  TY++L++  C   K+  A    +++  KG  P V  
Sbjct: 512 AERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTM 571

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+ GL +AG +E A  + + M +   + +L T N+L++ + K+ E E    ++  + 
Sbjct: 572 HNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMF 631

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G   D+ +Y I +  +   G I +   L  + +++G  P    +  +++ + + G  D
Sbjct: 632 KNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGPLD 691



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 4/289 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFA 61
           + +EL+K      +   +  +++ + K  + + A++ F K    F C+  +  YN+LL A
Sbjct: 64  RIVELIKTQKCKCTEDVVLTVLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNA 123

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             E  L   A + +      G +P+ +TY IL+       +  EA+  L  M  K   P 
Sbjct: 124 FIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPD 183

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     ++ G++ +G L SA ++ ++M ++G V D+  +N +I+   K G+     E++ 
Sbjct: 184 VYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKRGDYVQGKEIWE 243

Query: 182 SVCKLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
            + K G C   +V TY ++I  + K G  DE+  +   + ++  +     Y+ +I G+  
Sbjct: 244 RLVK-GSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICGLCD 302

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            G  D A   + EM  +    +   Y  L+    R G+  E+    V M
Sbjct: 303 VGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKIKESFELWVMM 351



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 133/301 (44%), Gaps = 1/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F + G +  + E++      NC   V+ YN  +  L E +    A ++   +
Sbjct: 327 TYNALLNGFCRAGKIKESFELWVMMGKENCHN-VVSYNIFIRGLFENRKVEEAISVWELL 385

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G   D  TY +L++  C +G + +A + L+E  D G          +V GL   G +
Sbjct: 386 RRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQGRV 445

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +V++M K G  L     N LI    ++ ++E  +  +  +   G    V +Y  L
Sbjct: 446 DEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSYNTL 505

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA    +A+  +  ++E   KP    Y+ ++ G+ +  + D A   + ++ +KG 
Sbjct: 506 INGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGL 565

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+  ++ +L+      G+  +A      M +    P     + + DGL    + ++A  
Sbjct: 566 EPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASV 625

Query: 319 I 319
           I
Sbjct: 626 I 626



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 138/309 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL++         T  ++I    K+G ++ A+++  +      +     Y+S++  L + 
Sbjct: 383 ELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAKDGGDKLDAFAYSSIVDGLSKQ 442

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++ +M + G          L+N +  + K+ EA  F +EM  KG +P V   
Sbjct: 443 GRVDEALGIVHQMDKYGCELSPHVCNPLINGFVRASKLEEAICFFREMETKGCSPTVVSY 502

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A     A   V +M+++ +  D+ T++ L++ +C+  +++  + ++  V  
Sbjct: 503 NTLINGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQVLV 562

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  DV+ + IL+  +  AG I++A  L  N+ +    P    +  ++ G+++  + + 
Sbjct: 563 KGLEPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEM 622

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   ++ M   G  P+   Y + +      GR  +      +  + G+ P S  + ++  
Sbjct: 623 ASVIWACMFKNGFQPDIISYNITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVR 682

Query: 306 GLKNCGKHD 314
            +   G  D
Sbjct: 683 AVLKLGPLD 691



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 4/136 (2%)

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           CK G    + +Y  L+ A  +A ++++A   L      G  P    Y  +IK   ++ QF
Sbjct: 110 CKPG----IRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQF 165

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +A      M  K   P+   Y  +I    + G  V A     EM E GL P   C++++
Sbjct: 166 VEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIM 225

Query: 304 TDGLKNCGKHDLAEKI 319
            DG    G +   ++I
Sbjct: 226 IDGFFKRGDYVQGKEI 241



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 52/110 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +++A+ +++     NC   ++ +N+L+  L + +    A  +   M + GF PD  +Y
Sbjct: 583 GKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISY 642

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            I +   CS G++ +      +    G  P      +LV+ +L  G L+S
Sbjct: 643 NITLKGLCSCGRISDGIALFDDALKNGILPTSITWYILVRAVLKLGPLDS 692



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 3/127 (2%)

Query: 198 LIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ++ A +K+ M +EA      + E  G KP    Y  ++         + A  F +  +  
Sbjct: 84  VLKAYAKSKMPNEALDCFQKMEEIFGCKPGIRSYNALLNAFIEANLLEKAESFLAYFETV 143

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  PN   Y +LI +  +  +FVEA   L  M    L P    +  V +G+   G  DL 
Sbjct: 144 GILPNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSG--DLV 201

Query: 317 EKIELLE 323
             +E+ +
Sbjct: 202 SALEVFD 208


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           ++ +G+ G V  AV VF +   ++C+  V  YN+++  L +   F  A+ +  RM  +G 
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGI 142

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD  ++ I + ++C + +   A   L  MS +G    V     +V G     + +   +
Sbjct: 143 TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYE 202

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  KM+  G  L L TFN L+  +CK G+V+ C ++   V K G+  ++ TY   I  + 
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLC 262

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           + G +D A R++  L++ G KP    Y  +I G+ +  +F +A  +  ++  +G  P+  
Sbjct: 263 QKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSF 322

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            Y  LI    +GG    A   LV     G  P    +  + DGL + G+ + A
Sbjct: 323 TYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRA 375



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 146/308 (47%), Gaps = 3/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+     G  + A+ +FN+      +  V+LYN+L+  L    L   A  L   M
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +P+ +T+ ILVN  C  G + +A   ++ M  KG+ P +   ++L+ G      +
Sbjct: 418 SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKM 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A ++++ M+  G   D+ T+NSL+  +CK+ + E  +E Y ++ + G   ++ T+ IL
Sbjct: 478 ENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKG 257
           + ++ +   +D+A  LL  +      P    +  +I G  + G  D A+  F +M ++  
Sbjct: 538 LESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYM 597

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              + P Y ++I           A     EM +  L P    + L+ DG    G  DL  
Sbjct: 598 VSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGY 657

Query: 318 K--IELLE 323
           K  +E++E
Sbjct: 658 KFLLEMME 665



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 123/262 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+  +   A  ++   +  GFVPD+ TY  L++  C  G+   A     E  
Sbjct: 324 YNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEAL 383

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V   + L++GL N G +  A Q+ ++M ++G + +++TFN L+  +CK G V 
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVS 443

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +   G   D+ T+ ILI   S    ++ A  +L  ++++G  P    Y  ++
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLL 503

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +++D    +  M  KG  PN   + +L+    R  +  +A   L EM    + 
Sbjct: 504 NGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVN 563

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P +  F  + DG    G  D A
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGA 585



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 136/302 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S+   T + ++    K G V    ++ +K         +  YN  +  LC+      A 
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAV 271

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++ R+I +G  PD  TY  L+   C + K +EA+ +L ++ ++G  P     + L+ G 
Sbjct: 272 RMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGY 331

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A++++   +  GFV D  T+ SLI+ +C  GE    + ++      G+  +V
Sbjct: 332 CKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  +S  G+I EA +L   + E G  P    +  ++ G+ + G   DA      
Sbjct: 392 ILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKV 451

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG+ P+   + +LI       +   A   L  M + G+ P    ++ + +GL    K
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSK 511

Query: 313 HD 314
           ++
Sbjct: 512 YE 513



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 133/317 (41%), Gaps = 38/317 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+     GL+  A ++ ++ +       V  +N L+  LC++     A  L++ MI KG
Sbjct: 397 LIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           + PD  T+ IL++ + +  KM  A E L  M D G +P V   + L+ GL      E   
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVM 516

Query: 143 QMVNKMIKQGFVLDLETFNSLIETIC---------------------------------- 168
           +    M+++G   +L TFN L+E++C                                  
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGF 576

Query: 169 -KSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            K+G+++    ++  + ++ + +    TY I+I A ++   +  A +L   +V+    P 
Sbjct: 577 CKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPD 636

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  ++ G  + G  D  + F  EM   G  P+      +I       R  EAA  + 
Sbjct: 637 GYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIH 696

Query: 287 EMTEMGLTP--ISRCFD 301
            M + GL P  ++  FD
Sbjct: 697 RMVQKGLVPEAVNTIFD 713



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 110/265 (41%), Gaps = 35/265 (13%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y   +  +   GK++EA    + M      P V   + ++  L+++GY + A ++  +M 
Sbjct: 79  YVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMR 138

Query: 150 KQGFVLDLETFNSLIETICKSGE--------------------VEFCV------------ 177
            +G   D+ +F   +++ C++                      V +C             
Sbjct: 139 DRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKD 198

Query: 178 ---EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  +   G+   +ST+  L+  + K G + E  +LL  +++ G  P    Y   I
Sbjct: 199 EGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFI 258

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G+ ++G+ D A      +  +G  P+   Y  LI    +  +F EA  YL ++   GL 
Sbjct: 259 QGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLE 318

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P S  ++ +  G    G   LAE+I
Sbjct: 319 PDSFTYNTLIAGYCKGGMVQLAERI 343



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 5/153 (3%)

Query: 5   IELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-LYNSLLFA 61
           +E MK  N SV+P   T   +I+ F K+G +D A  +F K        C    YN ++ A
Sbjct: 554 LEEMK--NKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNIIIHA 611

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             E      A  L + M+ +   PD  TY ++V+ +C +G +    +FL EM + GF P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPS 671

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +     ++  L     +  A  ++++M+++G V
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLV 704


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 37/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+ +     S+II+   KHG +DNA  +FN+         ++ YN L+   C    
Sbjct: 352 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 411

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L+R MI++   P+  T+++L++++   GK+REA+E  +EM  +G  P       
Sbjct: 412 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 471

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G     +L+ A QMV+ M+ +G   ++ TFN LI   CK+  ++  +E++  +   G
Sbjct: 472 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 531

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF--------------------- 226
           + AD  TY  LI    + G ++ A  L   +V     P                      
Sbjct: 532 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 591

Query: 227 --------------PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                           +Y  II GM    + DDA+  F  + +KG  P    Y ++I   
Sbjct: 592 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 651

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G   EA     +M E G  P    ++++     + G  D  + ++L+E
Sbjct: 652 CKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRA--HLGDGDATKSVKLIE 700



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +  A E+  +          + Y SL+   C+      A  ++  M
Sbjct: 433 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 492

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P+ RT+ IL+N +C + ++ +  E  ++MS +G        + L+QG    G L
Sbjct: 493 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 552

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M+ +    ++ T+  L++ +C +GE E  +E++  + K  +  D+  Y I+
Sbjct: 553 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 612

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  +D+A+ L  +L   G KP    Y  +I G+ ++G   +A   F +M+  GH
Sbjct: 613 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 672

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y +LI      G   ++   + E+   G +  +    +V D L +
Sbjct: 673 APDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 723



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ ++      G    A+ + +K   + CQ   + Y  +L  +C+      A  L+R+M
Sbjct: 293 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM 352

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    D   Y+I+++  C  G +  A     EM  KG    +   ++L+ G  NAG  
Sbjct: 353 EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRW 412

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++  MIK+    ++ TF+ LI++  K G++    E++  +   G+  D  TY  L
Sbjct: 413 DDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL 472

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D+A +++  +V  G  P    +  +I G  +  + DD    F +M ++G 
Sbjct: 473 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGV 532

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-- 316
             +   Y  LI      G+   A     EM    + P    + ++ DGL + G+ + A  
Sbjct: 533 VADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALE 592

Query: 317 --EKIE 320
             EKIE
Sbjct: 593 IFEKIE 598



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 4/296 (1%)

Query: 29  KHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           + GLVD    +A+++F           V+ ++ L  A+ + K +    AL ++M  KG  
Sbjct: 159 RSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIA 218

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            +  T +I++N +C   K+  A   + ++   G+ P       L+ GL   G +  A ++
Sbjct: 219 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALEL 278

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V++M++ G   DL T N+L+  +C SG+    + +   + + G   +  TY  ++  + K
Sbjct: 279 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 338

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G    A  LL  + E   K     Y+ II G+ + G  D+AF  F+EM++KG   N   
Sbjct: 339 SGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 398

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           Y +LI      GR+ + A  L +M +  + P    F ++ D     GK   AE++ 
Sbjct: 399 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELH 454



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 135/312 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M  Y    +  T   ++    K G    A+E+  K    N +   + Y+ ++  LC+
Sbjct: 314 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 373

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L   M  KG   +  TY IL+  +C++G+  +  + L++M  +  NP V  
Sbjct: 374 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 433

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+   +  G L  A+++  +MI +G   D  T+ SLI+  CK   ++   +M   + 
Sbjct: 434 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 493

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++ T+ ILI    KA  ID+   L   +   G       Y  +I+G    G+ +
Sbjct: 494 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 553

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +  PPN   Y +L+      G   +A     ++ +  +      ++++ 
Sbjct: 554 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 613

Query: 305 DGLKNCGKHDLA 316
            G+ N  K D A
Sbjct: 614 HGMCNASKVDDA 625



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A++ + ++I+ G+ P+  T++ L+N  C  G++ EA E +  M + G  P +   + LV 
Sbjct: 240 AFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVN 299

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL  +G    A  +++KM++ G   +  T+  ++  +CKSG+    +E+   + +  +  
Sbjct: 300 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 359

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y I+I  + K G +D AF L + +   G       Y  +I G    G++DD     
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +M  +   PN   +++LI    + G+  EA     EM   G+ P +  +  + DG    
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 479

Query: 311 GKHDLAEKIELLEVS 325
              D A ++  L VS
Sbjct: 480 NHLDKANQMVDLMVS 494



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 7/314 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS++I  F +   +  A     K      +   + +++L+  LC       A  L+ RM
Sbjct: 223 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 282

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  T   LVN  C SGK  EA   + +M + G  P       ++  +  +G  
Sbjct: 283 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 342

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++ KM ++   LD   ++ +I+ +CK G ++    ++  +   G+  ++ TY IL
Sbjct: 343 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 402

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I     AG  D+  +LL ++++    P    ++ +I    + G+  +A     EM  +G 
Sbjct: 403 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 462

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   YT LI   C      ++ AN +V+ M   G  P  R F+++ +G   C  + + 
Sbjct: 463 APDTITYTSLIDGFCKEN--HLDKANQMVDLMVSKGCDPNIRTFNILINGY--CKANRID 518

Query: 317 EKIELL-EVSLRSV 329
           + +EL  ++SLR V
Sbjct: 519 DGLELFRKMSLRGV 532



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 40/283 (14%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++LM       + +T +++I  + K   +D+ +E+F K +        + YN+L+   
Sbjct: 487 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 546

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           CE+   + A  L + M+ +   P+  TY IL++  C +G+  +A E  +           
Sbjct: 547 CELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE----------- 595

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                                   K+ K    LD+  +N +I  +C + +V+   +++ S
Sbjct: 596 ------------------------KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 631

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+   V TY I+I  + K G + EA  L   + EDGH P    Y  +I+     G 
Sbjct: 632 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGD 691

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              +     E+K  G   +     M+I M        + ANY 
Sbjct: 692 ATKSVKLIEELKRCGFSVDASTIKMVIDMLSD-----DKANYF 729


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 138/289 (47%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM+  N   + +T + +I  F K   V  A+ + +K         ++ YNSL+   C+  
Sbjct: 414 LMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAG 473

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
            F  AY L+  +   G VPD+ TY++ ++  C S +M EA +    + +KG         
Sbjct: 474 HFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYT 533

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   AG ++ A  ++ +M  +  + +  T+NSLI  +CK G+V+  + M  ++ K+
Sbjct: 534 ALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKM 593

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+   V+TY ILI  + + G  D A R+ + +V  GHKP    Y   I      G   +A
Sbjct: 594 GVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEA 653

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               + M   G  P+   YT+LI+   R G   +A N L  M + G  P
Sbjct: 654 EGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDP 702



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 141/302 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++II     +      +++FN+    +C+  V  Y  ++ A+C+ +    +  ++  
Sbjct: 320 RTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNE 379

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ KG VP   TY  L+  +C  G++  A E L  M      P  R  + L+ G     +
Sbjct: 380 MMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKH 439

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A  +++KM++      L T+NSLI   CK+G  +   ++   + + GL  D  TY +
Sbjct: 440 VHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSV 499

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            I  + K+  ++EA  L ++L E G K    +Y  +I G  + G+ D+A      M  + 
Sbjct: 500 FIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSED 559

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y  LI    + G+  E  + +  M++MG+ P    + ++ + +   G  D A 
Sbjct: 560 CLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHAN 619

Query: 318 KI 319
           ++
Sbjct: 620 RV 621



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 131/293 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + G ++ A+E+     + NC+     YN L+    + K  H A  L+ +M
Sbjct: 391 TYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKM 450

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     P   TY  L++  C +G    A + L  + + G  P      + +  L  +  +
Sbjct: 451 LESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRM 510

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  + N + ++G   +   + +LI+  CK+G+++  + +   +       + STY  L
Sbjct: 511 EEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSL 570

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  V K G + E   ++ N+ + G KP  + Y  +I+ M R G FD A   F++M   GH
Sbjct: 571 IYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGH 630

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P+   YT  I      G   EA   +  M E G+ P S  + L+    +  G
Sbjct: 631 KPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 146/317 (46%), Gaps = 4/317 (1%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K +   +SP   T + +I  + ++  V++A +VFN      C++  + Y +++  LCE  
Sbjct: 239 KIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAG 298

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
                 +L ++M      P  RTY ++++A   + +  E  +   EM ++   P V    
Sbjct: 299 RIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYT 358

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           ++V  +     L+ +++++N+M+++G V  + T+N+LI   C+ G +E  +E+   +   
Sbjct: 359 VMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESN 418

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
               +  TY  LI   SK   + +A  LL  ++E    P    Y  +I    + G FD A
Sbjct: 419 NCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSA 478

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +     +K  G  P++  Y++ I    +  R  EA +    + E G+      +  + DG
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538

Query: 307 LKNCGKHDLAEKIELLE 323
               GK D  E I LLE
Sbjct: 539 HCKAGKID--EAISLLE 553



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 114/233 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++L+K   L     T S+ I+   K   ++ A ++FN       +   ++Y +L+  
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A +L+ RM  +  +P+  TY  L+   C  GK++E    ++ MS  G  P 
Sbjct: 539 HCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPT 598

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L++ +L  G  + A ++ N+M+  G   D+ T+ + I T C SG V+    M  
Sbjct: 599 VATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMA 658

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
            + + G+  D  TY +LI A  + G+  +AF +L  +++ G  P   ++  +I
Sbjct: 659 RMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 123/304 (40%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++  + K G +  A    +K            Y SL+   C     + AY +   M
Sbjct: 216 TLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMM 275

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   ++ +Y  +++  C +G++ E     ++M +    P VR   +++  L      
Sbjct: 276 PNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRN 335

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + N+M ++    ++ T+  +++ +CK  +++    +   + + GL   V TY  L
Sbjct: 336 LEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNAL 395

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G I+ A  +L  +  +  +P    Y  +I G  +R     A    S+M     
Sbjct: 396 IRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKL 455

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI +  + G F  A   L  + E GL P    + +  D L  C    + E 
Sbjct: 456 TPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTL--CKSKRMEEA 513

Query: 319 IELL 322
            +L 
Sbjct: 514 CDLF 517



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 93/215 (43%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           E +    EM +    P +   + +V      G +  A   V+K+ + G   D  T+ SLI
Sbjct: 197 EMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLI 256

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              C++ +V    +++  +   G   +  +Y  +I  + +AG IDE   L   + ED   
Sbjct: 257 LGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCY 316

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  II  +F   +  +    F+EM+ +   PN   YT+++    +  +  E+   
Sbjct: 317 PTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRI 376

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           L EM E GL P    ++ +  G    G+ + A +I
Sbjct: 377 LNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 35/276 (12%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN LL  L    +      +   M+    VP+  T   +VNA+   G + EA  ++ ++ 
Sbjct: 182 YNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIF 241

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +P       L+ G      + SA ++ N M  +G   +  ++ ++I  +C++G ++
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRID 301

Query: 175 FCVEMY--------------YSVCKLGLCA---------------------DVSTYKILI 199
             + ++              Y+V    L                       +V TY +++
Sbjct: 302 EGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMV 361

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K   +DE+ R+L+ ++E G  P    Y  +I+G    G+ + A      M+     
Sbjct: 362 DAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCR 421

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           PN   Y  LI    +     +A   L +M E  LTP
Sbjct: 422 PNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTP 457



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 69/170 (40%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+  +QM        F L + ++N L+  + +   ++    +Y  +    +  ++ T   
Sbjct: 160 LDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNT 219

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++ A SK G I EA   +  + + G  P    Y  +I G  R    + A+  F+ M  KG
Sbjct: 220 MVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKG 279

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              N   YT +I      GR  E  +   +M E    P  R + ++   L
Sbjct: 280 CRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHAL 329


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 145/299 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I    K G    A+++  K      +  V +Y++++ ALC+ +L   AY L   M  
Sbjct: 416 ATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTV 475

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG   D  TY+ L+  +C  GK++EA   L EM  K  NP VR   +LV  L   G ++ 
Sbjct: 476 KGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKE 535

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK ++  M+K     D+ T+N+L+       EV+    ++ ++  +G+  DV TY ILI 
Sbjct: 536 AKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILIN 595

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K+ M+DEA  L   + +    P    Y+ ++ G+ + G+    +    EM+ +G P 
Sbjct: 596 GFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPA 655

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   Y  LI    + G   +A     +M + G+ P +  F ++ DGL   G+   A+++
Sbjct: 656 DVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEV 714



 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 152/334 (45%), Gaps = 35/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K+ LV  A  +F++ T       V+ Y++L++  C V     A  L+  M+ 
Sbjct: 451 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVL 510

Query: 81  KGFVPDKRTYAILVNAWCSSGKMRE----------------------------------- 105
           K   PD RTY ILV+A    GK++E                                   
Sbjct: 511 KTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKK 570

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           AQ     MS  G  P V    +L+ G   +  ++ A  +  +M ++  V D  T++SL++
Sbjct: 571 AQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVD 630

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CKSG + +  ++   +   G  ADV TY  LI  + K G +D+A  L + + + G +P
Sbjct: 631 GLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRP 690

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               +  ++ G+ + G+  DA   F ++  KG+  +  +Y ++I    + G   EA   L
Sbjct: 691 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTML 750

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +M E G  P +  FD++ + L    ++D AEK+
Sbjct: 751 SKMEENGCIPNAVTFDIIINALFKKDENDKAEKL 784



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A  VFN  +       V  Y  L+   C+ K+   A  L + M +K  VPD  TY+ 
Sbjct: 568 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSS 627

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           LV+  C SG++    + + EM D+G    V   + L+ GL   G+L+ A  + NKM  QG
Sbjct: 628 LVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG 687

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  TF  L++ +CK G ++   E++  +   G   DV  Y ++I    K G+++EA 
Sbjct: 688 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEAL 747

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +L  + E+G  P    +  II  +F++ + D A     +M  +G
Sbjct: 748 TMLSKMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARG 792



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 132/282 (46%), Gaps = 2/282 (0%)

Query: 14  SVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +++P  +T +++++  GK G V  A  V         +  V  YN+L+     V     A
Sbjct: 512 TINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKA 571

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M   G  PD  TY IL+N +C S  + EA    +EM  K   P       LV G
Sbjct: 572 QHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDG 631

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +     ++++M  +G   D+ T+NSLI+ +CK+G ++  + ++  +   G+  +
Sbjct: 632 LCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPN 691

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+ IL+  + K G + +A  +  +L+  G+     +Y  +I G  ++G  ++A    S
Sbjct: 692 TFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLS 751

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  PN   + ++I    +     +A   L +M   GL
Sbjct: 752 KMEENGCIPNAVTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 143/296 (48%), Gaps = 3/296 (1%)

Query: 13  LSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V+P   + +++I  F K   VD A+ +F K    +    ++ +N +L +  ++K +  
Sbjct: 267 MGVTPDVHSYNIMINGFCKIKRVDKALNLF-KEMILSRFPPIIQFNKILDSFAKMKHYST 325

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L  R+  KG  PD  T  IL+N +C  G++      L ++  +G+ P     + L++
Sbjct: 326 AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIK 385

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G ++ A    +K++ QGF L+  ++ +LI  +CK G+    +++   +       
Sbjct: 386 GLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKP 445

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V  Y  +I A+ K  ++ EA+ L   +   G       Y+ +I G    G+  +A    
Sbjct: 446 NVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLL 505

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +EM +K   P+   YT+L+   G+ G+  EA + L  M +  + P    ++ + +G
Sbjct: 506 NEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNG 561



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A++   K      +  V +YN+++ ALC+ +L   AY L   M  KG   +  TY+ L+ 
Sbjct: 117 AIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIY 176

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C  GK++EA   L  M  K  NP V   ++LV  L   G ++ AK ++  M+K     
Sbjct: 177 GFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS 236

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           ++ T+++L++      EV+    ++ ++  +G+  DV +Y I+I    K   +D+A  L 
Sbjct: 237 NVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLF 296

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++     P    +  I+    +   +  A      +++KG  P+     +LI      
Sbjct: 297 KEMILSRFPPIIQ-FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHM 355

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-------HD--LAEKIELLEVS 325
           G+     + L ++ + G  P +   + +  GL   G+       HD  LA+  +L +VS
Sbjct: 356 GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVS 414



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 124/295 (42%), Gaps = 1/295 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S +  T S +I  F   G +  A+ + N          V  YN L+ ALC+      A 
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +++  M++     +  TY+ L++ +    ++++AQ     MS  G  P V   ++++ G 
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A  +  +MI   F   ++ FN ++++  K       V + + +   G+  D+
Sbjct: 284 CKIKRVDKALNLFKEMILSRFPPIIQ-FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDL 342

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T  ILI      G I   F +L  +++ G+ P       +IKG+  +GQ   A  F  +
Sbjct: 343 FTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDK 402

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +  +G   N+  Y  LI    + G    A   L ++      P    +  + D L
Sbjct: 403 LLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDAL 457



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G V  A+   +K  A   Q   + Y +L+  +C +     A   +R++
Sbjct: 65  TLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFLRKI 124

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+   Y  +++A C    + EA     EM+ KG +  V     L+ G    G L
Sbjct: 125 DGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKL 184

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++N M+ +    ++ T+N L++ +CK G+V+    +   + K  + ++V TY  L
Sbjct: 185 KEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTL 244

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        + +A  + + +   G  P    Y  +I G  +  + D A   F EM +   
Sbjct: 245 MDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRF 304

Query: 259 PP 260
           PP
Sbjct: 305 PP 306



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           + +++ +++++G+ PD  T   L+   C  G+++EA  F  ++  +GF         L+ 
Sbjct: 47  SLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLIN 106

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+   G   +A + + K+  +    ++E +N++I+ +CK   V     ++  +   G+ A
Sbjct: 107 GVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISA 166

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V TY  LI      G + EA  LL+ +V     P    Y  ++  + + G+  +A    
Sbjct: 167 NVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVL 226

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFV-----EAANYLVEMTEMGLTPISRCFDLVTD 305
           + M       N   Y+ L+      G F+     +A +    M+ MG+TP    ++++ +
Sbjct: 227 AVMLKACVKSNVITYSTLM-----DGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMIN 281

Query: 306 G 306
           G
Sbjct: 282 G 282



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 2/186 (1%)

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ K++K+G+  D  T N+LI+ +C  G+V+  +  +  +   G   +  +Y  LI  V
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G    A + L  +     KP   +Y  II  + +     +A+  FSEM +KG   N 
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y+ LI      G+  EA   L  M    + P    ++++ D L  C +  + E   +L
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDAL--CKEGKVKEAKSVL 226

Query: 323 EVSLRS 328
            V L++
Sbjct: 227 AVMLKA 232



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 35/172 (20%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+         T + +I+   K+G +D A+ +FNK                  
Sbjct: 641 VWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNK------------------ 682

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M  +G  P+  T+ IL++  C  G++++AQE  Q++  KG++ 
Sbjct: 683 -----------------MKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL 725

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            V   ++++ G    G LE A  M++KM + G + +  TF+ +I  + K  E
Sbjct: 726 DVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDE 777


>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
           salt-inducible-like protein from Arabidopsis thaliana
           BAC gb|AL021637 [Arabidopsis thaliana]
 gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 780

 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 158/357 (44%), Gaps = 38/357 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+T+E +K   +SV      ++I  + K G+ + AVE F +   F+C+  V  YN +L  
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRV 171

Query: 62  LCEVKLFHG-AYALIRRMIR-----------------------------------KGFVP 85
           +   ++F   A+A+   M++                                   +G  P
Sbjct: 172 MMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           ++ TY IL++  C  G   +A++   EM   G  P     + L+ G    G +  A +++
Sbjct: 232 NRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELL 291

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
               K GFVL L  ++SLI+ + ++       E+Y ++ K  +  D+  Y ILI  +SKA
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKA 351

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G I++A +LL ++   G  P    Y  +IK +  RG  ++      EM      P+   +
Sbjct: 352 GKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTH 411

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           T+LI    R G   EA     E+ + G +P    F+ + DGL  C   +L E   LL
Sbjct: 412 TILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGL--CKSGELKEARLLL 466



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 146/326 (44%), Gaps = 14/326 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    +S +  T +++I    + G  D+A ++F +          + +N+LL   
Sbjct: 219 KMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGF 278

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     A+ L+R   + GFV   R Y+ L++    + +  +A E    M  K   P +
Sbjct: 279 CKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIKPDI 338

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+QGL  AG +E A ++++ M  +G   D   +N++I+ +C  G +E    +   
Sbjct: 339 ILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLE 398

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +     D  T+ ILI ++ + G++ EA  +   + + G  P  + +  +I G+ + G+
Sbjct: 399 MSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGE 458

Query: 243 FDDAFCFFSEMKIK---------GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +A     +M++           H  NR   TM+       G  ++A   L    + G 
Sbjct: 459 LKEARLLLHKMEVGRPASLFLRLSHSGNRSFDTMV-----ESGSILKAYRDLAHFADTGS 513

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
           +P    ++++ +G    G  D A K+
Sbjct: 514 SPDIVSYNVLINGFCRAGDIDGALKL 539



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 122/277 (44%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N S +  T  ++++   K G   +A ++F+  T        + Y  L+  LC+      A
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDA 252

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   M   G  PD   +  L++ +C  G+M EA E L+     GF   +RG   L+ G
Sbjct: 253 RKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDG 312

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A     A ++   M+K+    D+  +  LI+ + K+G++E  +++  S+   G+  D
Sbjct: 313 LFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPD 372

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  +I A+   G+++E   L   + E    P    +  +I  M R G   +A   F+
Sbjct: 373 TYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFT 432

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           E++  G  P+   +  LI    + G   EA   L +M
Sbjct: 433 EIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 140/320 (43%), Gaps = 25/320 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    ++GLV  A E+F +     C   V  +N+L+  LC+      A  L+ +M
Sbjct: 410 THTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469

Query: 79  ---------IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
                    +R     + R++  +V     SG + +A   L   +D G +P +   ++L+
Sbjct: 470 EVGRPASLFLRLSHSGN-RSFDTMVE----SGSILKAYRDLAHFADTGSSPDIVSYNVLI 524

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G   AG ++ A +++N +  +G   D  T+N+LI  + + G  E   +++Y+  K    
Sbjct: 525 NGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYA--KDDFR 582

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
              + Y+ L+    +   +  AF L    ++          A  I+  F+ G+ + A   
Sbjct: 583 HSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKK-ISCLDDETANEIEQCFKEGETERALRR 641

Query: 250 FSEMKIKGHPPNRPVYTM-LITMCGRGGRFVEAANYLVEMTEMGL--TPISRCFDLVTDG 306
             E+  +        YT+ LI +C + GRF EA      + E  +  TP S C  L+  G
Sbjct: 642 LIELDTRKDELTLGPYTIWLIGLC-QSGRFHEALMVFSVLREKKILVTPPS-CVKLI-HG 698

Query: 307 LKNCGKHDLAEKIELLEVSL 326
           L  C +  L   IE+   +L
Sbjct: 699 L--CKREQLDAAIEVFLYTL 716



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 40/175 (22%)

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP--------------------- 225
           G+  D   + +LI A +K GM ++A      + E   +P                     
Sbjct: 122 GVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKEFDCRPDVFTYNVILRVMMREEVFFML 181

Query: 226 -------------FPSLY--APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
                         P+LY    ++ G++++G+  DA   F +M  +G  PNR  YT+LI+
Sbjct: 182 AFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILIS 241

Query: 271 -MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            +C RG    +A     EM   G  P S   + + DG    G+  + E  ELL +
Sbjct: 242 GLCQRGSA-DDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGR--MVEAFELLRL 293


>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
          Length = 447

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 135/269 (50%), Gaps = 1/269 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I  M+   +  SP+T +++ E +   G  D AV++F       C Q +  +N++L 
Sbjct: 104 VWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILD 163

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    AY L R  +R  F  D  TY +++N WC   +  +  E L+EM ++G NP
Sbjct: 164 VLCKSKRVEKAYELFR-ALRGRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINP 222

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +++G   AG +  A +   +M K+   +D+ T+ +++     +GE++    ++
Sbjct: 223 NLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVF 282

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+   V+TY  +I  + K   ++ A  +   +V  G++P  + Y  +I+G+F  
Sbjct: 283 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 342

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           G+F         M+ +G  PN   Y M+I
Sbjct: 343 GEFSRGEELMQRMENEGCEPNFQTYNMMI 371


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 136/277 (49%), Gaps = 2/277 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ +N+L+  LC   LF   + ++ +M+  G  PD R YA +++  C  G +  A 
Sbjct: 256 CPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAH 315

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E L  M   G  P V   + +++GL +A   E A++++ +M      LD  TFN L++  
Sbjct: 316 EILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFF 375

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C++G V   +E+   + + G   DV TY  +I    K G+IDEA  LL ++   G +P  
Sbjct: 376 CQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNT 435

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++KG+    ++ DA    S+M  +G  PN   +  +I    + G   +A   L +
Sbjct: 436 ISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQ 495

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           M   G +P    +  V DGL   GK D  E +ELL V
Sbjct: 496 MLLNGCSPDLISYSTVIDGLGKAGKTD--EALELLNV 530



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 2/258 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+   C+  L +    L+ +M+  G VPD  TY  ++N +C  G + EA   L+ M+
Sbjct: 368 FNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMA 427

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      ++++GL +A     A+ ++++MI+QG   +  TFN++I  +CK G VE
Sbjct: 428 ACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVE 487

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E+   +   G   D+ +Y  +I  + KAG  DEA  LL+ +V  G  P   +Y+ I 
Sbjct: 488 QAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIA 547

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGL 293
             + + G+ +     F  ++      +  +Y  +I ++C RGG    A  +L  M   G 
Sbjct: 548 SALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTD-RAIEFLAYMVSSGC 606

Query: 294 TPISRCFDLVTDGLKNCG 311
            P    + ++  GL + G
Sbjct: 607 MPNESTYTILIRGLASEG 624



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 135/274 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F ++GLV   +E+  +     C   V+ Y +++   C+  L   A  L++ M
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+ +  +A++ + +M ++G +P     + ++  L   G +
Sbjct: 427 AACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLV 486

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G+ +  +E+   +   G+  +   Y  +
Sbjct: 487 EQAIELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSI 546

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+SK G I+   ++  N+ +   +    LY  +I  + +RG  D A  F + M   G 
Sbjct: 547 ASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGC 606

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            PN   YT+LI      G   EA   L E+   G
Sbjct: 607 MPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 143/312 (45%), Gaps = 2/312 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    ++GL +   +V  +     C   + +Y ++L  +C+      A+ ++ RM
Sbjct: 262 TFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+   Y  ++   CS+ +  +A+E L EM D          ++LV      G +
Sbjct: 322 PSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLV 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               +++ +M++ G V D+ T+ ++I   CK G ++  V +  S+   G   +  +Y I+
Sbjct: 382 YRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIV 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +  A    +A  L+  ++E G  P P  +  +I  + ++G  + A     +M + G 
Sbjct: 442 LKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGC 501

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ +I   G+ G+  EA   L  M   G++P +  +  +   L   G+ +   +
Sbjct: 502 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQ 561

Query: 319 I--ELLEVSLRS 328
           +   + +V++RS
Sbjct: 562 MFDNIQDVTIRS 573



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 122/274 (44%), Gaps = 7/274 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS---SGKMREAQEFLQ 111
           Y  ++ ALC       A +++  M R+G  P    Y +++ A CS    G  R A   LQ
Sbjct: 118 YFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQ 177

Query: 112 EMSDKGFNPPVRGRDLLVQGLLN-AGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICK 169
           ++  +G    V   +L++  + +  G ++ A +++  +    G   D+ ++N++++ +C 
Sbjct: 178 DLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCM 237

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           +       ++   + ++G   +V T+  LI  + + G+ +   ++L  +V+ G  P   +
Sbjct: 238 AKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRM 297

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           YA ++ G+ + G  + A      M   G  PN   Y  ++       R+ +A   L EM 
Sbjct: 298 YATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMF 357

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +         F+++ D    C    +   IELLE
Sbjct: 358 DNDCPLDDVTFNILVDFF--CQNGLVYRVIELLE 389



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP T+  S I     K G ++  +++F+       +   +LYN+++ +LC+     
Sbjct: 533 NKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTD 592

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            A   +  M+  G +P++ TY IL+    S G ++EAQE L E+  KG
Sbjct: 593 RAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score = 38.9 bits (89), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCFFS 251
           Y  ++    +AG +  A RL  ++      P P     Y P+++ +  RG+  DA     
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASV------PVPPNAYTYFPVVRALCARGRIADALSVLD 139

Query: 252 EMKIKGHPPNRPVYTMLI-TMCGR 274
           EM+ +G  P  P+Y +++   C R
Sbjct: 140 EMRRRGCAPIPPMYHVILEAACSR 163


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 6/309 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + II      G V  A+ + +      CQ  V+ Y  LL A+C+   F 
Sbjct: 169 SMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 228

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++  M  KG  P+  TY +++N  C  G++ +A+EFL  +S  GF P       ++
Sbjct: 229 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 288

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL  A   E  +++  +M+++  + +  TF+ L+   C+ G VE  +++   +   G  
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 348

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A+ +   I+I  + K G +D+AF+ L+N+   G  P    Y  ++KG+ R  +++DA   
Sbjct: 349 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 408

Query: 250 FSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGL 307
             EM  K  PPN   + T +  +C +G   +E A  L+E M+E G       ++ + +G 
Sbjct: 409 LKEMVRKNCPPNEVTFNTFICILCQKG--LIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466

Query: 308 KNCGKHDLA 316
              G+ D A
Sbjct: 467 CVQGRVDSA 475



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 34/340 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  +  + +    +++I    K G VD+A +  N   ++ C    + Y ++L  L
Sbjct: 337 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 396

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C  + +  A  L++ M+RK   P++ T+   +   C  G + +A   +++MS+ G     
Sbjct: 397 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 456

Query: 118 --FNPPVRG-------------------------RDLLVQGLLNAGYLESAKQMVNKMIK 150
             +N  V G                            L+ GL NA  L++A +++ +M++
Sbjct: 457 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 516

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    ++ TFN L+   C+ G ++  +E+   + + G   ++ TY  L+  ++K    +E
Sbjct: 517 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEE 576

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLI 269
           A  LLH LV +G  P    Y+ II  + R  + ++A   F  ++  G  P   +Y  +L+
Sbjct: 577 ALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL 636

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            +C R      A ++   M   G  P    +  + +GL N
Sbjct: 637 ALCKRCNTD-GAIDFFAYMVSNGCMPNELTYITLIEGLAN 675



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A  +  + +   C+  ++ YN+L+   C       A  L   M  K   P+  
Sbjct: 433 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTI 489

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C++ ++  A E L EM  K   P V   ++LV      G ++ A ++V +M
Sbjct: 490 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 549

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L T+N+L++ I K    E  +E+ + +   G+  D+ TY  +I  +S+   +
Sbjct: 550 MEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 609

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++ H + + G +P   +Y  I+  + +R   D A  FF+ M   G  PN   Y  L
Sbjct: 610 EEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 669

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I          E  + L E+   G+
Sbjct: 670 IEGLANEDFLKETRDLLRELCSRGV 694



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 147/340 (43%), Gaps = 42/340 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G VD+A E  N+ +++  Q   + Y ++L  LC  K +     L   M
Sbjct: 248 TYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM 307

Query: 79  IRKGFVPDKRTYAILV-----------------------------------NAWCSSGKM 103
           + K  +P++ T+ +LV                                   N  C  G++
Sbjct: 308 MEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRV 367

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A +FL  M   G +P       +++GL  A   E AK+++ +M+++    +  TFN+ 
Sbjct: 368 DDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 427

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +E    +   + + G   ++ TY  L+      G +D A  L +++     
Sbjct: 428 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PC 484

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  ++ G+    + D A    +EM  K   PN   + +L++   + G   EA  
Sbjct: 485 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 544

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL-KNCGKHDLAEKIELL 322
            + +M E G TP    ++ + DG+ K+C      E +ELL
Sbjct: 545 LVEQMMEHGCTPNLITYNTLLDGITKDCNSE---EALELL 581



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 123/281 (43%), Gaps = 3/281 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  + ++ T+      V L   L+  LC       A  ++R   R G   D   Y  LV 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C  G++  A+  +  M      P       +++GL + G +  A  +++ M+ +G   
Sbjct: 153 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            + T+  L+E +CKS      +E+   +   G   ++ TY ++I  + + G +D+A   L
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + L   G +P    Y  ++KG+    +++D    F+EM  K   PN   + ML+    RG
Sbjct: 270 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 329

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G    A   L +M+  G    +   ++V + +   G+ D A
Sbjct: 330 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDA 370



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 38/314 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G   +A  V            V  YN+L+   C       A  LI  M    
Sbjct: 115 LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 171

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  ++   C  G++ EA   L +M  +G  P V    +L++ +  +     A 
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE--------------MYYSVCKLGL 188
           +++++M  +G   ++ T+N +I  +C+ G V+   E              + Y+    GL
Sbjct: 232 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 291

Query: 189 CA-----DVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CA     DV                 T+ +L+    + GM++ A ++L  +   G     
Sbjct: 292 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 351

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           +L   +I  + ++G+ DDAF F + M   G  P+   YT ++    R  R+ +A   L E
Sbjct: 352 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 411

Query: 288 MTEMGLTPISRCFD 301
           M      P    F+
Sbjct: 412 MVRKNCPPNEVTFN 425



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 3/178 (1%)

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++V++   +G   D+     LI  +C+ G       +  +  + G   DV  Y  L+ 
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              + G +D A RL+ ++      P    Y PII+G+  RG+  +A     +M  +G  P
Sbjct: 153 GYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           +   YT+L+    +   F +A   L EM   G TP    ++++ +G+   G+ D A +
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARE 267



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S II    +   V+ A+++F+       +   ++YN +L ALC+     GA 
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
                M+  G +P++ TY  L+    +   ++E ++ L+E+  +G
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 693


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 6/309 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + II      G V  A+ + +      CQ  V+ Y  LL A+C+   F 
Sbjct: 138 SMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 197

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++  M  KG  P+  TY +++N  C  G++ +A+EFL  +S  GF P       ++
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL  A   E  +++  +M+++  + +  TF+ L+   C+ G VE  +++   +   G  
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A+ +   I+I  + K G +D+AF+ L+N+   G  P    Y  ++KG+ R  +++DA   
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 377

Query: 250 FSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGL 307
             EM  K  PPN   + T +  +C +G   +E A  L+E M+E G       ++ + +G 
Sbjct: 378 LKEMVRKNCPPNEVTFNTFICILCQKG--LIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 308 KNCGKHDLA 316
              G+ D A
Sbjct: 436 CVQGRVDSA 444



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/340 (22%), Positives = 151/340 (44%), Gaps = 34/340 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  +  + +    +++I    K G VD+A +  N   ++ C    + Y ++L  L
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C  + +  A  L++ M+RK   P++ T+   +   C  G + +A   +++MS+ G     
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425

Query: 118 --FNPPVRG-------------------------RDLLVQGLLNAGYLESAKQMVNKMIK 150
             +N  V G                            L+ GL NA  L++A +++ +M++
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 485

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    ++ TFN L+   C+ G ++  +E+   + + G   ++ TY  L+  ++     +E
Sbjct: 486 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEE 545

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLI 269
           A  LLH LV +G  P    Y+ II  + R  + ++A   F  ++  G  P   +Y  +L+
Sbjct: 546 ALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL 605

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            +C R      A ++   M   G  P    +  + +GL N
Sbjct: 606 ALCKRCNTD-GAIDFFAYMVSNGCMPNELTYITLIEGLAN 644



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A  +  + +   C+  ++ YN+L+   C       A  L   M  K   P+  
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTI 458

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C++ ++  A E L EM  K   P V   ++LV      G ++ A ++V +M
Sbjct: 459 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L T+N+L++ I      E  +E+ + +   G+  D+ TY  +I  +S+   +
Sbjct: 519 MEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++ H + + G +P   +Y  I+  + +R   D A  FF+ M   G  PN   Y  L
Sbjct: 579 EEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 638

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I          E  + L E+   G+
Sbjct: 639 IEGLANEDFLKETRDLLRELCSRGV 663



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 42/340 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G VD+A E  N+ +++  Q   + Y ++L  LC  K +     L   M
Sbjct: 217 TYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM 276

Query: 79  IRKGFVPDKRTYAILV-----------------------------------NAWCSSGKM 103
           + K  +P++ T+ +LV                                   N  C  G++
Sbjct: 277 MEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRV 336

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A +FL  M   G +P       +++GL  A   E AK+++ +M+++    +  TFN+ 
Sbjct: 337 DDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +E    +   + + G   ++ TY  L+      G +D A  L +++     
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PC 453

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  ++ G+    + D A    +EM  K   PN   + +L++   + G   EA  
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKN-CGKHDLAEKIELL 322
            + +M E G TP    ++ + DG+ N C      E +ELL
Sbjct: 514 LVEQMMEHGCTPNLITYNTLLDGITNDCNSE---EALELL 550



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 117/265 (44%), Gaps = 3/265 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L   L+  LC       A  ++R   R G   D   Y  LV  +C  G++  A+  + 
Sbjct: 78  VYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIA 137

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P       +++GL + G +  A  +++ M+ +G    + T+  L+E +CKS 
Sbjct: 138 SMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKST 194

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                +E+   +   G   ++ TY ++I  + + G +D+A   L+ L   G +P    Y 
Sbjct: 195 GFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYT 254

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG+    +++D    F+EM  K   PN   + ML+    RGG    A   L +M+  
Sbjct: 255 TVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGH 314

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G    +   ++V + +   G+ D A
Sbjct: 315 GCAANTTLCNIVINTICKQGRVDDA 339



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 38/314 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G   +A  V            V  YN+L+   C       A  LI  M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 140

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  ++   C  G++ EA   L +M  +G  P V    +L++ +  +     A 
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE--------------MYYSVCKLGL 188
           +++++M  +G   ++ T+N +I  +C+ G V+   E              + Y+    GL
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 189 CA-----DVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CA     DV                 T+ +L+    + GM++ A ++L  +   G     
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           +L   +I  + ++G+ DDAF F + M   G  P+   YT ++    R  R+ +A   L E
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 288 MTEMGLTPISRCFD 301
           M      P    F+
Sbjct: 381 MVRKNCPPNEVTFN 394



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 3/205 (1%)

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           + EA   +   + +G  P V     L++ L   G    A +++    + G  +D+  +N+
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           L+   C+ G+++    +  S   + +  D  TY  +I  +   G + EA  LL +++  G
Sbjct: 119 LVAGYCRYGQLDAARRLIAS---MPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P    Y  +++ + +   F  A     EM+ KG  PN   Y ++I    R GR  +A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
            +L  ++  G  P +  +  V  GL
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGL 260



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 3/181 (1%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A ++V++   +G   D+     LI  +C+ G       +  +  + G   DV  Y  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    + G +D A RL+ ++      P    Y PII+G+  RG+  +A     +M  +G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT+L+    +   F +A   L EM   G TP    ++++ +G+   G+ D A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 318 K 318
           +
Sbjct: 236 E 236



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S II    +   V+ A+++F+       +   ++YN +L ALC+     GA 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
                M+  G +P++ TY  L+    +   ++E ++ L+E+  +G
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 153/309 (49%), Gaps = 6/309 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + II      G V  A+ + +      CQ  V+ Y  LL A+C+   F 
Sbjct: 138 SMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFG 197

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++  M  KG  P+  TY +++N  C  G++ +A+EFL  +S  GF P       ++
Sbjct: 198 QAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 257

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL  A   E  +++  +M+++  + +  TF+ L+   C+ G VE  +++   +   G  
Sbjct: 258 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 317

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           A+ +   I+I  + K G +D+AF+ L+N+   G  P    Y  ++KG+ R  +++DA   
Sbjct: 318 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 377

Query: 250 FSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGL 307
             EM  K  PPN   + T +  +C +G   +E A  L+E M+E G       ++ + +G 
Sbjct: 378 LKEMVRKNCPPNEVTFNTFICILCQKG--LIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435

Query: 308 KNCGKHDLA 316
              G+ D A
Sbjct: 436 CVQGRVDSA 444



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 152/340 (44%), Gaps = 34/340 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  +  + +    +++I    K G VD+A +  N   ++ C    + Y ++L  L
Sbjct: 306 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 365

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C  + +  A  L++ M+RK   P++ T+   +   C  G + +A   +++MS+ G     
Sbjct: 366 CRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNI 425

Query: 118 --FNPPVRG-------------------------RDLLVQGLLNAGYLESAKQMVNKMIK 150
             +N  V G                            L+ GL NA  L++A +++ +M++
Sbjct: 426 VTYNALVNGFCVQGRVDSALELFYSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQ 485

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    ++ TFN L+   C+ G ++  +E+   + + G   ++ TY  L+  ++K    +E
Sbjct: 486 KDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEE 545

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLI 269
           A  LLH LV +G  P    Y+ II  + R  + ++A   F  ++  G  P   +Y  +L+
Sbjct: 546 ALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILL 605

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            +C R      A ++   M   G  P    +  + +GL N
Sbjct: 606 ALCKRCNTD-GAIDFFAYMVSNGCMPNELTYITLIEGLAN 644



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A  +  + +   C+  ++ YN+L+   C       A  L   M  K   P+  
Sbjct: 402 QKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTI 458

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C++ ++  A E L EM  K   P V   ++LV      G ++ A ++V +M
Sbjct: 459 TYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQM 518

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L T+N+L++ I K    E  +E+ + +   G+  D+ TY  +I  +S+   +
Sbjct: 519 MEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++ H + + G +P   +Y  I+  + +R   D A  FF+ M   G  PN   Y  L
Sbjct: 579 EEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITL 638

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I          E  + L E+   G+
Sbjct: 639 IEGLANEDFLKETRDLLRELCSRGV 663



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 147/340 (43%), Gaps = 42/340 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G VD+A E  N+ +++  Q   + Y ++L  LC  K +     L   M
Sbjct: 217 TYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM 276

Query: 79  IRKGFVPDKRTYAILV-----------------------------------NAWCSSGKM 103
           + K  +P++ T+ +LV                                   N  C  G++
Sbjct: 277 MEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRV 336

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A +FL  M   G +P       +++GL  A   E AK+++ +M+++    +  TFN+ 
Sbjct: 337 DDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTF 396

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +E    +   + + G   ++ TY  L+      G +D A  L +++     
Sbjct: 397 ICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM---PC 453

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  ++ G+    + D A    +EM  K   PN   + +L++   + G   EA  
Sbjct: 454 KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIE 513

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL-KNCGKHDLAEKIELL 322
            + +M E G TP    ++ + DG+ K+C      E +ELL
Sbjct: 514 LVEQMMEHGCTPNLITYNTLLDGITKDCNSE---EALELL 550



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 123/281 (43%), Gaps = 3/281 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  + ++ T+      V L   L+  LC       A  ++R   R G   D   Y  LV 
Sbjct: 62  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVA 121

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C  G++  A+  +  M      P       +++GL + G +  A  +++ M+ +G   
Sbjct: 122 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 178

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            + T+  L+E +CKS      +E+   +   G   ++ TY ++I  + + G +D+A   L
Sbjct: 179 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 238

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + L   G +P    Y  ++KG+    +++D    F+EM  K   PN   + ML+    RG
Sbjct: 239 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRG 298

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G    A   L +M+  G    +   ++V + +   G+ D A
Sbjct: 299 GMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDA 339



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 125/314 (39%), Gaps = 38/314 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G   +A  V            V  YN+L+   C       A  LI  M    
Sbjct: 84  LIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---P 140

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  ++   C  G++ EA   L +M  +G  P V    +L++ +  +     A 
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE--------------MYYSVCKLGL 188
           +++++M  +G   ++ T+N +I  +C+ G V+   E              + Y+    GL
Sbjct: 201 EVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGL 260

Query: 189 CA-----DVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CA     DV                 T+ +L+    + GM++ A ++L  +   G     
Sbjct: 261 CAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANT 320

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           +L   +I  + ++G+ DDAF F + M   G  P+   YT ++    R  R+ +A   L E
Sbjct: 321 TLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKE 380

Query: 288 MTEMGLTPISRCFD 301
           M      P    F+
Sbjct: 381 MVRKNCPPNEVTFN 394



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 3/205 (1%)

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           + EA   +   + +G  P V     L++ L   G    A +++    + G  +D+  +N+
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           L+   C+ G+++    +  S   + +  D  TY  +I  +   G + EA  LL +++  G
Sbjct: 119 LVAGYCRYGQLDAARRLIAS---MPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P    Y  +++ + +   F  A     EM+ KG  PN   Y ++I    R GR  +A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
            +L  ++  G  P +  +  V  GL
Sbjct: 236 EFLNRLSSYGFQPDTVSYTTVLKGL 260



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 3/181 (1%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A ++V++   +G   D+     LI  +C+ G       +  +  + G   DV  Y  
Sbjct: 59  LAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 118

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    + G +D A RL+ ++      P    Y PII+G+  RG+  +A     +M  +G
Sbjct: 119 LVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG 175

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT+L+    +   F +A   L EM   G TP    ++++ +G+   G+ D A 
Sbjct: 176 CQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAR 235

Query: 318 K 318
           +
Sbjct: 236 E 236



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S II    +   V+ A+++F+       +   ++YN +L ALC+     GA 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
                M+  G +P++ TY  L+    +   ++E ++ L+E+  +G
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 135/280 (48%), Gaps = 1/280 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    + G VD A E+FN+   F C   V+ YN+L+   C V      + L++ +
Sbjct: 239 SFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKEL 298

Query: 79  IRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + K    PD  TY  +++ +C  GKM +A      M   G  P     ++L+ G    G 
Sbjct: 299 LSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGD 358

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + SA+ M  +M+  G   D+ TF SLI+  C++G+VE  +++++ +    L  +  T+ I
Sbjct: 359 MVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAI 418

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L  A+ K   + EA   L +L        P +Y P+I G  + G  D+A    +EM+ K 
Sbjct: 419 LTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKR 478

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             P++  YT+LI      GR  EA +    M   G  P S
Sbjct: 479 CKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDS 518



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 127/294 (43%), Gaps = 33/294 (11%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ------E 108
           Y+ LL +L E+     A A+   M   G  PD      LV++   +GK   A+      E
Sbjct: 140 YSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFNIARTWVDGVE 199

Query: 109 FLQEMSDKGFNPPVRGR------------------------DLLVQGLLNAGYLESAKQM 144
           F   + +K  N  VRG                         ++L++GL   G ++ A ++
Sbjct: 200 FSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFEL 259

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKILIPAVS 203
            N+M   G   D+ T+N+LI   C+  EV+   ++    + K  L  DV TY  +I    
Sbjct: 260 FNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYC 319

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +++A  L +N++  G KP    +  +I G  + G    A   + EM + G PP+  
Sbjct: 320 KLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDII 379

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            +T LI    R G+   +     E+    L+P    F ++T+ L  C ++ L E
Sbjct: 380 TFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNAL--CKENRLHE 431



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 95/203 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  FGK G + +A  ++ +     C   ++ + SL+   C       +  L   +
Sbjct: 345 TFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHEL 404

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P++ T+AIL NA C   ++ EA+ FL+++  +         + ++ G   AG +
Sbjct: 405 NARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNV 464

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M ++    D  T+  LI   C  G +   + ++  +   G   D  T   L
Sbjct: 465 DEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSL 524

Query: 199 IPAVSKAGMIDEAFRLLHNLVED 221
           I  + KAGM +EA+R++    ED
Sbjct: 525 ISCLLKAGMPNEAYRIMQIASED 547



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 8/246 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL+   +LS    T + II  + K G ++ A  +FN   +   +     +N L+    +V
Sbjct: 297 ELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKV 356

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   M+  G  PD  T+  L++  C +GK+  + +   E++ +  +P     
Sbjct: 357 GDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTF 416

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYY 181
            +L   L     L  A+  +  +  +  V     +N +I+  CK+G V+       EM  
Sbjct: 417 AILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEE 476

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             CK     D  TY ILI      G + EA  + + ++  G  P       +I  + + G
Sbjct: 477 KRCK----PDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAG 532

Query: 242 QFDDAF 247
             ++A+
Sbjct: 533 MPNEAY 538



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S   L LC    TY  L+ ++S+ G  + A  +   +  DGH P  S+   ++      G
Sbjct: 127 SRVNLNLCHSFRTYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAG 186

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT-PISRC- 299
           +F+ A  +     + G   +  VY  L+    RG +  EA  +  E  +MGL  P   C 
Sbjct: 187 KFNIARTW-----VDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFRE--QMGLHGPFDSCS 239

Query: 300 FDLVTDGLKNCGKHDLA 316
           F+++  GL   GK D A
Sbjct: 240 FNILIRGLCRIGKVDKA 256



 Score = 42.7 bits (99), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
            +YN ++   C+      A  ++  M  K   PDK TY IL+   C  G++ EA      
Sbjct: 449 FMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNR 508

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           M   G  P       L+  LL AG    A +++ ++  + F L L++ 
Sbjct: 509 MLGTGCAPDSITMTSLISCLLKAGMPNEAYRIM-QIASEDFNLGLKSL 555


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 149/310 (48%), Gaps = 2/310 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+ +     S+II+   KHG +DNA  +FN+         ++ YN L+   C    
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L+R MI++   P+  T+++L++++   GK+REA+E  +EM  +G  P       
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G     +L+ A QMV+ M+ +G   ++ TFN LI   CK+  ++  +E++  +   G
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRG 433

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + AD  TY  LI    + G ++ A  L   +V     P    Y  ++ G+   G+ + A 
Sbjct: 434 VVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKAL 493

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++      +  +Y ++I       +  +A +    +   G+ P  + ++++  GL
Sbjct: 494 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGL 553

Query: 308 KNCGKHDLAE 317
             C K  L+E
Sbjct: 554 --CKKGPLSE 561



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +  A E+  +          + Y SL+   C+      A  ++  M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P+ RT+ IL+N +C + ++ +  E  ++MS +G        + L+QG    G L
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M+ +    ++ T+  L++ +C +GE E  +E++  + K  +  D+  Y I+
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  +D+A+ L  +L   G KP    Y  +I G+ ++G   +A   F +M+  GH
Sbjct: 515 IHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGH 574

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDG 306
            P+   Y +LI      G   ++   + E+   G     + I    D+++DG
Sbjct: 575 APDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDG 626



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ ++      G    A+ + +K   + CQ   + Y  +L  +C+      A  L+R+M
Sbjct: 195 TINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    D   Y+I+++  C  G +  A     EM  KG    +   ++L+ G  NAG  
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRW 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++  MIK+    ++ TF+ LI++  K G++    E++  +   G+  D  TY  L
Sbjct: 315 DDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSL 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D+A +++  +V  G  P    +  +I G  +  + DD    F +M ++G 
Sbjct: 375 IDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGV 434

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-- 316
             +   Y  LI      G+   A     EM    + P    + ++ DGL + G+ + A  
Sbjct: 435 VADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALE 494

Query: 317 --EKIE 320
             EKIE
Sbjct: 495 IFEKIE 500



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 140/295 (47%), Gaps = 4/295 (1%)

Query: 29  KHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           + GLVD    +A+++F           V+ ++ L  A+ + K +    AL ++M  KG  
Sbjct: 61  RSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIA 120

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            +  T +I++N +C   K+  A   + ++   G+ P       L+ GL   G +  A ++
Sbjct: 121 HNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALEL 180

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V++M++ G   DL T N+L+  +C SG+    + +   + + G   +  TY  ++  + K
Sbjct: 181 VDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCK 240

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G    A  LL  + E   K     Y+ II G+ + G  D+AF  F+EM++KG   N   
Sbjct: 241 SGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIIT 300

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           Y +LI      GR+ + A  L +M +  + P    F ++ D     GK   AE++
Sbjct: 301 YNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEEL 355



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 135/312 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M  Y    +  T   ++    K G    A+E+  K    N +   + Y+ ++  LC+
Sbjct: 216 IDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCK 275

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L   M  KG   +  TY IL+  +C++G+  +  + L++M  +  NP V  
Sbjct: 276 HGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 335

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+   +  G L  A+++  +MI +G   D  T+ SLI+  CK   ++   +M   + 
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++ T+ ILI    KA  ID+   L   +   G       Y  +I+G    G+ +
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +  PPN   Y +L+      G   +A     ++ +  +      ++++ 
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIII 515

Query: 305 DGLKNCGKHDLA 316
            G+ N  K D A
Sbjct: 516 HGMCNASKVDDA 527



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 123/263 (46%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A++ + ++I+ G+ P+  T++ L+N  C  G++ EA E +  M + G  P +
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV GL  +G    A  +++KM++ G   +  T+  ++  +CKSG+    +E+   
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRK 253

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  D   Y I+I  + K G +D AF L + +   G       Y  +I G    G+
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      +M  +   PN   +++LI    + G+  EA     EM   G+ P +  +  
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 303 VTDGLKNCGKHDLAEKIELLEVS 325
           + DG       D A ++  L VS
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVS 396



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 7/314 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS++I  F +   +  A     K      +   + +++L+  LC       A  L+ RM
Sbjct: 125 TLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRM 184

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  T   LVN  C SGK  EA   + +M + G  P       ++  +  +G  
Sbjct: 185 VEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQT 244

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++ KM ++   LD   ++ +I+ +CK G ++    ++  +   G+  ++ TY IL
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 304

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I     AG  D+  +LL ++++    P    ++ +I    + G+  +A     EM  +G 
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 364

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   YT LI   C      ++ AN +V+ M   G  P  R F+++ +G   C  + + 
Sbjct: 365 APDTITYTSLIDGFCKEN--HLDKANQMVDLMVSKGCDPNIRTFNILINGY--CKANRID 420

Query: 317 EKIELL-EVSLRSV 329
           + +EL  ++SLR V
Sbjct: 421 DGLELFRKMSLRGV 434



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 113/273 (41%), Gaps = 35/273 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++LM       + +T +++I  + K   +D+ +E+F K +        + YN+L+   
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGF 448

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           CE+   + A  L + M+ +   P+  TY IL++  C +G+  +A E  +++         
Sbjct: 449 CELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE-------- 500

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                                      K    LD+  +N +I  +C + +V+   +++ S
Sbjct: 501 ---------------------------KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS 533

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+   V TY I+I  + K G + EA  L   + EDGH P    Y  +I+     G 
Sbjct: 534 LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGD 593

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
              +     E+K  G   +     M+I M   G
Sbjct: 594 ATKSVKLIEELKRCGFSVDASTIKMVIDMLSDG 626


>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
          Length = 655

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   VSP    +++  F    +V  A+EV ++   + C+    ++  LL
Sbjct: 174 VWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLL 233

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  F P  + +  L+  WC  GK+ EA+  L ++ + GF 
Sbjct: 234 DALCKNGSVKEAASLFEDM-RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFE 292

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ +M ++    ++ +F +LI+ +C   ++E  + +
Sbjct: 293 PDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRV 352

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ +   G  AD  TY  LI    K G I + + LL N+++ GH P P  Y  I+    +
Sbjct: 353 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEK 412

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++      EM+  G  P+  +Y ++I +  + G   E      EM   GL+P    
Sbjct: 413 KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDT 472

Query: 300 FDLVTDGL 307
           F ++  G 
Sbjct: 473 FVIMIHGF 480



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 3/197 (1%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L++   +A  ++ A +++++M K G   D   F  L++ +CK+G V+    ++  + ++
Sbjct: 196 VLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM-RI 254

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                +  +  L+    + G + EA  +L  + E G +P   +Y  ++ G    G+  DA
Sbjct: 255 RFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDA 314

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +    EM+ K   PN   +T LI       +  EA     EM   G    +  +  +  G
Sbjct: 315 YDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISG 374

Query: 307 LKNCGKHDLAEKIELLE 323
               GK  +++  ELL+
Sbjct: 375 FCKWGK--ISKGYELLD 389



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 33/222 (14%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T   I+    K   ++  +E+  +     C   + +YN ++   C++        + 
Sbjct: 399 NPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVW 458

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M   G  P   T+ I+++ + S   + EA EF +EM          GR     GLL+A
Sbjct: 459 NEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMV---------GR-----GLLSA 504

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
               + K+++N ++                   ++ ++E   +++  +   G   +V  +
Sbjct: 505 PQYGTLKELLNSLL-------------------RAEKLEMSKDVWSCIMTKGCDLNVYAW 545

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            I I A+   G + EA     ++++ G  P P  +A +++G+
Sbjct: 546 TIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 587


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++I+   ++G VD   E +N+            Y SL+  LC V  F   + L+  MIR
Sbjct: 189 SIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIR 248

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G       + +L++  C +G + EA+E   EM ++G+ P +     L+ G    G ++ 
Sbjct: 249 RGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDM 308

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ + + + GF  D+ T+N  I   CK G V   V ++  +C+ G+  ++ TY  LI 
Sbjct: 309 ARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + KAG +  A+ ++  +   G  P       ++ G+ +  + D A   F+++   G  P
Sbjct: 369 CLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTP 428

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +   YT+LI  C    R  EA N L +M    L P    +  + DGL   G+
Sbjct: 429 DVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR 480



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 148/319 (46%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M    L VS    +++I+   K+G++  A E+F++      +  ++   +L+   C 
Sbjct: 243 VDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCL 302

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   +   GF  D  TY + ++ +C  G++R+A     EM  +G  P +  
Sbjct: 303 KGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVT 362

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+  L  AG +  A ++V  M + G   D+ T   L++ +CKS  ++  + ++  + 
Sbjct: 363 YNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLV 422

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  DV +Y ILI     +  + EA  LL ++      P    Y+ +I G+ R G+  
Sbjct: 423 ESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRIS 482

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A+   +EM +KG  P+   Y++L+    +     EA     +M + GL P   C+ ++ 
Sbjct: 483 NAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMI 542

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DG   C    + E I L  
Sbjct: 543 DGY--CKSERIDEAINLFR 559



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 124/258 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I  + K G V +AV VF++         ++ YNSL+  LC+     GA+ +++ M
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTM 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  PD  T  IL++  C S ++ +A     ++ + G  P V    +L+ G   +  +
Sbjct: 387 HRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRM 446

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M  +  V  + T++ LI+ +C+SG +     +   +   G   D  TY IL
Sbjct: 447 GEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSIL 506

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   +DEA  L + +++ G +P    Y  +I G  +  + D+A   F EM +K  
Sbjct: 507 LDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNL 566

Query: 259 PPNRPVYTMLITMCGRGG 276
            P+   YT+L     + G
Sbjct: 567 VPDIVTYTILFNAVFKSG 584



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 130/274 (47%), Gaps = 5/274 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G VD A E+F+    +  ++ V  YN  +   C+V     A  +   M R+G VP+  TY
Sbjct: 304 GNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTY 363

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++  C +G++  A E ++ M   G  P +    +L+ GL  +  L+ A  + N++++
Sbjct: 364 NSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVE 423

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D+ ++  LI   C S  +   + +   +    L   + TY  LI  + ++G I  
Sbjct: 424 SGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISN 483

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+RLL+ +   G  P    Y+ ++  ++++   D+A   F++M  +G  P+   YT++I 
Sbjct: 484 AWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMID 543

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              +  R  EA N   EM    L P     D+VT
Sbjct: 544 GYCKSERIDEAINLFREMHMKNLVP-----DIVT 572



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 1/224 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M    L+    T  ++++   K   +D A+ +FN+         V  Y  L+  
Sbjct: 380 WEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHG 439

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C  +    A  L+R M  K  VP   TY+ L++  C SG++  A   L EM  KG  P 
Sbjct: 440 CCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPD 499

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+  L    +L+ A  + N+MIK+G   D+  +  +I+  CKS  ++  + ++ 
Sbjct: 500 TITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFR 559

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +    L  D+ TY IL  AV K+G     ++ + N++ D + P
Sbjct: 560 EMHMKNLVPDIVTYTILFNAVFKSGSNSYEWKFV-NVIRDINPP 602



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 10/208 (4%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           ++++  +++++G+  D      ++   C +G + +A EF  E+ + GF+       +L+ 
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 131 GLLNAGYLESAKQMVNKMI-------KQGFVL--DLETFNSLIETICKSGEVEFCVEMYY 181
           GL   G +  A  ++ +MI       K GF +  ++  ++ +I+ +C++G V+   E Y 
Sbjct: 151 GLCENGRVNEAVNLL-RMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYN 209

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G+C +  TY  LI  +   G   E F L+  ++  G      ++  +I G+ + G
Sbjct: 210 EMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNG 269

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
              +A   F EM  +G+ PN    T L+
Sbjct: 270 MLVEAREMFDEMVNRGYEPNIVTCTALM 297


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 147/309 (47%), Gaps = 5/309 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K G    A  +            V+ YN L+  +C    +  A  L+  M+R+G
Sbjct: 125 LIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRG 184

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   T+ IL+N  C  G +  A + L++M   G  P     + L+ G      +E A 
Sbjct: 185 CSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAI 244

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           + + KM  +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +I  +
Sbjct: 245 EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 304

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SK G  D+A +LL  +   G KP    Y+ ++ G+ R G+ D+A  FF ++++ G  PN 
Sbjct: 305 SKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNA 364

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIEL 321
             Y  ++    +  +   A ++L  M + G  P    + ++ +GL   G   LA E +EL
Sbjct: 365 ITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEG---LAKEALEL 421

Query: 322 L-EVSLRSV 329
           L E+ LR V
Sbjct: 422 LNELCLRGV 430



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C++     A  ++  +   G VPD  TY +L++  CS+G+  +A++ L +M  +
Sbjct: 124 SLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRR 183

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P V   ++L+  L   G L  A  ++ KM K G   +  ++N L+   CK  ++E  
Sbjct: 184 GCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERA 243

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E    +   G   D+ TY  L+ A+ K G +D A  LL+ L   G  P    Y  +I G
Sbjct: 244 IEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDG 303

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           + + G+ D A     EM+ KG  P+   Y+ L+    R G+  EA  +  ++  +G+ P 
Sbjct: 304 LSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPN 363

Query: 297 SRCFDLVTDGLKNCGKHDLA 316
           +  ++ +  GL    K D A
Sbjct: 364 AITYNAIMLGLCKARKTDRA 383



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 124/244 (50%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T +++I    + GL+  A++V  K     C    L YN LL   C+ K    A  
Sbjct: 186 SPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIE 245

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            + +M  +G  PD  TY  L+ A C  GK+  A E L ++S KG +P +   + ++ GL 
Sbjct: 246 YLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 305

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A +++++M  +G   D+ T++SL+  + + G+V+  ++ ++ +  LG+  +  
Sbjct: 306 KVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAI 365

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  ++  + KA   D A   L  +V+ G KP  + Y  +I+G+   G   +A    +E+
Sbjct: 366 TYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNEL 425

Query: 254 KIKG 257
            ++G
Sbjct: 426 CLRG 429



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 103/220 (46%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ E   FL+ M  +G  P +     L++G    G    A +++  +   G V D+ T
Sbjct: 97  NGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVIT 156

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N LI  +C +G      ++   + + G    V T+ ILI  + + G++  A  +L  + 
Sbjct: 157 YNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMP 216

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G  P    Y P++ G  +  + + A  +  +M  +G  P+   Y  L+T   + G+  
Sbjct: 217 KHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVD 276

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            A   L +++  G +P+   ++ V DGL   GK D A K+
Sbjct: 277 AAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKL 316



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     ++  F K   ++ A+E   K T+  C   ++ YN+LL ALC+     
Sbjct: 222 PNSLSYNP-----LLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVD 276

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   TY  +++     GK  +A + L EM  KG  P +     LV
Sbjct: 277 AAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLV 336

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G ++ A +  + +   G   +  T+N+++  +CK+ + +  ++    + + G  
Sbjct: 337 GGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCK 396

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              ++Y ILI  ++  G+  EA  LL+ L
Sbjct: 397 PTEASYTILIEGLAYEGLAKEALELLNEL 425



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 261 TYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ LV      GK+ EA +F  ++   G  P     + ++ GL  A   
Sbjct: 321 RAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKT 380

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  M+++G      ++  LIE +   G  +  +E+   +C  G+    S  K+ 
Sbjct: 381 DRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVA 440

Query: 199 I 199
           +
Sbjct: 441 V 441



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 54/115 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+   L     T S ++    + G VD A++ F+       +   + YN+++  L
Sbjct: 315 KLLDEMRAKGLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGL 374

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           C+ +    A   +  M+++G  P + +Y IL+      G  +EA E L E+  +G
Sbjct: 375 CKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRG 429


>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Vitis vinifera]
          Length = 622

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 147/308 (47%), Gaps = 2/308 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   VSP    +++  F    +V  A+EV ++   + C+    ++  LL
Sbjct: 141 VWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLL 200

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  F P  + +  L+  WC  GK+ EA+  L ++ + GF 
Sbjct: 201 DALCKNGSVKEAASLFEDM-RIRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFE 259

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ +M ++    ++ +F +LI+ +C   ++E  + +
Sbjct: 260 PDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRV 319

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ +   G  AD  TY  LI    K G I + + LL N+++ GH P P  Y  I+    +
Sbjct: 320 FFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAHEK 379

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++      EM+  G  P+  +Y ++I +  + G   E      EM   GL+P    
Sbjct: 380 KEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVWNEMEATGLSPGLDT 439

Query: 300 FDLVTDGL 307
           F ++  G 
Sbjct: 440 FVIMIHGF 447



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 3/197 (1%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L++   +A  ++ A +++++M K G   D   F  L++ +CK+G V+    ++  + ++
Sbjct: 163 VLMRRFASARMVKKAIEVLDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDM-RI 221

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                +  +  L+    + G + EA  +L  + E G +P   +Y  ++ G    G+  DA
Sbjct: 222 RFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDA 281

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +    EM+ K   PN   +T LI       +  EA     EM   G    +  +  +  G
Sbjct: 282 YDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISG 341

Query: 307 LKNCGKHDLAEKIELLE 323
               GK  +++  ELL+
Sbjct: 342 FCKWGK--ISKGYELLD 356



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 33/222 (14%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P T   I+    K   ++  +E+  +     C   + +YN ++   C++        + 
Sbjct: 366 NPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVW 425

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M   G  P   T+ I+++ + S   + EA EF +EM  +              GLL+A
Sbjct: 426 NEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGR--------------GLLSA 471

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
               + K+++N ++                   ++ ++E   +++  +   G   +V  +
Sbjct: 472 PQYGTLKELLNSLL-------------------RAEKLEMSKDVWSCIMTKGCDLNVYAW 512

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            I I A+   G + EA     ++++ G  P P  +A +++G+
Sbjct: 513 TIWIHALFSNGHVKEACSYCLDMMDAGVMPQPDTFAKLMRGL 554


>gi|449449102|ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
 gi|449510601|ref|XP_004163711.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 8/295 (2%)

Query: 30  HGLV--------DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           HGL+        D A+ +F       C++  LLYN+L+ ALC+      +Y L+R M + 
Sbjct: 460 HGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLRDMEQS 519

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
              P   TY  +    C       A E L+EM   G  P ++   LLV+ L   G    A
Sbjct: 520 RLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNGRAIEA 579

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
              +  M+ +GF+ D+ ++++ ++ + K  +++  +E++  +C  G   DV ++ ILI  
Sbjct: 580 SNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRGCRPDVVSHNILIKG 639

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             KAG ++EA+  LH +   G  P    Y  +I    + G  D A    S+M  +   P 
Sbjct: 640 YCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPT 699

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              YT LI  C   GR  +A     EM E G +P    +  +  GL  CGK D A
Sbjct: 700 IISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEA 754



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 107/238 (44%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      A   +  M+ +GF+PD  +Y+  ++      K+  A E  Q++  +G
Sbjct: 566 LVKQLCKNGRAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQDICTRG 625

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   ++L++G   AG +  A   ++KM   G V    ++N LI   CK+G+++  +
Sbjct: 626 CRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGDIDKAI 685

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
                + +      + +Y  LI     +G  D+A  L + + E G  P    Y  I+ G+
Sbjct: 686 LCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMAIVHGL 745

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            + G+ D+A  ++  M+ K   P+  V   LI        F  A N L E  E G  P
Sbjct: 746 CKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKGNIP 803



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 102/209 (48%), Gaps = 2/209 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+E+F       C+  V+ +N L+   C+    + AY  + +M   G VP   +Y +
Sbjct: 611 LDRALELFQDICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNL 670

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N WC +G + +A   L +M+++   P +     L+ G  N+G  + AK + N+M ++G
Sbjct: 671 LINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKG 730

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  T+ +++  +CK G+ +  +  Y+S+ +  +  D      LI A         AF
Sbjct: 731 CSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAF 790

Query: 213 RLLHNLVEDGHKPFPS--LYAPIIKGMFR 239
            +L   +E G+ P P+   Y  I   +F+
Sbjct: 791 NILKETIEKGNIPDPTDKNYVTIKDAIFK 819



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 150/340 (44%), Gaps = 38/340 (11%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M+  NL ++ +T   +I  F K    D A+++  K         V +Y+ L+  LC+
Sbjct: 285 IDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLLEKMLKLGFTLDVSIYDVLIGGLCK 344

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL----QEMSDKG--- 117
            + F  A AL  +M   G  PD +  A LV    SS + R     L    ++++D+G   
Sbjct: 345 KRAFEKAMALFFKMKMLGITPDVQILAKLV---ASSPEERVVIMLLGERPKDINDEGMIF 401

Query: 118 -FNPPVRGRDLLVQGLLNAGYLESAKQMVNKM--------------IKQGF---VLDLET 159
            FN        +++ L+NAG +ES   ++  M              I Q F   + +  +
Sbjct: 402 LFNS-------VLKFLVNAGKVESTCYLLQLMMGNESRSDNIHILDIHQTFKKLLPNTAS 454

Query: 160 FNSLIETICKSG---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           FN +I  + K+    + +  + ++  + +LG   D   Y  LI A+ K+  + E+++LL 
Sbjct: 455 FNIVIHGLLKTTSKLDQDAALSLFEDMVQLGCERDQLLYNNLIDALCKSDRLKESYKLLR 514

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
           ++ +   +P    Y  I   + RR     A     EM+  GH P     T+L+    + G
Sbjct: 515 DMEQSRLQPTHFTYNSIFGCLCRREDTVGAIELLREMRGHGHEPWIKHSTLLVKQLCKNG 574

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           R +EA+N+L +M   G  P    +    DGL    K D A
Sbjct: 575 RAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRA 614



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 110/244 (45%), Gaps = 6/244 (2%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQ---QCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +L++++  K+G    A+E  N      C+     ++ Y++ +  L ++     A  L + 
Sbjct: 564 TLLVKQLCKNG---RAIEASNFLADMVCEGFLPDIVSYSAAMDGLVKINKLDRALELFQD 620

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +  +G  PD  ++ IL+  +C +GK+ EA  FL +M   G  P     +LL+      G 
Sbjct: 621 ICTRGCRPDVVSHNILIKGYCKAGKVNEAYNFLHKMRVAGLVPSAVSYNLLINEWCKNGD 680

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A   +++M ++     + ++ +LI   C SG  +    ++  + + G   +  TY  
Sbjct: 681 IDKAILCLSQMNEENKKPTIISYTTLINGCCNSGRPDDAKILWNEMQEKGCSPNRITYMA 740

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + K G  DEA    H++ E   KP   +   +I     +  F  AF    E   KG
Sbjct: 741 IVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVALIDAFISKHNFSMAFNILKETIEKG 800

Query: 258 HPPN 261
           + P+
Sbjct: 801 NIPD 804



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 6/227 (2%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFH 69
           +  S++P+ L + +   G  GLV+ A  +F++  + + C      YN LL  L +     
Sbjct: 151 FRCSMTPRALGVFLRCLGSVGLVEEANYLFDQVRSMDLCIPNNYSYNCLLEILSKTNSID 210

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR--DL 127
                +  M   G+  DK T   ++ A+C++GK  +A     +M ++G+   V G    +
Sbjct: 211 SIENRLMEMKDFGWEVDKYTLTPVLMAYCNAGKFDKALIVFNDMHERGW---VDGYVFSI 267

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L       G ++   Q +++M  Q  +L+ +TF +LI    K    +  +++   + KLG
Sbjct: 268 LALAFSKWGEVDRTMQFIDRMEDQNLMLNGKTFYALIHGFVKESREDMALKLLEKMLKLG 327

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              DVS Y +LI  + K    ++A  L   +   G  P   + A ++
Sbjct: 328 FTLDVSIYDVLIGGLCKKRAFEKAMALFFKMKMLGITPDVQILAKLV 374



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  S  + +L+I E+ K+G +D A+   ++    N +  ++ Y +L+   C    
Sbjct: 656 MRVAGLVPSAVSYNLLINEWCKNGDIDKAILCLSQMNEENKKPTIISYTTLINGCCNSGR 715

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  KG  P++ TY  +V+  C  GK  EA  +   M +K   P       
Sbjct: 716 PDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSVA 775

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           L+   ++      A  ++ + I++G + D
Sbjct: 776 LIDAFISKHNFSMAFNILKETIEKGNIPD 804


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 153/304 (50%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F K G V+ A ++FN+         +  YN ++ ALC+ +    A A++R+M+ KG
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD  TY  L+  + S+G+ +EA    ++M+ +G  P V   + L+  L   G ++ A+
Sbjct: 282 VLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDAR 341

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M  +G   D+ ++  ++      G +    E++  +   G+  D   + +LI A 
Sbjct: 342 DVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAY 401

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           +K GM+D A  + + + E G +P    Y+ +I  + R G+ DDA   F++M  +G  P+ 
Sbjct: 402 AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSI 461

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y  LI      G  ++A + +++M   G+ P   CF+ + + L   G+   A+ I   
Sbjct: 462 STYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDF 521

Query: 323 EVSL 326
            +S+
Sbjct: 522 TISI 525



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 132/286 (46%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +++  +   G + +  E+FN   +        ++N L+ A  +  +   A  +   M  +
Sbjct: 361 IMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQ 420

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  TY+ ++ A C  GKM +A E   +M D+G  P +     L+QG    G L  A
Sbjct: 421 GVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKA 480

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           K +V +M+ +G   D+  FN +I  +CK G V     ++     +GL  +V  Y  L+  
Sbjct: 481 KDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDG 540

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               G ++ A R+   +V  G +P   +Y  ++ G  + G+ D+    F E+  KG  P+
Sbjct: 541 YCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPS 600

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +Y +++    + GR V A     EMTE G+      + +V  GL
Sbjct: 601 TTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGL 646



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 136/275 (49%), Gaps = 2/275 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C    + YN+++    +    + A  L   M+++G  PD  TY  +VNA C +  M +A+
Sbjct: 212 CLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAE 271

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M DKG  P     + L+ G  + G  + A ++  KM  QG + D+ T NSL+ ++
Sbjct: 272 AILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASL 331

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+++   +++ S+   G   D+ +YKI++   +  G + +   L + ++ DG  P  
Sbjct: 332 CKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDS 391

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            ++  +IK   + G  D A   F+EM+ +G  P+   Y+ +I    R G+  +A     +
Sbjct: 392 HIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQ 451

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           M + G+ P    +  +  G   C   DL +  +L+
Sbjct: 452 MIDQGVAPSISTYHFLIQGF--CTHGDLLKAKDLV 484



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 138/280 (49%), Gaps = 11/280 (3%)

Query: 5   IELMKPYNLSVS------PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           ++L + +NL +S          +++I+ + K G++D A  +FN+      +  V+ Y+++
Sbjct: 373 VDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTV 432

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + ALC +     A     +MI +G  P   TY  L+  +C+ G + +A++ + +M +KG 
Sbjct: 433 IAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGM 492

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +   + ++  L   G +  A+ + +  I  G   ++  +N+L++  C  G++E  + 
Sbjct: 493 RPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALR 552

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  +   G+  +V  Y  L+    K G IDE   L   ++  G KP  +LY  I+ G+F
Sbjct: 553 VFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLF 612

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           + G+   A   F EM   G   +R  Y++++     GG F
Sbjct: 613 QAGRTVPAKVKFHEMTESGIAMDRYTYSIVL-----GGLF 647



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 125/294 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++    KHG + +A +VF+       +  +  Y  +L              L   M
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD   + +L+ A+   G +  A     EM ++G  P V     ++  L   G +
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +  N+MI QG    + T++ LI+  C  G++    ++   +   G+  D+  +  +
Sbjct: 443 DDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFI 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + +A  +    +  G  P   +Y  ++ G    G+ ++A   F  M   G 
Sbjct: 503 INNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGI 562

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN  VY  L+    + GR  E  +   E+   G+ P +  ++++  GL   G+
Sbjct: 563 QPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGR 616



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 119/271 (43%), Gaps = 3/271 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            ++ ++LL  LCE K    A   L+ RM   G VPD  +Y I++ + CS  K  +A E L
Sbjct: 143 TIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELL 202

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           + M++ G    P     + ++ G    G +  A  + N+M+++G   DL T+N ++  +C
Sbjct: 203 RMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALC 262

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++    +   +   G+  D  TY  LI   S  G   EA R+   +   G  P   
Sbjct: 263 KARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVV 322

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
               ++  + + G+  DA   F  M +KG   +   Y +++      G  V+       M
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM 382

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G+ P S  F+++      CG  D A  I
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATII 413



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 122/271 (45%), Gaps = 1/271 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II    K G V +A  +F+   +      V++YN+L+   C V     A  +   M+ 
Sbjct: 500 NFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVS 559

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P+   Y  LVN +C  G++ E     +E+  KG  P     ++++ GL  AG    
Sbjct: 560 AGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVP 619

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK   ++M + G  +D  T++ ++  + K+   +  + ++  +  + +  D++T  I+I 
Sbjct: 620 AKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIA 679

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HP 259
            + +   ++EA  L  ++   G  P    Y+ ++  + + G  ++A   FS M+  G   
Sbjct: 680 GMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQ 739

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           PN  +   ++         V A  YL ++ E
Sbjct: 740 PNSQLLNHVVRELLEKREIVRAGTYLSKIDE 770



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 120/277 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    + G +D+AVE FN+         +  Y+ L+   C       A  L+ +M
Sbjct: 428 TYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD   +  ++N  C  G++ +AQ         G +P V   + L+ G    G +
Sbjct: 488 MNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKM 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A ++ + M+  G   ++  + +L+   CK G ++  + ++  +   G+    + Y I+
Sbjct: 548 ENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNII 607

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +AG    A    H + E G       Y+ ++ G+F+    D+A   F E+     
Sbjct: 608 LHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNV 667

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +     ++I    +  R  EA +    ++  GL P
Sbjct: 668 KIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVP 704



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 1/165 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +++   T S+++    K+   D A+ +F +  A N +  +   N ++  + +++ 
Sbjct: 627 MTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRR 686

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRD 126
              A  L   + R G VP   TY+I++      G + EA +    M + G   P  +  +
Sbjct: 687 VEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVEEADDMFSSMENAGCEQPNSQLLN 746

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +V+ LL    +  A   ++K+ ++ F LD  T   LI+     G
Sbjct: 747 HVVRELLEKREIVRAGTYLSKIDERSFSLDHSTTTLLIDLFSSKG 791


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 143/314 (45%), Gaps = 3/314 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    L+ +    + II+ + K G V  A+EVF       C+     Y+SL++ L
Sbjct: 355 ETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGL 414

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + +  H A ALI +M   G  P   TY  L+   C   +   A    + M   G  P  
Sbjct: 415 IQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDE 474

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           +  ++L   L  +G  E A      ++++G VL   T+ SL++   K+G  +F   +   
Sbjct: 475 QAYNVLTHALCKSGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEK 531

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G  AD  TY +L+ A+ K   ++EA  +L  +   G K     Y  II  M + G+
Sbjct: 532 MVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F+EM   GH P+   YT+ I+   + G+  EA + + EM   G+ P    +++
Sbjct: 592 HDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNV 651

Query: 303 VTDGLKNCGKHDLA 316
             +G  + G  D A
Sbjct: 652 FINGCGHMGYMDRA 665



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 149/373 (39%), Gaps = 62/373 (16%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL----YNS 57
           ++  E+M+   L+   Q  +++     K G  + A        +F  ++ V+L    Y S
Sbjct: 459 FRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAY-------SFLVRKGVVLTKVTYTS 511

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+    +      A  LI +M+ +G   D  TY++L+ A C   K+ EA   L +M+  G
Sbjct: 512 LVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSG 571

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
               +    +++  ++  G  + AK M N+MI  G      T+   I + CK G++E   
Sbjct: 572 VKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAE 631

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF------------------------- 212
            +   + + G+  DV TY + I      G +D AF                         
Sbjct: 632 HLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHF 691

Query: 213 --------------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                                     +LL  +V+ G  P    Y+ II G  +  + ++A
Sbjct: 692 LKMSLVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEA 751

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M+ K   PN  +YTMLI  C     F +A +++ +M E G  P    +  +  G
Sbjct: 752 CVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVG 811

Query: 307 LKNCGKHDLAEKI 319
           L + G +D A+ +
Sbjct: 812 LCDEGDYDKAKSL 824



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 140/314 (44%), Gaps = 4/314 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M    +  S  T + +I+ + K G + +A+ +        C      YN L++ L
Sbjct: 216 RVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGL 275

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  K    A  L+   I +GF P   T+  ++N +C + ++ +A      M        +
Sbjct: 276 CGEKP-DEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDL 334

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           +   +L+  L+     + AK+ V++M   G   ++  + S+I+  CK G+V   +E++  
Sbjct: 335 QAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRL 394

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   +  TY  LI  + +   + +A  L+  + EDG  P    Y  +I+G  ++ +
Sbjct: 395 MEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE 454

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           FD+AF  F  M+  G  P+   Y +L     + GR  EA ++LV     G+      +  
Sbjct: 455 FDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLV---RKGVVLTKVTYTS 511

Query: 303 VTDGLKNCGKHDLA 316
           + DG    G  D A
Sbjct: 512 LVDGFSKAGNTDFA 525



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 129/315 (40%), Gaps = 44/315 (13%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C++    Y  L+  LCE +    A  L+  M++ G   +  TY +L+   C  G++  A+
Sbjct: 156 CRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYTLLIKGLCKEGRIHGAR 215

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL----------------------------- 138
             L+EM  +G  P V   + ++ G   +G +                             
Sbjct: 216 RVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGL 275

Query: 139 -----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV----EMYYSVCKLGLC 189
                + A++++N  I +GF   + TF ++I   CK+  ++  +     M  S CKL   
Sbjct: 276 CGEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKL--- 332

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+  Y +LI  + K     EA   +  +  +G  P   +Y  II G  + G+   A   
Sbjct: 333 -DLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEV 391

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F  M+ +G  PN   Y+ LI    +  +  +A   + +M E G+TP    +  +  G   
Sbjct: 392 FRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG--Q 449

Query: 310 CGKHDLAEKIELLEV 324
           C KH+      L E+
Sbjct: 450 CKKHEFDNAFRLFEM 464



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 17/304 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++II E  K G  D+A  +FN+  +   +     Y   + + C++     A  LI  M R
Sbjct: 580 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 639

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-----VRGRDLLVQGLLNA 135
            G  PD  TY + +N     G M  A   L+ M D    P      +  +  L   L++A
Sbjct: 640 DGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDA 699

Query: 136 GY-----------LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            Y           L++  Q++ +M+K G      T++S+I   CK+  +E    ++  + 
Sbjct: 700 HYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLFDHMR 759

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  +   Y +LI       +  +A   + +++E G +P    Y  +I G+   G +D
Sbjct: 760 GKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPHLESYHYLIVGLCDEGDYD 819

Query: 245 DAFCFFSE-MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            A   F + + ++ +  N   + +L     + G     +  L  M        S  + +V
Sbjct: 820 KAKSLFCDLLGMEDYNHNEVAWKILNDGLLKAGHVDFCSQLLSAMENRHCQIDSETYSMV 879

Query: 304 TDGL 307
           TD +
Sbjct: 880 TDNI 883



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 39/212 (18%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  IEL           T+  ++E   KHGL   AV                 Y+S++ 
Sbjct: 707 MWNWIEL----------DTVWQLLERMVKHGLNPTAVT----------------YSSIIA 740

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L   M  K   P++  Y +L+   C      +A  F+ +M + GF P
Sbjct: 741 GFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQP 800

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS-------LIETICKSGEV 173
            +     L+ GL + G  + AK +   +      L +E +N        L + + K+G V
Sbjct: 801 HLESYHYLIVGLCDEGDYDKAKSLFCDL------LGMEDYNHNEVAWKILNDGLLKAGHV 854

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +FC ++  ++       D  TY ++   + +A
Sbjct: 855 DFCSQLLSAMENRHCQIDSETYSMVTDNIHEA 886


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 142/298 (47%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +S  +  ++I    K G    A+ +  +   ++ +  V++Y+ ++  LC+  L   AY L
Sbjct: 161 LSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDL 220

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M+ KG  PD  TY+ILV+ +C  G++  A + L EM  +  NP +    +LV  L  
Sbjct: 221 YTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCK 280

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G ++ A+ ++  M+K    LD+  +++L++  C   EV     ++Y++ ++G+  DV  
Sbjct: 281 EGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHC 340

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y I+I  + K   +DEA  L   + +    P    Y  +I  + + G+    +  F EM 
Sbjct: 341 YSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEML 400

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            +G PP+   Y  LI    + G    A     +M +  + P    F ++ DGL   G+
Sbjct: 401 DRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGR 458



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 151/343 (44%), Gaps = 37/343 (10%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P  +  S+II+   K  LVD A +++ +         V+ Y+ L+   C V   + A
Sbjct: 193 SIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRA 252

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ-------------------- 111
             L+  M+ +   PD  TY ILV+A C  GK++EA+  L                     
Sbjct: 253 IDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDG 312

Query: 112 ---------------EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
                           M+  G  P V    +++ GL     ++ A  +  ++ ++  V D
Sbjct: 313 YCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPD 372

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
             T+ SLI+ +CKSG + +  +++  +   G   DV TY  LI A+ K G +D A  L +
Sbjct: 373 TVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFN 432

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + +   +P    +  ++ G+ + G+  +A  FF ++  KG+  N   YT++I    + G
Sbjct: 433 KMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEG 492

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              EA      M + G    +  F+++     +  ++D AEK+
Sbjct: 493 LLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKL 535



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 145/338 (42%), Gaps = 43/338 (12%)

Query: 27  FGKHGL------VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           F  H L       D+AV  FN     +       +N +L +L  VK +  A +L ++M  
Sbjct: 27  FHSHSLPPLTHNADDAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMEL 86

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD  T  I++N +C  G++  A   + ++   G+ P     + L++GL   G ++ 
Sbjct: 87  SEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKE 146

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +  +K++ QGF L   ++  LI  +CK GE    + +   + +  +  +V  Y ++I 
Sbjct: 147 ALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIID 206

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K  ++DEA+ L   +V  G  P    Y+ ++ G    GQ + A    +EM ++   P
Sbjct: 207 RLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINP 266

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLV---------------------------------- 286
           +   YT+L+    + G+  EA N L                                   
Sbjct: 267 DIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVF 326

Query: 287 -EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             MT+MG+TP   C+ ++ +GL  C    + E + L E
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGL--CKIKRVDEALNLFE 362



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 2/212 (0%)

Query: 13  LSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V+P     S++I    K   VD A+ +F +    N     + Y SL+  LC+      
Sbjct: 332 MGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISY 391

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            + L   M+ +G  PD  TY  L++A C +G +  A     +M D+   P V    +L+ 
Sbjct: 392 VWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLD 451

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L++A +    ++ +G+ L++ T+  +I  +CK G ++  + +   +   G  +
Sbjct: 452 GLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCIS 511

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           D  T++I+I A       D+A +L+  ++  G
Sbjct: 512 DAVTFEIMIRAFFDKDENDKAEKLVREMIARG 543



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 77/161 (47%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T + +I+   K G +    ++F++         V+ YN+L+ ALC+      A
Sbjct: 368 NMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRA 427

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            AL  +M  +   P+  T+ IL++  C  G+++ A EF Q++  KG+   VR   +++ G
Sbjct: 428 IALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMING 487

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           L   G L+ A  + ++M   G + D  TF  +I       E
Sbjct: 488 LCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKDE 528


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    ++ Y+SL+   C       A  +   M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C   ++ E  E  +EMS +G        ++L+QGL  AG  
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G   ++ T+N+L++ +CK+G++E  + ++  + +  +   + TY I+
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 302

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  NL   G KP    Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 303 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 362

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            PN   Y  LI    R G    +A  + EM   G    +    LVT+ L +
Sbjct: 363 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 413



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A+ +F +      +  V+ Y+SL+  LC    +  A  L+  MI + 
Sbjct: 57  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 116

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 117 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 176

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM   M+ +    D+ T+N+LI+  CK   VE  +E++  + + GL  +  TY ILI  +
Sbjct: 177 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 236

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
            +AG  D A  +   +V DG  P                                  P++
Sbjct: 237 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 296

Query: 230 YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           Y    +I+GM + G+ +D +  F  + +KG  P+   Y  +I+   R G   EA     E
Sbjct: 297 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 356

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S C++ L+   L++  +   AE I+
Sbjct: 357 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 390



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 6/279 (2%)

Query: 3   KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K +E  K Y+     S+ P   T S +I  F  H  +D A ++F    + +C   V+ YN
Sbjct: 136 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 195

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C+ K       + R M ++G V +  TY IL+     +G    AQE  +EM   
Sbjct: 196 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 255

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+ GL   G LE A  +   + +      + T+N +IE +CK+G+VE  
Sbjct: 256 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 315

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +++ ++   G+  DV  Y  +I    + G  +EA  L   + EDG  P    Y  +I+ 
Sbjct: 316 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 375

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             R G  + +     EM+  G   +     ++  M   G
Sbjct: 376 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 414



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 111/247 (44%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ALI RM+ KG  PD  TY ++VN  C  G    A   L +M      P V   + ++ GL
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               +++ A  +  +M  +G   ++ T++SLI  +C  G       +   + +  +  DV
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI A  K G + EA +L   +V+    P    Y+ +I G     + D+A   F  
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   P+   Y  LI    +  R  E      EM++ GL   +  ++++  GL   G 
Sbjct: 182 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 241

Query: 313 HDLAEKI 319
            D+A++I
Sbjct: 242 CDMAQEI 248



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 121/278 (43%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           + ++  A  CQ  ++ Y  ++  LC+      A+ L+ +M +    P    Y  +++  C
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
               M +A    +EM  KG  P V     L+  L N G    A ++++ MI++    D+ 
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           TF++LI+   K G++    ++Y  + K  +   + TY  LI        +DEA ++   +
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V     P    Y  +IKG  +  + ++    F EM  +G   N   Y +LI    + G  
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 242

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             A     EM   G+ P    ++ + DGL   GK + A
Sbjct: 243 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 280


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 140/274 (51%), Gaps = 2/274 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+F +  +  C+     YN L+ +LC       A  ++++M   G      TY  L++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C + K+REA+E   EM   G +      + L+ GL  +  +E A Q++++MI +G   
Sbjct: 479 GFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKP 538

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+NSL+   C+ G+++   ++  ++   G   D+ TY  LI  + KAG ++ A +LL
Sbjct: 539 DKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLL 598

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLIT-MCG 273
            ++   G    P  Y P+I+G+FR+ +  +A   F EM  +    P+   Y ++   +C 
Sbjct: 599 RSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCN 658

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            GG   EA ++LVE+ E G  P      ++ +GL
Sbjct: 659 GGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 148/320 (46%), Gaps = 3/320 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y L    +T + I++ + + G +D A+ +  +   F C    +  N ++   C+
Sbjct: 212 LEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271

Query: 65  VKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A   I+ M  + GF PD+ T+  LVN  C +G ++ A E +  M  +G++P V 
Sbjct: 272 EGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY 331

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL   G ++ A + +++MI +    +  T+N+LI T+CK  +VE   E+   +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  DV T+  LI  +        A  L   +   G +P    Y  +I  +  +G+ 
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D+A     +M++ G   +   Y  LI    +  +  EA     EM   G++  S  ++ +
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            DGL  C    + +  +L++
Sbjct: 512 IDGL--CKSRRVEDASQLMD 529



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 136/292 (46%), Gaps = 6/292 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V  AVE  ++    +C    + YN+L+  LC+      A  L R +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  T+  L+   C +   R A E  +EM  KG  P     ++L+  L + G L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  M+ +M   G    + T+N+LI+  CK+ ++    E++  +   G+  +  TY  L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  +++A +L+  ++ +G KP    Y  ++    R G    A      M   G 
Sbjct: 512 IDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL---VEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  LI+   + GR VE A+ L   ++M  + LTP    ++ V  GL
Sbjct: 572 EPDIVTYGTLISGLCKAGR-VEVASKLLRSIQMKGIALTP--HAYNPVIQGL 620



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G V +A+E+ +          V  YNS++  LC++     A   + +M
Sbjct: 297 TFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQM 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  TY  L++  C   ++ EA E  + ++ KG  P V   + L+QGL      
Sbjct: 357 ITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNH 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G   D  T+N LI+++C  G+++  + M   +   G    V TY  L
Sbjct: 417 RVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  I EA  +   +   G       Y  +I G+ +  + +DA     +M ++G 
Sbjct: 477 IDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQ 536

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   RGG   +AA+ +  MT  G  P    +  +  GL   G+ ++A K
Sbjct: 537 KPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596

Query: 319 I 319
           +
Sbjct: 597 L 597



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 146/328 (44%), Gaps = 10/328 (3%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN-KCTAFNCQQCVLLYNSLL 59
           M K +E MK     +      ++IE + +  L D  + V +     F  +     YN +L
Sbjct: 102 MRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRML 161

Query: 60  FALCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             L +   +KL   A+A   +M   G  PD  T+ +L+ A C + ++R A   L++M   
Sbjct: 162 NLLVDGNNLKLVEIAHA---KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY 218

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P  +    ++QG +  G L+ A ++  +M++ G      + N ++   CK G VE  
Sbjct: 219 GLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDA 278

Query: 177 VEMYYSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +     +  + G   D  T+  L+  + KAG +  A  ++  ++++G+ P    Y  +I 
Sbjct: 279 LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVIS 338

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+  +A  F  +M  +   PN   Y  LI+   +  +  EA      +T  G+ P
Sbjct: 339 GLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               F+ +  GL     H +A  +EL E
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVA--MELFE 424



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 37/171 (21%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F + G +  A ++    T+  C+  ++ Y +L+  LC+      A  L+R +
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 79  IRKGFV------------------------------------PDKRTYAILVNAWCSSG- 101
             KG                                      PD  +Y I+    C+ G 
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGGG 661

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            +REA +FL E+ +KGF P      +L +GLL     E+  ++VN ++++ 
Sbjct: 662 PIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA 712


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T S +I+ F K G +  A +++++    +    ++ Y+SL+   C       A  +   M
Sbjct: 942  TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 1001

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + K   PD  TY  L+  +C   ++ E  E  +EMS +G        ++L+QGL  AG  
Sbjct: 1002 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 1061

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            + A+++  +M+  G   ++ T+N+L++ +CK+G++E  + ++  + +  +   + TY I+
Sbjct: 1062 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 1121

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  + KAG +++ + L  NL   G KP    Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 1122 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 1181

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             PN   Y  LI    R G    +A  + EM   G    +    LVT+ L +
Sbjct: 1182 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 1232



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 36/334 (10%)

Query: 23   IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
            II+   K+  +D+A+ +F +      +  V+ Y+SL+  LC    +  A  L+  MI + 
Sbjct: 876  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 83   FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              PD  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 936  INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 995

Query: 143  QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            QM   M+ +    D+ T+N+LI+  CK   VE  +E++  + + GL  +  TY ILI  +
Sbjct: 996  QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 1055

Query: 203  SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
             +AG  D A  +   +V DG  P                                  P++
Sbjct: 1056 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 1115

Query: 230  YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            Y    +I+GM + G+ +D +  F  + +KG  P+   Y  +I+   R G   EA     E
Sbjct: 1116 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 1175

Query: 288  MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
            M E G  P S C++ L+   L++  +   AE I+
Sbjct: 1176 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 1209



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 1/258 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+  ++  F +   V +AV + +K      +  ++ YN+++ +LC+ K  + A+   + +
Sbjct: 260 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 319

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY  LVN  C+S +  +A   L +M  K   P V     L+   +  G +
Sbjct: 320 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 379

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M++     D+ T++SLI  +C    ++   +M+  +   G  ADV +Y  L
Sbjct: 380 LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 439

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +++  +L   + + G       Y  +I+G F+ G  D A  FFS+M   G 
Sbjct: 440 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 499

Query: 259 PPNRPVYTMLI-TMCGRG 275
            P+   Y +L+  +C  G
Sbjct: 500 SPDIWTYNILLGGLCDNG 517



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V++A + F +      +  V+ Y +L+  LC    +  A  L+  MI+K 
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L++A+  +GK+ EA+E  +EM     +P +     L+ GL     ++ A 
Sbjct: 359 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 418

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM + M+ +G + D+ ++N+LI   CK+  VE  ++++  + + GL ++  TY  LI   
Sbjct: 419 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 478

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG +D+A      +   G  P    Y  ++ G+   G+ + A   F +M+ +    + 
Sbjct: 479 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDI 538

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             YT +I    + G+  EA +    ++  GL P    +  +  GL  C K  L E
Sbjct: 539 VTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL--CTKGLLHE 591



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 25  EEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           E+  ++GL    +D+AV +F +         ++ ++ LL A+ ++  F    +L  +M  
Sbjct: 664 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 723

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   +  TY+IL+N +C   ++  A   L +M   G+ P +     L+ G  ++  +  
Sbjct: 724 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 783

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +V++M   G+  +  TFN+LI  +    +    + +   +   G   D+ TY +++ 
Sbjct: 784 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 843

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G  D AF LL+ + +   +P   +Y  II G+ +    DDA   F EM+ KG  P
Sbjct: 844 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 903

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           N   Y+ LI+     GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 904 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 962



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 123/243 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ F K+G V  A E+F +    +    ++ Y+SL+  LC       A  +   M
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG + D  +Y  L+N +C + ++ +  +  +EMS +G        + L+QG   AG +
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++  ++M   G   D+ T+N L+  +C +GE+E  + ++  + K  +  D+ TY  +
Sbjct: 485 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G ++EA+ L  +L   G KP    Y  ++ G+  +G   +    +++MK +G 
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 604

Query: 259 PPN 261
             N
Sbjct: 605 MKN 607



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C       A +L+ +M+  G+ PD   Y  ++++ C + ++ +A +F +E+  K
Sbjct: 263 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 322

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V     LV GL N+     A ++++ MIK+    ++ T+++L++   K+G+V   
Sbjct: 323 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 382

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E++  + ++ +  D+ TY  LI  +     IDEA ++   +V  G       Y  +I G
Sbjct: 383 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 442

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +  + +D    F EM  +G   N   Y  LI    + G   +A  +  +M   G++P 
Sbjct: 443 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 502

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
              ++++  GL  C   +L + + + E
Sbjct: 503 IWTYNILLGGL--CDNGELEKALVIFE 527



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 6/279 (2%)

Query: 3    KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
            K +E  K Y+     S+ P   T S +I  F  H  +D A ++F    + +C   V+ YN
Sbjct: 955  KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 1014

Query: 57   SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            +L+   C+ K       + R M ++G V +  TY IL+     +G    AQE  +EM   
Sbjct: 1015 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 1074

Query: 117  GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
            G  P +   + L+ GL   G LE A  +   + +      + T+N +IE +CK+G+VE  
Sbjct: 1075 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 1134

Query: 177  VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             +++ ++   G+  DV  Y  +I    + G  +EA  L   + EDG  P    Y  +I+ 
Sbjct: 1135 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 1194

Query: 237  MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
              R G  + +     EM+  G   +     ++  M   G
Sbjct: 1195 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 1233



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            TLS ++  +     +  AV + ++      Q   + +N+L+  L        A ALI RM
Sbjct: 767  TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 826

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + KG  PD  TY ++VN  C  G    A   L +M      P V   + ++ GL    ++
Sbjct: 827  VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 886

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            + A  +  +M  +G   ++ T++SLI  +C  G       +   + +  +  DV T+  L
Sbjct: 887  DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 946

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I A  K G + EA +L   +V+    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 947  IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             P+   Y  LI    +  R  E      EM++ GL   +  ++++  GL   G  D+A++
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 319  I 319
            I
Sbjct: 1067 I 1067



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 128/298 (42%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I     H     A+ + ++  A  CQ  ++ Y  ++  LC+      A+ L+ +M
Sbjct: 802  TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 861

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    P    Y  +++  C    M +A    +EM  KG  P V     L+  L N G  
Sbjct: 862  EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 921

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              A ++++ MI++    D+ TF++LI+   K G++    ++Y  + K  +   + TY  L
Sbjct: 922  SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 981

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I        +DEA ++   +V     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 982  INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 1041

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              N   Y +LI    + G    A     EM   G+ P    ++ + DGL   GK + A
Sbjct: 1042 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 1099



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 141/336 (41%), Gaps = 25/336 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T + +I+ F + G VD A E F++   F     +  YN LL  LC+   
Sbjct: 459 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 518

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M ++    D  TY  ++   C +GK+ EA      +S KG  P +     
Sbjct: 519 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 578

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVL--------DLETFNSLIETICKSGEV-EFCVE 178
           ++ GL   G L   + +  KM ++G +         D+     LI+ +   G       +
Sbjct: 579 MMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKD 638

Query: 179 MYYSVCKLGLC-----ADVSTYKILIPAVSKAGM----IDEAFRLLHNLVEDGHKPFPSL 229
           +   VCK  L      +  ++Y      +S+ G+    +D+A  L   +V+   +PFPS+
Sbjct: 639 IKSGVCKKALSLLRAFSGKTSYDYR-EKLSRNGLSELKLDDAVALFGEMVK--SRPFPSI 695

Query: 230 --YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             ++ ++  + +  +FD       +M+  G P N   Y++LI    R  +   A   L +
Sbjct: 696 IEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGK 755

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M ++G  P       + +G   C    ++E + L++
Sbjct: 756 MMKLGYEPNIVTLSSLLNGY--CHSKRISEAVALVD 789



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 2/226 (0%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+ +A +   +M      P +   + L+  ++     +    +  KM   G   DL TFN
Sbjct: 168 KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 227

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I   C   +V   + +   + KLG   D  T   L+    +   + +A  L+  +VE 
Sbjct: 228 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 287

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G+KP    Y  II  + +  + +DAF FF E++ KG  PN   YT L+       R+ +A
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           A  L +M +  +TP    +  + D     GK  + E  EL E  +R
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGK--VLEAKELFEEMVR 391



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 35/275 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A+++F+          ++ +N LL A+ ++K +    +L ++M   G   D  T+ I
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N +C   ++  A   L                                    KM+K G
Sbjct: 229 VINCFCCCFQVSLALSIL-----------------------------------GKMLKLG 253

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  T  SL+   C+   V   V +   + ++G   D+  Y  +I ++ K   +++AF
Sbjct: 254 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 313

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                +   G +P    Y  ++ G+    ++ DA    S+M  K   PN   Y+ L+   
Sbjct: 314 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 373

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            + G+ +EA     EM  M + P    +  + +GL
Sbjct: 374 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 408



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/336 (19%), Positives = 132/336 (39%), Gaps = 33/336 (9%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   + +   T + +I    K G V+ A  +F   +    +  ++ Y +++  LC  
Sbjct: 527 EDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 586

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG- 124
            L H   AL  +M ++G + +  T         S G +  + E +++M   G+ P +   
Sbjct: 587 GLLHEVEALYTKMKQEGLMKNDCTL--------SDGDITLSAELIKKMLSCGYAPSLLKD 638

Query: 125 ------------------------RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
                                   R+ L +  L+   L+ A  +  +M+K      +  F
Sbjct: 639 IKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEF 698

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           + L+  I K  + +  + +   +  LG+  +  TY ILI    +   +  A  +L  +++
Sbjct: 699 SKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMK 758

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G++P     + ++ G     +  +A     +M + G+ PN   +  LI       +  E
Sbjct: 759 LGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASE 818

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           A   +  M   G  P    + +V +GL   G  DLA
Sbjct: 819 AMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 4/292 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G +  A ++F++    +    ++ YNSL+   C       A  +   M
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K  +PD  TY  L+  +C + ++ E  E  +EMS +G        + L+QGL  AG  
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 447

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  KM+  G   D+ T++ L++ +CK G++E  + ++  + K  +  ++ TY I+
Sbjct: 448 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  +L   G KP   +Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 567

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDG 306
            P+   Y  LI    R G    +A  + EM   G     + IS   +++ DG
Sbjct: 568 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 619



 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 157/334 (47%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A ++FNK      +  V  YNSL+  LC    +  A  L+  MI + 
Sbjct: 262 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T+  L++A+   GK+ EA++   EM  +  +P +   + L+ G      L+ A+
Sbjct: 322 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 381

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+   M+ +  + D+ T+N+LI+  CK+  VE  +E++  + + GL  +  TY  LI  +
Sbjct: 382 QIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 441

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
            +AG  D A ++   +V DG  P                                  P++
Sbjct: 442 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNI 501

Query: 230 YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           Y    +I+GM + G+ +D +  F  + +KG  PN  +YT +I+   R G   EA     E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 561

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S C++ L+   L++  K   AE I+
Sbjct: 562 MKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 595



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 138/294 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++    K G +D A+ +  K      +  V++YN+++  LC+ K    A+ L  +M
Sbjct: 223 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKM 282

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  L++  C+ G+  +A   L +M ++  NP V   + L+      G L
Sbjct: 283 ETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKL 342

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MI++    ++ T+NSLI   C    ++   +++  +       DV TY  L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  ++E   L   + + G       Y  +I+G+F+ G  D A   F +M   G 
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           PP+   Y++L+    + G+  +A      + +  + P    ++++ +G+   GK
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGK 516



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 147/308 (47%), Gaps = 6/308 (1%)

Query: 25  EEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           E+  ++GL    +D+AV +F +         ++ ++ LL A+ ++  F    +L  +M  
Sbjct: 50  EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   +  TY+IL+N +C   ++  A   L +M   G+ P +     L+ G  +   +  
Sbjct: 110 LGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISE 169

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +V++M++ G+  D  TFN+LI  +    +    V +   +   G   D+ TY  ++ 
Sbjct: 170 AVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVN 229

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G ID A  LL  + +   +    +Y  II G+ +    DDAF  F++M+ KG  P
Sbjct: 230 GLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKP 289

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI- 319
           +   Y  LI+     GR+ +A+  L +M E  + P    F+ + D     GK   AEK+ 
Sbjct: 290 DVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLF 349

Query: 320 -ELLEVSL 326
            E+++ S+
Sbjct: 350 DEMIQRSI 357



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 130/271 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ LL   C       A A++ +M++ G+ PD  T + L+N +C   ++ EA   + +M 
Sbjct: 119 YSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMV 178

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P     + L+ GL        A  ++++M+ +G   DL T+ +++  +CK G+++
Sbjct: 179 EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 238

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + A+V  Y  +I  + K   +D+AF L + +   G KP    Y  +I
Sbjct: 239 LALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI 298

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  +   PN   +  LI    + G+ +EA     EM +  + 
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 358

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           P    ++ + +G     + D A++I  L VS
Sbjct: 359 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 133/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     +  AV + ++      +   + +N+L+  L        A ALI RM
Sbjct: 153 TLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  +VN  C  G +  A   L++M        V   + ++ GL    ++
Sbjct: 213 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHM 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NKM  +G   D+ T+NSLI  +C  G       +   + +  +  +V T+  L
Sbjct: 273 DDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K G + EA +L   +++    P    Y  +I G     + D+A   F+ M  K  
Sbjct: 333 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 392

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    +  R  E      EM++ GL   +  ++ +  GL   G  D+A+K
Sbjct: 393 LPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 452

Query: 319 I 319
           I
Sbjct: 453 I 453



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 138/325 (42%), Gaps = 3/325 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +  +  T S+++  F +   +  A+ V  K      +  ++  +SLL   C  
Sbjct: 105 EQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 164

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K    A AL+ +M+  G+ PD  T+  L++      K  EA   +  M  +G  P +   
Sbjct: 165 KRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 224

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             +V GL   G ++ A  ++ KM K     ++  +N++I+ +CK   ++   +++  +  
Sbjct: 225 GTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET 284

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  +   G   +A RLL +++E    P    +  +I    + G+  +
Sbjct: 285 KGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIE 344

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F EM  +   PN   Y  LI       R  EA      M      P    ++ +  
Sbjct: 345 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 306 GLKNCGKHDLAEKIELL-EVSLRSV 329
           G   C    + E +EL  E+S R +
Sbjct: 405 GF--CKAKRVEEGMELFREMSQRGL 427



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++  A  CQ  +  Y +++  LC+      A +L+++M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 247

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     +   Y  +++  C    M +A +   +M  KG  P V   + L+  L N G  
Sbjct: 248 EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRW 307

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TFNSLI+   K G++    +++  + +  +  ++ TY  L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSL 367

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA ++   +V     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 368 INGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 427

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   Y  LI    + G    A     +M   G+ P    + ++ DGL   GK + A
Sbjct: 428 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 485



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E ++   +  +  T +++IE   K G V++  ++F   +    +  V++Y +++   C  
Sbjct: 490 EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 549

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            L   A AL R M   G +PD   Y  L+ A    G    + E ++EM   GF       
Sbjct: 550 GLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 609

Query: 126 DLLVQGLLNAGYLESA 141
            +++  +L+ G LE +
Sbjct: 610 SMVIN-MLHDGRLEKS 624



 Score = 44.7 bits (104), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 79/192 (41%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L +  L+   L+ A  +  +M+K      +  F+ L+  I K  + +  + +   + 
Sbjct: 49  REKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+  +  TY IL+    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 109 NLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRIS 168

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M   G+ P+   +  LI       +  EA   +  M   G  P    +  V 
Sbjct: 169 EAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 228

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 229 NGLCKRGDIDLA 240


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 152/326 (46%), Gaps = 3/326 (0%)

Query: 6   ELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           EL++       P  L+   I+E   K   +D+A+    +      +    +YN +L  LC
Sbjct: 101 ELIEKMARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLC 160

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           + +    A  L  +M+++   P+  TY  L+N  C + ++  A E  +EM+ KG+ P   
Sbjct: 161 QEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEV 220

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ G      L +AK + +KM++   V ++ T+ +LI+ + KSG+V+   E+   +
Sbjct: 221 SYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGM 280

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K G+  +V+TY  LI    K   +DEA +LL  +V  G  P    Y  ++  + R  + 
Sbjct: 281 VKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKL 340

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           +DAF  F  M  +   P    Y  L+       +   A     EM   G  P +  +D +
Sbjct: 341 EDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTL 400

Query: 304 TDGLKNCGK-HDLAEKIELLEVSLRS 328
             GL   GK H+  E +E ++++ R+
Sbjct: 401 AWGLTRAGKVHEAQELMEKMKLTKRN 426



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T+E M    +       + ++    +   V+ A  +F K         V+ YN+L+  LC
Sbjct: 136 TVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLC 195

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      AY L + M  KG+VP + +Y  L++ +C    +  A++   +M      P V 
Sbjct: 196 KAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVV 255

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ GL  +G +++A ++++ M+K+G   ++ T++ LI+  CK   V+   ++   +
Sbjct: 256 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 315

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+   V TY IL+ ++ +A  +++AF+L   + +    P    Y  +++ +    Q 
Sbjct: 316 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 375

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           D A   ++EM  KG PP+   Y  L     R G+  EA   + +M      P  R
Sbjct: 376 DGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFGR 430



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 130/306 (42%), Gaps = 11/306 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + + F K G ++   EV+              Y  L+  LC+V  F  AY L+  M
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG-----LL 133
             K F      Y+ ++N  C   ++ EA+E +++M+   + PP    D L  G     L 
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMAR--YAPP----DALTYGPIVERLC 125

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               ++ A   V +M  +G   D   +N ++  +C+  +VE    ++  + K  +  +V 
Sbjct: 126 KTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVV 185

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  + KA  I+ A+ L   +   G+ P    Y  +I G  ++     A   F +M
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKM 245

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
                 PN   YT LI    + G+   AA  L  M + G+TP    +  + DG     + 
Sbjct: 246 VRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRV 305

Query: 314 DLAEKI 319
           D A K+
Sbjct: 306 DEAHKL 311



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 132/298 (44%), Gaps = 1/298 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           ++I    K G  D A ++ +       ++  + Y++++  LC++     A  LI +M R 
Sbjct: 50  ILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARY 109

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
              PD  TY  +V   C + ++ +A   ++EM+ +G  P     + ++ GL     +E A
Sbjct: 110 A-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEA 168

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           + +  KM+KQ    ++ T+N+LI  +CK+  +E   E++  +   G      +Y  LI  
Sbjct: 169 RLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDG 228

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K   +  A  +   +V     P    Y  +I G+ + G+   A      M  KG  PN
Sbjct: 229 FCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN 288

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              Y+ LI    +  R  EA   L +M   G+ P    ++++ + L    K + A K+
Sbjct: 289 VATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 346



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    ++ +  T ++++    +   +++A ++F       C   V+ YN+LL AL
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 369

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           C  K   GA+ L   MI KG  PD  TY  L      +GK+ EAQE +++M     NP
Sbjct: 370 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 3/165 (1%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           TFN++ +   K+G +E   E+Y  + + G     S Y ILI  + K G  DEA++LLH +
Sbjct: 12  TFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLHTM 71

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
                K     Y+ II  + +  + ++A     +M  +  PP+   Y  ++    +  R 
Sbjct: 72  RLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERLCKTKRI 130

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +A   + EM   G+ P +  ++ V  GL  C +  + E   L E
Sbjct: 131 DDALATVEEMATRGIKPDAFIYNFVLSGL--CQEEKVEEARLLFE 173



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            +T+  +    +KAG +++   +   +VE G+    S Y  +I  + + G FD+A+    
Sbjct: 10  AATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKLLH 69

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            M++K        Y+ +I    +  R VE A  L+E
Sbjct: 70  TMRLKRFKRKAIAYSTIINWLCKLNR-VEEARELIE 104


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  131 bits (330), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 152/322 (47%), Gaps = 7/322 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N+     T + II+   K   VD A  VF +      +   + YN+++  LC+ + 
Sbjct: 291 VKPSNV-----TYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQA 345

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  + ++MI KG  PD  TY I+++  C +  +  A+   Q+M DKG  P     + 
Sbjct: 346 IDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNC 405

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G L+ G  E   Q + +M       D+ T+  L++ +CK+G+      ++ S+ + G
Sbjct: 406 LIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKG 465

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   V+ Y I++    K G + E   LL+ +V +G  P   ++  +I    +R   D+  
Sbjct: 466 IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVM 525

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +MK +G  PN   Y  LI    + GR  +A     +M   G+TP +  F+ +  GL
Sbjct: 526 HIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGL 585

Query: 308 KNCGKHDLAEK--IELLEVSLR 327
               K +  E+  +E+L   +R
Sbjct: 586 CTVDKWEKVEELFLEMLNQGIR 607



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 5/309 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N+     T + II+   K   VD A  VF K      +   + YN+++  LC+ + 
Sbjct: 256 VKPNNV-----TYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQA 310

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  + ++MI +G  PD  TY  +++  C +  + +A+   Q+M DKG  P      +
Sbjct: 311 VDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTI 370

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL  A  ++ A+ +  +MI +G   +  T+N LI     +G+ E  V+    +    
Sbjct: 371 IIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHD 430

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  DV TY +L+  + K G  +EA  L  +++  G KP  ++Y  ++ G  ++G   +  
Sbjct: 431 LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMH 490

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              + M   G  PN  ++  +I    +     E  +  ++M + GL+P    +  + D L
Sbjct: 491 DLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDAL 550

Query: 308 KNCGKHDLA 316
              G+ D A
Sbjct: 551 CKLGRVDDA 559



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 143/308 (46%), Gaps = 9/308 (2%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S SP  +S  ++I  F   G VD A  +F           V+ YN+++  LC+ +    A
Sbjct: 188 SCSPDVVSYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVVTYNTIIDGLCKAQEVDRA 244

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + ++M+ KG  P+  TY  +++  C + ++  A+   Q+M DKG  P     + ++ G
Sbjct: 245 EDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDG 304

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A  ++ A+ +  +MI +G   D  T+N++I+ +CK+  ++    ++  +   G+  D
Sbjct: 305 LCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPD 364

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY I+I  + KA  +D A  +   +++ G KP    Y  +I G    GQ+++      
Sbjct: 365 NLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIK 424

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM      P+   Y +L+    + G+  EA +    M   G+ P    + ++  G    G
Sbjct: 425 EMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKG 484

Query: 312 K----HDL 315
                HDL
Sbjct: 485 ALSEMHDL 492



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 145/316 (45%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   + LM    +S + +  + +I  + K  ++D  + +F K         V+ Y +L+ 
Sbjct: 489 MHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLID 548

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC++     A     +MI +G  P+   +  LV   C+  K  + +E   EM ++G  P
Sbjct: 549 ALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRP 608

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + ++  L   G +  A+++++ M+  G   D+ ++N+LI+  C +  ++  V++ 
Sbjct: 609 DIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLL 668

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  ++ +Y  L+    KAG ID A+ L   ++  G  P    Y  I+ G+FR 
Sbjct: 669 DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRS 728

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+F +A   +  M       +   Y++++    +   F EA      +  M L      F
Sbjct: 729 GRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITF 788

Query: 301 DLVTDGLKNCGKHDLA 316
           +++ DGL   G+ + A
Sbjct: 789 NIMIDGLFKGGRKEDA 804



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 136/293 (46%), Gaps = 2/293 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + VSP   T + II+   K   VD A +VF +      +   + YN+++  LC+ +    
Sbjct: 219 MGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDM 278

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  + ++M+ KG  P   TY  +++  C +  +  A+   Q+M D+G  P     + ++ 
Sbjct: 279 AEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIID 338

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL  A  ++ A+ +  +MI +G   D  T+  +I+ +CK+  V+    ++  +   G+  
Sbjct: 339 GLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKP 398

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI      G  +E  + +  +     +P    Y  ++  + + G+ ++A   F
Sbjct: 399 NNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             M  KG  P+  +Y +++   G+ G   E  + L  M   G++P  R F+ V
Sbjct: 459 DSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTV 511



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 132/293 (45%), Gaps = 4/293 (1%)

Query: 2   WKTIE--LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+ +E   ++  N  + P  +  + ++    K G V  A  + +       +  V+ YN+
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNT 650

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  L+  M+  G  P+  +Y  L++ +C +G++  A    +EM  KG
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + ++ GL  +G    A+++   MIK   +  + T++ +++  CK+   +   
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAF 770

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +++ S+C + L  D+ T+ I+I  + K G  ++A  L   +  +G  P    Y  I + +
Sbjct: 771 KIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
              G  ++  C FS M+  G  PN  +   LI      G    A  YL ++ E
Sbjct: 831 IEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDE 883



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 143/317 (45%), Gaps = 9/317 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP NL     T ++II+   K   VD A  VF +      +     YN L+        
Sbjct: 361 VKPDNL-----TYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +      I+ M      PD  TY +L++  C +GK  EA+     M  KG  P V    +
Sbjct: 416 WEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGI 475

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G L     ++N M+  G   +   FN++I    K   ++  + ++  + + G
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQG 535

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +V TY  LI A+ K G +D+A    + ++ +G  P   ++  ++ G+    +++   
Sbjct: 536 LSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVE 595

Query: 248 CFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F EM  +G  P+   + T+L  +C + GR +EA   +  M  MGL P    ++ + DG
Sbjct: 596 ELFLEMLNQGIRPDIVFFNTVLCNLC-KEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 307 LKNCGKHDLAEKIELLE 323
             +C    + E ++LL+
Sbjct: 655 --HCFASRMDEAVKLLD 669



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 129/268 (48%), Gaps = 6/268 (2%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMI---RKGFVPDKRTYAILVNAWCSSGKMR 104
           C+  V+ YN+LL  LC+ +    A  L+  M+        PD  +Y I++N + + G++ 
Sbjct: 151 CRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVD 210

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A     EM   G +P V   + ++ GL  A  ++ A+ +  +M+++G   +  T+N++I
Sbjct: 211 KAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTII 267

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           + +CK+ EV+    ++  +   G+     TY  +I  + KA  +D A  +   +++ G K
Sbjct: 268 DGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVK 327

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  II G+ +    D A   F +M  KG  P+   YT++I    +      A   
Sbjct: 328 PDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGV 387

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +M + G+ P +  ++ +  G  + G+
Sbjct: 388 FQQMIDKGVKPNNGTYNCLIHGYLSTGQ 415



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 132/323 (40%), Gaps = 35/323 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I+ M  ++L     T  L+++   K+G  + A  +F+       +  V +Y  +L   
Sbjct: 421 QRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGY 480

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +       + L+  M+  G  P+ R +  ++ A+     + E      +M  +G +P V
Sbjct: 481 GKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNV 540

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY- 181
                L+  L   G ++ A    N+MI +G   +   FNSL+  +C   + E   E++  
Sbjct: 541 VTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLE 600

Query: 182 ------------------SVCK----------------LGLCADVSTYKILIPAVSKAGM 207
                             ++CK                +GL  DV +Y  LI     A  
Sbjct: 601 MLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASR 660

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +DEA +LL  +V  G KP    Y  ++ G  + G+ D+A+C F EM  KG  P    Y  
Sbjct: 661 MDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720

Query: 268 LITMCGRGGRFVEAANYLVEMTE 290
           ++    R GRF EA    V M +
Sbjct: 721 ILNGLFRSGRFSEARELYVNMIK 743



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 141/340 (41%), Gaps = 35/340 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   LS +  T   +I+   K G VD+AV  FN+          +++NSL++ LC V  
Sbjct: 531 MKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 68  FHG-----------------------------------AYALIRRMIRKGFVPDKRTYAI 92
           +                                     A  LI  M+  G  PD  +Y  
Sbjct: 591 WEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNT 650

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C + +M EA + L  M   G  P +   + L+ G   AG +++A  +  +M+++G
Sbjct: 651 LIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKG 710

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
               +ET+N+++  + +SG      E+Y ++ K      + TY I++    K    DEAF
Sbjct: 711 VTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAF 770

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           ++  +L     +     +  +I G+F+ G+ +DA   F+ +   G  P+   Y ++    
Sbjct: 771 KIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENL 830

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              G   E       M + G  P S   + +   L + G+
Sbjct: 831 IEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGE 870



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 110/242 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D AV++ +   +   +  ++ YN+LL   C+      AY L R M+RKG  P   TY  
Sbjct: 661 MDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNT 720

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N    SG+  EA+E    M        +    +++ G       + A ++   +    
Sbjct: 721 ILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMD 780

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD+ TFN +I+ + K G  E  ++++ ++   GL   V TY+++   + + G ++E  
Sbjct: 781 LQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELD 840

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + + G  P   +   +I+ +  RG+   A  + S++  K         +MLI++ 
Sbjct: 841 CLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLF 900

Query: 273 GR 274
            R
Sbjct: 901 SR 902



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 140/347 (40%), Gaps = 40/347 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T + +I  +   G  +  V+   + +A + +  V  Y  LL  LC+   
Sbjct: 396 VKPNN-----GTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGK 450

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A +L   MIRKG  P    Y I+++ +   G + E  + L  M   G +P  R  + 
Sbjct: 451 CNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNT 510

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV---------- 177
           ++        ++    +  KM +QG   ++ T+ +LI+ +CK G V+  V          
Sbjct: 511 VICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG 570

Query: 178 ---------EMYYSVCKL----------------GLCADVSTYKILIPAVSKAGMIDEAF 212
                     + Y +C +                G+  D+  +  ++  + K G + EA 
Sbjct: 571 VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEAR 630

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           RL+ ++V  G KP    Y  +I G     + D+A      M   G  PN   Y  L+   
Sbjct: 631 RLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGY 690

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + GR   A     EM   G+TP    ++ + +GL   G+   A ++
Sbjct: 691 CKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAREL 737



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 134/337 (39%), Gaps = 49/337 (14%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG---AYALIRRMIR---K 81
           G  GL D A+++F++         V   N LL  +   K       A +   RM+R    
Sbjct: 20  GNLGLHD-ALKLFDELLLHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSN 78

Query: 82  GFVPDKRTYAILVNAWCSSGKMR-----------------------------------EA 106
              PD  TY+I++  +C  G++                                    EA
Sbjct: 79  KVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEA 138

Query: 107 QE-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI---KQGFVLDLETFNS 162
               L++M + G    V   + L++GL +    E A+++++ M+         D+ ++N 
Sbjct: 139 MHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNI 198

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I      G+V+   + Y    ++G+  DV TY  +I  + KA  +D A  +   +VE G
Sbjct: 199 VINGFFNEGQVD---KAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKG 255

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            KP    Y  II G+ +  + D A   F +M  KG  P+   Y  +I    +      A 
Sbjct: 256 VKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAE 315

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               +M + G+ P    ++ + DGL      D AE +
Sbjct: 316 GVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGV 352



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 64/146 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+I++ F K+   D A ++F    + + Q  ++ +N ++  L +      A  L   +
Sbjct: 752 TYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAI 811

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP   TY ++       G + E       M   G  P     + L++ LL+ G +
Sbjct: 812 PANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLI 164
             A   ++K+ ++ F L+  T + LI
Sbjct: 872 PRAGAYLSKLDEKNFSLEASTTSMLI 897


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 146/311 (46%), Gaps = 1/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   I+E   K   +D+A+    +      +    +YN +L  LC+ +    A  L  +M
Sbjct: 11  TYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKM 70

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   P+  TY  L+N  C + ++  A E  +EM+ KG+ P     + L+ G      L
Sbjct: 71  VKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDL 130

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +AK + +KM++   V ++ T+ +LI+ + KSG+V+   E+   + K G+  +V+TY  L
Sbjct: 131 VAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCL 190

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +DEA +LL  +V  G  P    Y  ++  + R  + +DAF  F  M  +  
Sbjct: 191 IDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRC 250

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAE 317
            P    Y  L+       +   A     EM   G  P +  +D +  GL   GK H+  E
Sbjct: 251 HPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQE 310

Query: 318 KIELLEVSLRS 328
            +E ++++ R+
Sbjct: 311 LMEKMKLTKRN 321



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 136/295 (46%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T+E M    +       + ++    +   V+ A  +F K         V+ YN+L+  LC
Sbjct: 31  TVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLC 90

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      AY L + M  KG+VP + +Y  L++ +C    +  A++   +M      P V 
Sbjct: 91  KAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVV 150

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ GL  +G +++A ++++ M+K+G   ++ T++ LI+  CK   V+   ++   +
Sbjct: 151 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 210

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+   V TY IL+ ++ +A  +++AF+L   + +    P    Y  +++ +    Q 
Sbjct: 211 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 270

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           D A   ++EM  KG PP+   Y  L     R G+  EA   + +M      P  R
Sbjct: 271 DGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNPFGR 325



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 104/235 (44%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  +V   C + ++ +A   ++EM+ +G  P     + ++ GL     +E A+ +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             KM+KQ    ++ T+N+LI  +CK+  +E   E++  +   G      +Y  LI    K
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              +  A  +   +V     P    Y  +I G+ + G+   A      M  KG  PN   
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           Y+ LI    +  R  EA   L +M   G+ P    ++++ + L    K + A K+
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKL 241



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    ++ +  T ++++    +   +++A ++F       C   V+ YN+LL AL
Sbjct: 205 KLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRAL 264

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           C  K   GA+ L   MI KG  PD  TY  L      +GK+ EAQE +++M     NP
Sbjct: 265 CHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLTKRNP 322


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N+     T S II+   + G +D A+ +F +      +  ++ YNSL+  LC+   
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           ++    L++ M  +  +P+  T+ +L++ +   GK++EA E  +EM  KG +P     + 
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A  M++ M++     D+ TF SLI+  CK   V+  ++++  + K G
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A+  TY IL+    ++G ++ A  L   +V  G  P    Y  ++ G+   G+ + A 
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++      +  +YT++I    +GG+  +A N    +   G+ P    + ++  GL
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495

Query: 308 KNCGKHDLAEKIELL 322
             C K  L+E   LL
Sbjct: 496 --CKKGSLSEANILL 508



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G +  A E++ +          + YNSL+   C       A  ++  M
Sbjct: 277 TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLM 336

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+  L+  +C   ++ E  +  +++S +G         +LVQG   +G L
Sbjct: 337 VRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKL 396

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A+++  +M+  G + D+ T+  L++ +C +G++E  +E++  + K  +  D+  Y I+
Sbjct: 397 EIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTII 456

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  +I G+ ++G   +A     +M+  G+
Sbjct: 457 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 516

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            PN   Y  LI    R G    +A  + EM   G +  +    +V D L +
Sbjct: 517 EPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSS 567



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 2/259 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP T++   +++ +     +  A  + +     NC   ++ + SL+   C+VK      
Sbjct: 306 ISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGM 365

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R++ ++G V +  TY+ILV  +C SGK+  A+E  QEM   G  P V    +L+ GL
Sbjct: 366 KLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGL 425

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G LE A ++   + K    LD+  +  +IE +CK G+VE    ++ S+   G+  +V
Sbjct: 426 CDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNV 485

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY ++I  + K G + EA  LL  + EDG++P    Y  +I+   R G    +     E
Sbjct: 486 MTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEE 545

Query: 253 MKIKGHPPNRPVYTMLITM 271
           MK  G   +     M+I M
Sbjct: 546 MKSCGFSADASSIKMVIDM 564



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 141/319 (44%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T +   +I        V  AV +  +     CQ  V+ YNS++  +C+
Sbjct: 123 LGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICK 182

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R+M  +    D  TY+ ++++ C  G +  A    +EM  KG    +  
Sbjct: 183 SGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVT 242

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV GL  AG      Q++  M  +  + ++ TFN LI+   K G+++   E+Y  + 
Sbjct: 243 YNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMI 302

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  +  TY  L+        + EA  +L  +V +   P    +  +IKG  +  + D
Sbjct: 303 TKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVD 362

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +    F ++  +G   N   Y++L+    + G+   A     EM  +G+ P    + ++ 
Sbjct: 363 EGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILL 422

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL + GK  L + +E+ E
Sbjct: 423 DGLCDNGK--LEKALEIFE 439



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A+++F +         ++ ++     +   K F+      ++M   G   +  T  I+
Sbjct: 47  DDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIM 106

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K   A   L ++   G+ P     + L+ GL     +  A  +V +M++ G 
Sbjct: 107 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGC 166

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             ++ T+NS++  ICKSG+    +++   + +  + ADV TY  +I ++ + G ID A  
Sbjct: 167 QPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAIS 226

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G K     Y  ++ G+ + G+++D      +M  +   PN   + +LI +  
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + G+  EA     EM   G++P +  ++ + DG   C ++ L+E   +L++ +R+
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDGY--CMQNRLSEANNMLDLMVRN 339



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 133/308 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  F +      A  V  K      +     +N+L+  LC       A  L+ RM
Sbjct: 102 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARM 161

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY  +VN  C SG    A + L++M ++     V     ++  L   G +
Sbjct: 162 VENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCI 221

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  +  +M  +G    L T+NSL+  +CK+G+    V++   +    +  +V T+ +L
Sbjct: 222 DAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVL 281

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA  L   ++  G  P    Y  ++ G   + +  +A      M     
Sbjct: 282 IDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNC 341

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +T LI    +  R  E      ++++ GL   +  + ++  G    GK ++AE+
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEE 401

Query: 319 IELLEVSL 326
           +    VSL
Sbjct: 402 LFQEMVSL 409



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++IIE   K G V++A  +F        +  V+ Y  ++  LC+      A  L+R+M  
Sbjct: 454 TIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 513

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            G  P+  TY  L+ A    G +  + + ++EM   GF+       +++  L +A
Sbjct: 514 DGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSA 568


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 135/276 (48%), Gaps = 2/276 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ YN+++   C++K    A+  +R M  KG  P+  T+ +++N  C  G+++E  
Sbjct: 14  CLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETS 73

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E L EMS KG+ P     + LV G    G    A  +  +M++ G   ++ T+ SLI ++
Sbjct: 74  EVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSM 133

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK+G +   +E +  +   GLC +  TY  +I   ++ G++DEA+R+L+ +   G  P  
Sbjct: 134 CKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSI 193

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G    G+ ++A     +M  KG  P+   Y+ +I+   R      A    VE
Sbjct: 194 VTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVE 253

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M    + P +  +  +  GL  C +  L E  ++ +
Sbjct: 254 MIGKSVLPDAVTYSSLIQGL--CEQRRLTEACDMFQ 287



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 143/303 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G +    EV  + +        + YN+L+   C+   FH A  L   M
Sbjct: 55  TFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEM 114

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  P+  TY  L+N+ C +G +  A EF  +M  +G  P  R    ++ G    G L
Sbjct: 115 VRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLL 174

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M + GF+  + T+N+LI   C  G +E  + +   +   G+  DV +Y  +
Sbjct: 175 DEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTI 234

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   ++   +D AF++   ++     P    Y+ +I+G+  + +  +A   F EM     
Sbjct: 235 ISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   YT LI    + G   +A +   EM + G  P +  ++++ +GL    +   A +
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 319 IEL 321
           + L
Sbjct: 355 LLL 357



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 15/295 (5%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           + +T + II  F + GL+D A  V N+ T       ++ YN+L+   C +     A  L+
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M+ KG +PD  +Y+ +++ +  + ++  A +   EM  K   P       L+QGL   
Sbjct: 217 QDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQ 276

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L  A  M  +M+      D  T+ +LI   CK G++   + ++  + + G   D  TY
Sbjct: 277 RRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTY 336

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII---------------KGMFRR 240
            +LI  ++K     EA RLL  L  D   P    Y  +I               KG   +
Sbjct: 337 NVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMK 396

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  D+A   F  M  K H PN  +Y ++I    R G  ++A     EM  +   P
Sbjct: 397 GLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVP 451



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y SL+ ++C+    + A     +M  +G  P++RTY  ++N +   G + EA   L 
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLN 182

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM+  GF P +   + L+ G    G +E A  ++  M+ +G + D+ +++++I    ++ 
Sbjct: 183 EMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQ 242

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E++   +M   +    +  D  TY  LI  + +   + EA  +   ++     P    Y 
Sbjct: 243 ELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYT 302

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            +I    + G  + A     EM  KG  P+   Y +LI    +  R  EA   L+++
Sbjct: 303 TLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 37/248 (14%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M R G +P+  TY  +++ +C   +  EA  FL+ M  KG  P               
Sbjct: 7   KEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEP--------------- 51

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                               +L TFN +I  +C+ G ++   E+   + + G   D  TY
Sbjct: 52  --------------------NLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTY 91

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+    K G   +A  L   +V +G  P    Y  +I  M + G  + A  FF +M +
Sbjct: 92  NTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHV 151

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  PN   YT +I    + G   EA   L EMT  G  P    ++ + +G  +C    +
Sbjct: 152 RGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALING--HCVLGRM 209

Query: 316 AEKIELLE 323
            E I LL+
Sbjct: 210 EEAIGLLQ 217



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 98/264 (37%), Gaps = 52/264 (19%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P   T S +I+   +   +  A ++F +            Y +L+ A C+    + A
Sbjct: 258 SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKA 317

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDL--- 127
             L   MI+KGF+PD  TY +L+N      + +EA+  L ++  D      V    L   
Sbjct: 318 LHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIEN 377

Query: 128 -----------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
                      LV+G    G ++ A Q+   MI +    +   +N +I   C+ G V   
Sbjct: 378 CCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKA 437

Query: 177 VEMY----------YSVCKLGLC-------------------------ADVSTYKILIPA 201
            ++Y          ++V  L L                           D    K+L+  
Sbjct: 438 YKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVLVEI 497

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKP 225
             K G +D  F LL  + +DG  P
Sbjct: 498 NQKEGNMDMVFNLLTEMAKDGLIP 521



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 43/96 (44%)

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             R    +  +G  P    Y  +I G  +  + D+AF F   M +KG  PN   + M+I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              R GR  E +  LVEM+  G  P    ++ + +G
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNG 97



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 63/156 (40%), Gaps = 17/156 (10%)

Query: 55  YNSLLFALCEVKLFHGAYALIR----------------RMIRKGFVPDKRTYAILVNAWC 98
           YN+L+   C ++ F  A AL++                 MI K   P++  Y ++++  C
Sbjct: 371 YNTLIENCCNIE-FKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHC 429

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G + +A +  +EM    F P       LV+ L   G      +++  +++   + D E
Sbjct: 430 RIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAE 489

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
               L+E   K G ++    +   + K GL     T
Sbjct: 490 LSKVLVEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525


>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 780

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 158/357 (44%), Gaps = 38/357 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL-F 60
           W+T+E +K   +SV      ++I  + K GL + AVE F +   F+C+  V  YN +L  
Sbjct: 112 WQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKEFDCRPDVFTYNVILRI 171

Query: 61  ALCEVKLFHGAYALIRRMIR-----------------------------------KGFVP 85
            + E   F  A+A+   M++                                   +G  P
Sbjct: 172 MMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISP 231

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           ++ TY IL++  C  G   +A++   EM   G  P     + L+ G    G +  A +++
Sbjct: 232 NRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELL 291

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
               K GFVL L  ++SLI+ + ++       E+Y ++ K  +  D+  Y ILI  +SKA
Sbjct: 292 RLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKA 351

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G I++A +LL ++   G  P    Y  +IK +  RG  ++      EM      P+   +
Sbjct: 352 GKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTH 411

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           T+LI    R G   +A    +E+ + G +P    F+ + DGL  C   +L E   LL
Sbjct: 412 TILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGL--CKSGELKEARLLL 466



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 151/331 (45%), Gaps = 16/331 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    +S +  T +++I    + G  ++A ++F +  A       + +N+LL   
Sbjct: 219 KMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGF 278

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     A+ L+R   + GFV   R Y+ L++    + +  +A E    M  +   P +
Sbjct: 279 CKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIKPDI 338

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+QGL  AG +E A +++  M  +G   D   +N++I+ +C  G +E    +   
Sbjct: 339 ILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSLQLE 398

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +     D  T+ ILI ++ + G++ +A  +   + + G  P  + +  +I G+ + G+
Sbjct: 399 MSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGE 458

Query: 243 FDDAFCFFSEMKIK---------GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +A     +M++           H  NR   TM+     + G  ++A   L    + G 
Sbjct: 459 LKEARLLLHKMEVGRPASLFLRLAHSGNRSFDTMV-----QSGSILKAYKNLAHFADTGN 513

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           +P    ++++ +G   C + D+   ++LL V
Sbjct: 514 SPDIVSYNVLINGF--CREGDIDGALKLLNV 542



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 122/277 (44%), Gaps = 20/277 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+SL+  L   + +  A+ L   M+++   PD   Y IL+     +GK+ +A + L+ M 
Sbjct: 306 YSSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMP 365

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P     + +++ L   G LE  + +  +M +     D  T   LI ++C++G V 
Sbjct: 366 SKGITPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVR 425

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN------------LVEDG 222
              E++  + K G    V+T+  LI  + K+G + EA  LLH             L   G
Sbjct: 426 KAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKMEVGRPASLFLRLAHSG 485

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
           ++ F +        M + G    A+   +     G+ P+   Y +LI    R G    A 
Sbjct: 486 NRSFDT--------MVQSGSILKAYKNLAHFADTGNSPDIVSYNVLINGFCREGDIDGAL 537

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             L  +   GL+P S  ++ + +GL   G+ + A K+
Sbjct: 538 KLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKL 574



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 120/277 (43%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N S +  T  ++++   K G   +A ++F+  T        + Y  L+  LC+      A
Sbjct: 193 NCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDA 252

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   M   G  PD   +  L++ +C  G+M EA E L+     GF   +RG   L+ G
Sbjct: 253 RKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDG 312

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A     A ++   M+K+    D+  +  LI+ + K+G++E  +++  S+   G+  D
Sbjct: 313 LFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPD 372

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  +I A+   G+++E   L   + E    P    +  +I  M R G    A   F 
Sbjct: 373 TYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFL 432

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           E++  G  P+   +  LI    + G   EA   L +M
Sbjct: 433 EIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 19/273 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    ++GLV  A E+F +     C   V  +N+L+  LC+      A  L+ +M
Sbjct: 410 THTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCKSGELKEARLLLHKM 469

Query: 79  ---------IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
                    +R     + R++  +V     SG + +A + L   +D G +P +   ++L+
Sbjct: 470 EVGRPASLFLRLAHSGN-RSFDTMVQ----SGSILKAYKNLAHFADTGNSPDIVSYNVLI 524

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G    G ++ A +++N +  +G   D  T+N+LI  + + G  E   +++Y+  K    
Sbjct: 525 NGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEAFKLFYA--KDDFR 582

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
              + Y+ L+    +   +  AF L    ++          A  I+  F+ G+ + A   
Sbjct: 583 HSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKK-ISCLDDETANEIEQCFKEGETERALRR 641

Query: 250 FSEMKIKGHPPNRPVYTM-LITMCGRGGRFVEA 281
             E+  +        YT+ LI +C + GRF EA
Sbjct: 642 LIELDTRKDELTLGPYTIWLIGLC-QSGRFHEA 673



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 40/204 (19%)

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
           E+F  +I+ + +    +   +    +   G+  D   + +LI A +K G+ ++A      
Sbjct: 93  ESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGR 152

Query: 218 LVEDGHKP----------------------------------FPSLY--APIIKGMFRRG 241
           + E   +P                                   P+LY    ++ G++++G
Sbjct: 153 MKEFDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKG 212

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           +  DA   F +M  +G  PNR  YT+LI+ +C RG    +A     EM   G  P S   
Sbjct: 213 RTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSP-EDARKLFYEMKASGNYPDSVAH 271

Query: 301 DLVTDGLKNCGKHDLAEKIELLEV 324
           + + DG    G+  + E  ELL +
Sbjct: 272 NALLDGFCKLGR--MVEAFELLRL 293


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V +A ++ +     NC+  +  YN L+  LC V   + A+ L+RR+
Sbjct: 372 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 431

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G +PD+ TY ILV+ +C  G++  A      M+  G  P       L+ GL   G L
Sbjct: 432 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 491

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M+K+G  LD  TF +LI+  CK G+ +    ++ ++ +        T+   
Sbjct: 492 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 551

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +++ G  P    +  +I+G  R G+   +      MK  G 
Sbjct: 552 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 611

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT++I      GR  EA   L  M+  G++P    + ++       G+ D A +
Sbjct: 612 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 671

Query: 319 I 319
           I
Sbjct: 672 I 672



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 3/279 (1%)

Query: 36  AVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           A  VF K +   NC+   + Y+ L+  LCE      A+ L + M+ KG  P  RTY +L+
Sbjct: 248 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 307

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            A C  G   +A + L EM+ K   P V    +L+  L   G +E A  +  KM+K G  
Sbjct: 308 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC 367

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFR 213
             + TFN+LI   CK G V    ++  SV + G C  ++ TY  L+  + +     +AF 
Sbjct: 368 PGIITFNALINGYCKEGWVVSAFQL-LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 426

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  +V++G  P    Y  ++ G  + GQ + AF  F+ M   G  P+   +T LI    
Sbjct: 427 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 486

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + GR  +A   L  M + G++     F  + DG    GK
Sbjct: 487 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 525



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           SL+ A C       A+ +  +M ++    P+  TY+IL++  C +G++ EA +  QEM +
Sbjct: 234 SLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVE 293

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P  R   +L++   + G  + A +M+++M  +  V ++ T+  LI+ +C+ G++E 
Sbjct: 294 KGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEE 353

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  + K GLC  + T+  LI    K G +  AF+LL  + +   KP    Y  +++
Sbjct: 354 ANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 413

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R  +   AF     +   G  P+R  Y +L+    + G+   A N    M   GL P
Sbjct: 414 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 473

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               F  + DGL   G+ + A  I
Sbjct: 474 DGFTFTALIDGLCKLGRLEQANGI 497



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 133/302 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++ K  N   +  T S++I    + G ++ A ++  +     CQ     Y  L+ A C++
Sbjct: 254 KMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDI 313

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A  ++  M  K  VP+  TY IL++  C  GK+ EA    ++M   G  P +   
Sbjct: 314 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF 373

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G++ SA Q+++ M K     ++ T+N L+E +C+  +      +   V  
Sbjct: 374 NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 433

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D  TY IL+    K G ++ AF + +++   G +P    +  +I G+ + G+ + 
Sbjct: 434 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 493

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M  KG   +   +T LI    + G+  +       M E      +  F+   D
Sbjct: 494 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLD 553

Query: 306 GL 307
            L
Sbjct: 554 AL 555



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 152/360 (42%), Gaps = 57/360 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G ++ A  +FN   +   +     + +L+  LC++     A  ++  M
Sbjct: 442 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 501

Query: 79  IRKGFVPDKRTYAILVNAWCSSGK-----------------------------------M 103
           ++KG   D+ T+  L++  C  GK                                   +
Sbjct: 502 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 561

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            EA   L +M   G  P V    +L++G   AG    + +M+ +M + G   ++ T+  +
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C +G VE    + +S+   G+  +  TY +L+ A  KAG +D AF+++  +V++G 
Sbjct: 622 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681

Query: 224 KPFPSLYAPIIKG------------MFRRGQFD---------DAFCFFSEMKIKGHPPNR 262
           +P   +Y+ ++ G            +   G  D         D  C  +E+K K   P  
Sbjct: 682 QPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIK-KCGVPTE 740

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +Y  L+    + GR +EA     +M + GL P      ++    K C   +  E ++L+
Sbjct: 741 DLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLV 800



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 2/308 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +++I+     G+ D A+++ ++     C   V  Y  L+  LC       A  + 
Sbjct: 299 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 358

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R+M++ G  P   T+  L+N +C  G +  A + L  M      P +R  + L++GL   
Sbjct: 359 RKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRV 418

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                A  ++ +++  G + D  T+N L++  CK G++     ++ S+   GL  D  T+
Sbjct: 419 SKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 478

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + K G +++A  +L ++V+ G       +  +I G  + G+  D    F  M  
Sbjct: 479 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVE 538

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                    +   +   G+  +  EA   L +M + GL P      ++ +G  +C   + 
Sbjct: 539 NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG--HCRAGET 596

Query: 316 AEKIELLE 323
           A  +++LE
Sbjct: 597 ALSLKMLE 604



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 38/271 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L ++ +   A+ + RRM+ +GFV     Y  +VNA C +              
Sbjct: 162 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN-------------- 207

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                                G++++A+    K+++ GF LD     SL+   C+  ++ 
Sbjct: 208 ---------------------GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 246

Query: 175 FCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++  + K   C   S TY ILI  + +AG ++EAF+L   +VE G +P    Y  +
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           IK     G  D A     EM  K   PN   YT+LI    R G+  EA     +M + GL
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            P    F+ + +G   C +  +    +LL V
Sbjct: 367 CPGIITFNALINGY--CKEGWVVSAFQLLSV 395



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 114/284 (40%), Gaps = 24/284 (8%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK    S +  T ++II     +G V+ A  +    ++F        Y  L+ A 
Sbjct: 601 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 660

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN------------AWCSSGKMREAQEFL 110
            +      A+ ++  M++ G  P+   Y+ L++            A  S+G + +A+   
Sbjct: 661 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL-DARSLS 719

Query: 111 QEMSD---------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
            E +D         K   P     + LV GL   G +  A Q+   M+K G   D +  +
Sbjct: 720 SEENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD-KAIS 778

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           S+IE  CK+ + + C+E    V         ++Y  +I  +   G + EA +L+ +LV  
Sbjct: 779 SIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVRH 838

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPV 264
                     P I+ + +  + D   C      I+  H   RP+
Sbjct: 839 TGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIKAIEQVHYKERPI 882



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 105/266 (39%), Gaps = 21/266 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  Y L  S  T +++IE   + G    ++++  +     C   V  Y  ++  LC    
Sbjct: 571 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 630

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP------- 120
              A  ++  M   G  P+  TYA+LV A   +G++  A + +  M   G  P       
Sbjct: 631 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 690

Query: 121 ----------PVRGRDLLVQGLLNAGYLESAKQMVNKM---IKQGFVLDLETFNSLIETI 167
                      +  R L   G L+A  L S +   N +   IK+  V   + +N L+  +
Sbjct: 691 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGVPTEDLYNFLVVGL 750

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G +    ++   + K GL  D +   I I    K    D     +  ++++   P  
Sbjct: 751 CKEGRIIEADQLTQDMVKHGLFPDKAISSI-IEHYCKTCKYDNCLEFMKLVLDNKFVPSF 809

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEM 253
           + Y  +I G+   G+  +A    S++
Sbjct: 810 ASYCWVIHGLRNEGRVQEAQKLVSDL 835


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 143/291 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    ++ Y+SL+   C       A  +   M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C   ++ E  E  +EMS +G        ++L+QGL  AG  
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 447

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G   ++ T+N+L++ +CK+G++E  + ++  + +  +   + TY I+
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  NL   G KP    Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            PN   Y  LI    R G    +A  + EM   G    +    LVT+ L +
Sbjct: 568 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 153/334 (45%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A+ +F +      +  V+ Y+SL+  LC    +  A  L+  MI + 
Sbjct: 262 IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 322 INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAK 381

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM   M+ +    D+ T+N+LI+  CK   VE  +E++  + + GL  +  TY ILI  +
Sbjct: 382 QMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGL 441

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
            +AG  D A  +   +V DG  P                                  P++
Sbjct: 442 FQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 501

Query: 230 YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           Y    +I+GM + G+ +D +  F  + +KG  P+   Y  +I+   R G   EA     E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKE 561

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S C++ L+   L++  +   AE I+
Sbjct: 562 MKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 25  EEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           E+  ++GL    +D+AV +F +         ++ ++ LL A+ ++  F    +L  +M  
Sbjct: 50  EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   +  TY+IL+N +C   ++  A   L +M   G+ P +     L+ G  ++  +  
Sbjct: 110 LGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +V++M   G+  +  TFN+LI  +    +    + +   +   G   D+ TY +++ 
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVN 229

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G  D AF LL+ + +   +P   +Y  II G+ +    DDA   F EM+ KG  P
Sbjct: 230 GLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRP 289

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           N   Y+ LI+     GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 348



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 6/279 (2%)

Query: 3   KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K +E  K Y+     S+ P   T S +I  F  H  +D A ++F    + +C   V+ YN
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYN 400

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C+ K       + R M ++G V +  TY IL+     +G    AQE  +EM   
Sbjct: 401 TLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSD 460

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+ GL   G LE A  +   + +      + T+N +IE +CK+G+VE  
Sbjct: 461 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +++ ++   G+  DV  Y  +I    + G  +EA  L   + EDG  P    Y  +I+ 
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             R G  + +     EM+  G   +     ++  M   G
Sbjct: 581 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 619



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     +  AV + ++      Q   + +N+L+  L        A ALI RM
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY ++VN  C  G    A   L +M      P V   + ++ GL    ++
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHM 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M  +G   ++ T++SLI  +C  G       +   + +  +  DV T+  L
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G + EA +L   +V+    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    +  R  E      EM++ GL   +  ++++  GL   G  D+A++
Sbjct: 393 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 452

Query: 319 I 319
           I
Sbjct: 453 I 453



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 128/298 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     A+ + ++  A  CQ  ++ Y  ++  LC+      A+ L+ +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    P    Y  +++  C    M +A    +EM  KG  P V     L+  L N G  
Sbjct: 248 EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    D+ TF++LI+   K G++    ++Y  + K  +   + TY  L
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA ++   +V     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGL 427

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   Y +LI    + G    A     EM   G+ P    ++ + DGL   GK + A
Sbjct: 428 VGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L +  L+   L+ A  +  +M+K      +  F+ L+  I K  + +  + +   + 
Sbjct: 49  REKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+  +  TY ILI    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 109 NLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRIS 168

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M + G+ PN   +  LI       +  EA   +  M   G  P    + +V 
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVV 228

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 229 NGLCKRGDTDLA 240


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V +A ++ +     NC+  +  YN L+  LC V   + A+ L+RR+
Sbjct: 306 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 365

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G +PD+ TY ILV+ +C  G++  A      M+  G  P       L+ GL   G L
Sbjct: 366 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 425

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M+K+G  LD  TF +LI+  CK G+ +    ++ ++ +        T+   
Sbjct: 426 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 485

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +++ G  P    +  +I+G  R G+   +      MK  G 
Sbjct: 486 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 545

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT++I      GR  EA   L  M+  G++P    + ++       G+ D A +
Sbjct: 546 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 605

Query: 319 I 319
           I
Sbjct: 606 I 606



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 132/279 (47%), Gaps = 3/279 (1%)

Query: 36  AVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           A  VF K +   +C+   + Y+ L+  LCE      A+ L + M+ KG  P  RTY +L+
Sbjct: 182 AFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 241

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            A C  G   +A + L EM+ K   P V    +L+  L   G +E A  +  KM+K G  
Sbjct: 242 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC 301

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFR 213
             + TFN+LI   CK G V    ++  SV + G C  ++ TY  L+  + +     +AF 
Sbjct: 302 PGIITFNALINGYCKEGWVVSAFQL-LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 360

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  +V++G  P    Y  ++ G  + GQ + AF  F+ M   G  P+   +T LI    
Sbjct: 361 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 420

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + GR  +A   L  M + G++     F  + DG    GK
Sbjct: 421 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 459



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           SL+ A C       A+ +  +M ++    P+  TY+IL++  C +G++ EA +  QEM +
Sbjct: 168 SLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVE 227

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P  R   +L++   + G  + A +M+++M  +  V ++ T+  LI+ +C+ G++E 
Sbjct: 228 KGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEE 287

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  + K GLC  + T+  LI    K G +  AF+LL  + +   KP    Y  +++
Sbjct: 288 ANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 347

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R  +   AF     +   G  P+R  Y +L+    + G+   A N    M   GL P
Sbjct: 348 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 407

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               F  + DGL   G+ + A  I
Sbjct: 408 DGFTFTALIDGLCKLGRLEQANGI 431



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 128/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    + G ++ A ++  +     CQ     Y  L+ A C++ +   A  ++  M
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K  VP+  TY IL++  C  GK+ EA    ++M   G  P +   + L+ G    G++
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA Q+++ M K     ++ T+N L+E +C+  +      +   V   GL  D  TY IL
Sbjct: 321 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNIL 380

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G ++ AF + +++   G +P    +  +I G+ + G+ + A      M  KG 
Sbjct: 381 VDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 440

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   +T LI    + G+  +       M E      +  F+   D L
Sbjct: 441 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDAL 489



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G ++ A  +FN   +   +     + +L+  LC++     A  ++  M
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 435

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++KG   D+ T+  L++  C  GK ++     + M +          +  +  L     L
Sbjct: 436 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 495

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M+ KM+K G V  + T   LIE  C++GE    ++M   + + G   +V TY I+
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++EA  +L ++   G  P    YA ++K   + G+ D AF   S M   G 
Sbjct: 556 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615

Query: 259 PPNRPVYTMLIT 270
            PN  +Y+ L++
Sbjct: 616 QPNSHIYSALLS 627



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 2/308 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +++I+     G+ D A+++ ++     C   V  Y  L+  LC       A  + 
Sbjct: 233 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 292

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R+M++ G  P   T+  L+N +C  G +  A + L  M      P +R  + L++GL   
Sbjct: 293 RKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRV 352

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                A  ++ +++  G + D  T+N L++  CK G++     ++ S+   GL  D  T+
Sbjct: 353 SKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 412

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + K G +++A  +L ++V+ G       +  +I G  + G+  D    F  M  
Sbjct: 413 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVE 472

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                    +   +   G+  +  EA   L +M + GL P      ++ +G  +C   + 
Sbjct: 473 NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG--HCRAGET 530

Query: 316 AEKIELLE 323
           A  +++LE
Sbjct: 531 ALSLKMLE 538



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 36/253 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L ++ +   A+ + RRM+ +GFV     Y  +VNA C +              
Sbjct: 96  YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN-------------- 141

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                                G++++A+    K+++ GF LD     SL+   C+  ++ 
Sbjct: 142 ---------------------GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 180

Query: 175 FCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++  + K   C   S TY ILI  + +AG ++EAF+L   +VE G +P    Y  +
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           IK     G  D A     EM  K   PN   YT+LI    R G+  EA     +M + GL
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 294 TPISRCFDLVTDG 306
            P    F+ + +G
Sbjct: 301 CPGIITFNALING 313



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 135/352 (38%), Gaps = 73/352 (20%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S+   T + +I+   K G   +   +F       C      +N  L AL +   
Sbjct: 435 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 494

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A A++ +M++ G VP   T+ IL+   C +G+   + + L+ M   G +P V    +
Sbjct: 495 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 554

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL N G +E A                       ETI             +S+   G
Sbjct: 555 IINGLCNNGRVEEA-----------------------ETI------------LFSMSSFG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG----------- 236
           +  +  TY +L+ A  KAG +D AF+++  +V++G +P   +Y+ ++ G           
Sbjct: 580 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 639

Query: 237 --------------------------MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
                                     +FR    D A     E+K K   P   +Y  L+ 
Sbjct: 640 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIK-KCGVPTEDLYNFLVV 698

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
              + GR +EA     +M + GL P      ++    K C   +  E ++L+
Sbjct: 699 GLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLV 750



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 4/283 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  Y L  S  T +++IE   + G    ++++  +     C   V  Y  ++  LC    
Sbjct: 505 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 564

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   G  P+  TYA+LV A   +G++  A + +  M   G  P       
Sbjct: 565 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 624

Query: 128 LVQG--LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           L+ G  L N      A      +  +    +    N L   + +  +V+  +++   + K
Sbjct: 625 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKK 684

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +   Y  L+  + K G I EA +L  ++V+ G  P  ++ + II+   +  ++D+
Sbjct: 685 CGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDN 742

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              F   +      P+   Y  +I      GR  EA   + ++
Sbjct: 743 CLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 785



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 40/300 (13%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK    S +  T ++II     +G V+ A  +    ++F        Y  L+ A 
Sbjct: 535 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 594

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN------------AWCSSGKMREAQEFL 110
            +      A+ ++  M++ G  P+   Y+ L++            A  S+G + +A+   
Sbjct: 595 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL-DARSLS 653

Query: 111 QEMSDKG-----------FNPPVRGRD--------------LLVQGLLNAGYLESAKQMV 145
            E +D              +  ++ RD               LV GL   G +  A Q+ 
Sbjct: 654 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 713

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
             M+K G   D +  +S+IE  CK+ + + C+E    V         ++Y  +I  +   
Sbjct: 714 QDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 772

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPV 264
           G + EA +L+ +LV            P I+ + +  + D   C      I+  H   RP+
Sbjct: 773 GRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIKAIEQVHYKERPI 832


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 146/346 (42%), Gaps = 37/346 (10%)

Query: 8   MKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +K  N  + P   T + +I    K G V  A  + +    ++       Y SL+   C  
Sbjct: 191 IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+A+  RM++ G  P+  TY+ L+N  CS G++ EA + L+EM  KG  P V   
Sbjct: 251 HNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTY 310

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            + +  L +AG    A +++ KM K+G V +++TF +LI  + + G+ E  + +Y+ +  
Sbjct: 311 TIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA 370

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK---------- 235
            GL     TY  LI  +   G  + AF +   ++  G  P    Y  IIK          
Sbjct: 371 DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430

Query: 236 -------------------------GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
                                    G  ++G  ++A      MK  G  P+   YT LI+
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              RGG+   A +    M E G++P    +  + DG  N  K D A
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDA 536



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 128/289 (44%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G    AVE+  K     C   +  + +L+  L     F  A  L  +M+  G VP   TY
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N  C  G+   A    + M   G  P  +  + +++     G ++ A  + +KM+K
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   ++ T+N+LI   CK G +   + +   +   GL  D  TY  LI   S+ G ++ 
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L + ++E G  P    Y  II G F   + DDA   F +M   G+ P+   Y ++I+
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +     EA N+  +M + GL P    +    DGL   G+  LA KI
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 133/305 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT + +I    + G  + A+ +++K  A       + YN+L+  LC    F  A+ + + 
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G +P  +TY  ++  +C  G +++A     +M   G +P V   + L+ G    G 
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L +A +++  M   G   D  T+  LI    + G++E    ++Y + + G+  +  TY  
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I        +D+A  L   +VE G+ P    Y  +I G  +     +A  F  +M  +G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   YT  I    R GR   A     EM +    P    +  +  GL   G+ + AE
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 318 KIELL 322
              LL
Sbjct: 643 MYNLL 647



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 12/287 (4%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S QT + II+ F   G +  A+ +F+K         V+ YN+L++  C+    + A  L+
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M   G  PD  TY  L++ +   GK+  A      M + G +P       ++ G  N 
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYYSVCKLGLCAD 191
             ++ A  +  KM++ G +   +T+N +I    K+  +     FC +M     K GL  +
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM----VKQGLLPN 586

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA--FCF 249
           V TY   I  + + G    AF++ H + +  + P    Y+ +I G+ + G+ +DA  +  
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 250 FSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTP 295
            + +   G  PN   YT L+  +CG  GR  EA   +V M + GL P
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGE-GRCYEADQLVVSMQKKGLQP 692



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 2/319 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+   Y+   +  + + ++ + GK  +VD A +++ K      +  +L +N+++  LC+ 
Sbjct: 156 EINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKK 215

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  + R    P+  TY  L+   C +  +  A      M   G +P     
Sbjct: 216 GRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTY 275

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL + G LE A  M+ +M+++G    + T+   + ++C +G     VE+   + K
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   ++ T+  LI  +S+ G  + A  L H ++ DG  P    Y  +I  +   G+F+ 
Sbjct: 336 RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFET 395

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF  F  M   G  P+   Y  +I      G   +A     +M + G +P    ++ +  
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455

Query: 306 GLKNCGKHDLAEKIELLEV 324
           G   C + +L   + LLE+
Sbjct: 456 GY--CKQGNLNNAMRLLEI 472



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 119/269 (44%), Gaps = 6/269 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK +E     NL  S QT +++I  F K   +  A     K         V+ Y S +  
Sbjct: 541 WKMVE---SGNLP-SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF--LQEMSDKGFN 119
           LC       A+ +   M ++ + P+  TY+ L+   C  G+  +A+ +  L  ++  G  
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V     LV+GL   G    A Q+V  M K+G     E + +L+   CK+ +VE  + +
Sbjct: 657 PNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNI 716

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +YS+  LG    +S YK LI A+ K   I+EA  +   ++E        ++  ++ G+ +
Sbjct: 717 FYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLK 776

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            G+ D        M+ +    N   Y ML
Sbjct: 777 EGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQ 130
           +++ R++R + F P      +++ +  + G+++   +FL E++ K  F   +     L+ 
Sbjct: 116 SMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLI 175

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L     ++ A+ M  KM+  G    L TFN++I  +CK G V+    +   + +     
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI    +   +D AF +   +V+DG  P    Y+ +I G+   G+ ++A    
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDML 295

Query: 251 SEMKIKGHPPNRPVYTM-LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            EM  KG  P    YT+ L+++C  G    EA   L +M + G  P  + F  +  GL  
Sbjct: 296 EEMVQKGIEPTVYTYTIPLVSLCDAGCS-SEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 310 CGKHDLA 316
            GK ++A
Sbjct: 355 DGKFEIA 361



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 116/264 (43%), Gaps = 2/264 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +S +  T + II+ +     VD+A+ +F K            YN ++    +   
Sbjct: 508 MMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS 567

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A     +M+++G +P+  TY   ++  C +G+   A +   EM  + + P +     
Sbjct: 568 ISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSS 627

Query: 128 LVQGLLNAGYLESAK--QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           L+ GL   G  E A+   ++ ++   G   +++T+ +L++ +C  G      ++  S+ K
Sbjct: 628 LIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQK 687

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL      Y+ L+    K   ++ A  + +++   G +   S Y  +I  + +    ++
Sbjct: 688 KGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEE 747

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
           A C F  M  K    +  V+T+L+
Sbjct: 748 AQCIFQTMLEKHWNSDEVVWTVLL 771



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAFNCQQCVLLYNSL 58
           +K    M+  N   +  T S +I    + G  ++A E++N   + T + C+  V  Y +L
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTL 665

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC     + A  L+  M +KG  P +  Y  L+   C + K+  A      M   GF
Sbjct: 666 VKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGF 725

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
              +     L+  L    ++E A+ +   M+++ +  D   +  L++ + K GE + C++
Sbjct: 726 QLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLK 785

Query: 179 MYYSVCKLGLCADVSTYKILIPAVS 203
           + + +       +  TY +L   +S
Sbjct: 786 LLHVMESRNCTLNFQTYVMLARELS 810


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 156/354 (44%), Gaps = 39/354 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +P+T ++I E +   G    AV+VF     F C Q +  +N++L  LC+ K 
Sbjct: 127 MRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKR 186

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L + + +  F  D  +Y ++VN WC   +  +A E L+EM  +G  P +   + 
Sbjct: 187 VEMAYNLFK-VFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNT 245

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++G   AG +  A     +M K+   +D+ T+ ++I     +GE++   +++ ++ K G
Sbjct: 246 MLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKG 305

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   V+TY   I  + K   +D A  +   +V  G+ P    Y  +I+G+  RG+ + A 
Sbjct: 306 VLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAM 365

Query: 248 CFFSEMKIKGHPPNRPVYTMLIT-MCGRG-----------------------------GR 277
            F   MK  G  PN   Y ++I   C  G                               
Sbjct: 366 EFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAM 425

Query: 278 FVE--------AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           FV         A N L+EM + G  P    F+ V +GL   G    A++I  L+
Sbjct: 426 FVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKEILRLQ 479



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 78/166 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     MK  +  +   T + +I  FG  G +  A +VF+          V  YN+ +  
Sbjct: 260 WDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQV 319

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  +   M+ KG+VP+  TY +++   C  G+M  A EF+  M D G  P 
Sbjct: 320 LCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPN 379

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           V+  +L+++   + G ++ A  +  KM     + +L+T+N LI  +
Sbjct: 380 VQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAM 425



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 44/283 (15%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPV--- 122
           +L+ RM      P  +T+AI+   + S+GK   A +    M   G       FN  +   
Sbjct: 122 SLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVL 181

Query: 123 ----------------RGR--------DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                           +G+        +++V G         A +M+ +M+K+G   +L 
Sbjct: 182 CKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLT 241

Query: 159 TFNSLIETICKSGEV----EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           ++N++++   ++G++    +F +EM    C++    DV TY  +I     AG I  A ++
Sbjct: 242 SYNTMLKGYFRAGQINEAWDFFLEMKKRDCEI----DVITYTTVIHGFGVAGEIKRARKV 297

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCG 273
              +V+ G  P  + Y   I+ + ++   D+A   F EM +KG+ PN   Y ++I  +C 
Sbjct: 298 FDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCH 357

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           R G    A  ++  M + G  P  + ++LV     + G+ D A
Sbjct: 358 R-GEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKA 399



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 6/227 (2%)

Query: 100 SGKMREA---QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           S ++R++   +  +  M      P  +   ++ +   +AG    A ++   M + G   D
Sbjct: 111 SARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQD 170

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L++FN++++ +CKS  VE    + + V K    AD  +Y +++         ++A  +L 
Sbjct: 171 LQSFNTILDVLCKSKRVEMAYNL-FKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLK 229

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +V+ G  P  + Y  ++KG FR GQ ++A+ FF EMK +    +   YT +I   G  G
Sbjct: 230 EMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAG 289

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               A      M + G+ P    ++     L  C K ++   I + E
Sbjct: 290 EIKRARKVFDTMVKKGVLPSVATYNAFIQVL--CKKDNVDNAIVIFE 334


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V +A ++ +     NC+  +  YN L+  LC V   + A+ L+RR+
Sbjct: 349 TFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRV 408

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G +PD+ TY ILV+ +C  G++  A      M+  G  P       L+ GL   G L
Sbjct: 409 VDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRL 468

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M+K+G  LD  TF +LI+  CK G+ +    ++ ++ +        T+   
Sbjct: 469 EQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCF 528

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   ++EA  +L  +++ G  P    +  +I+G  R G+   +      MK  G 
Sbjct: 529 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 588

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT++I      GR  EA   L  M+  G++P    + ++       G+ D A +
Sbjct: 589 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 648

Query: 319 I 319
           I
Sbjct: 649 I 649



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 132/279 (47%), Gaps = 3/279 (1%)

Query: 36  AVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           A  VF K +   NC+   + Y+ L+  LCE      A+ L + M+ KG  P  RTY +L+
Sbjct: 225 AFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLI 284

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            A C  G   +A + L EM+ K   P V    +L+  L   G +E A  +  KM+K G  
Sbjct: 285 KAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLC 344

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFR 213
             + TFN+LI   CK G V    ++  SV + G C  ++ TY  L+  + +     +AF 
Sbjct: 345 PGIITFNALINGYCKEGWVVSAFQL-LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL 403

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  +V++G  P    Y  ++ G  + GQ + AF  F+ M   G  P+   +T LI    
Sbjct: 404 LLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLC 463

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + GR  +A   L  M + G++     F  + DG    GK
Sbjct: 464 KLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGK 502



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 129/264 (48%), Gaps = 1/264 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           SL+ A C       A+ +  +M ++    P+  TY+IL++  C +G++ EA +  QEM +
Sbjct: 211 SLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVE 270

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P  R   +L++   + G  + A +M+++M  +  V ++ T+  LI+ +C+ G++E 
Sbjct: 271 KGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEE 330

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  + K GLC  + T+  LI    K G +  AF+LL  + +   KP    Y  +++
Sbjct: 331 ANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELME 390

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R  +   AF     +   G  P+R  Y +L+    + G+   A N    M   GL P
Sbjct: 391 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 450

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               F  + DGL   G+ + A  I
Sbjct: 451 DGFTFTALIDGLCKLGRLEQANGI 474



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 133/302 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++ K  N   +  T S++I    + G ++ A ++  +     CQ     Y  L+ A C++
Sbjct: 231 KMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDI 290

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A  ++  M  K  VP+  TY IL++  C  GK+ EA    ++M   G  P +   
Sbjct: 291 GMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITF 350

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G++ SA Q+++ M K     ++ T+N L+E +C+  +      +   V  
Sbjct: 351 NALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 410

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D  TY IL+    K G ++ AF + +++   G +P    +  +I G+ + G+ + 
Sbjct: 411 NGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQ 470

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M  KG   +   +T LI    + G+  +       M E      +  F+   D
Sbjct: 471 ANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLD 530

Query: 306 GL 307
            L
Sbjct: 531 AL 532



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 118/252 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G ++ A  +FN   +   +     + +L+  LC++     A  ++  M
Sbjct: 419 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 478

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++KG   D+ T+  L++  C  GK ++     + M +          +  +  L     L
Sbjct: 479 VKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKL 538

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M+ KM+K G V  + T   LIE  C++GE    ++M   + + G   +V TY I+
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++EA  +L ++   G  P    YA ++K   + G+ D AF   S M   G 
Sbjct: 599 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658

Query: 259 PPNRPVYTMLIT 270
            PN  +Y+ L++
Sbjct: 659 QPNSHIYSALLS 670



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 137/308 (44%), Gaps = 2/308 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +++I+     G+ D A+++ ++     C   V  Y  L+  LC       A  + 
Sbjct: 276 STRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVF 335

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R+M++ G  P   T+  L+N +C  G +  A + L  M      P +R  + L++GL   
Sbjct: 336 RKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRV 395

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                A  ++ +++  G + D  T+N L++  CK G++     ++ S+   GL  D  T+
Sbjct: 396 SKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 455

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + K G +++A  +L ++V+ G       +  +I G  + G+  D    F  M  
Sbjct: 456 TALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVE 515

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                    +   +   G+  +  EA   L +M + GL P      ++ +G  +C   + 
Sbjct: 516 NRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEG--HCRAGET 573

Query: 316 AEKIELLE 323
           A  +++LE
Sbjct: 574 ALSLKMLE 581



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 110/253 (43%), Gaps = 36/253 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L ++ +   A+ + RRM+ +GFV     Y  +VNA C +              
Sbjct: 139 YSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKN-------------- 184

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                                G++++A+    K+++ GF LD     SL+   C+  ++ 
Sbjct: 185 ---------------------GFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 223

Query: 175 FCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++  + K   C   S TY ILI  + +AG ++EAF+L   +VE G +P    Y  +
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           IK     G  D A     EM  K   PN   YT+LI    R G+  EA     +M + GL
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 294 TPISRCFDLVTDG 306
            P    F+ + +G
Sbjct: 344 CPGIITFNALING 356



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 135/352 (38%), Gaps = 73/352 (20%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S+   T + +I+   K G   +   +F       C      +N  L AL +   
Sbjct: 478 MVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYK 537

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A A++ +M++ G VP   T+ IL+   C +G+   + + L+ M   G +P V    +
Sbjct: 538 LNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTI 597

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL N G +E A                       ETI             +S+   G
Sbjct: 598 IINGLCNNGRVEEA-----------------------ETI------------LFSMSSFG 622

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG----------- 236
           +  +  TY +L+ A  KAG +D AF+++  +V++G +P   +Y+ ++ G           
Sbjct: 623 VSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGAR 682

Query: 237 --------------------------MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
                                     +FR    D A     E+K  G  P   +Y  L+ 
Sbjct: 683 ALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCG-VPTEDLYNFLVV 741

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
              + GR +EA     +M + GL P      ++    K C   +  E ++L+
Sbjct: 742 GLCKEGRIIEADQLTQDMVKHGLFPDKAISSIIEHYCKTCKYDNCLEFMKLV 793



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 4/283 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  Y L  S  T +++IE   + G    ++++  +     C   V  Y  ++  LC    
Sbjct: 548 MMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGR 607

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M   G  P+  TYA+LV A   +G++  A + +  M   G  P       
Sbjct: 608 VEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSA 667

Query: 128 LVQG--LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           L+ G  L N      A      +  +    +    N L   + +  +V+  +++   + K
Sbjct: 668 LLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKK 727

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +   Y  L+  + K G I EA +L  ++V+ G  P  ++ + II+   +  ++D+
Sbjct: 728 CGVPTE-DLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYDN 785

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              F   +      P+   Y  +I      GR  EA   + ++
Sbjct: 786 CLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDL 828



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 116/300 (38%), Gaps = 40/300 (13%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK    S +  T ++II     +G V+ A  +    ++F        Y  L+ A 
Sbjct: 578 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 637

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN------------AWCSSGKMREAQEFL 110
            +      A+ ++  M++ G  P+   Y+ L++            A  S+G + +A+   
Sbjct: 638 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDL-DARSLS 696

Query: 111 QEMSDKG-----------FNPPVRGRD--------------LLVQGLLNAGYLESAKQMV 145
            E +D              +  ++ RD               LV GL   G +  A Q+ 
Sbjct: 697 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 756

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
             M+K G   D +  +S+IE  CK+ + + C+E    V         ++Y  +I  +   
Sbjct: 757 QDMVKHGLFPD-KAISSIIEHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 815

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPV 264
           G + EA +L+ +LV            P I+ + +  + D   C      I+  H   RP+
Sbjct: 816 GRVQEAQKLVSDLVRHTGIEEEVEVTPSIEFLMKEEEDDPDKCLKLIKAIEQVHYKERPI 875


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 146/346 (42%), Gaps = 37/346 (10%)

Query: 8   MKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +K  N  + P   T + +I    K G V  A  + +    ++       Y SL+   C  
Sbjct: 191 IKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRN 250

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+A+  RM++ G  P+  TY+ L+N  CS G++ EA + L+EM  KG  P V   
Sbjct: 251 HNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTY 310

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            + +  L +AG    A +++ KM K+G V +++TF +LI  + + G+ E  + +Y+ +  
Sbjct: 311 TIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLA 370

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK---------- 235
            GL     TY  LI  +   G  + AF +   ++  G  P    Y  IIK          
Sbjct: 371 DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430

Query: 236 -------------------------GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
                                    G  ++G  ++A      MK  G  P+   YT LI+
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELIS 490

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              RGG+   A +    M E G++P    +  + DG  N  K D A
Sbjct: 491 GFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDA 536



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 128/289 (44%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G    AVE+  K     C   +  + +L+  L     F  A  L  +M+  G VP   TY
Sbjct: 321 GCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTY 380

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N  C  G+   A    + M   G  P  +  + +++     G ++ A  + +KM+K
Sbjct: 381 NALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLK 440

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   ++ T+N+LI   CK G +   + +   +   GL  D  TY  LI   S+ G ++ 
Sbjct: 441 AGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEH 500

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L + ++E G  P    Y  II G F   + DDA   F +M   G+ P+   Y ++I+
Sbjct: 501 ATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMIS 560

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +     EA N+  +M + GL P    +    DGL   G+  LA KI
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 133/305 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT + +I    + G  + A+ +++K  A       + YN+L+  LC    F  A+ + + 
Sbjct: 343 QTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKW 402

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G +P  +TY  ++  +C  G +++A     +M   G +P V   + L+ G    G 
Sbjct: 403 MLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGN 462

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L +A +++  M   G   D  T+  LI    + G++E    ++Y + + G+  +  TY  
Sbjct: 463 LNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTA 522

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I        +D+A  L   +VE G+ P    Y  +I G  +     +A  F  +M  +G
Sbjct: 523 IIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQG 582

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   YT  I    R GR   A     EM +    P    +  +  GL   G+ + AE
Sbjct: 583 LLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAE 642

Query: 318 KIELL 322
              LL
Sbjct: 643 MYNLL 647



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%), Gaps = 12/287 (4%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S QT + II+ F   G +  A+ +F+K         V+ YN+L++  C+    + A  L+
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M   G  PD  TY  L++ +   GK+  A      M + G +P       ++ G  N 
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNL 530

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYYSVCKLGLCAD 191
             ++ A  +  KM++ G +   +T+N +I    K+  +     FC +M     K GL  +
Sbjct: 531 AKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKM----VKQGLLPN 586

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA--FCF 249
           V TY   I  + + G    AF++ H + +  + P    Y+ +I G+ + G+ +DA  +  
Sbjct: 587 VITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNL 646

Query: 250 FSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTP 295
            + +   G  PN   YT L+  +CG  GR  EA   +V M + GL P
Sbjct: 647 LARLTHYGCEPNVDTYTTLVKGLCGE-GRCYEADQLVVSMQKKGLQP 692



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 2/319 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+   Y+   +  + + ++ + GK  +VD A +++ K      +  +L +N+++  LC+ 
Sbjct: 156 EINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKK 215

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  + R    P+  TY  L+   C +  +  A      M   G +P     
Sbjct: 216 GRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTY 275

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL + G LE A  M+ +M+++G    + T+   + ++C +G     VE+   + K
Sbjct: 276 STLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKK 335

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   ++ T+  LI  +S+ G  + A  L H ++ DG  P    Y  +I  +   G+F+ 
Sbjct: 336 RGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFET 395

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF  F  M   G  P+   Y  +I      G   +A     +M + G +P    ++ +  
Sbjct: 396 AFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIY 455

Query: 306 GLKNCGKHDLAEKIELLEV 324
           G   C + +L   + LLE+
Sbjct: 456 GY--CKQGNLNNAMRLLEI 472



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 6/269 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK +E     NL  S QT +++I  F K   +  A     K         V+ Y S +  
Sbjct: 541 WKMVE---SGNLP-SSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDG 596

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF--LQEMSDKGFN 119
           LC       A+ +   M ++ + P+  TY+ L+   C  G+  +A+ +  L  ++  G  
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCE 656

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V     LV+GL   G    A Q+V  M K+G     E + +L+   CK+ +VE  + +
Sbjct: 657 PNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNI 716

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +YS+  LG    +S YK LI A+ K   I+EA  +   ++E         +  ++ G+ +
Sbjct: 717 FYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLK 776

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            G+ D        M+ +    N   Y ML
Sbjct: 777 EGETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 116/247 (46%), Gaps = 4/247 (1%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQ 130
           +++ R++R + F P      +++ +  + G+++   +FL E++ K  F   +     L+ 
Sbjct: 116 SMLNRLVRDRLFAPADHVRILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLI 175

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L     ++ A+ M  KM+  G    L TFN++I  +CK G V+    +   + +     
Sbjct: 176 QLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYP 235

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI    +   +D AF +   +V+DG  P    Y+ +I G+   G+ ++A    
Sbjct: 236 NAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDML 295

Query: 251 SEMKIKGHPPNRPVYTM-LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            EM  KG  P    YT+ L+++C  G    EA   L +M + G  P  + F  +  GL  
Sbjct: 296 EEMVQKGIEPTVYTYTIPLVSLCDAGCS-SEAVELLGKMKKRGCVPNIQTFTALISGLSR 354

Query: 310 CGKHDLA 316
            GK ++A
Sbjct: 355 DGKFEIA 361



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 4/205 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAFNCQQCVLLYNSL 58
           +K    M+  N   +  T S +I    + G  ++A E++N   + T + C+  V  Y +L
Sbjct: 607 FKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTL 665

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC     + A  L+  M +KG  P +  Y  L+   C + K+  A      M   GF
Sbjct: 666 VKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGF 725

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
              +     L+  L    ++E A+ +   M+++ +  D   +  L++ + K GE + C++
Sbjct: 726 QLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLK 785

Query: 179 MYYSVCKLGLCADVSTYKILIPAVS 203
           + + +       +  TY +L   +S
Sbjct: 786 LLHVMESRNCTLNFQTYVMLARELS 810


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 127/265 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNS++  LC+      A  ++R MI +G VPD   Y  L++ +C  G ++ A +   EM 
Sbjct: 48  YNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEME 107

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +   P       ++ GL   G +  A ++ NKM  +G   D  T+ +LI+  CKSGE+E
Sbjct: 108 KQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEME 167

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + + GL  +V TY  L   + K G +D A  LLH +   G +     Y  ++
Sbjct: 168 KAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G    A     EM++ G  P+   +T L+    + G  V+A   L EM + GL 
Sbjct: 228 NGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    F+++ +G    G  +  E++
Sbjct: 288 PTVITFNVLMNGFCMSGMLEDGERL 312



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 130/251 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + +   K G VD A E+ ++      Q  +  YNSL+  LC+      A  L+  M
Sbjct: 187 TYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  T+  L++A+C +G+M +A E L+EM D+G  P V   ++L+ G   +G L
Sbjct: 247 EVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGML 306

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+++G + +  T+NSL++  C    +    E+Y  +C  G+  D +TY IL
Sbjct: 307 EDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNIL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   + E G     S Y  IIKG F++ +  +A   F EM+ +G 
Sbjct: 367 IKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGM 426

Query: 259 PPNRPVYTMLI 269
             +  +Y + +
Sbjct: 427 AADAEIYNLFV 437



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 143/309 (46%), Gaps = 6/309 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P T+  + +I+ F K G +  A ++F++          + Y +++  LC      
Sbjct: 73  NQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMM 132

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +  +M  +G  PD+ TY  L++ +C SG+M +A     +M   G  P V     L 
Sbjct: 133 EADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALA 192

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G +++A +++++M  +G  L++ T+NSL+  +CKSG +   V++   +   G+ 
Sbjct: 193 DGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMY 252

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  T+  L+ A  K G + +A  LL  +++ G +P    +  ++ G    G  +D    
Sbjct: 253 PDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERL 312

Query: 250 FSEMKIKGHPPNRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            + M  KG  PN   Y  L+   C R         Y   M   G+ P S  ++++  G  
Sbjct: 313 LAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIY-KGMCARGVMPDSNTYNILIKG-- 369

Query: 309 NCGKHDLAE 317
           +C   ++ E
Sbjct: 370 HCKARNMKE 378



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 134/299 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K I+ M+   L  +  T + II    K G VD+A  V  +          ++Y +L+   
Sbjct: 31  KLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGF 90

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     AY L   M ++  VPD   Y  ++   C  GKM EA +   +M  +G  P  
Sbjct: 91  CKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDE 150

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G   +G +E A  + N+M++ G   ++ T+ +L + +CK G+V+   E+ + 
Sbjct: 151 VTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHE 210

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C  GL  ++ TY  L+  + K+G I +A +L+  +   G  P    +  ++    + G+
Sbjct: 211 MCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGE 270

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
              A     EM  +G  P    + +L+      G   +    L  M E G+ P +  ++
Sbjct: 271 MVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYN 329



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 122/243 (50%), Gaps = 2/243 (0%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  PD  +Y+ ++N +C  G++++  + +QEM  KG  P +   + ++  L  +G ++ 
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A++++ +MI QG V D   + +LI+  CK G ++   +++  + K  +  D   Y  +I 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + + G + EA ++ + +   G +P    Y  +I G  + G+ + AF   ++M   G  P
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           N   YT L     + G+   A   L EM   GL      ++ + +GL  C   ++ + ++
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGL--CKSGNIRQAVK 241

Query: 321 LLE 323
           L+E
Sbjct: 242 LME 244



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+   +     T + +++ + K G +  A E+  +      Q  V+ +N L+   
Sbjct: 241 KLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGF 300

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C   +      L+  M+ KG +P+  TY  L+  +C    MR   E  + M  +G  P  
Sbjct: 301 CMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDS 360

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++G   A  ++ A  +  +M ++GF L   ++NS+I+   K  ++    E++  
Sbjct: 361 NTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEE 420

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           + + G+ AD   Y + +      G ++ A  L    +E+
Sbjct: 421 MRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIEN 459


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 37/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+ +     S+II+   K G +DNA  +FN+      +  ++ YN+L+   C    
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L+R MI++   P+  T+++L++++   GK+REA + L+EM  +G  P     + 
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      LE A QMV+ MI +G   D+ TFN LI   CK+  ++  +E++  +   G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP---------------------- 225
           + A+  TY  L+    ++G ++ A +L   +V    +P                      
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKAL 493

Query: 226 -------------FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                           +Y  II GM    + DDA+  F  + +KG   +   Y ++I+  
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISEL 553

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            R     +A     +MTE G  P    ++++     + G  D     EL+E
Sbjct: 554 CRKDSLSKADILFRKMTEEGHAPDELTYNILIRA--HLGDDDATTAAELIE 602



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 134/280 (47%), Gaps = 2/280 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S++I+ F K G +  A ++  +          + YNSL+   C+      A 
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  MI KG  PD  T+ IL+N +C + ++ +  E  +EMS +G        + LVQG 
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G LE AK++  +M+ +    D+ ++  L++ +C +GE+E  +E++  + K  +  D+
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDI 508

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y I+I  +  A  +D+A+ L  +L   G K     Y  +I  + R+     A   F +
Sbjct: 509 GIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRK 568

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           M  +GH P+   Y +LI           AA  + EM   G
Sbjct: 569 MTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 138/287 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A+E+ ++      +  ++  N+L+  LC       A  LI RM+  GF P++ TY  
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N  C SG+   A E L++M ++          +++ GL   G L++A  + N+M  +G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D+ T+N+LI   C +G  +   ++   + K  +  +V T+ +LI +  K G + EA 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +LL  +++ G  P    Y  +I G  +  + ++A      M  KG  P+   + +LI   
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +  R  +      EM+  G+   +  ++ +  G    GK ++A+K+
Sbjct: 414 CKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 129/262 (49%), Gaps = 2/262 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A++ + ++++ G+ PD   +  L+N  C   ++ EA E +  M + G  P +
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV GL   G +  A  ++++M++ GF  +  T+  ++  +CKSG+    +E+   
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRK 253

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  D   Y I+I  + K G +D AF L + +   G K     Y  +I G    G+
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGR 313

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      +M  +   PN   +++LI    + G+  EA   L EM + G+ P +  ++ 
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 303 VTDGLKNCGKHDLAEKIELLEV 324
           + DG   C ++ L E I+++++
Sbjct: 374 LIDGF--CKENRLEEAIQMVDL 393



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 121/263 (46%), Gaps = 2/263 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T++   +I+ F K   ++ A+++ +   +  C   ++ +N L+   C+        
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R M  +G + +  TY  LV  +C SGK+  A++  QEM  +   P +    +L+ GL
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G LE A ++  K+ K    LD+  +  +I  +C + +V+   +++ S+   G+  D 
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y I+I  + +   + +A  L   + E+GH P    Y  +I+          A     E
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEE 603

Query: 253 MKIKGHPPNRPVYTMLITMCGRG 275
           MK  G P +     M+I M   G
Sbjct: 604 MKSSGFPADVSTVKMVINMLSSG 626



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 136/303 (44%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++     +G V +AV + ++      Q   + Y  +L  +C+      A  L+R+M
Sbjct: 195 TLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    D   Y+I+++  C  G +  A     EM  KGF   +   + L+ G  NAG  
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++  MIK+    ++ TF+ LI++  K G++    ++   + + G+  +  TY  L
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSL 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ++EA +++  ++  G  P    +  +I G  +  + DD    F EM ++G 
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   Y  L+    + G+   A     EM    + P    + ++ DGL  C   +L + 
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL--CDNGELEKA 492

Query: 319 IEL 321
           +E+
Sbjct: 493 LEI 495



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 145/323 (44%), Gaps = 3/323 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   ++ S  TLS++I  F +   +  A     K      +   +++N+LL  LC    
Sbjct: 114 MESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECR 173

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ RM+  G  P   T   LVN  C +GK+ +A   +  M + GF P       
Sbjct: 174 VSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGP 233

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  +  +G    A +++ KM ++   LD   ++ +I+ +CK G ++    ++  +   G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             AD+ TY  LI     AG  D+  +LL ++++    P    ++ +I    + G+  +A 
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM  +G  PN   Y  LI    +  R  EA   +  M   G  P    F+++ +G 
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGY 413

Query: 308 KNCGKHDLAEKIELL-EVSLRSV 329
             C  + + + +EL  E+SLR V
Sbjct: 414 --CKANRIDDGLELFREMSLRGV 434



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 135/286 (47%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+AV++F           V+ +N L  A+ + K +    AL ++M  KG      T +I+
Sbjct: 70  DDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIM 129

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K+  A   + ++   G+ P     + L+ GL     +  A ++V++M++ G 
Sbjct: 130 INCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGH 189

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              L T N+L+  +C +G+V   V +   + + G   +  TY  ++  + K+G    A  
Sbjct: 190 KPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAME 249

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  + E   K     Y+ II G+ + G  D+AF  F+EM+IKG   +   Y  LI    
Sbjct: 250 LLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFC 309

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             GR+ + A  L +M +  ++P    F ++ D     GK   A+++
Sbjct: 310 NAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 84/215 (39%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K  +A +  ++M      P V   + L   +      E    +  +M  +G    + T +
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I   C+  ++ +       + KLG   D   +  L+  +     + EA  L+  +VE 
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           GHKP       ++ G+   G+  DA      M   G  PN   Y  ++ +  + G+   A
Sbjct: 188 GHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              L +M E  +   +  + ++ DGL   G  D A
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNA 282


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  131 bits (329), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 131/250 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + +   K G VD A E+ ++      +  +  YNSL+  LC+      A  L++ M
Sbjct: 365 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 424

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              GF PD  TY  L++A+C S +M  A E L++M D+   P V   ++L+ G   +G L
Sbjct: 425 EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGML 484

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+++G + +  T+NSLI+  C    +    E+Y  +C  G+  D +TY IL
Sbjct: 485 EDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNIL 544

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L  ++V  G     S Y  +IKG ++R +F +A   F +M+ +G 
Sbjct: 545 IKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGL 604

Query: 259 PPNRPVYTML 268
             +R +Y + 
Sbjct: 605 VADREIYNIF 614



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 122/265 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  LC+      A  ++R MI +G  PD   Y  L++ +C  G +  A     EM 
Sbjct: 226 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ 285

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +  +P       ++ GL   G +  A ++ ++M+ +    D  T+ +LI+  CK G+++
Sbjct: 286 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 345

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + ++GL  ++ TY  L   + K G +D A  LLH +   G +     Y  ++
Sbjct: 346 EAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 405

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  D A     +M++ G  P+   YT L+    +    V A   L +M +  L 
Sbjct: 406 NGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQ 465

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    F+++ +G    G  +  EK+
Sbjct: 466 PTVVTFNVLMNGFCMSGMLEDGEKL 490



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 4/298 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+ F K G V +A  +F++          + Y +++  LC+      A  L   M+ 
Sbjct: 262 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 321

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   PD+ TY  L++ +C  GKM+EA     +M   G  P +     L  GL   G +++
Sbjct: 322 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDT 381

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +++++M ++G  L++ T+NSL+  +CK+G ++  V++   +   G   D  TY  L+ 
Sbjct: 382 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A  K+  +  A  LL  +++   +P    +  ++ G    G  +D       M  KG  P
Sbjct: 442 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 501

Query: 261 NRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           N   Y  LI   C R         Y   M   G+ P    ++++  G  +C   ++ E
Sbjct: 502 NATTYNSLIKQYCIRNNMRATTEIYR-GMCAKGVVPDGNTYNILIKG--HCKARNMKE 556



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IE M+   L  +P T + +I    K G V  A  V  +  +       ++Y +L+   
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     AY L   M ++   PD  TY  ++   C +G++ EA +   EM  K   P  
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  + N+M++ G   ++ T+ +L + +CK GEV+   E+ + 
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 388

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C+ GL  ++ TY  L+  + KAG ID+A +L+ ++   G  P    Y  ++    +  +
Sbjct: 389 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
              A     +M  +   P    + +L+      G   +    L  M E G+ P +  ++
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 507



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 123/268 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  + M+   +S    T + +I    + G V  A ++F++      +   + Y +L+  
Sbjct: 278 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A++L  +M++ G  P+  TY  L +  C  G++  A E L EM  KG    
Sbjct: 338 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 397

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + LV GL  AG ++ A +++  M   GF  D  T+ +L++  CKS E+    E+  
Sbjct: 398 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 457

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    L   V T+ +L+     +GM+++  +LL  ++E G  P  + Y  +IK    R 
Sbjct: 458 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 517

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
                   +  M  KG  P+   Y +LI
Sbjct: 518 NMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 84/177 (47%)

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ +M  +G   +  T+N +I  +CK+G+V     +   +   G+  D   Y  LI   
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 268

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +  A+RL   + +    P    Y  +I G+ + G+  +A   F EM  K   P+ 
Sbjct: 269 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 328

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             YT LI    + G+  EA +   +M +MGLTP    +  + DGL  CG+ D A ++
Sbjct: 329 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 385



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSL+   C          + R M  KG VPD  TY IL+   C +  M+EA    ++M 
Sbjct: 506 YNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMV 565

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KGFN  V   + L++G         A+++  +M ++G V D E +N   +     G++E
Sbjct: 566 GKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 625

Query: 175 FCVEMYYSVCKLGLCADVST 194
             +E+     +  L  D+ T
Sbjct: 626 LTLELCDEAIEKCLVGDIQT 645



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + K   +  A E+  +      Q  V+ +N L+   C   +      L++ M
Sbjct: 435 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 494

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG +P+  TY  L+  +C    MR   E  + M  KG  P     ++L++G   A  +
Sbjct: 495 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 554

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   M+ +GF L + ++N+LI+   K  +     E++  + + GL AD   Y I 
Sbjct: 555 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 614

Query: 199 IPAVSKAGMIDEAFRLLHNLVE 220
                  G ++    L    +E
Sbjct: 615 ADINYDEGKMELTLELCDEAIE 636


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 131/250 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + +   K G VD A E+ ++      +  +  YNSL+  LC+      A  L++ M
Sbjct: 465 TYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM 524

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              GF PD  TY  L++A+C S +M  A E L++M D+   P V   ++L+ G   +G L
Sbjct: 525 EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGML 584

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+++G + +  T+NSLI+  C    +    E+Y  +C  G+  D +TY IL
Sbjct: 585 EDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNIL 644

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L  ++V  G     S Y  +IKG ++R +F +A   F +M+ +G 
Sbjct: 645 IKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGL 704

Query: 259 PPNRPVYTML 268
             +R +Y + 
Sbjct: 705 VADREIYNIF 714



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 122/265 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  LC+      A  ++R MI +G  PD   Y  L++ +C  G +  A     EM 
Sbjct: 326 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQ 385

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +  +P       ++ GL   G +  A ++ ++M+ +    D  T+ +LI+  CK G+++
Sbjct: 386 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 445

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + ++GL  ++ TY  L   + K G +D A  LLH +   G +     Y  ++
Sbjct: 446 EAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 505

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G  D A     +M++ G  P+   YT L+    +    V A   L +M +  L 
Sbjct: 506 NGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQ 565

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    F+++ +G    G  +  EK+
Sbjct: 566 PTVVTFNVLMNGFCMSGMLEDGEKL 590



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 135/298 (45%), Gaps = 4/298 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+ F K G V +A  +F++          + Y +++  LC+      A  L   M+ 
Sbjct: 362 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 421

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   PD+ TY  L++ +C  GKM+EA     +M   G  P +     L  GL   G +++
Sbjct: 422 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDT 481

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +++++M ++G  L++ T+NSL+  +CK+G ++  V++   +   G   D  TY  L+ 
Sbjct: 482 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A  K+  +  A  LL  +++   +P    +  ++ G    G  +D       M  KG  P
Sbjct: 542 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601

Query: 261 NRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           N   Y  LI   C R         Y   M   G+ P    ++++  G  +C   ++ E
Sbjct: 602 NATTYNSLIKQYCIRNNMRATTEIYR-GMCAKGVVPDGNTYNILIKG--HCKARNMKE 656



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IE M+   L  +P T + +I    K G V  A  V  +  +       ++Y +L+   
Sbjct: 309 KLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGF 368

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     AY L   M ++   PD  TY  ++   C +G++ EA +   EM  K   P  
Sbjct: 369 CKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE 428

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  + N+M++ G   ++ T+ +L + +CK GEV+   E+ + 
Sbjct: 429 VTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHE 488

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C+ GL  ++ TY  L+  + KAG ID+A +L+ ++   G  P    Y  ++    +  +
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
              A     +M  +   P    + +L+      G   +    L  M E G+ P +  ++
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYN 607



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 139/308 (45%), Gaps = 7/308 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF----NCQQCVLLYNSLLFALCEVKLFHGA 71
            P+   +  +   + G++D A ++F+K   +    +   C L  + L   L  +K+   A
Sbjct: 181 DPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKI---A 237

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +       G   +  +Y I+ ++ C  G++ EA + L +M  +G  P V     ++ G
Sbjct: 238 LKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVING 297

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L+   +++ +M  +G   +  T+N +I  +CK+G+V     +   +   G+  D
Sbjct: 298 YCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 357

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI    K G +  A+RL   + +    P    Y  +I G+ + G+  +A   F 
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  K   P+   YT LI    + G+  EA +   +M +MGLTP    +  + DGL  CG
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCG 477

Query: 312 KHDLAEKI 319
           + D A ++
Sbjct: 478 EVDTANEL 485



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 123/268 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  + M+   +S    T + +I    + G V  A ++F++      +   + Y +L+  
Sbjct: 378 YRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A++L  +M++ G  P+  TY  L +  C  G++  A E L EM  KG    
Sbjct: 438 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELN 497

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + LV GL  AG ++ A +++  M   GF  D  T+ +L++  CKS E+    E+  
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    L   V T+ +L+     +GM+++  +LL  ++E G  P  + Y  +IK    R 
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
                   +  M  KG  P+   Y +LI
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSL+   C          + R M  KG VPD  TY IL+   C +  M+EA    ++M 
Sbjct: 606 YNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMV 665

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KGFN  V   + L++G         A+++  +M ++G V D E +N   +     G++E
Sbjct: 666 GKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKME 725

Query: 175 FCVEMYYSVCKLGLCADVST 194
             +E+     +  L  D+ T
Sbjct: 726 LTLELCDEAIEKCLVGDIQT 745



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 89/202 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + K   +  A E+  +      Q  V+ +N L+   C   +      L++ M
Sbjct: 535 TYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWM 594

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG +P+  TY  L+  +C    MR   E  + M  KG  P     ++L++G   A  +
Sbjct: 595 LEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 654

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   M+ +GF L + ++N+LI+   K  +     E++  + + GL AD   Y I 
Sbjct: 655 KEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIF 714

Query: 199 IPAVSKAGMIDEAFRLLHNLVE 220
                  G ++    L    +E
Sbjct: 715 ADINYDEGKMELTLELCDEAIE 736


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/290 (28%), Positives = 143/290 (49%), Gaps = 2/290 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           ++  +  A  C   ++ +++L+  LC   LF   + +  +M   G  PD R YA +++  
Sbjct: 238 DLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGV 297

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C   ++  A+  L  M   G +P V   + L++GL +A   E A+ ++ +M  +   LD 
Sbjct: 298 CKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDD 357

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN L++ +C++G V+  +E+   + + G   DV TY  +I    K G+IDEA  LL +
Sbjct: 358 VTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRS 417

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G +P    Y  ++KG+    ++ DA    S+M  +G PPN   +  LI    + G 
Sbjct: 418 MAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 477

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
             +A   L +M   G +P    +  V DGL   G  D  E +ELL V ++
Sbjct: 478 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTD--EALELLNVMVK 525



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 134/274 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   ++GLVD  +EV  +     C   V+ Y +++   C+  L   A  L+R M
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  +Y I++   CS+ +  +A+E + +M  +G  P     + L+  L   G +
Sbjct: 419 AACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLV 478

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ +M+  G   DL +++++I+ + K+G  +  +E+   + K G+  +   Y  +
Sbjct: 479 EQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSI 538

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+S  G I++  ++  N+ +   +    LY  +I  + +RG+ D A  F + M   G 
Sbjct: 539 ASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGC 598

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            PN   YT+LI      G   EA   L E+   G
Sbjct: 599 VPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 4/282 (1%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E+F+K    +C    + +N L+  LC+  L      ++ +M+  G +PD  TY  ++N +
Sbjct: 347 EMFDK----DCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGF 402

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G + EA   L+ M+  G  P      ++++GL +A     A++++++MI+QG   + 
Sbjct: 403 CKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNP 462

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN+LI  +CK G VE  +E+   +   G   D+ +Y  +I  + KAG  DEA  LL+ 
Sbjct: 463 VTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNV 522

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +V+ G  P   +Y+ I   +   G+ +     F  ++      +  +Y  +I+   + G 
Sbjct: 523 MVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGE 582

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              A  +L  M   G  P    + ++  GL + G    A++I
Sbjct: 583 TDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEI 624



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 3/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++      G + +A+ V +      C     +Y+  L A C    F GA  ++R +  +G
Sbjct: 117 LVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRG 176

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLESA 141
              D     +++ A C  G + EA   L+++    G  P V   + +++GL  A      
Sbjct: 177 CALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHV 236

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           + ++ +M+  G   ++ TF++LI  +C++G  E   E++  + + G   DV  Y  +I  
Sbjct: 237 QDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDG 296

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           V K   ++ A  +L+ +   G  P    Y  ++KG+    ++++A    +EM  K  P +
Sbjct: 297 VCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLD 356

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              + +L+    + G        L +M E G  P    +  V +G   C +  + E + L
Sbjct: 357 DVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGF--CKEGLIDEAVML 414

Query: 322 L 322
           L
Sbjct: 415 L 415



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 1/236 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY  LV A C+ G++ +A   L +M+ +G  P      + ++    A     A  +
Sbjct: 109 PNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGV 168

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC-KLGLCADVSTYKILIPAVS 203
           +  +  +G  LD+   N +++ +C  G V+  V +   +    G   DV +Y  ++  + 
Sbjct: 169 LRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLC 228

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            A        L+  +V  G  P    ++ +I  + R G F+      ++M   G  P+  
Sbjct: 229 MARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVR 288

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +Y  +I    +  R   A   L  M   GL+P   C++ +  GL +  + + AE +
Sbjct: 289 MYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGL 344


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 1/296 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +ELM+  NL  + +T + +I+ + K   V  A+ V NK         V+ YNSL+   C 
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  AY L+  M  +G VPD  TY  ++++ C S ++ EA +    +  K   P V  
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVM 534

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G   AG +  A  M+ KM+ +  + +  TFN+LI  +C  G+++    +   + 
Sbjct: 535 YTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMV 594

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K+ L   VST  ILI  + K G  D A+R    ++  G KP    Y   I+   R G+  
Sbjct: 595 KIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQ 654

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           DA    ++MK  G  P+   Y+ LI   G  GR   A   L  M + G  P    F
Sbjct: 655 DAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTF 710



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 137/288 (47%), Gaps = 6/288 (2%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     +D A+++F K    +C   V  Y  L+ ALC  +    A  L++ M  KG  
Sbjct: 296 HGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIK 355

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY +L+++ CS  K+ +A+E L +M +KG  P V   + L+ G    G +E A  +
Sbjct: 356 PNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDV 415

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V  M  +    +  T+N LI+  CK   V   + +   + +  +  DV TY  LI    +
Sbjct: 416 VELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G  D A+RLL  + + G  P P  Y  +I  + +  + ++A   F  ++ K   PN  +
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVM 534

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           YT LI    + G+  EA   L +M      P S  F+ +  GL   GK
Sbjct: 535 YTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGK 582



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 138/294 (46%), Gaps = 1/294 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + +   +D+A +VF +     C++  + Y  L+  LC  +    A  L  +M
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKM 314

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P  RTY +L+ A C S +  EA   ++EM +KG  P +    +L+  L +   L
Sbjct: 315 KDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKL 374

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++ +M+++G + ++ T+N+LI   CK G +E  +++   +    L  +  TY  L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNEL 434

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   + +A  +L+ ++E    P    Y  +I G  R G FD A+   S M  +G 
Sbjct: 435 IKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGL 493

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   YT +I    +  R  EA +    + +  + P    +  + DG    GK
Sbjct: 494 VPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGK 547



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 144/318 (45%), Gaps = 17/318 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM    L   P T + +I+   K   V+ A ++F+     +    V++Y +L+  
Sbjct: 482 YRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDG 541

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+    + A+ ++ +M+ K  +P+  T+  L++  C+ GK++EA    ++M      P 
Sbjct: 542 YCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPT 601

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+  LL  G  + A +   +M+  G   D  T+ + I+T C+ G ++   +M  
Sbjct: 602 VSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVA 661

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D+ TY  LI      G  + AF +L  + + G +P    +  +IK +    
Sbjct: 662 KMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLE-- 719

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                       K+KG  P   V + ++        F      L +M E G+TP ++ ++
Sbjct: 720 --------MKYGKVKGGEPGVCVMSNMM-------EFDIVVELLEKMVEHGVTPNAKSYE 764

Query: 302 LVTDGLKNCGKHDLAEKI 319
            +  G+   G   +AEK+
Sbjct: 765 KLMLGICEIGNLRVAEKV 782



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 145/334 (43%), Gaps = 36/334 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I+       ++ A E+  +         V+ YN+L+   C+  +   A  ++  
Sbjct: 359 HTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVEL 418

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +   P+ RTY  L+  +C    + +A   L +M ++   P V   + L+ G   +G 
Sbjct: 419 MESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            +SA ++++ M  +G V D  T+ S+I+++CKS  VE   +++ S+ +  +  +V  Y  
Sbjct: 478 FDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTA 537

Query: 198 LIPAVSKAGMIDEAF-------------------RLLHNLVEDGH--------------- 223
           LI    KAG ++EA                     L+H L  DG                
Sbjct: 538 LIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKID 597

Query: 224 -KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P  S    +I  + + G FD A+  F +M   G  P+   YT  I    R GR  +A 
Sbjct: 598 LQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAE 657

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           + + +M E G++P    +  +  G  + G+ + A
Sbjct: 658 DMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSA 691



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y SL+   C+ K    A+ + + M  KG   ++  Y  L++  C   ++ EA +   +M 
Sbjct: 256 YTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMK 315

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D    P VR   +L++ L  +     A  +V +M ++G   ++ T+  LI+++C   ++E
Sbjct: 316 DDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLE 375

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + + GL  +V TY  LI    K GMI++A  ++  +     +P    Y  +I
Sbjct: 376 KARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG  +R     A    ++M  +   P+   Y  LI    R G F  A   L  M + GL 
Sbjct: 436 KGYCKR-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P    +  + D L  C    + E  +L +
Sbjct: 495 PDPWTYTSMIDSL--CKSKRVEEACDLFD 521



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 112/254 (44%), Gaps = 4/254 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+LL +L    L      +   M+     P+  TY  +VN +C  G + EA +++  + 
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G +P       L+ G      L+SA ++  +M  +G   +   +  LI  +C    ++
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +        V TY +LI A+  +    EA  L+  + E G KP    Y  +I
Sbjct: 306 EAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLI 365

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTE-MG 292
             +  + + + A     +M  KG  PN   Y  LI   C RG   +E A  +VE+ E   
Sbjct: 366 DSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRG--MIEDALDVVELMESRN 423

Query: 293 LTPISRCFDLVTDG 306
           L P +R ++ +  G
Sbjct: 424 LRPNTRTYNELIKG 437



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 4/198 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+  L   G ++  KQ+  +M++     ++ T+N ++   CK G VE   +    + +
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVE 246

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D  TY  LI    +   +D AF++   +   G +     Y  +I G+    + D+
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDE 306

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A   F +MK     P    YT+LI  +CG   R  EA N + EM E G+ P    + ++ 
Sbjct: 307 AMDLFVKMKDDDCYPTVRTYTVLIKALCG-SERKSEALNLVKEMEEKGIKPNIHTYTVLI 365

Query: 305 DGLKNCGKHDLAEKIELL 322
           D L  C +  L +  ELL
Sbjct: 366 DSL--CSQCKLEKARELL 381



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 107/244 (43%), Gaps = 23/244 (9%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL----- 67
           VSP   T S +I+ +G  G  ++A  V  +     C+     + SL+  L E+K      
Sbjct: 668 VSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKG 727

Query: 68  -------------FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
                        F     L+ +M+  G  P+ ++Y  L+   C  G +R A++    M 
Sbjct: 728 GEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQ 787

Query: 115 DK-GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            K G +P     + L+           A ++V+ MI  G +  LE+   LI  + K GE 
Sbjct: 788 QKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEK 847

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS-LYAP 232
           E    ++ ++ + G   D   +KI+I  V K G++ EAF  L N++E     F S  Y+ 
Sbjct: 848 ERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLV-EAFYELFNVMEKNGCTFSSQTYSL 906

Query: 233 IIKG 236
           +I+G
Sbjct: 907 LIEG 910



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 115/271 (42%), Gaps = 19/271 (7%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +  I+ + + G + +A ++  K         +  Y+SL+    ++   + A+ +++R
Sbjct: 638 HTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKR 697

Query: 78  MIRKGFVPDKRTYAILVN---------------AWCSSGKMRE---AQEFLQEMSDKGFN 119
           M   G  P + T+  L+                  C    M E     E L++M + G  
Sbjct: 698 MHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVT 757

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFCVE 178
           P  +  + L+ G+   G L  A+++ + M  K+G       FN+L+   CK  +     +
Sbjct: 758 PNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAK 817

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +  +G    + + KILI  + K G  +    +  NL++ G+      +  II G+ 
Sbjct: 818 VVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVG 877

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           ++G  +  +  F+ M+  G   +   Y++LI
Sbjct: 878 KQGLVEAFYELFNVMEKNGCTFSSQTYSLLI 908


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 147/312 (47%), Gaps = 10/312 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K G + +AV++F +    +C    + YNSL+   C       A  L+ +M
Sbjct: 257 TYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM 313

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     PD  TY  L++A+C  G++ +A E  Q+M     +P V     LV GL   G +
Sbjct: 314 VDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM 373

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ ++ ++G    + T+N +++  CKS +V    E+       G   +  TY IL
Sbjct: 374 EDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNIL 433

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCFFSEMKI 255
           +    +AG  D+A + L  L  +G  P P+   +YA I+  + R G+ DDA  F+ EM  
Sbjct: 434 VAGCCRAGRTDQALQYLDQLNSEG-GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 492

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G+ P    +  ++    +  +  +A   L EM + G TP     D V       G   +
Sbjct: 493 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAG---M 549

Query: 316 AEKIELLEVSLR 327
            +K + L   LR
Sbjct: 550 IQKADELASELR 561



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 138/290 (47%), Gaps = 2/290 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +   +++ +  + + +  T + +I  + + G +D A+ +  K    NC   V+ Y +L+ 
Sbjct: 271 LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMS 330

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C++     AY L ++M+     PD  T+  LV+  C  G+M +A E L+E++ +G  P
Sbjct: 331 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 390

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +V G   +  +  A+++V     +GFV +  T+N L+   C++G  +  ++  
Sbjct: 391 TIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 450

Query: 181 YSV-CKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
             +  + G C   V+ Y I++ A+ + G  D+A +    +++ G+ P  + +A ++  + 
Sbjct: 451 DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALC 510

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +  Q   A     EM   GH P       +++   R G   +A     E+
Sbjct: 511 KAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 560



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 141/311 (45%), Gaps = 7/311 (2%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +V+  T   +I    K  L+D A+ +     +       LL+N ++  LC       A  
Sbjct: 77  AVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALG 136

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           + R+M      PD  TY  LV+    +G++R+A + LQEM      P      ++VQ L 
Sbjct: 137 VYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLC 195

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADV 192
               ++ A+++V +M+ +G   +  T+++L++ +CK   ++  V +    V + G   D+
Sbjct: 196 LGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDI 255

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  +I  + KAG + +A  +   +      P    Y  +I G  R G  D+A     +
Sbjct: 256 VTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGK 312

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M      P+   YT L++   + GR  +A     +M    L+P    F  + DGL  CG+
Sbjct: 313 MVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL--CGE 370

Query: 313 HDLAEKIELLE 323
             + + +ELLE
Sbjct: 371 GRMEDALELLE 381



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 115/239 (48%), Gaps = 2/239 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G +D+A E+F +  A      V+ + SL+  LC       A  L+  +
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  P   TY  +V+ +C S ++R+A+E + +   +GF P     ++LV G   AG  
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 443

Query: 139 ESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A Q ++++  +G      +  +  +++ +C+ G  +  V+ Y  + + G     +T+ 
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 503

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ++ A+ KA    +A  LL  +++ GH P P     ++    R G    A    SE+++
Sbjct: 504 TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 562



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 117/252 (46%), Gaps = 5/252 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMRE-AQEFLQEMSDKGFNP-PVRGRDLLVQGLLNA 135
           M+  G+  D  T+A+++    +S K+R      L E+ D+G +P PV    +L + L +A
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAE-LCDA 59

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
               +A  + +KM + G V +  T+ +LI  +CK+  ++  + +   +   G+      +
Sbjct: 60  RDTTTAMALFDKMAELGAV-NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLH 118

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ++I  + +AG +  A  +   +  D H P    Y  ++ G+ + G+  DA     EM  
Sbjct: 119 NVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVS 177

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             H P+    T+++     G R  +A   + EM   G+   +  +  + DGL  C + D 
Sbjct: 178 ARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDE 237

Query: 316 AEKIELLEVSLR 327
           A  + L EV+ R
Sbjct: 238 AVALLLGEVTRR 249


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  131 bits (329), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 140/293 (47%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           ++ +G+ G V  AV VF +   ++C+  V  YN+++  L +   F  A+ +  RM  +G 
Sbjct: 83  MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGI 142

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD  ++ I + ++C + +   A   L  MS +G    V     +V G     +     +
Sbjct: 143 TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYE 202

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  KM+  G  L L TFN L+  +CK G+V+ C ++   V K G+  ++ TY + I  + 
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           + G +D A R++  L+E G KP    Y  +I G+ +  +F +A  +  +M  +G  P+  
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSY 322

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            Y  LI    +GG    A   + +    G  P    +  + DGL + G+ + A
Sbjct: 323 TYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRA 375



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 145/308 (47%), Gaps = 3/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+     G  + A+ +FN+      +  V+LYN+L+  L    +   A  L   M
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEM 417

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +P+ +T+ ILVN  C  G + +A   ++ M  KG+ P +   ++L+ G      +
Sbjct: 418 SEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKM 477

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A ++++ M+  G   D+ T+NSL+  +CK+ + E  +E Y ++ + G   ++ T+ IL
Sbjct: 478 ENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNIL 537

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + ++ +   +DEA  LL  +      P    +  +I G  + G  D A+  F +M+    
Sbjct: 538 LESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              + P Y ++I           A     EM +  L P    + L+ DG    G  +L  
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 318 K--IELLE 323
           K  +E++E
Sbjct: 658 KFLLEMME 665



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 123/262 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+  +   A  ++   +  GFVPD+ TY  L++  C  G+   A     E  
Sbjct: 324 YNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEAL 383

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V   + L++GL N G +  A Q+ N+M ++G + +++TFN L+  +CK G V 
Sbjct: 384 GKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVS 443

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +   G   D+ T+ ILI   S    ++ A  +L  ++++G  P    Y  ++
Sbjct: 444 DADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLL 503

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+D    +  M  KG  PN   + +L+    R  +  EA   L EM    + 
Sbjct: 504 NGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVN 563

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P +  F  + DG    G  D A
Sbjct: 564 PDAVTFGTLIDGFCKNGDLDGA 585



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 134/295 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S+   T + ++    K G V    ++ +K         +  YN  +  LC+     GA 
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAV 271

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  +I +G  PD  TY  L+   C + K +EA+ +L +M ++G  P     + L+ G 
Sbjct: 272 RMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGY 331

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A+++V   +  GFV D  T+ SLI+ +C  GE    + ++      G+  +V
Sbjct: 332 CKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNV 391

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  +S  GMI EA +L + + E G  P    +  ++ G+ + G   DA      
Sbjct: 392 ILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKV 451

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG+ P+   + +LI       +   A   L  M + G+ P    ++ + +GL
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGL 506



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 128/309 (41%), Gaps = 36/309 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+     G++  A ++ N+ +       V  +N L+  LC++     A  L++ MI KG
Sbjct: 397 LIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKG 456

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           + PD  T+ IL++ + +  KM  A E L  M D G +P V   + L+ GL      E   
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV------------------- 183
           +    M+++G   +L TFN L+E++C+  +++  + +   +                   
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGF 576

Query: 184 CKLG-----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           CK G                 + +   TY I+I A ++   +  A +L   +V+    P 
Sbjct: 577 CKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPD 636

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  ++ G  + G  +  + F  EM   G  P+      +I       R  EAA  + 
Sbjct: 637 GYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIH 696

Query: 287 EMTEMGLTP 295
            M + GL P
Sbjct: 697 RMVQKGLVP 705



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 11/167 (6%)

Query: 5   IELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFA 61
           +E MK  N SV+P   T   +I+ F K+G +D A  +F K   A+        YN ++ A
Sbjct: 554 LEEMK--NKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHA 611

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             E      A  L + M+ +   PD  TY ++V+ +C +G +    +FL EM + GF P 
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPS 671

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           +     ++  L     +  A  ++++M+++G V +       + TIC
Sbjct: 672 LTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE------AVNTIC 712


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+     T S II+   + G +D A+ +F +      +  V+ YNSL+  LC+   
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           ++    L++ M+ +  VP+  T+ +L++ +   GK++EA E  +EM  +G +P +   + 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A  M++ M++     D+ TF SLI+  C    V+  ++++ ++ K G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A+  TY IL+    ++G I  A  L   +V  G  P    Y  ++ G+   G+ + A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++         +YT +I    +GG+  +A N    +   G+ P    + ++  GL
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 308 KNCGKHDLAEKIELLE 323
             C K  L+E   LL 
Sbjct: 519 --CKKGSLSEANILLR 532



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ + SL+   C VK       + R + ++G V +  TY+ILV  +C SGK++ A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E  QEM   G  P V    +L+ GL + G LE A ++   + K    L +  + ++IE +
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+VE    ++ S+   G+  +V TY ++I  + K G + EA  LL  + EDG+ P  
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             Y  +I+   R G    +     EMK  G   +     M+I M
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 137/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G +  A E++ +         ++ YN+L+   C       A  ++  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+  L+  +C   ++ +  +  + +S +G         +LVQG   +G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G + D+ T+  L++ +C +G++E  +E++  + K  +   +  Y  +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  +I G+ ++G   +A     +M+  G+
Sbjct: 480 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  LI    R G    +A  + EM   G +  +    +V D L
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T +   +I      G V  AV + ++     CQ  ++ YNS++  +C 
Sbjct: 146 LGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICR 205

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ ++R+M  +    D  TY+ ++++ C  G +  A    +EM  KG    V  
Sbjct: 206 SGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV+GL  AG       ++  M+ +  V ++ TFN L++   K G+++   E+Y  + 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  ++ TY  L+        + EA  +L  +V +   P    +  +IKG     + D
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           D    F  +  +G   N   Y++L+    + G+   A     EM   G+ P    + ++ 
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL + GK  L + +E+ E
Sbjct: 446 DGLCDNGK--LEKALEIFE 462



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 140/295 (47%), Gaps = 2/295 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A+ +F +         ++ ++    A+   K F+      +++   G   +  T  I+
Sbjct: 70  DDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K   A   L ++   G+ P     + L+ GL   G +  A  +V++M++ G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGC 189

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D+ T+NS++  IC+SG+     +M   + +  + ADV TY  +I ++ + G ID A  
Sbjct: 190 QPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G K     Y  +++G+ + G+++D      +M  +   PN   + +L+ +  
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + G+  EA     EM   G++P    ++ + DG   C ++ L+E   +L++ +R+
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGY--CMQNRLSEANNMLDLMVRN 362



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 114/234 (48%), Gaps = 5/234 (2%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY+++ ++++ G+ PD  T+  L+N  C  GK+ +A   +  M + G  P +   + +V 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVN 201

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  +G    A  M+ KM ++    D+ T++++I+++C+ G ++  + ++  +   G+ +
Sbjct: 202 GICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY  L+  + KAG  ++   LL ++V     P    +  ++    + G+  +A   +
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELY 321

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            EM  +G  PN   Y  L+       R  EA N L  M     +P     D+VT
Sbjct: 322 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP-----DIVT 370



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + IIE   K G V++A  +F        +  V+ Y  ++  LC+      A  L+R+M  
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG----RDLLVQGLLNAG 136
            G  P+  TY  L+ A    G +  + + ++EM   GF+          D+L+ G L+  
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKS 596

Query: 137 YLE 139
           +L+
Sbjct: 597 FLD 599


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+     T S II+   + G +D A+ +F +      +  V+ YNSL+  LC+   
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           ++    L++ M+ +  VP+  T+ +L++ +   GK++EA E  +EM  +G +P +   + 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A  M++ M++     D+ TF SLI+  C    V+  ++++ ++ K G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A+  TY IL+    ++G I  A  L   +V  G  P    Y  ++ G+   G+ + A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++         +YT +I    +GG+  +A N    +   G+ P    + ++  GL
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 308 KNCGKHDLAEKIELL 322
             C K  L+E   LL
Sbjct: 519 --CKKGSLSEANILL 531



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ + SL+   C VK       + R + ++G V +  TY+ILV  +C SGK++ A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E  QEM   G  P V    +L+ GL + G LE A ++   + K    L +  + ++IE +
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+VE    ++ S+   G+  +V TY ++I  + K G + EA  LL  + EDG+ P  
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             Y  +I+   R G    +     EMK  G   +     M+I M
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 137/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G +  A E++ +         ++ YN+L+   C       A  ++  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+  L+  +C   ++ +  +  + +S +G         +LVQG   +G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G + D+ T+  L++ +C +G++E  +E++  + K  +   +  Y  +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  +I G+ ++G   +A     +M+  G+
Sbjct: 480 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  LI    R G    +A  + EM   G +  +    +V D L
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T +   +I+     G V  AV + ++     CQ  V+ YNS++  +C 
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R+M  +    D  TY+ ++++ C  G +  A    +EM  KG    V  
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV+GL  AG       ++  M+ +  V ++ TFN L++   K G+++   E+Y  + 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  ++ TY  L+        + EA  +L  +V +   P    +  +IKG     + D
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           D    F  +  +G   N   Y++L+    + G+   A     EM   G+ P    + ++ 
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL + GK  L + +E+ E
Sbjct: 446 DGLCDNGK--LEKALEIFE 462



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A+ +F +         ++ ++    A+   K F+      +++   G   +  T  I+
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K   A   L ++   G+ P     + L++GL   G +  A  +V++M++ G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D+ T+NS++  IC+SG+    +++   + +  + ADV TY  +I ++ + G ID A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G K     Y  +++G+ + G+++D      +M  +   PN   + +L+ +  
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + G+  EA     EM   G++P    ++ + DG   C ++ L+E   +L++ +R+
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGY--CMQNRLSEANNMLDLMVRN 362



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY+++ ++++ G+ PD  T+  L+      GK+ EA   +  M + G  P V   + +V 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  +G    A  ++ KM ++    D+ T++++I+++C+ G ++  + ++  +   G+ +
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY  L+  + KAG  ++   LL ++V     P    +  ++    + G+  +A   +
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELY 321

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            EM  +G  PN   Y  L+       R  EA N L  M     +P     D+VT
Sbjct: 322 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP-----DIVT 370



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + IIE   K G V++A  +F        +  V+ Y  ++  LC+      A  L+R+M  
Sbjct: 477 TTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG----RDLLVQGLLNAG 136
            G  P+  TY  L+ A    G +  + + ++EM   GF+          D+L+ G L+  
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGELDKS 596

Query: 137 YLE 139
           +L+
Sbjct: 597 FLD 599


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 163/311 (52%), Gaps = 1/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F   G + +A+++FNK T+ N    V  ++ L+   C+      A  ++  M
Sbjct: 370 TYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMM 429

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   PD  TY+ L++ +C   ++ +A+     MS +G    V+  ++++ G      +
Sbjct: 430 MKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMV 489

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +M  +    D+ T++SLI+ +CKSG + + +E+   +   G   D+ TY  +
Sbjct: 490 DEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSI 549

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   +D+A  LL  L   G +P  + Y  ++KG+ + G+ +DA   F ++ +KG+
Sbjct: 550 LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGY 609

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT++I      G F EA   L +M E G  P ++ ++++   L    ++D+AEK
Sbjct: 610 NLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEK 669

Query: 319 IELLEVSLRSV 329
           + L E+ +R +
Sbjct: 670 L-LREMIMRGL 679



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 140/297 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+E+  +      Q  V++YN+++  +C+ K  + A+ L    + K 
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKR 363

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +C  GK+++A +   +M+ K   P V    +LV G    G ++ AK
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAK 423

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+KQ    D+ T++SL++  C   EV     ++ ++   G+ A+V +Y I+I   
Sbjct: 424 NVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGF 483

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA +L   +      P    Y+ +I G+ + G+   A     EM  +G  P+ 
Sbjct: 484 CKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDI 543

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  ++    +     +A   L ++   G+ P    + ++  GL   GK + A K+
Sbjct: 544 ITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKV 600



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 139/286 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N+     T S++++ F K G +  A  V       + +  V+ Y+SL+   C V  
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A ++   M  +G   + ++Y I++N +C    + EA +  +EM  K   P V     
Sbjct: 454 VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSS 513

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  +G +  A ++V++M  +G   D+ T+NS+++ +CK   V+  + +   +   G
Sbjct: 514 LIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQG 573

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D++TY IL+  + ++G +++A ++  +L+  G+      Y  +I+G   +G FD+A 
Sbjct: 574 IRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEAL 633

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              S+M+  G  P+   Y ++I           A   L EM   GL
Sbjct: 634 ALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGL 679



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 154/325 (47%), Gaps = 16/325 (4%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T S +++ +     V+ A  +FN  +       V  YN ++   C++K+   A
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEA 492

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L + M  K   PD  TY+ L++  C SG++  A E + EM  +G  P +   + ++  
Sbjct: 493 MKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDA 552

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L    +++ A  ++ K+  QG   D+ T+  L++ +C+SG++E   +++  +   G   D
Sbjct: 553 LCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLD 612

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  Y ++I      G+ DEA  LL  + E+G  P    Y  II  +F + + D A     
Sbjct: 613 VYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLR 672

Query: 252 EMKIKG---HPPNRPVYTMLI--TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           EM ++G      +  V ++L+  T C R   +V   + L+ + E  L P    FD+  +G
Sbjct: 673 EMIMRGLLVALTDDLVASILVRRTWCARLALWVTFISLLLRVIE--LKP---GFDISDEG 727

Query: 307 --LKNCGKHDLAEKIEL--LEVSLR 327
             +   G+  L  K+    L+V+LR
Sbjct: 728 KAVVAAGQERLDSKVRCSGLDVALR 752



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 118/316 (37%), Gaps = 72/316 (22%)

Query: 77  RMIRKGFVPDKRT-----------------------------------YAILVNAWCSSG 101
           ++++ G+ PD  T                                   Y  L+N  C  G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           + + A E L+    K   P V   + ++ G+    ++  A  + ++ + +    D+ T+N
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           +LI   C  G+++  ++++  +    +  DV T+ IL+    K G I EA  +L  +++ 
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 222 GHKPFPSLYAPIIKG----------------MFRRG-------------------QFDDA 246
             KP    Y+ ++ G                M  RG                     D+A
Sbjct: 433 SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEA 492

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F EM  K   P+   Y+ LI    + GR   A   + EM   G  P    ++ + D 
Sbjct: 493 MKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDA 552

Query: 307 LKNCGKHDLAEKIELL 322
           L  C KH + + I LL
Sbjct: 553 L--CKKHHVDKAITLL 566



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++K G+  D  T  + I+  C  G++   +  +  V  +G   D  +Y  LI  + K G
Sbjct: 253 KILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVG 312

Query: 207 MIDEAFRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
               A  LL     DG   +P   +Y  II GM +    +DAF  +SE   K   P+   
Sbjct: 313 ETKAALELLRR--NDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFT 370

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           Y  LI+     G+  +A +   +MT   + P    F ++ DG   C   ++ E   +L +
Sbjct: 371 YNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGF--CKDGNIKEAKNVLAM 428

Query: 325 SLR 327
            ++
Sbjct: 429 MMK 431


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 157/307 (51%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S +  T S +I  F   G + +A+ +FNK T+ N    V  +N L+ A C+      A 
Sbjct: 241 ISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAK 300

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +  M+++G  PD  TY  L++ +C   ++  A+  L  MS +G    VR  ++++ G 
Sbjct: 301 NGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGF 360

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A ++  +M  +    ++ T+NSLI+ +CKSG + + +E+   +   G   D+
Sbjct: 361 CKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDI 420

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K  ++D+A  LL  L + G +P    Y  +I G+ + G+ +DA   F +
Sbjct: 421 ITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFED 480

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KG+      YT++I      G F EA + L +M +    P +  ++++   L +  +
Sbjct: 481 LLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDE 540

Query: 313 HDLAEKI 319
           +D AEK+
Sbjct: 541 NDKAEKL 547



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 146/300 (48%), Gaps = 6/300 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+E+  +      Q  V++Y++++ ++C+ K  + A+ L   M+ + 
Sbjct: 181 LINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRR 240

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              +  TY+ L++ +C  GK+++A     +M+ +  NP V   ++LV      G ++ AK
Sbjct: 241 ISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAK 300

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             +  M+KQG   D+ T+NSL++  C   EV     +  ++   G+ A V +Y I+I   
Sbjct: 301 NGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGF 360

Query: 203 SKAGMIDEAFRLLHNLVEDGHKP-FPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            K  M+D+A +L     E  HK  FP++  Y  +I G+ + G+   A      M  +G  
Sbjct: 361 CKIKMVDQAMKLFK---EMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQ 417

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y+ ++    +     +A   L+++ + G+ P    + ++ DGL   G+ + A  I
Sbjct: 418 PDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNI 477



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 134/293 (45%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F  +  V +AV +FN     N     + +  +L +L + K +H   +L ++M  +G  P+
Sbjct: 45  FHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPN 104

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              + IL+N +C  G +  A   L ++   G+ P     +  ++G    G +  A    +
Sbjct: 105 FVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHD 164

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++  GF LD  ++ +LI  +CK GE    +E+   V    +  DV  Y  +I ++ K  
Sbjct: 165 KLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDK 224

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +++AF L   +V          Y+ +I G    G+  DA   F++M  +   P+   + 
Sbjct: 225 NVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFN 284

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +L+    + GR  EA N L  M + G+ P    ++ + DG     + ++A+ I
Sbjct: 285 ILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSI 337



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 130/318 (40%), Gaps = 4/318 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   +   P T++L   I+ F   G +  A+   +K  A       + Y +L+  LC+
Sbjct: 128 LAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCK 187

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A  L+RR+  K    D   Y+ ++++ C    + +A +   EM  +  +  +  
Sbjct: 188 VGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVT 247

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G L+ A  + NKM  +    D+ TFN L++  CK G V+        + 
Sbjct: 248 YSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMM 307

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G+  D+ TY  L+        ++ A  +L+ +   G       Y  +I G  +    D
Sbjct: 308 KQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVD 367

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  K   PN   Y  LI    + GR   A   +  M + G  P    +  + 
Sbjct: 368 QAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSIL 427

Query: 305 DGLKNCGKHDLAEKIELL 322
           D L  C  H + + I LL
Sbjct: 428 DAL--CKNHLVDKAIALL 443



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 102/225 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  + N  +       V  YN ++   C++K+   A  L + M  K   P+  TY  
Sbjct: 331 VNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++  A E +  M D+G  P +     ++  L     ++ A  ++ K+  QG
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ T+  LI+ +CK G +E    ++  +   G    V+TY ++I      G+ DEA 
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LL  + ++   P    Y  II  +F + + D A     EM  +G
Sbjct: 511 SLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRG 555



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/265 (20%), Positives = 120/265 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+   C++ L   A++++ ++++ G+ PD  T    +  +C  G++ +A  F  ++ 
Sbjct: 108 FNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLV 167

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF+        L+ GL   G   +A +++ ++  +   LD+  ++++I+++CK   V 
Sbjct: 168 ALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVN 227

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++Y  +    + +++ TY  LI      G + +A  L + +  +   P    +  ++
Sbjct: 228 DAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILV 287

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               + G+  +A    + M  +G  P+   Y  L+           A + L  M+  G+T
Sbjct: 288 DAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVT 347

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
              R +++V +G       D A K+
Sbjct: 348 ATVRSYNIVINGFCKIKMVDQAMKL 372



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 103/271 (38%), Gaps = 45/271 (16%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+LM          T S I++   K+ LVD A+ +  K      +  +  Y  L+  LC+
Sbjct: 408 IDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCK 467

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   ++ KG+     TY +++  +CS G   EA   L +M D    P    
Sbjct: 468 GGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAIT 527

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS---------------------- 162
            ++++  L +    + A++++ +MI +G +     + S                      
Sbjct: 528 YEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTS 587

Query: 163 ----------LIETI----------CKSGEVEFCVEMYYSVC---KLGLCADVSTYKILI 199
                     L+E I           +  +VE    + YS C   K G   DV+TY ++I
Sbjct: 588 SQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMI 647

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
                 G+ DE+  LL  +  +G  P    Y
Sbjct: 648 QGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 152/316 (48%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+     T S II+   + G +D A+ +F +      +  V+ YNSL+  LC+   
Sbjct: 219 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           ++    L++ M+ +  VP+  T+ +L++ +   GK++EA E  +EM  +G +P +   + 
Sbjct: 279 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 338

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A  M++ M++     D+ TF SLI+  C    V+  ++++ ++ K G
Sbjct: 339 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 398

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A+  TY IL+    ++G I  A  L   +V  G  P    Y  ++ G+   G+ + A 
Sbjct: 399 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 458

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++         +YT +I    +GG+  +A N    +   G+ P    + ++  GL
Sbjct: 459 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 518

Query: 308 KNCGKHDLAEKIELLE 323
             C K  L+E   LL 
Sbjct: 519 --CKKGSLSEANILLR 532



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ + SL+   C VK       + R + ++G V +  TY+ILV  +C SGK++ A+
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E  QEM   G  P V    +L+ GL + G LE A ++   + K    L +  + ++IE +
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 483

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+VE    ++ S+   G+  +V TY ++I  + K G + EA  LL  + EDG+ P  
Sbjct: 484 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 543

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             Y  +I+   R G    +     EMK  G   +     M+I M
Sbjct: 544 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 137/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G +  A E++ +         ++ YN+L+   C       A  ++  M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+  L+  +C   ++ +  +  + +S +G         +LVQG   +G +
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G + D+ T+  L++ +C +G++E  +E++  + K  +   +  Y  +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  +I G+ ++G   +A     +M+  G+
Sbjct: 480 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  LI    R G    +A  + EM   G +  +    +V D L
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T +   +I+     G V  AV + ++     CQ  V+ YNS++  +C 
Sbjct: 146 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 205

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R+M  +    D  TY+ ++++ C  G +  A    +EM  KG    V  
Sbjct: 206 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 265

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV+GL  AG       ++  M+ +  V ++ TFN L++   K G+++   E+Y  + 
Sbjct: 266 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 325

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  ++ TY  L+        + EA  +L  +V +   P    +  +IKG     + D
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           D    F  +  +G   N   Y++L+    + G+   A     EM   G+ P    + ++ 
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL + GK  L + +E+ E
Sbjct: 446 DGLCDNGK--LEKALEIFE 462



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A+ +F +         ++ ++    A+   K F+      +++   G   +  T  I+
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K   A   L ++   G+ P     + L++GL   G +  A  +V++M++ G 
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D+ T+NS++  IC+SG+    +++   + +  + ADV TY  +I ++ + G ID A  
Sbjct: 190 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 249

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G K     Y  +++G+ + G+++D      +M  +   PN   + +L+ +  
Sbjct: 250 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 309

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + G+  EA     EM   G++P    ++ + DG   C ++ L+E   +L++ +R+
Sbjct: 310 KEGKLQEANELYKEMITRGISPNIITYNTLMDGY--CMQNRLSEANNMLDLMVRN 362



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY+++ ++++ G+ PD  T+  L+      GK+ EA   +  M + G  P V   + +V 
Sbjct: 142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  +G    A  ++ KM ++    D+ T++++I+++C+ G ++  + ++  +   G+ +
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY  L+  + KAG  ++   LL ++V     P    +  ++    + G+  +A   +
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELY 321

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            EM  +G  PN   Y  L+       R  EA N L  M     +P     D+VT
Sbjct: 322 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP-----DIVT 370


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  130 bits (328), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++  +      Q  V++YN+++ ++C+VKL + A+ L   M+ KG
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +C  GKM++A +   +M  +  NP V   ++LV G      L+ AK
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+KQG   D+ T+NSL++  C   EV     ++ ++ + G+  ++ +Y I+I   
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +DEA  L   +  +   P    Y  +I G+ + G+   A     EM  +G P ++
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             Y  ++    +  +  +A   L +M + G+ P    +  + DGL   G+
Sbjct: 423 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGR 472



 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 157/307 (51%), Gaps = 2/307 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I  F   G + +A ++FNK    N    V  +N L+   C+ +    A 
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAK 302

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M+++G  PD  TY  L++ +C   ++ +A+     +S +G NP +    +++ G 
Sbjct: 303 NVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGF 362

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A  +  +M     + D+ T+NSLI+ +CK G++ + +++   +   G+  D 
Sbjct: 363 CKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDK 422

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K   +D+A  LL  + ++G +P    Y  ++ G+ + G+ +DA   F +
Sbjct: 423 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFED 482

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KG+  +  +YT +I      G F E+ + L +M E G  P +  ++++   L +  +
Sbjct: 483 LLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKDE 542

Query: 313 HDLAEKI 319
           +D AEK+
Sbjct: 543 NDKAEKL 549



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 137/282 (48%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T +++++ F K   +  A  V         +  V  YNSL+   C VK  + A
Sbjct: 277 NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKA 336

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   + ++G  P+  +Y+I+++ +C   K+ EA    +EM      P V   + L+ G
Sbjct: 337 KHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G +  A ++V++M  +G   D  T+NS+++ +CK+ +V+  + +   +   G+  D
Sbjct: 397 LCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 456

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY  L+  + K G +++A  +  +L+  G+    ++Y  +I+G    G FD++    S
Sbjct: 457 ICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLS 516

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  PN   Y ++I          +A   L EM   GL
Sbjct: 517 KMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G +  A++  +K  A       + Y +L+  LC+V     A  L+RR+
Sbjct: 144 TLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRV 203

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+   Y  ++++ C    + EA +   EM  KG +P V   + L+ G    G +
Sbjct: 204 DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKM 263

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NKMI +    ++ TFN L++  CK   ++    +   + K G+  DV TY  L
Sbjct: 264 KDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSL 323

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +++A  + + + + G  P    Y+ +I G  +  + D+A   F EM     
Sbjct: 324 MDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI 383

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    + G+   A   + EM + G+      ++ + D L  C  H + + 
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDAL--CKNHQVDKA 441

Query: 319 IELL 322
           I LL
Sbjct: 442 IALL 445



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 119/262 (45%), Gaps = 1/262 (0%)

Query: 35  NAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           N V  FN+     N +  +  +  +L +L +   +    +L R+M   G   D    +IL
Sbjct: 54  NLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSIL 113

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +   G+   +   L ++   G+ P V     L++GL   G +  A Q  +K++  GF
Sbjct: 114 INCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGF 173

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
            L+  ++ +LI  +CK G+    +++   V    +  +V  Y  +I ++ K  +++EAF 
Sbjct: 174 HLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFD 233

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +V  G  P    Y  +I G    G+  DA   F++M  +   PN   + +L+    
Sbjct: 234 LYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFC 293

Query: 274 RGGRFVEAANYLVEMTEMGLTP 295
           +  R  EA N L  M + G+ P
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKP 315



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           K++K G+  ++ T  +LI+ +C  G++   ++ +  V  LG   +  +Y  LI  + K G
Sbjct: 132 KILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVG 191

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
               A +LL  +     +P   +Y  II  M +    ++AF  +SEM  KG  P+   Y 
Sbjct: 192 QTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYN 251

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            LI+     G+  +A +   +M    + P    F+++ DG   C +  L E   +L + +
Sbjct: 252 ALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGF--CKERRLKEAKNVLAMMM 309

Query: 327 R 327
           +
Sbjct: 310 K 310



 Score = 41.2 bits (95), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 64/148 (43%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           F  ++ ++ KS      V ++  +   G+ +D+    ILI   S+ G    +F +L  ++
Sbjct: 75  FGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKIL 134

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G++P       +IKG+  +GQ   A  F  ++   G   N+  Y  LI    + G+  
Sbjct: 135 KMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTS 194

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
            A   L  +    + P    ++ + D +
Sbjct: 195 AALQLLRRVDGKLVQPNVVMYNTIIDSM 222


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 3/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M     ++       +++   K G++  A+EVF    + +C   ++ YN L+ + C    
Sbjct: 1   MSKAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE 60

Query: 68  FHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           F  A  L + M R+  V PD+ TY  L++  CSSG    A++ L EM DK     V    
Sbjct: 61  FGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYS 120

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            +++ L+     E + +++ +M+  G   D+  FN +++   +S  +E   E+Y  + + 
Sbjct: 121 SIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVES 180

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV--EDGHKPFPSLYAPIIKGMFRRGQFD 244
           G   D  +Y ILI  ++K G +DE+ ++L  +     G+ P    ++ +I G+ R G+ +
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELE 240

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F  M   G  PN+  YT LI    R  + ++A     +MT+  + P +  ++ + 
Sbjct: 241 KALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 300

Query: 305 DGLKNCGKHDLAEKI 319
            G    G  D AEK+
Sbjct: 301 AGYCKRGSMDEAEKL 315



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 9/282 (3%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT--AFNCQQCVLLYNSLLFALCEVK 66
           KP N+S       ++I    K G +D ++++ ++    A      V+ +++L+  LC   
Sbjct: 183 KPDNVS-----YHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  +   M+  G  P+K TY  L+   C + K+ +A+E  ++M+     P     +
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYN 297

Query: 127 LLVQGLLNAGYLESAKQMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            L+ G    G ++ A+++  +M    G    + TFN+LI+  CK G++    E+   +  
Sbjct: 298 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT 357

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL AD  TY+ILI  +S+A  +DEA  +   + E      P      + G+ + G  D 
Sbjct: 358 KGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQ 417

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           A+  F   +  G  PN   + +L     + GR VE A  L+E
Sbjct: 418 AYAVFEATRKSGAVPNPETFRILSESLIKLGR-VEDAQKLME 458



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 7/319 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M+  N++ +  T S II+   K    + + +V  +  A  C   V  +N ++   
Sbjct: 102 KLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGF 161

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--GFNP 120
                   A  + + M+  G+ PD  +Y IL++     GK+ E+ + L EM+ +  G+ P
Sbjct: 162 ARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVP 221

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     L+ GL   G LE A ++   M++ G   +  T+ +LI  +C++ +V    E++
Sbjct: 222 NVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELF 281

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFR 239
             + +  +  D   Y  LI    K G +DEA +L   +    G +P    +  +I G  +
Sbjct: 282 EKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCK 341

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG--LTPIS 297
            G+   A    +EM  KG   +   Y +LI    R  +  EA     +M E    L P+S
Sbjct: 342 LGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVS 401

Query: 298 RCFDLVTDGLKNCGKHDLA 316
            C   V  GL   G  D A
Sbjct: 402 -CVSFV-GGLCKTGNIDQA 418


>gi|224107773|ref|XP_002333469.1| predicted protein [Populus trichocarpa]
 gi|222836989|gb|EEE75382.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 3/314 (0%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK- 66
            M+     + P T +++I ++G+ GL + A+++F +  A  C      Y  L+  LC  K 
Sbjct: 722  MRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKG 781

Query: 67   -LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A  + R MIR G VPDK      +   C  GK+ EA++ +  +   GF  P    
Sbjct: 782  RKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPA-SY 840

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L ++ L  AG LE A  +V+++  +   LD  T  SL+  + + G +E  +    S+ +
Sbjct: 841  SLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQ 900

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            +G+   V  Y  LI    +  +  +A  +  ++ ++G +P    Y+ +I+G        +
Sbjct: 901  VGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIE 960

Query: 246  AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            A+  F  +K KG  P+   Y+M ++   R G+  EA   L +M + G+ P +  F  V  
Sbjct: 961  AWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFF 1020

Query: 306  GLKNCGKHDLAEKI 319
            GL   GK  LA+ +
Sbjct: 1021 GLNREGKQSLAQTV 1034



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 148/353 (41%), Gaps = 36/353 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+ Y+     +T +++I ++GK  L+  A+ V  K     C+  V +Y   L +LC+
Sbjct: 227 LEEMEKYSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCD 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVN----------------------------- 95
                 A  + + M+++   P+   Y +L+N                             
Sbjct: 287 AGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDV 346

Query: 96  ------AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                 ++C +G++REA E ++++ +K         + LV+GL  A  +  A ++V  M 
Sbjct: 347 HVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMK 406

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++ FV D + +  +I    +  E+   ++++ S+ + G     STY  L+  + ++    
Sbjct: 407 RKDFV-DGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQ 465

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +   L   ++E G +        I+ G  R+    +A+  F  M+ KG  P    Y++ I
Sbjct: 466 KCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFI 525

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
               +  R  E    L +M    +      F+ V   ++  G+ D   K++ +
Sbjct: 526 KELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQM 578



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 8/265 (3%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
            +VD  +E   K   ++C++ +  +  L+    + KL   A  +  +M + G  PD   Y
Sbjct: 221 SVVDVLLEEMEK---YSCERDIKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVY 277

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            + +++ C +GK   A E  +EM  +   P +    +L+  L  +G + + + + + MI+
Sbjct: 278 EVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIR 337

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              + + +    ++++ C +G +   +E+   +    +  D    + L+  +S+A  I +
Sbjct: 338 VSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIAD 397

Query: 211 AFRLLHNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           A  ++  +     K F    +Y  II G  RR +   A   F  MK  GH P    YT L
Sbjct: 398 ALEIVEIM---KRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTEL 454

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           +    R   + +      EM E G+
Sbjct: 455 MQHLFRSNEYQKCCELYDEMLERGV 479



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 2   WKTIE-LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSL 58
           W  I+  ++   +  +P+ ++  +   G HG  + A+  F      N  CQ     YN  
Sbjct: 646 WPIIQDALEKCTIQFTPELVAETLRNCGMHG--NAALHFFAWVGKQNGFCQ-TTETYNMA 702

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +      K F    +L   M R+GF+    T+AI++  +  +G    A +   EM   G 
Sbjct: 703 MKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGC 762

Query: 119 NPPVRGRDLLVQGL--LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           NP       L+  L       ++ A ++  +MI+ G V D E   + +  +C+ G++   
Sbjct: 763 NPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEA 822

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +   S+CK G     S Y + I A+ +AGM++EA  L+  +  +        +A ++ G
Sbjct: 823 RKSVDSLCKAGFTVPAS-YSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHG 881

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + ++G+ ++A      MK  G  P   VYT LI    R     +A      M + G  P
Sbjct: 882 LLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEP 940



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 57/116 (49%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            ++ MK   ++ +    + +I  F +  L   A+E+F       C+  ++ Y++L+    +
Sbjct: 895  VDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMD 954

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             +    A+ +   +  KG  PD +TY++ ++  C +GK  EA + L +M D G  P
Sbjct: 955  TENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVP 1010



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 66  KLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPP 121
           K+ H AY     +  + GF    +TY  ++    ++G+ RE       L+EM        
Sbjct: 182 KVPHLAYRFFNWVKTKDGFCHTTKTYNTMLY---TAGEAREFSVVDVLLEEMEKYSCERD 238

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           ++   +L++    A  +  A  +  KM K G   D+E +   + ++C +G+ E  +E+Y 
Sbjct: 239 IKTWTILIRQYGKAKLIGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYK 298

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  ++S YK+L+  ++K+G +     +  +++     P   ++  ++K     G
Sbjct: 299 EMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAG 358

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           +  +A     ++K K    +  V   L+    R  R  +A
Sbjct: 359 RIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADA 398



 Score = 44.3 bits (103), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 64/329 (19%), Positives = 117/329 (35%), Gaps = 43/329 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+MK  +  V  +   +II  + +   +  A+++F     F        Y  L+  L  
Sbjct: 402 VEIMKRKDF-VDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFR 460

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +     L   M+ +G   D      +V        + EA E  + M DKG  P  + 
Sbjct: 461 SNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKS 520

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC--VEMYYS 182
             + ++ L      +   +++ KM      +  E F  +I  + + GE++    V+  + 
Sbjct: 521 YSIFIKELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHR 580

Query: 183 VCKLGLCADVSTYKIL------------------------IPAVSKA---GMIDEAFRLL 215
           +C+L    D  +   L                        +  +SKA     + E  R+L
Sbjct: 581 ICRLHSLNDEVSRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRIL 640

Query: 216 HNL-----VEDGHKP-----FPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKGHPPNRPV 264
            +L     ++D  +       P L A  ++     G  + A  FF+ + K  G       
Sbjct: 641 SSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHG--NAALHFFAWVGKQNGFCQTTET 698

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           Y M + + GRG  F    +   EM   G 
Sbjct: 699 YNMAMKVSGRGKDFKHMRSLFYEMRRRGF 727


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 150/309 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    T + +I+ +GK G ++    +FN+     C   ++ YN L+   C+ + 
Sbjct: 256 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+     M   G  P+  TY+ L++A+C  G M+ A + L +M   G  P       
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTS 375

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AG L  A +++N M++ G  L++ T+ +L++ +CK+G +    E++ S+ K G
Sbjct: 376 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 435

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  L+    KA  +++A ++L  + E   KP   LY  II G   + + ++  
Sbjct: 436 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 495

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EMK +G   N  + T +I    + G+  +A N+  EM ++G+      + ++ DGL
Sbjct: 496 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555

Query: 308 KNCGKHDLA 316
              G  +LA
Sbjct: 556 CEAGIVELA 564



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 141/319 (44%), Gaps = 8/319 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +      ++ + ++    K G      + FN          V  YN ++  LC+   
Sbjct: 186 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 245

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              +  L  +M   G  PD  TY  L++ +   G + E      EM D G  P +   + 
Sbjct: 246 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 305

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        +  A +  ++M   G   ++ T+++LI+  CK G ++  +++   + + G
Sbjct: 306 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  KAG + EA++LL+++++ G K     Y  ++ G+ + G+  +A 
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG- 306
             F  M   G  PN+ VYT L+    +  R  +A   L +MTE  + P     DL+  G 
Sbjct: 426 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKP-----DLILYGS 480

Query: 307 --LKNCGKHDLAEKIELLE 323
               +C +  L E   +LE
Sbjct: 481 IIWGHCSQRKLEETKLILE 499



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 139/300 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G +  A ++ N       +  ++ Y +LL  LC+      A  + R M
Sbjct: 372 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 431

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+++ Y  LV+ +  + +M +A + L++M++    P +     ++ G  +   L
Sbjct: 432 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 491

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  K ++ +M  +G   +     ++I+   K+G+    +  +  +  +G+ A + TY +L
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVL 551

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +AG+++ A      ++  G +P  ++Y  +I G+      + A   F EM+ +G 
Sbjct: 552 IDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGM 611

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +T LI    + G   EA   +  MTE+ +      +  +  G   CG+   A K
Sbjct: 612 TPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARK 671



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 116/266 (43%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +++ L     E+ L   A     RM     +P  R+   L++    SG  +  ++F  +M
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V   ++++  L   G LE+++++  +M + G   D+ T+NSLI+   K G +
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 281

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E    ++  +  +G   D+ TY  LI    K   +  AF     +  +G KP    Y+ +
Sbjct: 282 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTL 341

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + G    A     +M+  G  PN   YT LI    + G   EA   L +M + G+
Sbjct: 342 IDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGV 401

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
                 +  + DGL   G+   AE++
Sbjct: 402 KLNIVTYTALLDGLCKAGRMIEAEEV 427



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/277 (20%), Positives = 123/277 (44%), Gaps = 35/277 (12%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S + Q  + ++  + K   +++A+++  + T  N +  ++LY S+++  C  +      
Sbjct: 436 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 495

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M  +G   +      +++A+  +GK  +A  F QEM D G    +    +L+ GL
Sbjct: 496 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555

Query: 133 LNAGY-----------------------------------LESAKQMVNKMIKQGFVLDL 157
             AG                                    +ESAK++ ++M  +G   D+
Sbjct: 556 CEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDI 615

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             F +LI+   K G ++  + +   + +L +  D+  Y  L+   S+ G + +A +  + 
Sbjct: 616 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 675

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           ++E G  P   L   +++  ++RGQ D+A    +EM+
Sbjct: 676 MIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEME 712



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 93/210 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S +P   + II+ + K G   +A+  F +      +  ++ Y  L+  LCE
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCE 557

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +   A     RM+  G  P+   Y  L++  C +  +  A++   EM  +G  P +  
Sbjct: 558 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITA 617

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G L  G L+ A  ++++M +     DL  + SL+    + GE+    + +  + 
Sbjct: 618 FTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 677

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           + G+  +      L+    K G +DEA  L
Sbjct: 678 EKGILPEEVLCICLLREYYKRGQLDEAIEL 707


>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 475

 Score =  130 bits (328), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M       + +T +++I   G  GL    VE F K   FN +     YN++L 
Sbjct: 173 MWRLLDEMVENGFPTTARTFNILICTCGGAGLARKVVERFIKSKTFNYRPFKHSYNAILL 232

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  ++ +     + ++M+ +G+ PD  TY IL+ A    GK+      L EM   GF+P
Sbjct: 233 SLLAIREYKLIEWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSP 292

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A +++N M + GF   +  F +LI+ + ++G ++ C   +
Sbjct: 293 DFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFF 352

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     AG +++A  +   ++  G  P    Y  +I+G+   
Sbjct: 353 DEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMA 412

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F++A C   EM  +G  PN  VY  L+      G+  EA   + EM E G
Sbjct: 413 GKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGKLSEAREVIKEMAENG 464



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 123/300 (41%), Gaps = 39/300 (13%)

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +FA CE   F   + L+  M+  GF    RT+ IL+     +G  R+  E   +     +
Sbjct: 163 IFADCEE--FKAMWRLLDEMVENGFPTTARTFNILICTCGGAGLARKVVERFIKSKTFNY 220

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P     + ++  LL     +  + +  +M+ +G+  D  T+N L+    + G++     
Sbjct: 221 RPFKHSYNAILLSLLAIREYKLIEWVHQQMLVEGYCPDTLTYNILMCAKYRLGKLHHFHR 280

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G   D  TY IL+  + K      A +LL+++ E G  P    +  +I G+ 
Sbjct: 281 LLDEMGRSGFSPDFHTYNILLHVLGKGNKPIAALKLLNHMKEIGFDPSILHFTTLIDGLS 340

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-----------------MCGRG------ 275
           R G  D    FF EM   G  P+   YT++IT                 M  RG      
Sbjct: 341 RAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARGQLPNVF 400

Query: 276 ------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                       G+F EA   L EM   G  P    ++ + + L+N GK  L+E  E+++
Sbjct: 401 TYNSMIRGLCMAGKFEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGK--LSEAREVIK 458


>gi|224088126|ref|XP_002308333.1| predicted protein [Populus trichocarpa]
 gi|222854309|gb|EEE91856.1| predicted protein [Populus trichocarpa]
          Length = 1048

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 3/314 (0%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK- 66
            M+     + P T +++I ++G+ GL + A+++F +  A  C      Y  L+  LC  K 
Sbjct: 722  MRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKG 781

Query: 67   -LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A  + R MIR G VPDK      +   C  GK+ EA++ +  +   GF  P    
Sbjct: 782  RKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPA-SY 840

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L ++ L  AG LE A  +V+++  +   LD  T  SL+  + + G +E  +    S+ +
Sbjct: 841  SLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQ 900

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            +G+   V  Y  LI    +  +  +A  +  ++ ++G +P    Y+ +I+G        +
Sbjct: 901  VGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIE 960

Query: 246  AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            A+  F  +K KG  P+   Y+M ++   R G+  EA   L +M + G+ P +  F  V  
Sbjct: 961  AWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFF 1020

Query: 306  GLKNCGKHDLAEKI 319
            GL   GK  LA+ +
Sbjct: 1021 GLNREGKQSLAQTV 1034



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 127/298 (42%), Gaps = 1/298 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+ Y+     +T +++I+++GK  LV  A+ V  K     C+  V +Y   L +LC+
Sbjct: 227 LEEMEKYSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCD 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  + + M+++   P+   Y +L+N    SG +   Q    +M      P    
Sbjct: 287 AGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDV 346

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +++    AG +  A +++  +  +   LD E   +L++ + ++  +   +E+   + 
Sbjct: 347 HVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEI-VEIM 405

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K     D   Y I+I    +   + +A  L  ++ E GH P  S Y  +++ +FR  ++ 
Sbjct: 406 KRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQ 465

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
                + EM  +G   +      ++    R     EA      M + G+ P  + + +
Sbjct: 466 KCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSI 523



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/265 (22%), Positives = 116/265 (43%), Gaps = 8/265 (3%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
            +VD  +E   K   ++C++ +  +  L+    + KL   A  +  +M + G  PD   Y
Sbjct: 221 SVVDVLLEEMEK---YSCERDIKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVY 277

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            + +++ C +GK   A E  +EM  +   P +    +L+  L  +G + + + + + MI+
Sbjct: 278 EVTLHSLCDAGKGEIALEIYKEMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIR 337

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              + + +    ++++ C +G +   +E+   +    +  D    + L+  +S+A  I +
Sbjct: 338 VSQIPEHDVHVCVLKSYCVAGRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIAD 397

Query: 211 AFRLLHNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           A  ++  +     K F    +Y  II G  RR +   A   F  MK  GH P    YT L
Sbjct: 398 ALEIVEIM---KRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTEL 454

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           +    R   + +      EM E G+
Sbjct: 455 MQHLFRSNEYQKCCELYDEMLERGV 479



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 128/299 (42%), Gaps = 9/299 (3%)

Query: 2   WKTIE-LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSL 58
           W  I+  ++   +  +P+ ++  +   G HG  + A+  F      N  CQ     YN  
Sbjct: 646 WPIIQDALEKCTIQFTPELVAETLRNCGMHG--NAALHFFAWVGKQNGFCQ-TTETYNMA 702

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +      K F    +L   M R+GF+    T+AI++  +  +G    A +   EM   G 
Sbjct: 703 MKVSGRGKDFKHMRSLFYEMRRRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGC 762

Query: 119 NPPVRGRDLLVQGL--LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           NP       L+  L       ++ A ++  +MI+ G V D E   + +  +C+ G++   
Sbjct: 763 NPNDSTYKYLIIFLCGRKGRKVDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEA 822

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +   S+CK G     S Y + I A+ +AGM++EA  L+  +  +        +A ++ G
Sbjct: 823 RKSVDSLCKAGFTVPAS-YSLYIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHG 881

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + ++G+ ++A      MK  G  P   VYT LI    R     +A      M + G  P
Sbjct: 882 LLQKGRLEEALAKVDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEP 940



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 7/220 (3%)

Query: 66  KLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPP 121
           K+ H AY     +  + GF    +TY  ++    ++G+ RE       L+EM        
Sbjct: 182 KVPHLAYRFFNWVKTKDGFCHTTKTYNTMLY---TAGEAREFSVVDVLLEEMEKYSCERD 238

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           ++   +L+Q    A  +  A  +  KM K G   D+E +   + ++C +G+ E  +E+Y 
Sbjct: 239 IKTWTILIQQYGKAKLVGKALLVHEKMRKSGCEPDVEVYEVTLHSLCDAGKGEIALEIYK 298

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  ++S YK+L+  ++K+G +     +  +++     P   ++  ++K     G
Sbjct: 299 EMVQREMEPNLSLYKMLLNCLAKSGDVSAVQSVADDMIRVSQIPEHDVHVCVLKSYCVAG 358

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           +  +A     ++K K    +  V   L+    R  R  +A
Sbjct: 359 RIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADA 398



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 57/116 (49%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            ++ MK   ++ +    + +I  F +  L   A+E+F       C+  ++ Y++L+    +
Sbjct: 895  VDSMKQVGINPTVHVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMD 954

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             +    A+ +   +  KG  PD +TY++ ++  C +GK  EA + L +M D G  P
Sbjct: 955  TENVIEAWNVFHSLKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVP 1010



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/215 (19%), Positives = 90/215 (41%), Gaps = 1/215 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A+E+         Q    +  +L+  L        A  ++  M RK FV D + Y
Sbjct: 358 GRIREALELIRDLKNKEIQLDYEVSETLVKGLSRANRIADALEIVEIMKRKDFV-DGKVY 416

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++N +    ++ +A +  Q M + G  P       L+Q L  +   +   ++ ++M++
Sbjct: 417 GIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFRSNEYQKCCELYDEMLE 476

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G  +D     +++    +   +    E++ ++   G+     +Y I I  + K    DE
Sbjct: 477 RGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKSYSIFIKELCKVLRTDE 536

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             ++L  +          ++  +I  M R+G+ D+
Sbjct: 537 IIKVLGKMQASKMFICDEIFEWVISCMERKGEMDN 571



 Score = 43.9 bits (102), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 65/329 (19%), Positives = 117/329 (35%), Gaps = 43/329 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+MK  +  V  +   +II  + +   +  A+++F     F        Y  L+  L  
Sbjct: 402 VEIMKRKDF-VDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTSTYTELMQHLFR 460

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +     L   M+ +G   D      +V        + EA E  + M DKG  P  + 
Sbjct: 461 SNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETMEDKGIKPTWKS 520

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC--VEMYYS 182
             + ++ L      +   +++ KM      +  E F  +I  + + GE++    V+  + 
Sbjct: 521 YSIFIKELCKVLRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMDNIRKVKQMHR 580

Query: 183 VCKLGLCADVSTYKIL------------------------IPAVSKA---GMIDEAFRLL 215
           +C+L    D  T   L                        +  +SKA     + E  R+L
Sbjct: 581 ICRLHSLNDEVTRNDLSREEELHVDSNCNESVQGRVDWNSVKPLSKAYDEQDLQEVLRIL 640

Query: 216 HNL-----VEDGHKP-----FPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKGHPPNRPV 264
            +L     ++D  +       P L A  ++     G  + A  FF+ + K  G       
Sbjct: 641 SSLEDWPIIQDALEKCTIQFTPELVAETLRNCGMHG--NAALHFFAWVGKQNGFCQTTET 698

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           Y M + + GRG  F    +   EM   G 
Sbjct: 699 YNMAMKVSGRGKDFKHMRSLFYEMRRRGF 727


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  130 bits (327), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+  +   L+ ++    K G   +AVE++ +         ++  N+L+  LC+      A
Sbjct: 451 NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEA 510

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+++M+ +GFV DK TY  L++  C  GK+ E  +   EM  +G  P     +LL+ G
Sbjct: 511 VRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 570

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           +   G L+ A  + N+   +  V ++ T+  +I+  CK+ ++E   +++  +    L  +
Sbjct: 571 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELN 630

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI A  + G   EAF+L  ++   G  P  + Y+ +I GM   G+ +DA C   
Sbjct: 631 SVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLID 690

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ +G  PN   YT LI    + G+  +  N L EM+   + P    + ++ DG    G
Sbjct: 691 EMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSG 750

Query: 312 KHDLAEKI 319
               A K+
Sbjct: 751 DMKTAAKL 758



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ II+ F K G ++ A  +  +  +         + +++  LC    F  A   +R M
Sbjct: 388 TLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREM 447

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   P+      LV   C  GK  +A E    + +KGF   +   + L+ GL   G +
Sbjct: 448 LLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 507

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++ KM+++GFVLD  T+N+LI   CK G+VE   ++   + K G+  D  TY +L
Sbjct: 508 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 567

Query: 199 IPAVSKAGMIDEAFRLLH------------------------NLVEDGHKPFPSL----- 229
           I  + + G +DEA  L +                        + +E+G K F  L     
Sbjct: 568 IHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 627

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  +I+   R G   +AF    +M+ KG PP    Y+ LI      GR  +A  
Sbjct: 628 ELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKC 687

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            + EM + GL P   C+  +  G    G+ D
Sbjct: 688 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 718



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 134/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +  AV +  K          + YN+L+   C+       + L   M
Sbjct: 493 TTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM 552

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY +L++  C  GK+ EA     E   +   P V    +++ G   A  +
Sbjct: 553 VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKI 612

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  +++  +++ Q   L+   +N+LI   C++G      +++  +   G+    +TY  L
Sbjct: 613 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 672

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G +++A  L+  + ++G  P    Y  +I G  + GQ D       EM     
Sbjct: 673 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 732

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN+  YT++I    + G    AA  L EM   G+ P +  ++++T+G    GK +   K
Sbjct: 733 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFK 792

Query: 319 I 319
           I
Sbjct: 793 I 793



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 118/251 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I    + G +D AV ++N+C + +    V  Y  ++   C+         L   +
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 622

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +    +   Y  L+ A+C +G   EA +   +M  KG  P       L+ G+ N G +
Sbjct: 623 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 682

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK ++++M K+G + ++  + +LI   CK G+++  V +   +    +  +  TY ++
Sbjct: 683 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 742

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK+G +  A +LLH +V  G  P    Y  +  G  + G+ ++ F     M  +G 
Sbjct: 743 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802

Query: 259 PPNRPVYTMLI 269
           P +   YT L+
Sbjct: 803 PLDEITYTTLV 813



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 39/353 (11%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L VSP   T + +I    KHG +D A     K         ++ Y+ L+  L +++ F+ 
Sbjct: 275 LGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNE 334

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSG----------------------------- 101
           A ++++  + KGF P++  Y  L++ +C  G                             
Sbjct: 335 ANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ 394

Query: 102 ------KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                 +M +A+  L+EM  +GF+        ++  L      ESA + + +M+ +    
Sbjct: 395 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 454

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +     +L+  +CK G+    VE+++ + + G  A++ T   LI  + K G + EA RLL
Sbjct: 455 NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLL 514

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E G       Y  +I G  + G+ ++ F    EM  +G  P+   Y +LI    R 
Sbjct: 515 KKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRI 574

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
           G+  EA N   E     L P    + ++ DG     K +  EK+  ELL  +L
Sbjct: 575 GKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 627



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 11/291 (3%)

Query: 35  NAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           NA+ VF    NK      + C  L +SL+ A         +Y +   M R+G  PD   +
Sbjct: 195 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKA----NELEKSYWVFETM-RQGVSPDVYLF 249

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +  +NA+C  GK+ +A +   +M   G +P V   + L+ GL   G L+ A +   KM+K
Sbjct: 250 STAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 309

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G    L T++ LI  + K  +      +     + G   +   Y  LI    K G + +
Sbjct: 310 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 369

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A R+  ++V  G  P       II+G  + GQ + A C   EM  +G   N   +T +I 
Sbjct: 370 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIH 429

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 RF  A  +L EM    + P       +  GL   GKH  ++ +EL
Sbjct: 430 WLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH--SDAVEL 478



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 2/281 (0%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     S  I  F K G V++A+++F           V+ YN+L+  LC+      A+
Sbjct: 242 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 301

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M++ G      TY++L+N      K  EA   L+E  +KGF P     + L+ G 
Sbjct: 302 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 361

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L  A ++   M+ +G   +  T NS+I+  CK G++E    +   +   G   + 
Sbjct: 362 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 421

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             +  +I  +      + A R L  ++    +P   L   ++ G+ + G+  DA   +  
Sbjct: 422 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 481

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +  KG   N      LI    + G   EA   L +M E G 
Sbjct: 482 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 92/188 (48%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL ++    + +I  + ++G    A ++ +   +         Y+SL+  +C +     A
Sbjct: 626 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 685

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             LI  M ++G +P+   Y  L+  +C  G+M +    LQEMS    +P      +++ G
Sbjct: 686 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 745

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              +G +++A +++++M+ +G V D  T+N L    CK G++E   ++   + + GL  D
Sbjct: 746 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLD 805

Query: 192 VSTYKILI 199
             TY  L+
Sbjct: 806 EITYTTLV 813



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 105/228 (46%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K  +L  +  T  ++I+ + K   ++   ++F +    N +   ++YN+L+ A C     
Sbjct: 588 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ L   M  KG  P   TY+ L++  C+ G+M +A+  + EM  +G  P V     L
Sbjct: 648 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 707

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G ++    ++ +M       +  T+  +I+   KSG+++   ++ + +   G+
Sbjct: 708 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 767

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             D  TY +L     K G I+E F++   + ++G       Y  ++ G
Sbjct: 768 VPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLVHG 815


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 142/289 (49%), Gaps = 3/289 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    +   ++ A ++  +     C     +YN+L+    + K F  A+  +  M
Sbjct: 44  TFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM 103

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++   +P   TY  +V+  C + + R+A + L EM DKG +P +   +++V+GL     L
Sbjct: 104 VKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKL 163

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK+M+ +M  +G+  D+ T+NS I+ +CK   V+   E    + ++ +  DV +Y  +
Sbjct: 164 DEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVD---EARKFLARMPVTPDVVSYTTV 220

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +D A R+L ++   G  P    Y+ +I G  + G+ + A      M   G 
Sbjct: 221 INGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGC 280

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  L+    R G   +A + LVEM   G TP    ++   DGL
Sbjct: 281 RPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGL 329



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 130/274 (47%), Gaps = 15/274 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++   K     +AV++ ++     C   +  YN ++  LCE +    A  ++  M
Sbjct: 114 TYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM 173

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G+ PD  TY   +   C   ++ EA++FL  M      P V     ++ GL  +G L
Sbjct: 174 AVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDL 230

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +M++ M  +G   D+ T++SLI+  CK GEVE  + +  S+ KLG   ++  Y  L
Sbjct: 231 DSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSL 290

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ + G I +A  +L  +   G  P    Y   I G+ +  +   A   F  M  +G 
Sbjct: 291 LGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGC 350

Query: 259 PPNRPVYTMLIT-----------MCGRGGRFVEA 281
            PN   Y+MLI            +C +GGRF EA
Sbjct: 351 TPNASSYSMLIVDILLYTVLLDGLC-KGGRFDEA 383



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 151/370 (40%), Gaps = 50/370 (13%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    S +  T ++I+E   +   +D A ++  +         V+ YNS +  L
Sbjct: 133 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A   + RM      PD  +Y  ++N  C SG +  A   L  MS++G  P V
Sbjct: 193 CKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDV 249

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G +E A  +++ M+K G   ++  +NSL+  + + G +    +M   
Sbjct: 250 VTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVE 309

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS----------LYAP 232
           + + G   DV +Y   I  + KA  + +A  +   +VE G  P  S          LY  
Sbjct: 310 MERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTV 369

Query: 233 IIKGMFRRGQFDDAFCFFSE-MKIKGHPPNRPVYT-MLITMCGR---------------- 274
           ++ G+ + G+FD+A   FS+ +  K   P+   Y  ML + C R                
Sbjct: 370 LLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEK 429

Query: 275 -----------------GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
                              R  +A   L+ M + G  P    +  + D +  CGK   A 
Sbjct: 430 NCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKS--AA 487

Query: 318 KIELLEVSLR 327
            +EL E +++
Sbjct: 488 ALELFEEAVK 497



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 5/276 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN LL  L        A A+ + MI K   PD  T+AIL+   C S ++ +A++ L 
Sbjct: 7   VFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLG 66

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M + G  P     + L+ G   A     A + + +M+K   +  + T+ ++++ +CK+ 
Sbjct: 67  RMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                V++   +   G   ++ TY +++  + +   +DEA ++L  +   G+ P    Y 
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYN 186

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             IKG+ +  + D+A  F + M +    P+   YT +I    + G    A+  L  M+  
Sbjct: 187 SFIKGLCKCDRVDEARKFLARMPV---TPDVVSYTTVINGLCKSGDLDSASRMLDHMSNR 243

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           G TP    +  + DG   C   ++   + LL+  L+
Sbjct: 244 GCTPDVVTYSSLIDGF--CKGGEVERAMGLLDSMLK 277



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 144/323 (44%), Gaps = 14/323 (4%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N   +P   T S +I+ F K G V+ A+ + +      C+  ++ YNSLL AL  +    
Sbjct: 242 NRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIG 301

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  ++  M R+GF PD  +Y   ++  C + ++++A+     M ++G  P      +L+
Sbjct: 302 KAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLI 361

Query: 130 ----------QGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVE 178
                      GL   G  + A  + +K++ +     D+  +N ++++ CK  +++  ++
Sbjct: 362 VDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQ 421

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  + +   C +V T+ IL+  +     + +A  +L  +V++G  P    Y  ++  M 
Sbjct: 422 IHKQMLEKN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMC 480

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           + G+   A   F E    G  P+   Y+ LIT         EA     ++ E    P  +
Sbjct: 481 KCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDK 540

Query: 299 CFDLVTDGLKNCGKHDLAEKIEL 321
              L+   LK   K   AE ++L
Sbjct: 541 TLGLLHRKLKLLNKPRKAEVVDL 563



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 11/242 (4%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G+  +  TY  L+       +  +A    QEM DK   P      +L++GL  +  LE A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFCVEMYYSVCKLGLCADVSTYKI 197
           ++++ +M + G V D   +N+LI    K+ +     +F  EM  + C       V TY  
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHC----LPTVVTYTN 117

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + KA    +A +LL  + + G  P    Y  I++G+    + D+A     EM ++G
Sbjct: 118 IVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           + P+   Y   I    +  R  EA  +L  M    +TP    +  V +GL   G  D A 
Sbjct: 178 YFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSAS 234

Query: 318 KI 319
           ++
Sbjct: 235 RM 236



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +G   +V TY  L+  +++    D+A  +   +++   +P    +A +++G+ R  Q + 
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      MK  G  P+  +Y  LI+   +   F +A  +L EM +    P    +  + D
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD 120

Query: 306 GLKNCGKHDLAEKIELLE 323
           GL  C      + ++LL+
Sbjct: 121 GL--CKAERTRDAVKLLD 136


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 146/325 (44%), Gaps = 2/325 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M   N  V   T+ ++++   K G V++  ++  K     C   ++ YN+L+   
Sbjct: 158 KVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGY 217

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L + +  KGF+P  +TY  ++N +C  GK     + L EMS++G +  +
Sbjct: 218 CKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSI 277

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++      G    A   V  MIK G   D+ T+N LI   C  GEV    ++   
Sbjct: 278 HIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQ 337

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             K GL  +  +Y  LI    K G    A  LL  + E GHKP    YA +I G+   G+
Sbjct: 338 AIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGE 397

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A    ++M  KG  P+  +Y +L++   + GR   A   L EM +  + P +     
Sbjct: 398 VDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITAT 457

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLR 327
           + DG    G  D  E  +L E+++ 
Sbjct: 458 LVDGFIRHG--DFEEAKKLFELTIE 480



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 136/320 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L VS    + II+   KHG    A +         C   +  YN L+   C    
Sbjct: 268 MSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGE 327

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            H A  L+ + I++G +P+K +Y  L++ +C  G+   A + L +MS++G  P +     
Sbjct: 328 VHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAA 387

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL+ AG ++ A  + NKM+++G + D   +N L+  +CK G +     +   +    
Sbjct: 388 LIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQN 447

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D      L+    + G  +EA +L    +E G  P    Y  +IKG  + G   DA 
Sbjct: 448 VAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDAL 507

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M    H P+   Y+ +I    +      A      M +    P    + L+ +G 
Sbjct: 508 LCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGF 567

Query: 308 KNCGKHDLAEKIELLEVSLR 327
              G  + AEK     +SLR
Sbjct: 568 CLSGDINRAEKTFKQMLSLR 587



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 142/313 (45%), Gaps = 1/313 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALC 63
           +++MK  +L  + +  SL+I  F   GLVD A+E +       +C   V   NSLL  L 
Sbjct: 89  LKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLV 148

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  +   M+ +    D  T  I+V   C  GK+ +  + +++   +G  P + 
Sbjct: 149 KHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIV 208

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ G    G  E A  +  ++  +GF+  ++T+ ++I   CK G+ E   ++   +
Sbjct: 209 FYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEM 268

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            + GL   +  Y  +I A  K G   EA   +  +++ G  P  + Y  +I G    G+ 
Sbjct: 269 SERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITGSCSCGEV 328

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A     +   +G  PN+  YT LI    + G ++ A + L++M+E G  P    +  +
Sbjct: 329 HKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAAL 388

Query: 304 TDGLKNCGKHDLA 316
             GL   G+ D+A
Sbjct: 389 IHGLIVAGEVDVA 401



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 102/241 (42%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+   C+   +  A  L+ +M  +G  PD  TYA L++    +G++  A     +M 
Sbjct: 350 YTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMV 409

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KG  P     ++L+ GL   G L +AK ++ +M+ Q    D     +L++   + G+ E
Sbjct: 410 EKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFE 469

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +++    + G+   V  Y  +I    K GM+ +A      +++  H P    Y+ II
Sbjct: 470 EAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTII 529

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +      A   F  M      PN   YT+LI      G    A     +M  + L 
Sbjct: 530 DGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLK 589

Query: 295 P 295
           P
Sbjct: 590 P 590



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 3/265 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G VD A+ V NK           +YN L+  LC+      A  L+  M+ +   PD    
Sbjct: 396 GEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFIT 455

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           A LV+ +   G   EA++  +   +KG +P V G + +++G    G ++ A     +MI+
Sbjct: 456 ATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQ 515

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                D  T++++I+   K  ++   + M+  + K     +V TY +LI     +G I+ 
Sbjct: 516 GLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINR 575

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG-QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           A +    ++    KP    Y  +I G F +G     A  FF +M ++   PN   Y  L+
Sbjct: 576 AEKTFKQMLSLRLKPNVVTYTILI-GCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLM 634

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLT 294
                   FV  +N   E TE  L 
Sbjct: 635 NGLTNNVDFV-ISNQRSEQTENSLV 658



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 120/261 (45%), Gaps = 3/261 (1%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE-MSDKGFNPPVRGRD 126
           F    +L++ M  K  +P +  ++++++ +   G +  A EF +  +      P V   +
Sbjct: 82  FSEVESLLKIMKSKDLMPTREAFSLVISVFADCGLVDRALEFYRTFIKIHHCVPDVFSCN 141

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+  L+  G +E A ++ ++M+ +   +D  T   +++ +CK G+VE   ++       
Sbjct: 142 SLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMVKGLCKEGKVEDGWKLIEKRWGR 201

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   ++  Y  LI    K G  + A  L   L   G  P    Y  II G  ++G+F+  
Sbjct: 202 GCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVV 261

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EM  +G   +  +Y  +I    + G  +EAA+ +  M + G  P    ++++  G
Sbjct: 262 DKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADTVGWMIKSGCDPDMATYNILITG 321

Query: 307 LKNCGKHDLAEKIELLEVSLR 327
             +CG+   AE  +LLE +++
Sbjct: 322 SCSCGEVHKAE--QLLEQAIK 340



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 69/158 (43%), Gaps = 2/158 (1%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +V+P     + +++ F +HG  + A ++F           V+ YN+++   C+  +   A
Sbjct: 447 NVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDA 506

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
               +RMI+    PD+ TY+ +++ +     +  A      M      P V    LL+ G
Sbjct: 507 LLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLING 566

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
              +G +  A++   +M+      ++ T+  LI   CK
Sbjct: 567 FCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCK 604



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ-EM 113
           YNS+L  LC+ K+   A  L  +M+ KGF+PD  +   L++  C  G+ ++    +  ++
Sbjct: 677 YNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVISCKL 736

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
           +++     V+  + L    L+ G    A  +++ +  Q F L +E  ++L
Sbjct: 737 NERELQVAVKYSEKL-DAFLSQGQTSEASLILHSLADQ-FSLQMEEVDNL 784


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 143/291 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    ++ Y+SL+   C       A  +   M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  +Y+ L+  +C + ++ E  E  +EMS +G          L+QGL  AG  
Sbjct: 388 VSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDC 447

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G   ++ T+N+L++ +CK+G++E  + ++  + +  +   + TY I+
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  NL   G KP    Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGT 567

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            PN   Y  LI    R G    +A  + EM   G    +    LVT+ L +
Sbjct: 568 LPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 618



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 154/336 (45%), Gaps = 36/336 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II+   K+  +D+A+ +F +      +  V+ Y+SL+  LC    +  A  L+  MI 
Sbjct: 260 TTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE 319

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ 
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AKQM   M+ +    D+ ++++LI+  CK+  V+  +E++  + + GL  +  TY  LI 
Sbjct: 380 AKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQ 439

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPF---------------------------------P 227
            + +AG  D A  +   +V DG  P                                  P
Sbjct: 440 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 499

Query: 228 SLYA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           ++Y    +I+GM + G+ +D +  F  + +KG  P+   Y  +I+   R G   EA    
Sbjct: 500 TIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALF 559

Query: 286 VEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
            EM E G  P S C++ L+   L++  +   AE I+
Sbjct: 560 KEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 133/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G  D A  + NK      +  VL+Y +++  LC+ K    A  L + M
Sbjct: 223 TYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEM 282

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L++  C+ G+  +A   L +M ++  NP V     L+   +  G L
Sbjct: 283 ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 342

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++M+K+     + T++SLI   C    ++   +M+  +       DV +Y  L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +DE   L   + + G       Y  +I+G+F+ G  D A   F EM   G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           PPN   Y  L+    + G+  +A      +    + P    ++++ +G+   GK
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 25  EEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           E+  ++GL    +D+AV +F +         ++ ++ LL A+ ++  F    +L  +M  
Sbjct: 50  EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   +  TY+IL+N +C   ++  A   L +M   G+ P +     L+ G  ++  +  
Sbjct: 110 LGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISE 169

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +V++M   G+  +  TFN+LI  +    +    V +   +   G   D+ TY +++ 
Sbjct: 170 AVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVN 229

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G  D AF LL+ + +   +P   +Y  II G+ +    DDA   F EM+ KG  P
Sbjct: 230 GLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRP 289

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           N   Y+ LI+     GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 290 NVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 348



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 6/279 (2%)

Query: 3   KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K +E  K Y+     S+ P   T S +I  F  H  +D A ++F    + +C   V+ Y+
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYS 400

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C+ K       L R M ++G V +  TY  L+     +G    AQE  +EM   
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSD 460

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+ GL   G LE A  +   + +      + T+N +IE +CK+G+VE  
Sbjct: 461 GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +++ ++   G+  DV  Y  +I    + G  +EA  L   + EDG  P    Y  +I+ 
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRA 580

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             R G  + +     EM+  G   +     ++  M   G
Sbjct: 581 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 619



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 130/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++  A  CQ  ++ Y  ++  LC+      A+ L+ +M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKM 247

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    P    Y  +++  C +  M +A    +EM  KG  P V     L+  L N G  
Sbjct: 248 EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRW 307

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    D+ TF++LI+   K G++    ++Y  + K  +   + TY  L
Sbjct: 308 SDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSL 367

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA ++   +V     P    Y+ +IKG  +  + D+    F EM  +G 
Sbjct: 368 INGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   YT LI    + G    A     EM   G+ P    ++ + DGL   GK + A
Sbjct: 428 VGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKA 485



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 130/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     +  AV + ++      Q   + +N+L+  L        A ALI RM
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY ++VN  C  G    A   L +M      P V     ++ GL    ++
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHM 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M  +G   ++ T++SLI  +C  G       +   + +  +  DV T+  L
Sbjct: 273 DDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSAL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G + EA +L   +V+    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 392

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ LI    +  R  E      EM++ GL   +  +  +  GL   G  D+A++
Sbjct: 393 FPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQE 452

Query: 319 I 319
           I
Sbjct: 453 I 453



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 81/192 (42%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L +  L+   L+ A  +  +M+K      +  F+ L+  I K  + +  + +   + 
Sbjct: 49  REKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ 108

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+  +  TY ILI    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 109 NLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRIS 168

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M + G+ PN   +  LI       +  EA   +  M   G  P    + +V 
Sbjct: 169 EAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVV 228

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 229 NGLCKRGDTDLA 240


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G +  A+ +            VL YN+L+   C +     A  L   M
Sbjct: 386 TYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEM 445

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY IL+N       +  A+EF  EM  KG  P     +  +   L  G  
Sbjct: 446 VEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDT 505

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+   M+ +G   D  T+N +I+ +CK+G ++   ++   +   GL  D  TY  L
Sbjct: 506 HKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCL 565

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  + G++ EA +LL+ +V DG +P    Y  +I    RRG    A+ +F +M   G 
Sbjct: 566 IHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGI 625

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +LI    R GR + A ++  EM E GL P    + L+ DG  NC + + A+ 
Sbjct: 626 EPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDG--NCREGNWADA 683

Query: 319 IEL 321
           I L
Sbjct: 684 IRL 686



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 1/250 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A E F++  +   Q     YN+ + A   +   H A+ L   M+ KG  PD  TY ++++
Sbjct: 473 AREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIID 532

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C +G +++A++   +M   G  P       L+      G L  A++++N M+  G   
Sbjct: 533 GLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQP 592

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            + T+  LI T C+ G +      +  +  +G+  +  TY +LI A+ + G    A+   
Sbjct: 593 SVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHF 652

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           H ++E G  P    Y  +I G  R G + DA   + EM   G PP+   +  L     +G
Sbjct: 653 HEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDKG 712

Query: 276 GRFVEAANYL 285
             +  A  YL
Sbjct: 713 HMY-HAIEYL 721



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 137/318 (43%), Gaps = 5/318 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALCEVKL 67
            L + P   T + +++ F K G  D A  +  +       C    + YN ++  L     
Sbjct: 236 QLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGH 295

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M R        TY  L+ A    G +++ +    EM ++G  P +   + 
Sbjct: 296 LENAAKLVDSM-RLSKKASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNA 354

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GLL +  +E+A+    +M   G + DL T+NS++   CK+G ++  + +   + + G
Sbjct: 355 IIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAG 414

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   V TY  LI    + G ++EA RL   +VE G  P    Y  ++ G  +      A 
Sbjct: 415 LAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAR 474

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            FF EM  KG  P+   Y   I      G   +A      M   G+ P +  ++++ DGL
Sbjct: 475 EFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGL 534

Query: 308 KNCGKHDLAEKIELLEVS 325
              G    A+ +++  VS
Sbjct: 535 CKTGNLKDAKDLKMKMVS 552



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 1/277 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + G ++NA ++ +     + +     YN L+ AL E        AL   M
Sbjct: 282 TYNVVISFLAREGHLENAAKLVDS-MRLSKKASSFTYNPLITALLERGFVQKVEALQMEM 340

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +P   TY  +++    S ++  AQ    EM   G  P +   + ++ G   AG L
Sbjct: 341 ENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNL 400

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++  + + G    + T+N+LI+  C+ G +E    +   + + G   DV TY IL
Sbjct: 401 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTIL 460

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K   +  A      ++  G +P    Y   I      G    AF     M +KG 
Sbjct: 461 MNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGI 520

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y ++I    + G   +A +  ++M   GL P
Sbjct: 521 YPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQP 557



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 91/201 (45%), Gaps = 1/201 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+   K G + +A ++  K  +   Q   + Y  L+ A CE  L   A  L+  M
Sbjct: 526 TYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGM 585

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P   TY IL++  C  G +  A  + ++M D G  P     ++L+  L   G  
Sbjct: 586 VSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRT 645

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A    ++M+++G   +  T+  LI+  C+ G     + +Y+ + + G+  D  T+  L
Sbjct: 646 LLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 705

Query: 199 IPAVSKAGMIDEAFRLLHNLV 219
                K G +  A   L N+V
Sbjct: 706 FKGFDK-GHMYHAIEYLENIV 725



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 3/250 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A  R +   G  PD R    ++     + +  + +   +EM      P +   + L+   
Sbjct: 194 AAFRVVACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSF 253

Query: 133 LNAGYLESAKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           L  G  + A  ++ +M  Q  G +L+  T+N +I  + + G +E   ++  S+ +L   A
Sbjct: 254 LKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSM-RLSKKA 312

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY  LI A+ + G + +   L   +  +G  P    Y  II G+ +  Q + A   F
Sbjct: 313 SSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKF 372

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +EM+  G  P+   Y  ++    + G   EA   L ++   GL P    ++ + DG    
Sbjct: 373 AEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRL 432

Query: 311 GKHDLAEKIE 320
           G  + A +++
Sbjct: 433 GGLEEARRLK 442



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  S  T +++I    + G + +A   F K      +   + YN L+ ALC       AY
Sbjct: 590 LQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAY 649

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
                M+ +G  P+K TY +L++  C  G   +A     EM   G  P     + L +G 
Sbjct: 650 HHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG- 708

Query: 133 LNAGYLESAKQMVNKMI 149
            + G++  A + +  ++
Sbjct: 709 FDKGHMYHAIEYLENIV 725


>gi|225439358|ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Vitis vinifera]
          Length = 1048

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 155/323 (47%), Gaps = 3/323 (0%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK- 66
            M+     V+P T +++I ++G+ GL + A+  F +  A +C+     Y  L+  LC  K 
Sbjct: 723  MRRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKYLIICLCGRKG 782

Query: 67   -LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A      MIR G+VPDK      +   C  GK+ +A+   + +   GF  P+   
Sbjct: 783  RKVDEAIKTFLEMIRAGYVPDKELVESYLKCLCEVGKLLDARRCTEALCKLGFTIPL-SY 841

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L ++ L  AG LE A  +V+++  +   LD   + SL+  + + G ++  +E   S+ +
Sbjct: 842  SLYIRALCRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQ 901

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            +G+   V  Y  LI    K   + +A      + E+G +P    Y+ +I+G    G F D
Sbjct: 902  IGIHPTVHVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVD 961

Query: 246  AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            A   F  +++KG  P+   Y+M I+   + G+  EA   L EM + G+ P +  F  V  
Sbjct: 962  ARNVFGLLQLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMF 1021

Query: 306  GLKNCGKHDLAEKIELLEVSLRS 328
            GL   GKH LA  +   +++L+S
Sbjct: 1022 GLNREGKHSLANIVLQKKLALKS 1044



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 62/302 (20%), Positives = 124/302 (41%), Gaps = 1/302 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++I  +GK  L+  A+ +  K     C+  V  Y  L+ +LC  +    A    + 
Sbjct: 241 KTWTILISHYGKAKLIGKALLILEKMWKSGCEPDVAAYMILIRSLCNAQKADIALEFYKE 300

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M++K    D   Y +L+     SG +   Q    +M  +   P       +++    AG 
Sbjct: 301 MVQKEMGLDMSLYELLLTCLAGSGDIAGVQLVADDMIRRSQIPERDVFSCMLKSFCIAGR 360

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A +++  +  +   L+   F +L++ +C++  +    E+   + K     D   Y I
Sbjct: 361 IREALELIRDLNDKNLTLEPNDFETLVKGLCRADRITDAAEI-VDIMKKRKVVDAKVYGI 419

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    +   I +AF +L  + E G+ P  S Y  +++ +FR  ++      + EM  +G
Sbjct: 420 IISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFRLNEYQKGCKLYDEMLERG 479

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+    T ++    R     EA      M E G+    + + +    L    + D   
Sbjct: 480 VEPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKSYSVFIKELCKISRTDEVI 539

Query: 318 KI 319
           K+
Sbjct: 540 KV 541



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 126/279 (45%), Gaps = 4/279 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+  I  E  + GLV+   ++  +     C++ +  +  L+    + KL   A  ++ +M
Sbjct: 210 TMLYIAGEAKEFGLVE---KLIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKM 266

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  PD   Y IL+ + C++ K   A EF +EM  K     +   +LL+  L  +G +
Sbjct: 267 WKSGCEPDVAAYMILIRSLCNAQKADIALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDI 326

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + + + MI++  + + + F+ ++++ C +G +   +E+   +    L  + + ++ L
Sbjct: 327 AGVQLVADDMIRRSQIPERDVFSCMLKSFCIAGRIREALELIRDLNDKNLTLEPNDFETL 386

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +A  I +A  ++ ++++        +Y  II G  RR     AF     M   G+
Sbjct: 387 VKGLCRADRITDAAEIV-DIMKKRKVVDAKVYGIIISGYLRRNDIPKAFDVLQTMTESGY 445

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            P    YT L+    R   + +      EM E G+ P S
Sbjct: 446 LPTISTYTELMQHLFRLNEYQKGCKLYDEMLERGVEPDS 484



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 1/241 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L+   E K F     LI  M  KG   D +T+ IL++ +  +  + +A   L++M 
Sbjct: 208 YNTMLYIAGEAKEFGLVEKLIGEMEEKGCKRDIKTWTILISHYGKAKLIGKALLILEKMW 267

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P V    +L++ L NA   + A +   +M+++   LD+  +  L+  +  SG++ 
Sbjct: 268 KSGCEPDVAAYMILIRSLCNAQKADIALEFYKEMVQKEMGLDMSLYELLLTCLAGSGDIA 327

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + +     +   +  ++ +   AG I EA  L+ +L +      P+ +  ++
Sbjct: 328 GVQLVADDMIRRSQIPERDVFSCMLKSFCIAGRIREALELIRDLNDKNLTLEPNDFETLV 387

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG+ R  +  DA      MK K    +  VY ++I+   R     +A + L  MTE G  
Sbjct: 388 KGLCRADRITDAAEIVDIMK-KRKVVDAKVYGIIISGYLRRNDIPKAFDVLQTMTESGYL 446

Query: 295 P 295
           P
Sbjct: 447 P 447



 Score = 44.7 bits (104), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 1/171 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   + V  +   +II  + +   +  A +V    T       +  Y  L+  L  
Sbjct: 403 VDIMKKRKV-VDAKVYGIIISGYLRRNDIPKAFDVLQTMTESGYLPTISTYTELMQHLFR 461

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +  +     L   M+ +G  PD      +V        + EA +    M ++G     + 
Sbjct: 462 LNEYQKGCKLYDEMLERGVEPDSVAITAMVAGHVRQNHIFEAWKVFNSMQERGIRATWKS 521

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
             + ++ L      +   +++N+M     ++  E FN +I  + K GE E 
Sbjct: 522 YSVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWVISYLEKKGETEM 572



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 212 FRLLHNLV----EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           FR + NL       GH   P  +  +I    R G  + A   F+EMK     PN   Y  
Sbjct: 713 FRSMRNLFFEMRRKGHPVTPDTWTIMIMQYGRAGLTEIALRNFAEMKANDCKPNGSTYKY 772

Query: 268 LIT-MCGRGGRFV-EAANYLVEMTEMGLTP 295
           LI  +CGR GR V EA    +EM   G  P
Sbjct: 773 LIICLCGRKGRKVDEAIKTFLEMIRAGYVP 802



 Score = 40.8 bits (94), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 30/168 (17%), Positives = 69/168 (41%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            ++ + P  +++       ++    + G +  A+E  +          V +Y SL+    +
Sbjct: 861  VDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTVHVYTSLIVHFFK 920

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             K    A    ++M  +G  P   TY+ L+    + G   +A+     +  KG  P  + 
Sbjct: 921  EKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGLLQLKGPFPDFKT 980

Query: 125  RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
              + +  L   G  E A Q++++M+  G +     F +++  + + G+
Sbjct: 981  YSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGK 1028


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 147/308 (47%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+  +   L+ ++    K G   +AVE++ +         ++  N+L+  LC+      A
Sbjct: 518 NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEA 577

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+++M+ +GFV DK TY  L++  C  GK+ E  +   EM  +G  P     +LL+ G
Sbjct: 578 VRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHG 637

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           +   G L+ A  + N+   +  V ++ T+  +I+  CK+ ++E   +++  +    L  +
Sbjct: 638 MCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELN 697

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI A  + G   EAF+L  ++   G  P  + Y+ +I GM   G+ +DA C   
Sbjct: 698 SVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLID 757

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ +G  PN   YT LI    + G+  +  N L EM+   + P    + ++ DG    G
Sbjct: 758 EMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSG 817

Query: 312 KHDLAEKI 319
               A K+
Sbjct: 818 DMKTAAKL 825



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ II+ F K G ++ A  +  +  +         + +++  LC    F  A   +R M
Sbjct: 455 TLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREM 514

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   P+      LV   C  GK  +A E    + +KGF   +   + L+ GL   G +
Sbjct: 515 LLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNM 574

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++ KM+++GFVLD  T+N+LI   CK G+VE   ++   + K G+  D  TY +L
Sbjct: 575 QEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLL 634

Query: 199 IPAVSKAGMIDEAFRLLH------------------------NLVEDGHKPFPSL----- 229
           I  + + G +DEA  L +                        + +E+G K F  L     
Sbjct: 635 IHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 694

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  +I+   R G   +AF    +M+ KG PP    Y+ LI      GR  +A  
Sbjct: 695 ELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKC 754

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            + EM + GL P   C+  +  G    G+ D
Sbjct: 755 LIDEMRKEGLLPNVVCYTALIGGYCKLGQMD 785



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 131/294 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +  AV +  K          + YN+L+   C+       + L   M
Sbjct: 560 TTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEM 619

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY +L++  C  GK+ EA     E   +   P V    +++ G   A  +
Sbjct: 620 VKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKI 679

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  +++  +++ Q   L+   +N+LI   C++G      +++  +   G+    +TY  L
Sbjct: 680 EEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSL 739

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G +++A  L+  + ++G  P    Y  +I G  + GQ D       EM     
Sbjct: 740 IHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDI 799

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN+  YT++I    + G    AA  L EM   G+ P +  ++++T+G    GK
Sbjct: 800 HPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGK 853



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 39/353 (11%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L VSP   T + +I    KHG +D A     K         ++ Y+ L+  L +++ F+ 
Sbjct: 342 LGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNE 401

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSG----------------------------- 101
           A ++++  + KGF P++  Y  L++ +C  G                             
Sbjct: 402 ANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQ 461

Query: 102 ------KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                 +M +A+  L+EM  +GF+        ++  L      ESA + + +M+ +    
Sbjct: 462 GFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 521

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +     +L+  +CK G+    VE+++ + + G  A++ T   LI  + K G + EA RLL
Sbjct: 522 NDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLL 581

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E G       Y  +I G  + G+ ++ F    EM  +G  P+   Y +LI    R 
Sbjct: 582 KKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRI 641

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
           G+  EA N   E     L P    + ++ DG     K +  EK+  ELL  +L
Sbjct: 642 GKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNL 694



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 11/291 (3%)

Query: 35  NAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           NA+ VF    NK      + C  L +SL+ A         +Y +   M R+G  PD   +
Sbjct: 262 NAIGVFRFLANKGVFPTVKTCTFLLSSLVKA----NELEKSYWVFETM-RQGVSPDVYLF 316

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +  +NA+C  GK+ +A +   +M   G +P V   + L+ GL   G L+ A +   KM+K
Sbjct: 317 STAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVK 376

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G    L T++ LI  + K  +      +     + G   +   Y  LI    K G + +
Sbjct: 377 DGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGD 436

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A R+  ++V  G  P       II+G  + GQ + A C   EM  +G   N   +T +I 
Sbjct: 437 ALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIH 496

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 RF  A  +L EM    + P       +  GL   GKH  ++ +EL
Sbjct: 497 WLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH--SDAVEL 545



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 2/281 (0%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     S  I  F K G V++A+++F           V+ YN+L+  LC+      A+
Sbjct: 309 VSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAF 368

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M++ G      TY++L+N      K  EA   L+E  +KGF P     + L+ G 
Sbjct: 369 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 428

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L  A ++   M+ +G   +  T NS+I+  CK G++E    +   +   G   + 
Sbjct: 429 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 488

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             +  +I  +      + A R L  ++    +P   L   ++ G+ + G+  DA   +  
Sbjct: 489 GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFR 548

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +  KG   N      LI    + G   EA   L +M E G 
Sbjct: 549 LLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 589



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 108/228 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I    + G +D AV ++N+C + +    V  Y  ++   C+         L   +
Sbjct: 630 TYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTEL 689

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +    +   Y  L+ A+C +G   EA +   +M  KG  P       L+ G+ N G +
Sbjct: 690 LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 749

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK ++++M K+G + ++  + +LI   CK G+++  V +   +    +  +  TY ++
Sbjct: 750 EDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVM 809

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           I   SK+G +  A +LLH +V  G  P    Y  +  G  + G+ ++ 
Sbjct: 810 IDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEG 857



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL ++    + +I  + ++G    A ++ +   +         Y+SL+  +C +     A
Sbjct: 693 NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDA 752

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             LI  M ++G +P+   Y  L+  +C  G+M +    LQEMS    +P      +++ G
Sbjct: 753 KCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDG 812

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
              +G +++A +++++M+ +G V D  T+N L    CK G++E
Sbjct: 813 YSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 855



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 4/214 (1%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K  +L  +  T  ++I+ + K   ++   ++F +    N +   ++YN+L+ A C     
Sbjct: 655 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 714

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ L   M  KG  P   TY+ L++  C+ G+M +A+  + EM  +G  P V     L
Sbjct: 715 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 774

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G ++    ++ +M       +  T+  +I+   KSG+++   ++ + +   G+
Sbjct: 775 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 834

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
             D  TY +L     K G I+E       L EDG
Sbjct: 835 VPDTVTYNVLTNGFCKEGKIEEG----KLLAEDG 864


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  130 bits (327), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 156/353 (44%), Gaps = 73/353 (20%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           + L+VSP   T +++I   G  G +D  +++F   TA  CQ  +  Y+S++ A       
Sbjct: 127 FKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRV 186

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR----- 123
             A  + ++M++KG  PD  TY IL++A+  +G++  A +F+ +   + F   V      
Sbjct: 187 DEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGK--SRSFTNEVTYNSLL 244

Query: 124 ---GRDLLVQGLLN--------------------------AGYLESAKQMVNKMIKQGFV 154
              GR   +QGL+                           AG +E   Q+  +M+     
Sbjct: 245 SSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIK 304

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T N++++ + K+G VE   E++  +   GL AD  TY ILI  + +AG +D A  L
Sbjct: 305 YDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGAL 364

Query: 215 LHNLVEDGHKP---------------------------------FPSL--YAPIIKGMFR 239
           L  + E+G  P                                  P++  Y+ +I+G  +
Sbjct: 365 LLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGK 424

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            G+ D A   F EMK +G PPN   Y +LI    R GRF  A  YL EM + G
Sbjct: 425 AGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 134/277 (48%), Gaps = 3/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K   V+ A  VF      N    V  Y  L+ +L  +        L   M
Sbjct: 102 TFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESM 161

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY  +++A+ S+G++ EA +  Q+M  KG  P     ++L+      G L
Sbjct: 162 TAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQL 221

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A   V K   + F  ++ T+NSL+ ++ + G+++  +E++  +   GL ++  TY IL
Sbjct: 222 ERAFDFVGK--SRSFTNEV-TYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAIL 278

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG +++ ++L   +V++  K        ++  + + G+ + AF  F +MK KG 
Sbjct: 279 IERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGL 338

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +   Y +LI   GR G+   A   L+EM E G  P
Sbjct: 339 NADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAP 375



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 38/286 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ FGK G ++ A +   K  +F  +   + YNSLL +L       G   L  +M
Sbjct: 207 TYNILIDAFGKTGQLERAFDFVGKSRSFTNE---VTYNSLLSSLGRKGDIQGLMELFGQM 263

Query: 79  IRKGFVPDKRTYAILV----------NAW-------------------------CSSGKM 103
             KG V ++ TYAIL+          + W                           +G++
Sbjct: 264 KAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRV 323

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
             A E  Q+M  KG N      ++L+ GL  AG L++A  ++ +M + G   ++ T+N+L
Sbjct: 324 EAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTL 383

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I +  K   +     ++  + + G+  +V +Y  LI    KAG  D A  L   +  +G 
Sbjct: 384 ISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGC 443

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            P    Y  +I  + R G+F  A  +  EM+  G    +   ++L+
Sbjct: 444 PPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLV 489



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 107/228 (46%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L   + +     L+  M +     D + +  L++ +  +  M +A + L   + +G
Sbjct: 1   MLTLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEG 60

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P       ++Q  +  G +++   M  +M+K  FV D  TFN LI+++ K+ +VE   
Sbjct: 61  GRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  + KL +  DV TY ILI ++   G ID   +L  ++   G +P    Y  ++   
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
              G+ D+A   F +M  KG  P+   Y +LI   G+ G+   A +++
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFV 228



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 116/295 (39%), Gaps = 32/295 (10%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L+N+L+    E  +   A   +    ++G  P   TY+ ++  +   G ++      ++M
Sbjct: 32  LFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQM 91

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
               F P     ++L+  L  A  +E A  +   M K     D+ T+  LI ++   G +
Sbjct: 92  LKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRI 151

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  ++++ S+   G   ++ TY  ++ A   AG +DEA  +   +V+ G +P    Y  +
Sbjct: 152 DAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNIL 211

Query: 234 IKGMFRRGQFDDAFCF--------------------------------FSEMKIKGHPPN 261
           I    + GQ + AF F                                F +MK KG   N
Sbjct: 212 IDAFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSN 271

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              Y +LI   G  GR  +     +EM +  +       + V D L   G+ + A
Sbjct: 272 ELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAA 326



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 101/215 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T +++IE  G  G V++  +++ +    + +  ++  N++L  L +   
Sbjct: 263 MKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGR 322

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L + M  KG   D  TY IL+N    +GK+  A   L EM + G  P +   + 
Sbjct: 323 VEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNT 382

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        L +A ++  +M ++G   ++ +++SLIE   K+G  +  + ++  +   G
Sbjct: 383 LISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEG 442

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
              +  TY +LI  + +AG    A   L  + + G
Sbjct: 443 CPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 35/213 (16%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFN-----------------------------------SL 163
           +  +++V  M K    LD + FN                                   S+
Sbjct: 12  DDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSM 71

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+   K G+V+  + MY  + K     D +T+ ILI +++KA  ++EA  +  ++ +   
Sbjct: 72  IQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNV 131

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I+ +   G+ D     F  M  +G  PN   Y  ++   G  GR  EA +
Sbjct: 132 SPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACD 191

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +M + GL P +  ++++ D     G+ + A
Sbjct: 192 IFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA 224



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 4/191 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W+    M   ++     T++ +++   K G V+ A E+F            + YN L+ 
Sbjct: 291 VWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILIN 350

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L        A AL+  M   G  P+  TY  L++++     +  A     EM ++G  P
Sbjct: 351 GLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAP 410

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFC 176
            V     L++G   AG  ++A  +  +M  +G   +  T+N LI+ + ++G     +E+ 
Sbjct: 411 NVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYL 470

Query: 177 VEMYYSVCKLG 187
            EM  + C++G
Sbjct: 471 REMRDAGCQMG 481



 Score = 45.8 bits (107), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +GK   +  A  +F +         V+ Y+SL+    +      A +L R M
Sbjct: 379 TYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREM 438

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY +L++    +G+   A E+L+EM D G       + LLV+  +   Y+
Sbjct: 439 KAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTKSLLVR--IPPQYM 496

Query: 139 ESAK 142
           E A+
Sbjct: 497 EEAQ 500


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 4/292 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    +  Y+SL+   C       A  +   M
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P+  TY  L+  +C + ++ E  E  +EMS +G        + L+QGL  AG  
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  KM+  G   D+ T++ L++ +CK G++E  + ++  + K  +  D+ TY I+
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  +L   G KP   +Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDG 306
            PN   Y  LI    R G    +A  + EM   G     + IS   +++ DG
Sbjct: 567 LPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 153/336 (45%), Gaps = 36/336 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II+    +  V++A+ +F +      +  V+ YNSL+  LC    +  A  L+  MI 
Sbjct: 259 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P+  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ 
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK M   MI +    ++ T+N+LI+  CK+  VE  +E++  + + GL  +  TY  LI 
Sbjct: 379 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPF---------------------------------P 227
            + +AG  D A ++   +V DG  P                                  P
Sbjct: 439 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498

Query: 228 SLYA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            +Y    +I+GM + G+ +D +  F  + +KG  PN  +YT +I+   R G   EA    
Sbjct: 499 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 558

Query: 286 VEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
            EM E G  P S  ++ L+   L++  K   AE I+
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 594



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++    K G +D A+ +  K      +  V++Y +++ ALC  K  + A  L   M
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+   C+ G+  +A   L +M ++  NP V     L+   +  G L
Sbjct: 282 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 341

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MIK+    D+ T++SLI   C    ++    M+  +       +V TY  L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  ++E   L   + + G       Y  +I+G+F+ G  D A   F +M   G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           PP+   Y++L+    + G+  +A      + +  + P    ++++ +G+   GK
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 515



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 132/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++  A  CQ  +  Y +++  LC+      A +L+++M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  +++A C+   + +A     EM +KG  P V   + L++ L N G  
Sbjct: 247 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 306

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TF++LI+   K G++    ++Y  + K  +  D+ TY  L
Sbjct: 307 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA  +   ++     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   Y  LI    + G    A     +M   G+ P    + ++ DGL   GK + A
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 128/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     +  AV + ++      Q   + +N+L+  L        A ALI RM
Sbjct: 152 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  +VN  C  G +  A   L++M        V     ++  L N   +
Sbjct: 212 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 271

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M  +G   ++ T+NSLI  +C  G       +   + +  +  +V T+  L
Sbjct: 272 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 331

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G + EA +L   +++    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI    +  R  E      EM++ GL   +  ++ +  GL   G  D+A+K
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 319 I 319
           I
Sbjct: 452 I 452



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A A++ +M++ G+ PD  T + L+N +C   ++ EA   + +M 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
              + P     + L+ GL        A  ++++M+ +G   DL T+ +++  +CK G+++
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + ADV  Y  +I A+     +++A  L   +   G +P    Y  +I
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           + +   G++ DA    S+M  +   PN   ++ LI    + G+ VEA     EM +  + 
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 295 P 295
           P
Sbjct: 358 P 358



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 125/287 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+AV++F +         ++ +N LL A+ ++  F    +L  RM       D  +Y I
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C   ++  A   L +M   G+ P +     L+ G  +   +  A  +V++M    
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  +  TFN+LI  +    +    V +   +   G   D+ TY  ++  + K G ID A 
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + +   +    +Y  II  +      +DA   F+EM  KG  PN   Y  LI   
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 80/192 (41%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L + +L    L+ A  +  +M++   +  +  FN L+  I K  + +  + +   + 
Sbjct: 48  REKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ 107

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            L +  D+ +Y ILI    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 108 NLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRIS 167

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M +  + PN   +  LI       +  EA   +  M   G  P    +  V 
Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 227

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 228 NGLCKRGDIDLA 239


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 4/292 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    +  Y+SL+   C       A  +   M
Sbjct: 311 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 370

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P+  TY  L+  +C + ++ E  E  +EMS +G        + L+QGL  AG  
Sbjct: 371 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 430

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  KM+  G   D+ T++ L++ +CK G++E  + ++  + K  +  D+ TY I+
Sbjct: 431 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  +L   G KP   +Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 550

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDG 306
            PN   Y  LI    R G    +A  + EM   G     + IS   +++ DG
Sbjct: 551 LPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 602



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 153/336 (45%), Gaps = 36/336 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II+    +  V++A+ +F +      +  V+ YNSL+  LC    +  A  L+  MI 
Sbjct: 243 TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE 302

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P+  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ 
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK M   MI +    ++ T+N+LI+  CK+  VE  +E++  + + GL  +  TY  LI 
Sbjct: 363 AKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 422

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPF---------------------------------P 227
            + +AG  D A ++   +V DG  P                                  P
Sbjct: 423 GLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 482

Query: 228 SLYA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            +Y    +I+GM + G+ +D +  F  + +KG  PN  +YT +I+   R G   EA    
Sbjct: 483 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALF 542

Query: 286 VEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
            EM E G  P S  ++ L+   L++  K   AE I+
Sbjct: 543 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIK 578



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 134/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++    K G +D A+ +  K      +  V++Y +++ ALC  K  + A  L   M
Sbjct: 206 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEM 265

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+   C+ G+  +A   L +M ++  NP V     L+   +  G L
Sbjct: 266 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 325

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MIK+    D+ T++SLI   C    ++    M+  +       +V TY  L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  ++E   L   + + G       Y  +I+G+F+ G  D A   F +M   G 
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           PP+   Y++L+    + G+  +A      + +  + P    ++++ +G+   GK
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK 499



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 132/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++  A  CQ  +  Y +++  LC+      A +L+++M
Sbjct: 171 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 230

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  +++A C+   + +A     EM +KG  P V   + L++ L N G  
Sbjct: 231 EKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 290

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TF++LI+   K G++    ++Y  + K  +  D+ TY  L
Sbjct: 291 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 350

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA  +   ++     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 351 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 410

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   Y  LI    + G    A     +M   G+ P    + ++ DGL   GK + A
Sbjct: 411 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 468



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 128/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     +  AV + ++      Q   + +N+L+  L        A ALI RM
Sbjct: 136 TLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 195

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  +VN  C  G +  A   L++M        V     ++  L N   +
Sbjct: 196 VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNV 255

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M  +G   ++ T+NSLI  +C  G       +   + +  +  +V T+  L
Sbjct: 256 NDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 315

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G + EA +L   +++    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 316 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 375

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI    +  R  E      EM++ GL   +  ++ +  GL   G  D+A+K
Sbjct: 376 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 435

Query: 319 I 319
           I
Sbjct: 436 I 436



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A A++ +M++ G+ PD  T + L+N +C   ++ EA   + +M 
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
              + P     + L+ GL        A  ++++M+ +G   DL T+ +++  +CK G+++
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 221

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + ADV  Y  +I A+     +++A  L   +   G +P    Y  +I
Sbjct: 222 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 281

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           + +   G++ DA    S+M  +   PN   ++ LI    + G+ VEA     EM +  + 
Sbjct: 282 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 341

Query: 295 P 295
           P
Sbjct: 342 P 342



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 125/287 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+AV++F +         ++ +N LL A+ ++  F    +L  RM       D  +Y I
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C   ++  A   L +M   G+ P +     L+ G  +   +  A  +V++M    
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  +  TFN+LI  +    +    V +   +   G   D+ TY  ++  + K G ID A 
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + +   +    +Y  II  +      +DA   F+EM  KG  PN   Y  LI   
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 331



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 80/192 (41%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L + +L    L+ A  +  +M++   +  +  FN L+  I K  + +  + +   + 
Sbjct: 32  REKLSRNVLLDLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQ 91

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            L +  D+ +Y ILI    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 92  NLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRIS 151

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M +  + PN   +  LI       +  EA   +  M   G  P    +  V 
Sbjct: 152 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 211

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 212 NGLCKRGDIDLA 223


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (327), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 5/316 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+ +   ++ +P   +  +    K G V  A+EV        C+  V+ +N+L+  LC+ 
Sbjct: 43  EMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKA 102

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M R GF  +  TY  L+N   S+G+  EA   +Q M+     P  +  
Sbjct: 103 GRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTY 159

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS-V 183
           + ++ G   +G ++ A   + +M ++ G   D  T++ LI  +CKS  +    E+    +
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +   CA V  +  L+    KA  +D A  LL +++E G  P    Y+ II G+ R G  
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D  F    +M  +G  P+   YT+L+T   + G+ VEA   +  M E G TP +  + LV
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 304 TDGLKNCGKHDLAEKI 319
            DGL    K D+A  +
Sbjct: 340 FDGLCKIDKLDMANDL 355



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 5/269 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+    + +  T + +I      G    AV V    T     Q    YN+++   
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQ---TYNAIIHGF 166

Query: 63  CEVKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNP 120
           C+      AY  +  M  R G  PD  TY+IL+N  C S  +R+A E LQEM   K    
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + LV G   A  L+ A+++++ M++ G   D+ T++++I+ +C+ G+V+    + 
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   DV TY +L+  + KAG + EA RL+  ++EDG  P    Y+ +  G+ + 
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKI 346

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            + D A    + ++ KG   +   +  L+
Sbjct: 347 DKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           D  TY +LV A C +G+++ A + L+EM  + G  P     +  V  L  +G +  A ++
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V  M       D+ TFN+LI  +CK+G ++   ++   + + G  A++ TY  LI  +S 
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPNRP 263
           AG   EA  ++  +      P    Y  II G  + G+ D A+ F  EMK + G  P+  
Sbjct: 137 AGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIELL 322
            Y++LI    +     +A   L EM        S   F+ + DG   C   DL    ELL
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGY--CKAQDLDRARELL 251

Query: 323 EVSL 326
              L
Sbjct: 252 SSML 255



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 3/201 (1%)

Query: 16  SPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAY 72
           SP T   S++I    K   +  A E+  +     +C   V+ +N+L+   C+ +    A 
Sbjct: 189 SPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAR 248

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+  G  PD  TY+ +++  C  G + +    L++M  +G  P V    +LV GL
Sbjct: 249 ELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGL 308

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +  A ++V +M++ G   +  T++ + + +CK  +++   ++  S+   G   DV
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDV 368

Query: 193 STYKILIPAVSKAGMIDEAFR 213
             ++ L+ +V K  +   AF+
Sbjct: 369 VAFEALLLSVKKRLLDRAAFQ 389



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++   +   S    + +++ + K   +D A E+ +      C   V+ Y++++  LC  
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 +AL+ +M+ +G  PD  TY +LV   C +GKM EA   ++ M + G  P     
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTY 336

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            L+  GL     L+ A  ++  +  +G + D+  F +L+ ++ K
Sbjct: 337 SLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKK 380


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 148/316 (46%), Gaps = 5/316 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+ +   ++ +P   +  +    K G V  A+EV        C+  V+ +N+L+  LC+ 
Sbjct: 43  EMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKA 102

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M R GF  +  TY  L+N   S+G+  EA   +Q M+     P  +  
Sbjct: 103 GRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTY 159

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS-V 183
           + ++ G   +G ++ A   + +M ++ G   D  T++ LI  +CKS  +    E+    +
Sbjct: 160 NAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMI 219

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +   CA V  +  L+    KA  +D A  LL +++E G  P    Y+ II G+ R G  
Sbjct: 220 GRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDV 279

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D  F    +M  +G  P+   YT+L+T   + G+ VEA   +  M E G TP +  + LV
Sbjct: 280 DKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLV 339

Query: 304 TDGLKNCGKHDLAEKI 319
            DGL    K D+A  +
Sbjct: 340 FDGLCKIDKLDMANDL 355



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 129/269 (47%), Gaps = 5/269 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+    + +  T + +I      G    AV V    T     Q    YN+++   
Sbjct: 110 QVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTTPDTQ---TYNAIIHGF 166

Query: 63  CEVKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNP 120
           C+      AY  +  M  R G  PD  TY+IL+N  C S  +R+A E LQEM   K    
Sbjct: 167 CKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCA 226

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + LV G   A  L+ A+++++ M++ G   D+ T++++I+ +C+ G+V+    + 
Sbjct: 227 SVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALL 286

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   DV TY +L+  + KAG + EA RL+  ++EDG  P    Y+ +  G+ + 
Sbjct: 287 EKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKI 346

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            + D A    + ++ KG   +   +  L+
Sbjct: 347 DKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 8/244 (3%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           D  TY +LV A C +G+++ A + L+EM  + G  P     +  V  L  +G +  A ++
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V  M       D+ TFN+LI  +CK+G ++   ++   + + G  A++ TY  LI  +S 
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPNRP 263
           AG   EA  ++  +      P    Y  II G  + G+ D A+ F  EMK + G  P+  
Sbjct: 137 AGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTF 193

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIELL 322
            Y++LI    +     +A   L EM        S   F+ + DG   C   DL    ELL
Sbjct: 194 TYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGY--CKAQDLDRARELL 251

Query: 323 EVSL 326
              L
Sbjct: 252 SSML 255



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 3/201 (1%)

Query: 16  SPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAY 72
           SP T   S++I    K   +  A E+  +     +C   V+ +N+L+   C+ +    A 
Sbjct: 189 SPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRAR 248

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+  G  PD  TY+ +++  C  G + +    L++M  +G  P V    +LV GL
Sbjct: 249 ELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGL 308

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +  A ++V +M++ G   +  T++ + + +CK  +++   ++  S+   G   DV
Sbjct: 309 CKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDV 368

Query: 193 STYKILIPAVSKAGMIDEAFR 213
             ++ L+ +V K  +   AF+
Sbjct: 369 VAFETLLLSVKKRLLDRAAFQ 389



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 78/164 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++   +   S    + +++ + K   +D A E+ +      C   V+ Y++++  LC  
Sbjct: 217 EMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRC 276

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 +AL+ +M+ +G  PD  TY +LV   C +GKM EA   ++ M + G  P     
Sbjct: 277 GDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTY 336

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            L+  GL     L+ A  ++  +  +G V D+  F +L+ ++ K
Sbjct: 337 SLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKK 380


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 148/302 (49%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L+    T + +I+ +GK GL+D +V +F +     C+  V+ YN+L+ + C+ 
Sbjct: 156 EQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKF 215

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K    A+   R M  K   P+  +Y+ L++A C  G M+ A +F  +M+  G  P     
Sbjct: 216 KGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTY 275

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+     AG L  A  + ++M+++   L++ T+ +L++ +C+ G +    E++ ++ K
Sbjct: 276 SSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGK 335

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  ++  Y  LI    K   +D+A  L + + E   KP   L+  I+ G+    + ++
Sbjct: 336 AGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEE 395

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                +EMK  G   N  +YT L+    + G   EA N L EM ++G       F  + D
Sbjct: 396 CKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALID 455

Query: 306 GL 307
           GL
Sbjct: 456 GL 457



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 135/313 (43%), Gaps = 9/313 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF---------NCQQCVLLYNSLLFALCEV 65
           V    + L+  EF    L+D   +  N   AF         +    ++ Y +LL  LCE 
Sbjct: 261 VDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEE 320

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            + + A  L R M + G  P+ + Y  L++       M +A E   EM +K   P +   
Sbjct: 321 GMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLW 380

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             +V GL +   LE  K ++ +M + G   +   + +L++   K+G     + +   +  
Sbjct: 381 GTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRD 440

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LG    V T+  LI  + K G++ EA      + +   +P  ++Y  +I G+ +     D
Sbjct: 441 LGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGD 500

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F EM+ K   P++  YT +I    + G F EA N   +M EMG+      +  +  
Sbjct: 501 AKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVW 560

Query: 306 GLKNCGKHDLAEK 318
           GL  CG+   A K
Sbjct: 561 GLSQCGQVQQARK 573



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  +L  +  + S +I+   K G++  A++ F   T          Y+SL+ A C+   
Sbjct: 228 MKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGN 287

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M+++    +  TY  L++  C  G M EA+E  + M   G  P ++    
Sbjct: 288 LGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTA 347

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G +    ++ A ++ N+M ++    D+  + +++  +C   ++E C  +   + + G
Sbjct: 348 LIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESG 407

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + A+   Y  L+ A  KAG   EA  LL  + + G +     +  +I G+ +RG   +A 
Sbjct: 408 IGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAI 467

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            +F  M      PN  VYT LI    +     +A     EM +  + P    +  + DG
Sbjct: 468 YYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDG 526



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 5/306 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W T  +  P    V     S+++E     G+++ A + F + T F         N+ L 
Sbjct: 51  LWTTRNVCVP-GFGVFDALFSVLVE----LGMLEAAGQCFLRMTKFRVLPKARSCNAFLH 105

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +      +    R M+  G  P   TY I++   C  G M  A+   ++M   G  P
Sbjct: 106 RLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTP 165

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + L+ G    G L+ +  +  +M   G   D+ T+N+LI + CK   +    E +
Sbjct: 166 DIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFF 225

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +    L  +V +Y  LI A+ K GM+  A +   ++   G  P    Y+ +I    + 
Sbjct: 226 REMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKA 285

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G   +AF    EM  +    N   YT L+      G   EA      M + G+TP  + +
Sbjct: 286 GNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAY 345

Query: 301 DLVTDG 306
             +  G
Sbjct: 346 TALIHG 351



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 116/277 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   + G+++ A E+F           +  Y +L+    +V+    A  L   M
Sbjct: 309 TYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEM 368

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD   +  +V   CS  K+ E +  + EM + G          L+     AG  
Sbjct: 369 REKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNR 428

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ +M   G  + + TF +LI+ +CK G V+  +  +  +    L  +V+ Y  L
Sbjct: 429 TEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTAL 488

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   I +A +L   + +    P    Y  +I G  + G F +A    ++M   G 
Sbjct: 489 IDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGI 548

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +   YT L+    + G+  +A  +L EM   G+ P
Sbjct: 549 ELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIP 585



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 2/282 (0%)

Query: 14  SVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            V+P  Q  + +I    K   +D A+E+FN+    + +  +LL+ ++++ LC        
Sbjct: 337 GVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++  M   G   +   Y  L++A+  +G   EA   L+EM D G    V     L+ G
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDG 456

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G ++ A     +M       ++  + +LI+ +CK+  +    +++  +    +  D
Sbjct: 457 LCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPD 516

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  +I    K G   EA  + + ++E G +     Y  ++ G+ + GQ   A  F +
Sbjct: 517 KIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLA 576

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           EM  KG  P+  + T L+      G   EA     E+ E GL
Sbjct: 577 EMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 95/215 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +P   + +++ + K G    A+ +  +      +  V+ + +L+  LC+  L
Sbjct: 403 MKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGL 462

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A     RM      P+   Y  L++  C +  + +A++   EM DK   P       
Sbjct: 463 VQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTA 522

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G L  G  + A  M NKM++ G  LDL  + SL+  + + G+V+   +    +   G
Sbjct: 523 MIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKG 582

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +  D +    L+    + G IDEA  L + LVE G
Sbjct: 583 IIPDETLCTRLLRKHYELGNIDEAIELQNELVEKG 617



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D L   L+  G LE+A Q   +M K   +    + N+ +  + K+GE +   + +  +  
Sbjct: 66  DALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVG 125

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+   V TY I+I  V K G +  A  L   + + G  P    Y  +I G  + G  D+
Sbjct: 126 AGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDE 185

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           + C F EMK  G  P+   Y  LI    +    + A  +  EM +  L P    +  + D
Sbjct: 186 SVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLID 245

Query: 306 GLKNCGKHDLAEK 318
            L   G   +A K
Sbjct: 246 ALCKEGMMQMAIK 258



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+     V+  T   +I+   K GLV  A+  F +    + Q  V +Y +L+  LC+
Sbjct: 435 LEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCK 494

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   M  K  +PDK  Y  +++     G  +EA     +M + G    +  
Sbjct: 495 NNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYA 554

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              LV GL   G ++ A++ + +MI +G + D      L+    + G ++  +E+   + 
Sbjct: 555 YTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELV 614

Query: 185 KLGL 188
           + GL
Sbjct: 615 EKGL 618



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M+  N+       + +I+   KHG    A+ + NK      +  +  Y SL++ L
Sbjct: 503 KLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL 562

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF---- 118
            +      A   +  MI KG +PD+     L+      G + EA E   E+ +KG     
Sbjct: 563 SQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGN 622

Query: 119 -NPPV 122
            NP V
Sbjct: 623 SNPAV 627


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 153/349 (43%), Gaps = 39/349 (11%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P   T + +I    K G V  A  + ++   ++    V  Y SL+   C  +   
Sbjct: 233 NSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 292

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL-- 127
            A+ +  RM+++G  P+  TY+ L+N  C+ G++ EA + L+EM +KG  P V    L  
Sbjct: 293 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 352

Query: 128 ---------------------------------LVQGLLNAGYLESAKQMVNKMIKQGFV 154
                                            L+ GL   G LE A  + +KM+K+G V
Sbjct: 353 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 412

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  T+N+LI  +C  G     +++++ +   G  A+  TY  +I  +   G I++A  L
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +++ G  P    Y  +I G   +G  ++A      MK  G  P+   Y  L++   +
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 532

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G+   A+ Y  EM E GL P    +  + DG    GK D+A  + LLE
Sbjct: 533 WGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIA--LSLLE 579



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 118/272 (43%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  V  Y +L+  L  +     A  L  +M+++G VP+  TY  L+N  C  G+   A 
Sbjct: 376 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 435

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           +    M   G     +  + +++GL   G +E A  +  KM+K G +  + T+N+LI   
Sbjct: 436 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 495

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              G V     +   + + G   D  TY  L+   SK G ++ A      +VE G  P P
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G  + G+ D A      M+  G  PN   Y  +I    +  RF EA     +
Sbjct: 556 VSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 615

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M E GL P    +  + DGL   G+   A KI
Sbjct: 616 MAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 131/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E    G    A+++F+             YN ++  LC       A  L  +M
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P   TY  L+N + + G +  A   L  M + G  P     + LV G    G L
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA     +M++ G   +  ++ +LI+   K G+V+  + +   + ++G   +V +Y  +
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK     EA ++   + E G  P    Y  +I G+ R G+   AF  F +M+ +  
Sbjct: 597 INGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 656

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y+ LI    + G+  EA   L EM   GL P    F  + DG    G+ D A
Sbjct: 657 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 714



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 4/308 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K    M+ +    + QT + II+     G ++ A+ +F K         V+ YN+L+   
Sbjct: 436 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 495

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 + A  L+  M   G  PD+ TY  LV+ +   GK+  A  + QEM + G NP  
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  ++ +M + G   ++E++N++I  + K        ++   
Sbjct: 556 VSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 615

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRR 240
           + + GL  +V TY  LI  + + G    AF++ H++  +  K  P+L  Y+ +I G+ + 
Sbjct: 616 MAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQE 673

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A     EM+ KG  P+   +T LI      GR   A   L  M ++G  P  R +
Sbjct: 674 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTY 733

Query: 301 DLVTDGLK 308
            ++  GL+
Sbjct: 734 SVLLKGLQ 741



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 2/272 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL  L + ++  GA  L ++M+  G  P   T+  L+N     GK+REA+  L ++  
Sbjct: 209 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 268

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
              +P V     L+ G      L+ A  + ++M+K+G   +  T+++LI  +C  G V+ 
Sbjct: 269 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 328

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            ++M   + + G+   V TY + I A+      +EA  L+  + + G +P    Y  +I 
Sbjct: 329 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 388

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R G+ + A   + +M  +G  PN   Y  LI     GGRF  A      M   G   
Sbjct: 389 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 448

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            ++ ++ +  GL  C   D+ + + L E  L+
Sbjct: 449 NTQTYNEIIKGL--CLGGDIEKAMVLFEKMLK 478



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 131/285 (45%), Gaps = 25/285 (8%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +P + + +I+   K G VD A+ +  +     C   V  YN+++  L +   F  A 
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M  +G +P+  TY  L++  C +G+ + A +   +M  +   P +     L+ GL
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G  + A+ ++ +M ++G   D  TF SLI+     G ++    +   +  +G   + 
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNY 730

Query: 193 STYKILIPAVSKAGMI--------------------DEAFRLLHNLV----EDGHKPFPS 228
            TY +L+  + K  ++                    D  F ++ NL+    E G +P   
Sbjct: 731 RTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLD 790

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV-YTMLITMC 272
            Y+ ++ G+ R+G+F +A     +MK +G  P+R + Y++LI  C
Sbjct: 791 TYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHC 835



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 133/322 (41%), Gaps = 59/322 (18%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-------------- 64
           T + +I+   ++G    A ++F+      C   +  Y+SL++ LC+              
Sbjct: 627 TYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM 686

Query: 65  ------------VKLFHG---------AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103
                         L  G         A+ L+RRM+  G  P+ RTY++L+        +
Sbjct: 687 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLL 746

Query: 104 REAQ------------------------EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            E +                          L  MS+ G  P +     LV GL   G   
Sbjct: 747 LEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFY 806

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A+Q+V  M ++GF  D E + SL+   CK+ EV+  +++++S+   G    +S Y+ LI
Sbjct: 807 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALI 866

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ KAG ++EA  L  N++E        ++  ++ G+ + G+ D        M+ K   
Sbjct: 867 CALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFT 926

Query: 260 PNRPVYTMLITMCGRGGRFVEA 281
           PN   Y +L     R G+ +E+
Sbjct: 927 PNIQTYVILGRELSRIGKSIES 948



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 1/245 (0%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           +++ R++R + F P      +++ A  +  ++R   +FL E+S  GF   +   + L+  
Sbjct: 155 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 214

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     +E A+ +  +M+  G    L TFN+LI  + K G+V     +   + +  L  D
Sbjct: 215 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 274

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI    +   +D AF +   +V++G  P    Y+ +I G+   G+ D+A     
Sbjct: 275 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 334

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  P    YT+ IT         EA   +  M + G  P  + +  +  GL   G
Sbjct: 335 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 394

Query: 312 KHDLA 316
           K ++A
Sbjct: 395 KLEVA 399


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 152/315 (48%), Gaps = 2/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+     T S II+   + G +D A+ +F +      +  V+ YNSL+  LC+   
Sbjct: 209 MEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           ++    L++ M+ +  VP+  T+ +L++ +   GK++EA E  +EM  +G +P +   + 
Sbjct: 269 WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNT 328

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A  M++ M++     D+ TF SLI+  C    V+  ++++ ++ K G
Sbjct: 329 LMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRG 388

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A+  TY IL+    ++G I  A  L   +V  G  P    Y  ++ G+   G+ + A 
Sbjct: 389 LVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKAL 448

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +++         +YT +I    +GG+  +A N    +   G+ P    + ++  GL
Sbjct: 449 EIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 508

Query: 308 KNCGKHDLAEKIELL 322
             C K  L+E   LL
Sbjct: 509 --CKKGSLSEANILL 521



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ + SL+   C VK       + R + ++G V +  TY+ILV  +C SGK++ A+
Sbjct: 354 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 413

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E  QEM   G  P V    +L+ GL + G LE A ++   + K    L +  + ++IE +
Sbjct: 414 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGM 473

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+VE    ++ S+   G+  +V TY ++I  + K G + EA  LL  + EDG+ P  
Sbjct: 474 CKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPND 533

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             Y  +I+   R G    +     EMK  G   +     M+I M
Sbjct: 534 CTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 577



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 137/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G +  A E++ +         ++ YN+L+   C       A  ++  M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+  L+  +C   ++ +  +  + +S +G         +LVQG   +G +
Sbjct: 350 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 409

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  +M+  G + D+ T+  L++ +C +G++E  +E++  + K  +   +  Y  +
Sbjct: 410 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 469

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  +I G+ ++G   +A     +M+  G+
Sbjct: 470 IEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 529

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y  LI    R G    +A  + EM   G +  +    +V D L
Sbjct: 530 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T +   +I+     G V  AV + ++     CQ  V+ YNS++  +C 
Sbjct: 136 LGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICR 195

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+R+M  +    D  TY+ ++++ C  G +  A    +EM  KG    V  
Sbjct: 196 SGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVT 255

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV+GL  AG       ++  M+ +  V ++ TFN L++   K G+++   E+Y  + 
Sbjct: 256 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMI 315

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  ++ TY  L+        + EA  +L  +V +   P    +  +IKG     + D
Sbjct: 316 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 375

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           D    F  +  +G   N   Y++L+    + G+   A     EM   G+ P    + ++ 
Sbjct: 376 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 435

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL + GK  L + +E+ E
Sbjct: 436 DGLCDNGK--LEKALEIFE 452



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A+ +F +         ++ ++    A+   K F+      +++   G   +  T  I+
Sbjct: 60  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 119

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N +C   K   A   L ++   G+ P     + L++GL   G +  A  +V++M++ G 
Sbjct: 120 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 179

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D+ T+NS++  IC+SG+    +++   + +  + ADV TY  +I ++ + G ID A  
Sbjct: 180 QPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAIS 239

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G K     Y  +++G+ + G+++D      +M  +   PN   + +L+ +  
Sbjct: 240 LFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFV 299

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + G+  EA     EM   G++P    ++ + DG   C ++ L+E   +L++ +R+
Sbjct: 300 KEGKLQEANELYKEMITRGISPNIITYNTLMDGY--CMQNRLSEANNMLDLMVRN 352



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 112/234 (47%), Gaps = 5/234 (2%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY+++ ++++ G+ PD  T+  L+      GK+ EA   +  M + G  P V   + +V 
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 191

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  +G    A  ++ KM ++    D+ T++++I+++C+ G ++  + ++  +   G+ +
Sbjct: 192 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 251

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY  L+  + KAG  ++   LL ++V     P    +  ++    + G+  +A   +
Sbjct: 252 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELY 311

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            EM  +G  PN   Y  L+       R  EA N L  M     +P     D+VT
Sbjct: 312 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSP-----DIVT 360


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 138/311 (44%), Gaps = 5/311 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++P   S      S++I+     G +D A+ +F       C+Q VLLYN+L+  L   
Sbjct: 411 EMVRPXTTS-----FSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 465

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 Y L++ M   GF P + T+  +    C    +  A + ++EM   G  P ++  
Sbjct: 466 NRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHY 525

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            LLV+ L        A   + +M+++GF+ D+  +++ I+   K   V+  +E++  +C 
Sbjct: 526 TLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICA 585

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G C DV  Y  LI    K   + EA  +L  +V  G  P    Y  +I G  + G  D 
Sbjct: 586 RGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQ 645

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF   S M  K   PN   YT LI      GR  +A +   EM   G +P    F  +  
Sbjct: 646 AFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIH 705

Query: 306 GLKNCGKHDLA 316
           GL  CG  D A
Sbjct: 706 GLCKCGWPDAA 716



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 138/354 (38%), Gaps = 49/354 (13%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V    LS+++  F K G VD A E+  +      +     +  L+           A  L
Sbjct: 226 VDGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQL 285

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV------------ 122
            ++M + GF PD   Y  L+   C+  ++ +A   L EM + G +P +            
Sbjct: 286 FKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSE 345

Query: 123 ----------RGRDL-----------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--- 158
                     R  DL           ++ GL+N   ++ A  ++  M    +  + E   
Sbjct: 346 EVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNK 405

Query: 159 -------------TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
                        +F+ +I+ +C +G+++  + ++  + ++G   +V  Y  LI  +S +
Sbjct: 406 FFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNS 465

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
             ++E + LL  +   G +P    +  I   + RR     A     EM++ GH P    Y
Sbjct: 466 NRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHY 525

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           T+L+    +  R  EA N+L EM   G  P    +    DG       D A +I
Sbjct: 526 TLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEI 579



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 115/261 (44%), Gaps = 24/261 (9%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           S+L A C  + F  A ++   +  +G+V D    +ILV  +   G++ +A E ++ M D 
Sbjct: 199 SVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDL 257

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G     +   +L+ G +    ++ A Q+  KM K GF  D+  +++LI  +C   E+E  
Sbjct: 258 GIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKA 317

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIK 235
           + +   + +LG+  D+     LIP  S+   I   +RL+   +ED   +    LY  ++ 
Sbjct: 318 LHLLSEMKELGIDPDIQILSKLIPYCSEEVDI---YRLIEERLEDLDTEAMLLLYNSVLN 374

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+      D A+     M    +  N  V                  N    + EM + P
Sbjct: 375 GLVNGKSVDKAYYLLXAMTGDNYTDNFEV------------------NKFFMVKEM-VRP 415

Query: 296 ISRCFDLVTDGLKNCGKHDLA 316
            +  F +V DGL N GK DLA
Sbjct: 416 XTTSFSIVIDGLCNTGKLDLA 436



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ Y++ +    ++K    A  + R +  +G+ PD   Y  L+N +C   ++ EA + L 
Sbjct: 557 IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILD 616

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P V   +LL+ G    G ++ A   +++M+ +    ++ T+ +LI+ +C +G
Sbjct: 617 EMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAG 676

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +  + ++  +   G   +  ++  LI  + K G  D A      + E    P   +Y 
Sbjct: 677 RPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGER-ETPDTIVYV 735

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            +I           AF    EM  KG  P+
Sbjct: 736 ALITSFISNKNPTLAFEILKEMVAKGKFPD 765



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I+ + K+G +D A    ++      +  V+ Y +L+  LC       A  L   M
Sbjct: 629 TYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEM 688

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             KG  P++ ++  L++  C  G    A  + +EM ++
Sbjct: 689 RGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGER 726


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 34/349 (9%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M    ++    T S++++ F K   VD A+E+ +   +  C   V+ +NS++  LC+
Sbjct: 418 IESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 477

Query: 65  VKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK---GFNP 120
                 A+ +   M ++ G VPDK TY  L++    +G+  +A+  L  M D     FN 
Sbjct: 478 SDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNC 537

Query: 121 PVRGR----------------------------DLLVQGLLNAGYLESAKQMVNKMIKQG 152
            + G                             ++L+ G   AG  E A  +  +M+ + 
Sbjct: 538 CINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 597

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ TF +LI+ +CK+G+VE   ++   +  LG+  +V TY  L+  + K+G I+EA 
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 657

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           + L  +V  G  P    Y  ++  + R  + DDA    SE+K  G  P+   Y +L+   
Sbjct: 658 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 717

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            + G+  +A   L EM   G  P    ++ + D L  C   DL E   L
Sbjct: 718 WKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSL--CKAGDLEEARRL 764



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 8/309 (2%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I    K G V  A++V+N+          + +N L+   C+   F  A AL   M+ K  
Sbjct: 539 INGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNL 598

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD  T+  L++  C +G++  A++ L  M + G  P V   + LV GL  +G +E A Q
Sbjct: 599 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQ 658

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
            + +M+  G V D  T+ SL+  +C++   +  +++   +   G   D  TY IL+  + 
Sbjct: 659 FLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLW 718

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP---P 260
           K+G  ++A  +L  +V  GH P    Y  +I  + + G  ++A     +M  +      P
Sbjct: 719 KSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVP 778

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMG--LTPISRCFDLVTDGLKNCGKHDLAEK 318
           N   Y++LI    + GR  EA   + EM      + P    ++   DGL  C +  +AE 
Sbjct: 779 NVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGL--CKQSMMAEA 836

Query: 319 IELLEVSLR 327
            EL+  SLR
Sbjct: 837 CELMR-SLR 844



 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 150/315 (47%), Gaps = 11/315 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A  +    ++ +C   V+ Y+ L+  LC+V     A  LI+ M
Sbjct: 253 TYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEM 312

Query: 79  IRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLVQGLLN 134
            RK    +P+  TY   ++  C      EA E ++ + D     +P       L+ GL  
Sbjct: 313 TRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCK 372

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G ++ A  + + MI  G+V ++ T+N+L+  +CK+ ++E    M  S+   G+  DV T
Sbjct: 373 CGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVIT 432

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +L+ A  KA  +DEA  LLH +   G  P    +  II G+ +  +  +AF  F +M 
Sbjct: 433 YSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMA 492

Query: 255 IK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           +K G  P++  Y  LI    R GR  +A   L  M +    P +  F+   +GL   G  
Sbjct: 493 LKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDV 548

Query: 314 DLAEKI--ELLEVSL 326
             A ++   +LE+ L
Sbjct: 549 SRALQVYNRMLELEL 563



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N  +  L ++     A  +  RM+    VPDK T+ IL+   C +G   +A    +EM 
Sbjct: 535 FNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMV 594

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            K   P V     L+ GL  AG +E+A+ +++ M   G   ++ T+N+L+  +CKSG +E
Sbjct: 595 AKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIE 654

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +    +   G   D  TY  L+ A+ +A   D+A +L+  L   G  P    Y  ++
Sbjct: 655 EACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+++ GQ + A     EM  KGH P+   Y  LI    + G   EA     +M+    +
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMS----S 770

Query: 295 PISRC-------FDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            +SRC       + ++ +GL   G+ D  E  EL++  +R
Sbjct: 771 RVSRCCVPNVVTYSVLINGLCKVGRID--EARELIQEMMR 808



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 149/324 (45%), Gaps = 17/324 (5%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL V P   T + ++    K G ++ A +   +  +  C    + Y SL++ALC      
Sbjct: 630 NLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD 689

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+  +   G+ PD  TY ILV+    SG+  +A   L+EM  KG +P V   + L+
Sbjct: 690 DALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLI 749

Query: 130 QGLLNAGYLESAKQMVNKM---IKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYS 182
             L  AG LE A+++   M   + +  V ++ T++ LI  +CK G +    E   EM   
Sbjct: 750 DSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRK 809

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH---KPFPSLYAPIIKGMFR 239
            C   +  ++ TY   +  + K  M+ EA  L+ +L  DG     P    ++ +I G+ +
Sbjct: 810 SCD--VLPNIITYNSFLDGLCKQSMMAEACELMRSL-RDGSLRVSPDTVTFSTLIDGLCK 866

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            GQ D+A   F +M   G+ PN   Y +L+    +  +   A   +  M + G+TP    
Sbjct: 867 CGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVIT 926

Query: 300 FDLVTDGLKNCGKHDLAEKIELLE 323
           + ++ D    C    + E +ELL 
Sbjct: 927 YSVLVDAF--CKASHVDEALELLH 948



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 152/350 (43%), Gaps = 53/350 (15%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC---- 63
            +K +       T +++++   K G  + A+ V  +         V+ YN+L+ +LC    
Sbjct: 698  LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGD 757

Query: 64   --EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---- 117
              E +  HG    +   + +  VP+  TY++L+N  C  G++ EA+E +QEM  K     
Sbjct: 758  LEEARRLHGD---MSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814

Query: 118  -----FNPPVRG-----------------RD-------------LLVQGLLNAGYLESAK 142
                 +N  + G                 RD              L+ GL   G  + A 
Sbjct: 815  PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 143  QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             + + MI  G+V ++ T+N L+  +CK+ ++E    M  S+   G+  DV TY +L+ A 
Sbjct: 875  NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAF 934

Query: 203  SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPN 261
             KA  +DEA  LLH +   G  P    +  II G+ +  Q  +AF  F +M +K G  P+
Sbjct: 935  CKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPD 994

Query: 262  RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            +  Y  LI    R G   +A   L  M +    P +  F+   +GL   G
Sbjct: 995  KITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLG 1040



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 142/328 (43%), Gaps = 35/328 (10%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ--QCVLLYNSLLFALCEVKLFHGAYALIR 76
            T S++I    K G +D A E+  +    +C     ++ YNS L  LC+  +   A  L+R
Sbjct: 782  TYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMR 841

Query: 77   RMIRKGFV---PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
             + R G +   PD  T++ L++  C  G+  EA     +M   G+ P V   ++L+ GL 
Sbjct: 842  SL-RDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLC 900

Query: 134  NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                +E A  M+  M+ +G   D+ T++ L++  CK+  V+  +E+ + +   G   +V 
Sbjct: 901  KTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVV 960

Query: 194  TYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  +I  + K+    EAF++  ++ ++ G  P    Y  +I G+FR G    A      
Sbjct: 961  TFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDA 1020

Query: 253  MK----------IKGHP------------------PNRPVYTMLITMCGRGGRFVEAANY 284
            M           I G                    P++  + +LI    + G F +A+  
Sbjct: 1021 MPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASAL 1080

Query: 285  LVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              EM    L P    F  + DGL   G+
Sbjct: 1081 FEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 20/290 (6%)

Query: 1    MWKTIELMKPY---NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLY 55
            M +  ELM+     +L VSP T+  S +I+   K G  D A  VF+   A      V+ Y
Sbjct: 833  MAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTY 892

Query: 56   NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
            N L+  LC+      A+A+I  M+ KG  PD  TY++LV+A+C +  + EA E L  M+ 
Sbjct: 893  NVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMAS 952

Query: 116  KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSG--- 171
            +G  P V   + ++ GL  +     A QM + M +K G   D  T+ +LI+ + ++G   
Sbjct: 953  RGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAG 1012

Query: 172  EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            + E  ++            D   +   I  +SK G   +  R LH ++E    P    + 
Sbjct: 1013 QAEVLLDAMPD-------PDTYAFNCCINGLSKLG---DVSRALHRMLELELVPDKVTFN 1062

Query: 232  PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
             +I G  + G F+ A   F EM  K   P+   +  LI    + G+ VEA
Sbjct: 1063 ILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ-VEA 1111



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 118/274 (43%), Gaps = 42/274 (15%)

Query: 90  YAILVNAWCSSGKMREAQE-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           Y I++ + C +G+   A E F  EM+  G  P +   + ++ GL  +  L +  ++  ++
Sbjct: 183 YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 242

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +++G   D+ T+N+LI+++CK+G++E    ++  +       +V TY +LI  + K G I
Sbjct: 243 VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRI 302

Query: 209 DEAFRLLHNLVEDGHKPFPSL--------------------------------------- 229
           DEA  L+  +        P++                                       
Sbjct: 303 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           ++ +I G+ + GQ D+A   F +M   G+ PN   Y  L+    +  +   A   +  M 
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           + G+TP    + ++ D    C    + E +ELL 
Sbjct: 423 DKGVTPDVITYSVLVDAF--CKASRVDEALELLH 454



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHN-LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           V+ Y I++ ++ +AG    A  +    +  DG  P    Y  II G+ +  +       F
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            E+  +GH P+   Y  LI    + G   EA     +M+     P    + ++ +GL   
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 311 GKHDLAEKI 319
           G+ D A ++
Sbjct: 300 GRIDEAREL 308


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 37/342 (10%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P   T + +I    K G V  A  + ++   ++    V  Y SL+   C  +   
Sbjct: 191 NSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 250

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL-- 127
            A+ +  RM+++G  P+  TY+ L+N  C+ G++ EA + L+EM +KG  P V    L  
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 128 ---------------------------------LVQGLLNAGYLESAKQMVNKMIKQGFV 154
                                            L+ GL   G LE A  + +KM+K+G V
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  T+N+LI  +C  G     +++++ +   G  A+  TY  +I  +   G I++A  L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +++ G  P    Y  +I G   +G  ++A      MK  G  P+   Y  L++   +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            G+   A+ Y  EM E GL P    +  + DG    GK D+A
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIA 532



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 118/272 (43%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  V  Y +L+  L  +     A  L  +M+++G VP+  TY  L+N  C  G+   A 
Sbjct: 334 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 393

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           +    M   G     +  + +++GL   G +E A  +  KM+K G +  + T+N+LI   
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              G V     +   + + G   D  TY  L+   SK G ++ A      +VE G  P P
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G  + G+ D A      M+  G  PN   Y  +I    +  RF EA     +
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M E GL P    +  + DGL   G+   A KI
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%), Gaps = 31/300 (10%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +P + + +I+   K G VD A+ +  +     C   V  YN+++  L +   F  A 
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------------------- 113
            +  +M+ +G +P+  TY  L++  C +G+ + A +   +M                   
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 114 ------------SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
                       S+ G  P +     LV GL   G    A+Q+V  M ++GF  D E + 
Sbjct: 629 CQEGKADEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYY 688

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           SL+   CK+ EV+  +++++S+   G    +S Y+ LI A+ KAG ++EA  L  N++E 
Sbjct: 689 SLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEK 748

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
                  ++  ++ G+ + G+ D        M+ K   PN   Y +L     R G+ +E+
Sbjct: 749 EWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIES 808



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 142/314 (45%), Gaps = 17/314 (5%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K    M+ +    + QT + II+     G ++ A+ +F K         V+ YN+L+   
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 + A  L+  M   G  PD+ TY  LV+ +   GK+  A  + QEM + G NP  
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  ++ +M + G   ++E++N++I  + K        ++   
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRR 240
           + + GL  +V TY  LI  + + G    AF++ H++  +  K  P+L  Y+ +I G+ + 
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQE 631

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP----- 295
           G+ D+A      M   G  P    Y+ L++   R GRF EA   + +M E G  P     
Sbjct: 632 GKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIY 687

Query: 296 ----ISRCFDLVTD 305
               I+ C +L  D
Sbjct: 688 YSLLIAHCKNLEVD 701



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 137/312 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK      + QT + +I    + G ++ A+ +++K          + YN+L+  LC    
Sbjct: 329 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 388

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +   M   G + + +TY  ++   C  G + +A    ++M   G  P V   + 
Sbjct: 389 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 448

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G L  G + +A ++++ M + G   D  T+N L+    K G++E     +  + + G
Sbjct: 449 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 508

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  +Y  LI   SK G +D A  LL  + E G  P    Y  +I G+ +  +F +A 
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +M  +G  PN   YT LI    R GR   A     +M +    P    +  +  GL
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 308 KNCGKHDLAEKI 319
              GK D AE++
Sbjct: 629 CQEGKADEAERM 640



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 2/272 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL  L + ++  GA  L ++M+  G  P   T+  L+N     GK+REA+  L ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
              +P V     L+ G      L+ A  + ++M+K+G   +  T+++LI  +C  G V+ 
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            ++M   + + G+   V TY + I A+      +EA  L+  + + G +P    Y  +I 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R G+ + A   + +M  +G  PN   Y  LI     GGRF  A      M   G   
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            ++ ++ +  GL  C   D+ + + L E  L+
Sbjct: 407 NTQTYNEIIKGL--CLGGDIEKAMVLFEKMLK 436



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 1/245 (0%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           +++ R++R + F P      +++ A  +  ++R   +FL E+S  GF   +   + L+  
Sbjct: 113 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 172

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     +E A+ +  +M+  G    L TFN+LI  + K G+V     +   + +  L  D
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI    +   +D AF +   +V++G  P    Y+ +I G+   G+ D+A     
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  P    YT+ IT         EA   +  M + G  P  + +  +  GL   G
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 312 KHDLA 316
           K ++A
Sbjct: 353 KLEVA 357


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 10/312 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K G + +AV++F +    +C    + YNSL+   C       A  L+ +M
Sbjct: 216 TYSTVIDGLCKAGRLRDAVDIFEE---MSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKM 272

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     PD  TY  L++A+C  G++ +A E  Q+M     +P V     LV GL   G +
Sbjct: 273 VDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM 332

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++ ++ ++G    + T+N +++  CK+ +V    E+       G   +  TY IL
Sbjct: 333 EDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNIL 392

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCFFSEMKI 255
           +    +AG  D+A + L  L  +G  P P+   +YA I+  + R G+ DDA  F+ EM  
Sbjct: 393 VAGCCRAGRTDQALQYLDQLNSEG-GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQ 451

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G+ P    +  ++    +  +  +A   L EM + G TP     D V       G   +
Sbjct: 452 RGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAG---M 508

Query: 316 AEKIELLEVSLR 327
            +K + L   LR
Sbjct: 509 IQKADELASELR 520



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 154/312 (49%), Gaps = 10/312 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++++       VD+A E+  +          + Y++L+  LC+ +    A AL+  M
Sbjct: 76  TLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETM 135

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P   TY  ++  +C + ++ EA  F+++M  +G +P +     L+ G   +  +
Sbjct: 136 AERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDV 195

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS-TYKI 197
               +++ ++ ++GF  D+ T++++I+ +CK+G +   V+++  +     CA  + TY  
Sbjct: 196 GRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS----CAPTAITYNS 251

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +AG +DEA RLL  +V+D   P    Y  ++    + G+ DDA+  F +M    
Sbjct: 252 LIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK 311

Query: 258 HPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P+   +T L+  +CG  GR  +A   L E+T  G  P    ++ V DG   C K +  
Sbjct: 312 LSPDVVTFTSLVDGLCGE-GRMEDALELLEEITRRGCPPTIYTYNCVVDGY--C-KANQV 367

Query: 317 EKIELLEVSLRS 328
            K E L    RS
Sbjct: 368 RKAEELVADFRS 379



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 139/312 (44%), Gaps = 3/312 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    ++ +  T S +++   K   +D AV +        C   V+ YNS++   C 
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A+  + +M+ +G  PD  TY  L+  +C S  +    E L E++ +GF P +  
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ GL  AG L  A  +  +M      +   T+NSLI   C++G+++  + +   + 
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIFEEMSCAPTAI---TYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
                 DV TY  L+ A  K G +D+A+ L   +V +   P    +  ++ G+   G+ +
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     E+  +G PP    Y  ++    +  +  +A   + +    G  P +  ++++ 
Sbjct: 334 DALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILV 393

Query: 305 DGLKNCGKHDLA 316
            G    G+ D A
Sbjct: 394 AGCCRAGRTDQA 405



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 137/290 (47%), Gaps = 2/290 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +   +++ +  + + +  T + +I  + + G +D A+ +  K     C   V+ Y +L+ 
Sbjct: 230 LRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMS 289

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C++     AY L ++M+     PD  T+  LV+  C  G+M +A E L+E++ +G  P
Sbjct: 290 AFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPP 349

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +V G   A  +  A+++V     +GFV +  T+N L+   C++G  +  ++  
Sbjct: 350 TIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYL 409

Query: 181 YSV-CKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
             +  + G C   V+ Y I++ A+ + G  D+A +    +++ G+ P  + +A ++  + 
Sbjct: 410 DQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALC 469

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +  Q   A     EM   GH P       +++   R G   +A     E+
Sbjct: 470 KAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASEL 519



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 115/239 (48%), Gaps = 2/239 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G +D+A E+F +  A      V+ + SL+  LC       A  L+  +
Sbjct: 283 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 342

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  P   TY  +V+ +C + ++R+A+E + +   +GF P     ++LV G   AG  
Sbjct: 343 TRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 402

Query: 139 ESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A Q ++++  +G      +  +  +++ +C+ G  +  V+ Y  + + G     +T+ 
Sbjct: 403 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFA 462

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ++ A+ KA    +A  LL  +++ GH P P     ++    R G    A    SE+++
Sbjct: 463 TVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELRL 521



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 6/271 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            LL+N ++  LC       A  + R+M      PD  TY  LV+    + ++R+A + LQ
Sbjct: 5   TLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQ 63

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM      P      ++VQ L     ++ A+++V +M+ +G   +  T+++L++ +CK  
Sbjct: 64  EMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 123

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  V +  ++ + G    V TY  +I    +A  +DEA   +  +V +G  P    Y 
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYT 183

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +            E+  +G  P+   Y+ +I    + GR  +A +   EM+  
Sbjct: 184 ALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS-- 241

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
              P +  ++ +  G   C   D+ E I LL
Sbjct: 242 -CAPTAITYNSLIGGY--CRAGDMDEAIRLL 269


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P   T + +I    K G    AVE+F+   A  CQ  V  YN+++  LC+
Sbjct: 151 LAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCK 210

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+++M   G  P+  TY+ L+++ C    + EA +    M  KG +P +  
Sbjct: 211 IGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFT 270

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QGL      + A  ++N+M     + D+ TFN L++T CK G+V   + +  ++ 
Sbjct: 271 YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT 330

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++G+  +V TY  L+   S    + EA +L H ++  G KP    Y  +I G  +  + D
Sbjct: 331 EMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRID 390

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+EM  +G  PN   Y  LI    + G+  EA +    M   G  P    + ++ 
Sbjct: 391 EAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILL 450

Query: 305 DGL 307
           DG 
Sbjct: 451 DGF 453



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   +  LV+ A+++F+   A      +  Y SL+  LC+   +  A AL+  M
Sbjct: 235 TYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEM 294

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------------------- 115
                +PD  T+ +LV+ +C  GK+ EA   L+ M++                       
Sbjct: 295 TSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDV 354

Query: 116 ------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       KG  P +   ++L+ G   A  ++ A Q+ N+MI QG   +  ++N+L
Sbjct: 355 VEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C+ G++    +++ ++C  G   D+ TY IL+    K G + +AFRL   +     
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP   +Y  ++  M + G   DA   FSE+ ++G  P+  +YT +I    + G   EA  
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALE 534

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
               M   G  P    ++++  GL
Sbjct: 535 AFRNMEADGCPPDEISYNVIIRGL 558



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 132/305 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +  TLS+ +  F +   VD    V  K      Q  ++ + +L+  LC+V  
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L   M+ KG  PD  TY  ++N  C  G+   A   L++M + G  P +     
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYST 238

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L     +  A  + + M  +G   D+ T+ SLI+ +CK    +    +   +  L 
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ T+ +L+    K G + EA  +L  + E G +P    Y+ ++ G        +A 
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEAR 358

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  PN   Y +LI    +  R  EA     EM   GLTP +  ++ +  G 
Sbjct: 359 KLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGF 418

Query: 308 KNCGK 312
              GK
Sbjct: 419 CQLGK 423



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A ++F+      C+  +  YN L+   C+ K    A  L   MI +G  P+  +Y  
Sbjct: 354 VVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNT 413

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++ +C  GK+REAQ+  + M   G  P +    +L+ G    GYL  A ++   M    
Sbjct: 414 LIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTY 473

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +L  +  L+  +CKSG  +   +++  +   GL   V  Y  +I  + K G++DEA 
Sbjct: 474 LKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEAL 533

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
               N+  DG  P    Y  II+G+ +      A     EM+ +G
Sbjct: 534 EAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRG 578



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 123/264 (46%), Gaps = 1/264 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYA 91
           +D+A+  FN         C++ +  LL A+ ++  ++    +L ++M   G  P+  T +
Sbjct: 73  IDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLS 132

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           I +N +C   ++      L ++   G  P +     L+ GL   G    A ++ + M+ +
Sbjct: 133 IFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAK 192

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+N++I  +CK GE      +   + + G   ++ TY  LI ++ +  +++EA
Sbjct: 193 GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEA 252

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +   +   G  P    Y  +I+G+ +  ++ +A    +EM      P+   + +L+  
Sbjct: 253 LDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDT 312

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
             + G+  EA   L  MTEMG+ P
Sbjct: 313 FCKEGKVSEALGVLKTMTEMGVEP 336



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 65/140 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++ F K G +  A  +F    +   +  +++Y  L+ A+C+      A  L   +
Sbjct: 445 TYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSEL 504

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P  + Y  ++N  C  G + EA E  + M   G  P     +++++GLL     
Sbjct: 505 FVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDE 564

Query: 139 ESAKQMVNKMIKQGFVLDLE 158
             A  +V +M  +GF+ D+ 
Sbjct: 565 SRALLLVGEMRDRGFIADVR 584


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I  +   G +D A  V ++   +  C   +  YN+L+  LC+      A  L+  M  K
Sbjct: 377 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 436

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  TY IL++ +C  G++ EA+  L EMS KG      G + L+  L     ++ A
Sbjct: 437 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 496

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             M   M  +G   D+ TFNSLI  +CK  + E  + +Y  +   G+ A+  TY  LI A
Sbjct: 497 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 556

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G + EA +L+++++  G       Y  +IK + R G  +     F +M  KG  PN
Sbjct: 557 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 616

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                +LI    R G    A  +L +M   GLTP    ++ + +GL   G+
Sbjct: 617 NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 667



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G ++ A  V ++ +        + YN L+ ALC+ +    A  +   M
Sbjct: 444 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 503

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+  L+   C   K  EA    Q+M  +G        + L+   L  G +
Sbjct: 504 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 563

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++VN M+ +G  LD  T+N LI+ +C++G +E  + ++  +   GL  +  +  IL
Sbjct: 564 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL 623

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G I  A   L +++  G  P    Y  +I G+ + G+  +A   F +++++G 
Sbjct: 624 INGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y  LI+   + G F +A   L    + G  P
Sbjct: 684 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 720



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
             ++ M    L+++    + +I    K   V +A+ +F   ++  C+  +  +NSL+F L
Sbjct: 463 NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 522

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V  F  A  L + M+ +G + +  TY  L++A+   G M+EA + + +M  +G     
Sbjct: 523 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 582

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++ L  AG +E    +   M+ +G   +  + N LI  +C++G ++  +E    
Sbjct: 583 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 642

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D+ TY  LI  + K G   EA  L   L  +G  P    Y  +I    + G 
Sbjct: 643 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGM 702

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           FDDA    S     G  PN   + +L++
Sbjct: 703 FDDAHLLLSRGVDSGFIPNEVTWYILVS 730



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +  ++ ALC V     A AL++ M R G VP+   Y  L++A    G++ E  + L+
Sbjct: 235 VYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLE 294

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P V   +  + GL     +  A ++V++M+ +GF  +  T+  L+  +C+ G
Sbjct: 295 EMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMG 354

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH-NLVEDGHKPFPSLY 230
           +V+    +   V       +V  +  LI      G +DEA  ++H +++  G  P    Y
Sbjct: 355 KVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 410

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G+ ++G    A    +EM+IKG  PN   YT+LI    + GR  EA N L EM+ 
Sbjct: 411 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 470

Query: 291 MGLT 294
            GL 
Sbjct: 471 KGLA 474



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 135/345 (39%), Gaps = 74/345 (21%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA--------- 61
           Y   V  + L L+ E       VD+A  +    T   C    ++Y +L+ A         
Sbjct: 236 YTFGVVMKALCLVNE-------VDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNE 288

Query: 62  --------------------------LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
                                     LC++   H A  L+ RM+ +GF P+  TY +L++
Sbjct: 289 VLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMH 348

Query: 96  AWCSSGKMREAQEFL--------------------------------QEMSDKGFNPPVR 123
             C  GK+ EA+  L                                + M   G  P + 
Sbjct: 349 GLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIF 408

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL   GYL SA++++N+M  +G   ++ T+  LI+  CK G +E    +   +
Sbjct: 409 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 468

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              GL  +   Y  LI A+ K   + +A  +  ++   G KP    +  +I G+ +  +F
Sbjct: 469 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 528

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           ++A   + +M ++G   N   Y  LI    R G   EA   + +M
Sbjct: 529 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 573



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P  R+Y ++++   +    +       EM  KG +P V    ++++ L     ++SA  +
Sbjct: 198 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 257

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M + G V +   + +LI  + K G V   +++   +  +G   DV+T+   I  + K
Sbjct: 258 LKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 317

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              I EA +L+  ++  G  P    Y  ++ G+ R G+ D+A    +++      PN  +
Sbjct: 318 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVL 373

Query: 265 YTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +  LI      GR  EA   + E M  +G  P    ++ +  GL  C K  L    EL+ 
Sbjct: 374 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGL--CKKGYLVSARELMN 431



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   + G ++  + +F    +       +  N L+  LC       A   +R M
Sbjct: 584 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 643

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PD  TY  L+N  C +G+ +EA     ++  +G  P     + L+      G  
Sbjct: 644 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMF 703

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           + A  ++++ +  GF+ +  T+  L+    K G+ EF
Sbjct: 704 DDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQEF 740


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+ +SP T   +++     G +D A  +  +  A  C+  V++Y +L+    +   
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +++ M  +G  PD   Y  L+     + +M EA+ FL EM + G  P       
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + G + A    SA + V +M + G + +      LI   CK G+V      Y S+   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  TY +L+  + K   +D+A  +   +   G  P    Y  +I G  + G    A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  +G  PN  +Y ML+    R G   +A   L EM+  GL P +  +  + DG 
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 308 KNCGKHDLAEKIELLE 323
             C   DLAE   L +
Sbjct: 708 --CKSGDLAEAFRLFD 721



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 144/312 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S+   T SL+I+   K    D A  + ++  +        +Y+  +  + +  +
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL   MI  G +P  + YA L+  +C    +R+  E L EM  +           
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V+G+ ++G L+ A  +V +MI  G   ++  + +LI+T  ++      + +   + + G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  Y  LI  +SKA  +DEA   L  +VE+G KP    Y   I G     +F  A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  EM+  G  PN+ + T LI    + G+ +EA +    M + G+   ++ + ++ +GL
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602

Query: 308 KNCGKHDLAEKI 319
               K D AE+I
Sbjct: 603 FKNDKVDDAEEI 614



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 2/260 (0%)

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
           GA  L   MI KG VP K TY +L++  C   ++ +A+  L EM   G +       LL+
Sbjct: 260 GALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLI 319

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GLL     ++AK +V++M+  G  +    ++  I  + K G +E    ++  +   GL 
Sbjct: 320 DGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLI 379

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                Y  LI    +   + + + LL  + +      P  Y  ++KGM   G  D A+  
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             EM   G  PN  +YT LI    +  RF +A   L EM E G+ P   C++ +  GL  
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 310 CGKHDLAEK--IELLEVSLR 327
             + D A    +E++E  L+
Sbjct: 500 AKRMDEARSFLVEMVENGLK 519



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  LC++K    A +L+  M   G   D  TY++L++          A+  + EM 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G N      D  +  +   G +E AK + + MI  G +   + + SLIE  C+   V 
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + K  +     TY  ++  +  +G +D A+ ++  ++  G +P   +Y  +I
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           K   +  +F DA     EMK +G  P+   Y  LI    +  R  EA ++LVEM E GL 
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519

Query: 295 P 295
           P
Sbjct: 520 P 520



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M+ +G + D +TY +L+N    + K+ +A+E  +EM  KG  P V    +L+ G    
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A  + ++M+++G   ++  +N L+   C+SGE+E   E+   +   GL  +  TY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    K+G + EAFRL   +   G  P   +Y  ++ G  R    + A   F   K 
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK- 759

Query: 256 KGHPPNRPVYTMLITMCGRGGR 277
           KG   +   +  LI    + G+
Sbjct: 760 KGCASSTAPFNALINWVFKFGK 781



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 16/318 (5%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P   S  ++I  F K G +  A  +F++         V++YN LL   C       A 
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  P+  TY  +++ +C SG + EA     EM  KG  P       LV G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE-----MYYSVCKLG 187
                +E A  +     K+G       FN+LI  + K G+ E   E     M  S  + G
Sbjct: 743 CRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY I+I  + K G ++ A  L H +      P    Y  ++ G  + G+  + F
Sbjct: 802 KPNDV-TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMF 860

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT------PISRCFD 301
             F E    G  P+  +Y+++I    + G   +A   + +M             IS C  
Sbjct: 861 PVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 302 LVTDGLKNCGKHDLAEKI 319
           L++ G    G+ ++AEK+
Sbjct: 921 LLS-GFAKVGEMEVAEKV 937



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 7/285 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
             +T ++++    K+  VD+A E+F +         V  Y  L+    ++     A ++ 
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+   Y +L+  +C SG++ +A+E L EMS KG +P       ++ G   +
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A ++ ++M  +G V D   + +L++  C+  +VE  + + +   K G  +  + +
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI-FGTNKKGCASSTAPF 769

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGH-----KPFPSLYAPIIKGMFRRGQFDDAFCFF 250
             LI  V K G  +    +L+ L+ DG      KP    Y  +I  + + G  + A   F
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELF 828

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+     P    YT L+    + GR  E      E    G+ P
Sbjct: 829 HQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 22/291 (7%)

Query: 33  VDNAVEVFNKCTAFNC----QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           ++ AV VF+            +C +L ++LL     + LF   Y   + M+ +  V D +
Sbjct: 167 IEEAVFVFSSSMGLELVPRLSRCKVLLDALL-RWNRLDLFWDVY---KGMVERNVVFDVK 222

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+ A C +G ++  ++ L + ++K F    R   L V G L         ++   M
Sbjct: 223 TYHMLIIAHCRAGNVQLGKDVLFK-TEKEF----RTATLNVDGAL---------KLKESM 268

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           I +G V    T++ LI+ +CK   +E    +   +  LG+  D  TY +LI  + K    
Sbjct: 269 ICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNA 328

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A  L+H +V  G    P +Y   I  M + G  + A   F  M   G  P    Y  L
Sbjct: 329 DAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL 388

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    R     +    LVEM +  +      +  V  G+ + G  D A  I
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 113/263 (42%), Gaps = 30/263 (11%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++ L   LC    F  A +++ RMI + + P    ++ +V         R +QEF+ + S
Sbjct: 100 FSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIV---------RCSQEFVGK-S 148

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G    + G  +L  G +   Y+E A  + +  +    V  L     L++ + +   ++
Sbjct: 149 DDGV---LFG--ILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD 203

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++Y  + +  +  DV TY +LI A  +AG +    +L  +++    K F +    + 
Sbjct: 204 LFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNV----QLGKDVLFKTEKEFRTATLNV- 258

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
                    D A      M  KG  P +  Y +LI    +  R  +A + LVEM  +G++
Sbjct: 259 ---------DGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVS 309

Query: 295 PISRCFDLVTDGLKNCGKHDLAE 317
             +  + L+ DGL      D A+
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAK 332



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY I+++  C  G +  A+E   +M +    P V     L+ G    G       +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSG---------EVEFCVEMYYSVCKLGLCADVSTY 195
            ++ I  G   D   ++ +I    K G         +  F        CKL     +ST 
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS----ISTC 918

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           + L+   +K G ++ A +++ N+V   + P
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIP 948


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 153/342 (44%), Gaps = 34/342 (9%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++ +   K G +D A E+  + +   C   ++ YN+L+  LC+      AY L+  +
Sbjct: 368 TYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESL 427

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GFVPD  TY I+V+  C  G++ +A + ++ M  +G  P V     L++GL   G +
Sbjct: 428 VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 487

Query: 139 ESAKQMVNKMIKQGFVLD--------------------------------LETFNSLIET 166
           + A  +  +M+ +    D                                ++ +N+L++ 
Sbjct: 488 DEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDG 547

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK G ++    ++  +   G   ++ TY I++  + K G +DEAF  L ++   G  P 
Sbjct: 548 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 607

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  II G+F+  +  +A     +M   G PP+   Y  L+    +  RF +A   L 
Sbjct: 608 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILK 667

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            M + G+ P +  ++ +  GL    +  L +  EL+   LR+
Sbjct: 668 NMIKAGVDPDNVTYNTLISGLSQTNR--LGDAYELMHEMLRN 707



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 4/299 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++   F K G + +A+E+F    + +     + YN+++   C      GA   ++ M  
Sbjct: 199 TILTRAFCKTGRLKDALEIFRNIPSPD----AIAYNAIIHGHCRKNDCDGALEFLKEMNE 254

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  TY IL++  C + K  +A E L EM D+G  P     + ++ GL  AG  E 
Sbjct: 255 RKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 314

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++  M ++       T+N+LI  +CK   V+   ++       G   DV TY IL  
Sbjct: 315 AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILAD 374

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G IDEAF L+  +   G  P    Y  +I G+ +  + + A+     +   G  P
Sbjct: 375 GLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVP 434

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   YT+++    + GR  +A   +  M + G TP    +  + +GL   G+ D A  I
Sbjct: 435 DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHI 493



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 156/348 (44%), Gaps = 37/348 (10%)

Query: 5   IELMKPYN-LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +E +K  N   V+P   T +++I+   K    D A E+ ++          + +NS++  
Sbjct: 246 LEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDG 305

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+   F  A++L+  M  +   P   TY  L++  C    +  A++ + E    GF P 
Sbjct: 306 LCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPD 365

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L  GL   G ++ A ++V +M  +G   +L T+N+LI+ +CK+ + E   E+  
Sbjct: 366 VVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S+   G   DV TY I++  + K G +D+A +++  +++ G  P    Y  +++G+ R G
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485

Query: 242 QFDDAFCFFSEM---------------------------------KIKGHPPNRPVYTML 268
           + D+A   F EM                                  I+G  P   VY  L
Sbjct: 486 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG-TPYIDVYNAL 544

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +    + GR  E  N   +M   G  P  + +++V DGL   GK D A
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 592



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 137/306 (44%), Gaps = 2/306 (0%)

Query: 16  SPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   II    +    D A+E   +         V  YN L+  LC+      A  
Sbjct: 223 SPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASE 282

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M+ +G  PD  T+  +++  C +GK   A   L  M+++   P     + L+ GL 
Sbjct: 283 MLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLC 342

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               ++ AK +V++ +  GFV D+ T++ L + +CK G ++   E+   +   G   ++ 
Sbjct: 343 KQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLV 402

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  + KA   ++A+ LL +LV  G  P    Y  I+ G+ + G+ D A      M
Sbjct: 403 TYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM 462

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P+   YT L+    R GR  EA +   EM     T  +  +  + +G     + 
Sbjct: 463 LKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRT 522

Query: 314 DLAEKI 319
             A+K+
Sbjct: 523 KEAQKV 528



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 135/301 (44%), Gaps = 4/301 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  L+I+   +   +D A  + +K      +  V +Y  L  A C+      A  + R +
Sbjct: 162 TYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI 221

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD   Y  +++  C       A EFL+EM+++   P V   ++L+ GL  A   
Sbjct: 222 PS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKT 277

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M+++M+ +G   D  TFNS+++ +CK+G+ E    +   + +        TY  L
Sbjct: 278 DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 337

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   +D A  L+   V  G  P    Y+ +  G+ +RG+ D+AF    EM  KG 
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGC 397

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI    +  +  +A   L  +   G  P    + ++ DGL   G+ D A K
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 319 I 319
           +
Sbjct: 458 M 458



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 132/291 (45%), Gaps = 6/291 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++I++   K G +D A+++        C   V+ Y +L+  LC       A+ + + M
Sbjct: 438 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 497

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K    D   Y  LVN +C S + +EAQ+ +  +      P +   + L+ G    G L
Sbjct: 498 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRL 554

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    +   M  +G V +++T+N +++ +CK G+V+       S+   G   DV +Y I+
Sbjct: 555 DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNII 614

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA    EA ++L  +++ G  P    Y  ++    +  +FDDA      M   G 
Sbjct: 615 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 674

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC--FDLVTDGL 307
            P+   Y  LI+   +  R  +A   + EM   G   +S C  ++ + D L
Sbjct: 675 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCV-VSACTTYNTIIDRL 724



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 33/322 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M     + S  T + ++E   + G VD A  +F +  + +C    L Y SL+   
Sbjct: 457 KMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGY 516

Query: 63  CEVKLFHGAYALI--------------------------------RRMIRKGFVPDKRTY 90
           C+      A  ++                                  M  +G VP+ +TY
Sbjct: 517 CKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY 576

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++  C  GK+ EA  FL+ M   G  P V   ++++ GL  A   + A+Q++++MI+
Sbjct: 577 NIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQ 636

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+N+L+   CK    +  V +  ++ K G+  D  TY  LI  +S+   + +
Sbjct: 637 AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGD 696

Query: 211 AFRLLHNLVEDGHKPFP-SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           A+ L+H ++ +G      + Y  II  + + G    A      M   G   N   Y + I
Sbjct: 697 AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFI 756

Query: 270 TMCGRGGRFVEAANYLVEMTEM 291
               + GR  EA++ L EM  +
Sbjct: 757 DRLCKEGRLDEASSLLSEMDTL 778



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 147/314 (46%), Gaps = 6/314 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++++   KHG VD A        +  C   V+ YN ++  L +      A  ++ +
Sbjct: 574 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 633

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI+ G  PD  TY  L+  +C   +  +A   L+ M   G +P     + L+ GL     
Sbjct: 634 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 693

Query: 138 LESAKQMVNKMIKQGFVLDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           L  A +++++M++ G V+    T+N++I+ +CK G ++  + +   +   G+ A+  TY 
Sbjct: 694 LGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 753

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KI 255
           I I  + K G +DEA  LL  +  D  +   S Y  +I G+ +  Q D A     EM  +
Sbjct: 754 IFIDRLCKEGRLDEASSLLSEM--DTLRDEVS-YTTVIIGLCKAEQLDRASKLAREMVAV 810

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG       + +LI    +  R  EA   L  M + G +P    +++V   L    K D 
Sbjct: 811 KGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDK 870

Query: 316 AEKIELLEVSLRSV 329
           A ++   E+++R +
Sbjct: 871 AWEL-FDEMAVRGI 883



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 7/273 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++ +F K    D+AV +             + YN+L+  L +      AY L+  M
Sbjct: 645 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704

Query: 79  IRKGFVPDK-RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +R G V     TY  +++  C  G +++A   +  M+  G        ++ +  L   G 
Sbjct: 705 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGR 764

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYK 196
           L+ A  ++++M     + D  ++ ++I  +CK+ +++   ++   +  + GLC    T+ 
Sbjct: 765 LDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFN 821

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +LI A +K   +DEA  LL  +V+ G  P    Y  +I  + +  + D A+  F EM ++
Sbjct: 822 LLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 881

Query: 257 GHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEM 288
           G   +   YT+LI  +CG+ GR  EA   L EM
Sbjct: 882 GIVASSVSYTVLIYGLCGQ-GRGKEALQVLEEM 913



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 4/211 (1%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F     D+GF      R+  +Q LL  G  +    M  +M+  G+  D  T++ +I+++C
Sbjct: 112 FFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLC 171

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           +  +++    M       G   +VS Y IL  A  K G + +A  +  N+      P   
Sbjct: 172 QMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI----PSPDAI 227

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  II G  R+   D A  F  EM  +   P+   Y +LI    +  +  +A+  L EM
Sbjct: 228 AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEM 287

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G+TP +  F+ + DGL   GK + A  +
Sbjct: 288 VDRGVTPDTVTFNSIMDGLCKAGKFERAHSL 318



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 109/274 (39%), Gaps = 33/274 (12%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +GF     T    +     +G         + M D G+ P      L+++ L     ++ 
Sbjct: 119 RGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDK 178

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---------------CK 185
           A  M++K   +GF  ++  +  L    CK+G ++  +E++ ++               C+
Sbjct: 179 AFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCR 238

Query: 186 LGLC----------------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
              C                 DV TY ILI  + KA   D+A  +LH +V+ G  P    
Sbjct: 239 KNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVT 298

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           +  I+ G+ + G+F+ A    + M  +   P+   Y  LI+   +      A + + E  
Sbjct: 299 FNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFV 358

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             G  P    + ++ DGL  C +  + E  EL++
Sbjct: 359 SSGFVPDVVTYSILADGL--CKRGRIDEAFELVK 390



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++    L ++  T +L+I+ F K   +D A+ +        C   V+ YN ++  LC++
Sbjct: 806 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKL 865

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
                A+ L   M  +G V    +Y +L+   C  G+ +EA + L+EM+
Sbjct: 866 DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMA 914


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 137/281 (48%), Gaps = 2/281 (0%)

Query: 38  EVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           E+ N  + +  NC+  V+ Y+ ++  LC+V     A  L   M  +G +PD  +Y+ L++
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C +GK  +++    EM D+G  P +    +L+  L   G +  AK+++  MI++G V 
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L T+NSLI+  C  G++    E++ S+   GL  D  +Y  LI    K   + EA  L 
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + +++ G  P  + Y  ++KG+F++G+  DA   F  MK  G   N  +Y + +    + 
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKN 460

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               EA     E+           +  + DGL   GK + A
Sbjct: 461 DCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETA 501



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 132/289 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K G V  A ++            ++ YNSL+   C V   + A  L   M
Sbjct: 309 TFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSM 368

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD+ +Y  L+N +C + K++EA     EM   G +P V     L++GL   G +
Sbjct: 369 PSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKV 428

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++   M   G   + + +   ++ +CK+  +   +E++  +       ++  Y  L
Sbjct: 429 GDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCL 488

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG ++ A+ L   L ++G +P    Y  +I G  + GQ D+A   F +M+  G 
Sbjct: 489 IDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGC 548

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+     G +  E    L +M +  ++P +    +V D L
Sbjct: 549 TPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDML 597



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 146/306 (47%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+II+   K G  D A E+F +  A      V+ Y++L+   C    +  +  L   M
Sbjct: 239 TYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEM 298

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  T+++L++  C  GK+ EA++ L+ M  +G  P +   + L+ G    G L
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL 358

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA+++   M  +G   D  ++ +LI   CK+ +V+  + +Y  + ++G   +V+TY  L
Sbjct: 359 NSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTL 418

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + + G + +A +L   +   G      +Y   + G+ +     +A   F+E+K    
Sbjct: 419 LKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNF 478

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD---- 314
             N   Y+ LI    + G+   A     ++++ GL P    ++++  G    G+ D    
Sbjct: 479 KLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANI 538

Query: 315 LAEKIE 320
           L EK+E
Sbjct: 539 LFEKME 544



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 128/274 (46%), Gaps = 6/274 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA----Q 107
           V+ Y +L+  LC       A  L  RM + G  P+  TY  L+   C +G +  A    +
Sbjct: 161 VVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHK 220

Query: 108 EFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           E L + S  G N  P V    +++ GL   G  + AK++  +M  QG + D+ ++++LI 
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C +G+ +    ++  +   G+  D+ T+ +LI  + K G + EA +LL  +++ G  P
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I G    G  + A   F  M  KG  P+   YT LI    +  +  EA N  
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EM ++G +P    +  +  GL   GK   A+K+
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKL 434



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N LL  L ++  +   ++L   M   G  PD  T +IL N  C+  ++ EA   +  + 
Sbjct: 94  FNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGIL 153

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G+ P V     L++GL     +  A ++  +M K G   +  T+ +LI+ +C++G V 
Sbjct: 154 RRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVN 213

Query: 175 FCVEMY---------YSV-CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             ++++         Y V CK G    V TY I+I  + K G  DEA  L   +   G  
Sbjct: 214 IALKLHKEMLNDASQYGVNCKPG----VITYSIIIDGLCKVGREDEAKELFEEMKAQGMI 269

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y+ +I G    G++D +   F EM  +G  P+   +++LI    + G+  EA   
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           L  M + G+ P    ++ + DG   C   DL    EL 
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGF--CMVGDLNSARELF 365



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 4/319 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +     + S +I  F   G  D +  +F++      Q  ++ ++ L+  LC+ 
Sbjct: 261 EEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKE 320

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L+  MI++G VP+  TY  L++ +C  G +  A+E    M  KG  P     
Sbjct: 321 GKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G      ++ A  + N+M++ G   ++ T+ +L++ + + G+V    +++  +  
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKT 440

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+ A+   Y I +  + K   + EA  L + L     K     Y+ +I G+ + G+ + 
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLET 500

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVT 304
           A+  F ++  +G  P+   Y ++I    + G+ V+ AN L E M E G TP    ++ + 
Sbjct: 501 AWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQ-VDNANILFEKMEENGCTPDIIAYNTLL 559

Query: 305 DGLKNCGKHDLAEKIELLE 323
            G   C  + L E I+LL 
Sbjct: 560 CGF--CEGNKLEEVIKLLH 576



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 119/263 (45%), Gaps = 8/263 (3%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+     M+R   +P   ++  L+          +      EM   G +P +    +L  
Sbjct: 75  AFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILAN 134

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L N   +  A   +  ++++G++ ++ T+ +LI+ +C    +     ++  + KLG   
Sbjct: 135 CLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTP 194

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH------KPFPSLYAPIIKGMFRRGQFD 244
           +  TY  LI  + + G ++ A +L   ++ D        KP    Y+ II G+ + G+ D
Sbjct: 195 NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGRED 254

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F EMK +G  P+   Y+ LI      G++ ++ +   EM + G+ P    F ++ 
Sbjct: 255 EAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLI 314

Query: 305 DGLKNCGKHDLAEKIELLEVSLR 327
           D L  C +  + E  +LLEV ++
Sbjct: 315 DTL--CKEGKVTEAKKLLEVMIQ 335



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E +    L     T +++I  F K G VDNA  +F K     C   ++ YN+LL  
Sbjct: 502 WELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCG 561

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            CE         L+ +M++K   P+  +  I+V+  C   K ++  + L
Sbjct: 562 FCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 153/334 (45%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A  +FNK      +  V  YNSL+  LC    +  A  L+  MI + 
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            M   MI +    ++ T+N+LI+  CK+  VE  +E++  + + GL  +  TY  LI  +
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
            +AG  D A ++   +V DG  P                                  P +
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500

Query: 230 YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           Y    +I+GM + G+ +D +  F  + +KG  PN  +YT +I+   R G   EA     E
Sbjct: 501 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 560

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S C++ L+   L++  K   AE I+
Sbjct: 561 MKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 594



 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 143/292 (48%), Gaps = 4/292 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    +  Y+SL+   C       A  +   M
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P+  TY  L+  +C + ++ E  E  +EMS +G        + L+QGL  AG  
Sbjct: 387 ISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 446

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++  KM+  G   D+ T++ L++ +CK G++E  + ++  + K  +  D+ TY I+
Sbjct: 447 DMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  +L   G KP   +Y  +I G  R+G  ++A   F EMK  G 
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGT 566

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDG 306
            P+   Y  LI    R G    +A  + EM   G     + IS   +++ DG
Sbjct: 567 LPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+ +F +         ++ +N LL A+ ++K F    +L  RM       D  +Y I
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C   ++  A   L +M   G+ P +     L+ G  ++  +  A  +V++M++ G
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  TFN+LI  +    +    V +   + + G   D+ TY  ++  + K G ID A 
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + +   +    +Y  II G+ +    DDAF  F++M+ KG  P+   Y  LI+  
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L  M E  + P    F  + D     GK   AEK+
Sbjct: 301 CNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 118/241 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A A++ +M++ G+ PD  T + L+N +C S ++ +A   + +M 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 177

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P     + L+ GL        A  +V++M+++G   DL T+ +++  +CK G+++
Sbjct: 178 EMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDID 237

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + ADV  Y  +I  + K   ID+AF L + +   G +P    Y  +I
Sbjct: 238 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLI 297

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S M  +   PN   ++ LI    + G+ VEA     EM +  + 
Sbjct: 298 SCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357

Query: 295 P 295
           P
Sbjct: 358 P 358



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 135/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS ++  +     + +AV + ++      +   + +N+L+  L        A AL+ +M
Sbjct: 152 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQM 211

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  PD  TY  +VN  C  G +  A   L++M        V   + ++ GL    ++
Sbjct: 212 VQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHI 271

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NKM  +G   D+ T+NSLI  +C  G       +  ++ +  +  +V T+  L
Sbjct: 272 DDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSAL 331

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G + EA +L   +++    P    Y+ +I G     + D+A   F  M  K  
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI    +  R  E      EM++ GL   +  ++ +  GL   G  D+A+K
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQK 451

Query: 319 I 319
           I
Sbjct: 452 I 452



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 128/298 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y +++  LC+      A +L+++M
Sbjct: 187 TFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  +++  C    + +A     +M  KG  P V   + L+  L N G  
Sbjct: 247 EKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRW 306

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TF++LI+   K G++    ++Y  + K  +  D+ TY  L
Sbjct: 307 SDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA  +   ++     P    Y  +IKG  +  + ++    F EM  +G 
Sbjct: 367 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGL 426

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   Y  LI    + G    A     +M   G+ P    + ++ DGL   GK + A
Sbjct: 427 VGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 157/325 (48%), Gaps = 10/325 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ MK    S    T +++I      G++D+A+E  N+    NC+  V+ Y  L+  
Sbjct: 146 YQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILI-- 203

Query: 62  LCEVKLFHG----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
             E  L  G    A  L+  M+     PD  TY  ++   C  G +  A + +  +S KG
Sbjct: 204 --EATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKG 261

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           + P V   ++L++GLLN G  E+  ++++ M+ +G   ++ T++ LI ++C+ G+VE  V
Sbjct: 262 YAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGV 321

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   + K GL  D   Y  LI A+ K G +D A  +L  ++ DG  P    Y  I+  +
Sbjct: 322 GLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACL 381

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++ + D+A   F ++   G  PN   Y  + +     G  V A   ++EM + G+ P  
Sbjct: 382 CKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDG 441

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELL 322
             ++ +   L   G  D  E IELL
Sbjct: 442 ITYNSLISCLCRDGMVD--EAIELL 464



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 6/271 (2%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     +D A++V +          ++ YN+++   C       AY ++ RM  KGF 
Sbjct: 100 HGLFTSKTIDKAIQVMHILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFS 158

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY IL+ + CS G +  A EF  ++  +   P V    +L++  L  G ++ A ++
Sbjct: 159 PDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKL 218

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +++M++     D+ T+NS+I  +C+ G V+   ++  S+   G   DV TY IL+  +  
Sbjct: 219 LDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLN 278

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G  +  + L+ ++V  G +     Y+ +I  + R G+ ++      +MK KG  P+   
Sbjct: 279 QGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYC 338

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           Y  LI    + GR   A   L  M   G  P
Sbjct: 339 YDPLIAALCKEGRVDLAIEVLDVMISDGCVP 369



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 139/273 (50%), Gaps = 3/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+L   L+  L   K    A  ++  +   G  PD   Y  ++  +C + ++  A + L 
Sbjct: 92  VVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDLIAYNAIITGFCRANRIDSAYQVLD 150

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M +KGF+P +   ++L+  L + G L+SA +  N+++K+     + T+  LIE     G
Sbjct: 151 RMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQG 210

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  +++   + ++ L  D+ TY  +I  + + G +D AF+++ ++   G+ P    Y 
Sbjct: 211 GIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYN 270

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +++G+  +G+++  +   S+M  +G   N   Y++LI+   R G+  E    L +M + 
Sbjct: 271 ILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKK 330

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           GL P   C+D +   L   G+ DLA  IE+L+V
Sbjct: 331 GLKPDGYCYDPLIAALCKEGRVDLA--IEVLDV 361



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 134/306 (43%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G +D A+++ ++    N Q  +  YNS++  +C       A+ +I  +
Sbjct: 198 TYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSI 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG+ PD  TY IL+    + GK     E + +M  +G    V    +L+  +   G +
Sbjct: 258 SSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKV 317

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E    ++  M K+G   D   ++ LI  +CK G V+  +E+   +   G   D+  Y  +
Sbjct: 318 EEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTI 377

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K    DEA  +   L E G  P  S Y  +   ++  G    A     EM  KG 
Sbjct: 378 LACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGV 437

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLV--EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y  LI+   R G   EA   LV  EM      P    +++V  GL  C    ++
Sbjct: 438 DPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGL--CKVSRVS 495

Query: 317 EKIELL 322
           + IE+L
Sbjct: 496 DAIEVL 501



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 139/289 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II  F +   +D+A +V ++         ++ YN L+ +LC   +   A     +++++ 
Sbjct: 132 IITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKEN 191

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY IL+ A    G + EA + L EM +    P +   + +++G+   GY++ A 
Sbjct: 192 CKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAF 251

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+++ +  +G+  D+ T+N L+  +   G+ E   E+   +   G  A+V TY +LI +V
Sbjct: 252 QIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSV 311

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G ++E   LL ++ + G KP    Y P+I  + + G+ D A      M   G  P+ 
Sbjct: 312 CRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDI 371

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             Y  ++    +  R  EA +   ++ E+G +P +  ++ +   L + G
Sbjct: 372 VNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTG 420



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 139/307 (45%), Gaps = 2/307 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M   NL     T + II    + G VD A ++ +  ++      V+ YN LL  L
Sbjct: 217 KLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGL 276

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                +   Y L+  M+ +G   +  TY++L+++ C  GK+ E    L++M  KG  P  
Sbjct: 277 LNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDG 336

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              D L+  L   G ++ A ++++ MI  G V D+  +N+++  +CK    +  + ++  
Sbjct: 337 YCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEK 396

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G   + S+Y  +  A+   G    A  ++  +++ G  P    Y  +I  + R G 
Sbjct: 397 LGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGM 456

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCG--RGGRFVEAANYLVEMTEMGLTPISRCF 300
            D+A     +M+++       V +  I + G  +  R  +A   L  M + G  P    +
Sbjct: 457 VDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTY 516

Query: 301 DLVTDGL 307
             + +G+
Sbjct: 517 TFLIEGI 523



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           KAG  +E+   L +LV  GHKP   L   +I G+F     D A      ++  GH P+  
Sbjct: 69  KAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGH-PDLI 127

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            Y  +IT   R  R   A   L  M   G +P    ++++   L + G  D A
Sbjct: 128 AYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSA 180



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 62/178 (34%), Gaps = 38/178 (21%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K    D A+ +F K     C      YNS+  AL        A  +I  M+ KG  PD  
Sbjct: 383 KQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGI 442

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMS---------------------------------- 114
           TY  L++  C  G + EA E L +M                                   
Sbjct: 443 TYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLA 502

Query: 115 ---DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
              DKG  P       L++G+   G L  A+ +   ++    + +  +F  L +T CK
Sbjct: 503 AMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNMDAISE-HSFERLYKTFCK 559



 Score = 43.9 bits (102), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF--NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T + +I    + G+VD A+E+    +  +  C+  V+ YN +L  LC+V     A  ++ 
Sbjct: 443 TYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLA 502

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
            M+ KG  P++ TY  L+      G + +A++ 
Sbjct: 503 AMVDKGCRPNETTYTFLIEGIGFGGCLNDARDL 535


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+ +SP T   +++     G +D A  +  +  A  C+  V++Y +L+    +   
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +++ M  +G  PD   Y  L+     + +M EA+ FL EM + G  P       
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + G + A    SA + V +M + G + +      LI   CK G+V      Y S+   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  TY +L+  + K   +D+A  +   +   G  P    Y  +I G  + G    A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  +G  PN  +Y ML+    R G   +A   L EM+  GL P +  +  + DG 
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 308 KNCGKHDLAEKIELLE 323
             C   DLAE   L +
Sbjct: 708 --CKSGDLAEAFRLFD 721



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 144/312 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S+   T SL+I+   K    D A  + ++  +        +Y+  +  + +  +
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL   MI  G +P  + YA L+  +C    +R+  E L EM  +           
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V+G+ ++G L+ A  +V +MI  G   ++  + +LI+T  ++      + +   + + G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  Y  LI  +SKA  +DEA   L  +VE+G KP    Y   I G     +F  A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  EM+  G  PN+ + T LI    + G+ +EA +    M + G+   ++ + ++ +GL
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602

Query: 308 KNCGKHDLAEKI 319
               K D AE+I
Sbjct: 603 FKNDKVDDAEEI 614



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 2/260 (0%)

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
           GA  L   MI KG VP K TY +L++  C   ++ +A+  L EM   G +       LL+
Sbjct: 260 GALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLI 319

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GLL     ++AK +V++M+  G  +    ++  I  + K G +E    ++  +   GL 
Sbjct: 320 DGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLI 379

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                Y  LI    +   + + + LL  + +      P  Y  ++KGM   G  D A+  
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             EM   G  PN  +YT LI    +  RF +A   L EM E G+ P   C++ +  GL  
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 310 CGKHDLAEK--IELLEVSLR 327
             + D A    +E++E  L+
Sbjct: 500 AKRMDEARSFLVEMVENGLK 519



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  LC++K    A +L+  M   G   D  TY++L++          A+  + EM 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G N      D  +  +   G +E AK + + MI  G +   + + SLIE  C+   V 
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + K  +     TY  ++  +  +G +D A+ ++  ++  G +P   +Y  +I
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           K   +  +F DA     EMK +G  P+   Y  LI    +  R  EA ++LVEM E GL 
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519

Query: 295 P 295
           P
Sbjct: 520 P 520



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 1/202 (0%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M+ +G + D +TY +L+N    + K+ +A+E  +EM  KG  P V    +L+ G    
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL 640

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A  + ++M+++G   ++  +N L+   C+SGE+E   E+   +   GL  +  TY
Sbjct: 641 GNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    K+G + EAFRL   +   G  P   +Y  ++ G  R    + A   F   K 
Sbjct: 701 CTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNK- 759

Query: 256 KGHPPNRPVYTMLITMCGRGGR 277
           KG   +   +  LI    + G+
Sbjct: 760 KGCASSTAPFNALINWVFKFGK 781



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 16/318 (5%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P   S  ++I  F K G +  A  +F++         V++YN LL   C       A 
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  P+  TY  +++ +C SG + EA     EM  KG  P       LV G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE-----MYYSVCKLG 187
                +E A  +     K+G       FN+LI  + K G+ E   E     M  S  + G
Sbjct: 743 CRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY I+I  + K G ++ A  L H +      P    Y  ++ G  + G+  + F
Sbjct: 802 KPNDV-TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMF 860

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT------PISRCFD 301
             F E    G  P+  +Y+++I    + G   +A   + +M             IS C  
Sbjct: 861 PVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 302 LVTDGLKNCGKHDLAEKI 319
           L++ G    G+ ++AEK+
Sbjct: 921 LLS-GFAKVGEMEVAEKV 937



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 7/285 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
             +T ++++    K+  VD+A E+F +         V  Y  L+    ++     A ++ 
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+   Y +L+  +C SG++ +A+E L EMS KG +P       ++ G   +
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A ++ ++M  +G V D   + +L++  C+  +VE  + + +   K G  +  + +
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI-FGTNKKGCASSTAPF 769

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGH-----KPFPSLYAPIIKGMFRRGQFDDAFCFF 250
             LI  V K G  +    +L+ L+ DG      KP    Y  +I  + + G  + A   F
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELF 828

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+     P    YT L+    + GR  E      E    G+ P
Sbjct: 829 HQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 22/302 (7%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNC----QQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           ++ + +   G ++ AV VF+            +C +L ++LL     + LF   Y   + 
Sbjct: 156 ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALL-RWNRLDLFWDVY---KG 211

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +  V D +TY +L+ A C +G ++  ++ L + ++K F    R   L V G L    
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFK-TEKEF----RTATLNVDGAL---- 262

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
                ++   MI +G V    T++ LI+ +CK   +E    +   +  LG+  D  TY +
Sbjct: 263 -----KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + K    D A  L+H +V  G    P +Y   I  M + G  + A   F  M   G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P    Y  LI    R     +    LVEM +  +      +  V  G+ + G  D A 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 318 KI 319
            I
Sbjct: 438 NI 439



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 30/263 (11%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++ L   LC    F  A +++ RMI + + P    ++ +V         R +QEF+ + S
Sbjct: 100 FSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIV---------RCSQEFVGK-S 148

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G    + G  +L  G +  GY+E A  + +  +    V  L     L++ + +   ++
Sbjct: 149 DDGV---LFG--ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD 203

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++Y  + +  +  DV TY +LI A  +AG +    +L  +++    K F +    + 
Sbjct: 204 LFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNV----QLGKDVLFKTEKEFRTATLNV- 258

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
                    D A      M  KG  P +  Y +LI    +  R  +A + LVEM  +G++
Sbjct: 259 ---------DGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVS 309

Query: 295 PISRCFDLVTDGLKNCGKHDLAE 317
             +  + L+ DGL      D A+
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAK 332



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY I+++  C  G +  A+E   +M +    P V     L+ G    G       +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSG---------EVEFCVEMYYSVCKLGLCADVSTY 195
            ++ I  G   D   ++ +I    K G         +  F        CKL     +ST 
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS----ISTC 918

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           + L+   +K G ++ A +++ N+V   + P
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIP 948


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 149/342 (43%), Gaps = 37/342 (10%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P   T + +I    K G V  A  + ++   ++    V  Y SL+   C  +   
Sbjct: 191 NSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 250

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL-- 127
            A+ +  RM+++G  P+  TY+ L+N  C+ G++ EA + L+EM +KG  P V    L  
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPI 310

Query: 128 ---------------------------------LVQGLLNAGYLESAKQMVNKMIKQGFV 154
                                            L+ GL   G LE A  + +KM+K+G V
Sbjct: 311 TALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLV 370

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  T+N+LI  +C  G     +++++ +   G  A+  TY  +I  +   G I++A  L
Sbjct: 371 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 430

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +++ G  P    Y  +I G   +G  ++A      MK  G  P+   Y  L++   +
Sbjct: 431 FEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSK 490

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            G+   A+ Y  EM E GL P    +  + DG    GK D+A
Sbjct: 491 WGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIA 532



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 118/272 (43%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  V  Y +L+  L  +     A  L  +M+++G VP+  TY  L+N  C  G+   A 
Sbjct: 334 CRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTAL 393

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           +    M   G     +  + +++GL   G +E A  +  KM+K G +  + T+N+LI   
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              G V     +   + + G   D  TY  L+   SK G ++ A      +VE G  P P
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G  + G+ D A      M+  G  PN   Y  +I    +  RF EA     +
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M E GL P    +  + DGL   G+   A KI
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 132/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E    G    A+++F+             YN ++  LC       A  L  +M
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P   TY  L+N + + G +  A   L  M + G  P     + LV G    G L
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA     +M++ G   +  ++ +LI+   K G+V+  + +   + ++G   +V +Y  +
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK     EA ++   +VE G  P    Y  +I G+ R G+   AF  F +M+ +  
Sbjct: 555 INGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKC 614

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y+ LI    + G+  EA   L EM   GL P    F  + DG    G+ D A
Sbjct: 615 LPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 672



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 4/308 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K    M+ +    + QT + II+     G ++ A+ +F K         V+ YN+L+   
Sbjct: 394 KIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGY 453

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 + A  L+  M   G  PD+ TY  LV+ +   GK+  A  + QEM + G NP  
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  ++ +M + G   ++E++N++I  + K        ++   
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRR 240
           + + GL  +V TY  LI  + + G    AF++ H++  +  K  P+L  Y+ +I G+ + 
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM--EKRKCLPNLYTYSSLIYGLCQE 631

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A     EM+ KG  P+   +T LI      GR   A   L  M +MG  P  R +
Sbjct: 632 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691

Query: 301 DLVTDGLK 308
            ++  GL+
Sbjct: 692 SVLLKGLQ 699



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 128/272 (47%), Gaps = 2/272 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL  L + ++  GA  L ++M+  G  P   T+  L+N     GK+REA+  L ++  
Sbjct: 167 NTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQ 226

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
              +P V     L+ G      L+ A  + ++M+K+G   +  T+++LI  +C  G V+ 
Sbjct: 227 YDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDE 286

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            ++M   + + G+   V TY + I A+      +EA  L+  + + G +P    Y  +I 
Sbjct: 287 ALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALIS 346

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ R G+ + A   + +M  +G  PN   Y  LI     GGRF  A      M   G   
Sbjct: 347 GLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLA 406

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            ++ ++ +  GL  C   D+ + + L E  L+
Sbjct: 407 NTQTYNEIIKGL--CLGGDIEKAMVLFEKMLK 436



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 1/245 (0%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           +++ R++R + F P      +++ A  +  ++R   +FL E+S  GF   +   + L+  
Sbjct: 113 SMLNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQ 172

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     +E A+ +  +M+  G    L TFN+LI  + K G+V     +   + +  L  D
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI    +   +D AF +   +V++G  P    Y+ +I G+   G+ D+A     
Sbjct: 233 VFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLE 292

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  P    YT+ IT         EA   +  M + G  P  + +  +  GL   G
Sbjct: 293 EMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLG 352

Query: 312 KHDLA 316
           K ++A
Sbjct: 353 KLEVA 357



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 99/207 (47%), Gaps = 2/207 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +P + + +I+   K G VD A+ +  +     C   V  YN+++  L +   F  A 
Sbjct: 509 LNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAE 568

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M+ +G +P+  TY  L++  C +G+ + A +   +M  +   P +     L+ GL
Sbjct: 569 KICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 628

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G  + A+ ++ +M ++G   D  TF SLI+     G ++    +   +  +G   + 
Sbjct: 629 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNY 688

Query: 193 STYKILIPAVSKAGMI--DEAFRLLHN 217
            TY +L+  + K  ++  ++ F L+ N
Sbjct: 689 RTYSVLLKGLQKECLLLEEKIFPLVDN 715


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 140/287 (48%), Gaps = 22/287 (7%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  +++YN+++ ++C+ KL + A+ L   M+ K   PD  TY  L+N +C  GK+++A  
Sbjct: 238 QPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIG 297

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
              +M+ +  NP V   ++LV      G ++ AK  +  M+KQG   D+ T+NSL++  C
Sbjct: 298 LFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYC 357

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP-FP 227
              EV     ++ ++   G+ A+V +Y I+I    K  M+D+A +L   +    HK  FP
Sbjct: 358 LVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEM---HHKQIFP 414

Query: 228 SL--YAPIIKG----------------MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           ++  Y+ +I G                M  RGQ  D      ++K +G  PN   YT+LI
Sbjct: 415 NVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILI 474

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +GGR  +A N   ++   G       + ++  G  N G  D A
Sbjct: 475 DGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEA 521



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 144/311 (46%), Gaps = 16/311 (5%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  L ++A +++++  +      V  YN+L+   C V     A  L  +M  + 
Sbjct: 247 IIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSEN 306

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T+ ILV+A+C  G+++EA+  L  M  +G  P V   + L+        +  AK
Sbjct: 307 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAK 366

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + N M  +G   ++ +++ +I   CK   V+  ++++  +    +  +V TY  LI  +
Sbjct: 367 SIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGL 426

Query: 203 SKAGMIDEAFRLLHNLVEDGHKP--------------FPSL--YAPIIKGMFRRGQFDDA 246
            K+G I  A  L   + + G +P               P++  Y  +I G+ + G+ +DA
Sbjct: 427 CKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDA 486

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F ++ +KG+      YT++I      G F EA   L +M +    P +  ++++   
Sbjct: 487 RNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRS 546

Query: 307 LKNCGKHDLAE 317
           L +  ++D AE
Sbjct: 547 LFDNDENDKAE 557



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 16/286 (5%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I  F   G + +A+ +FNK T+ N    V  +N L+ A C+      A   +  
Sbjct: 277 NTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAM 336

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+++G  PD  TY  L++ +C   ++ +A+     MS +G    VR   +++        
Sbjct: 337 MMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKM 396

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS---- 193
           ++ A ++  +M  +    ++ T++SLI+ +CKSG + + +E+   +   G   D+     
Sbjct: 397 VDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTR 456

Query: 194 ------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                       TY ILI  + K G +++A  +  +L+  G+    + Y  +I G   +G
Sbjct: 457 QLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKG 516

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            FD+A    S+MK     PN   Y ++I          +A N+ V+
Sbjct: 517 LFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFDNDENDKAENFFVK 562



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 89/213 (41%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           S   R   + L+ +  K   P +   + ++  +        A  + ++M+ +    D+ T
Sbjct: 219 SLSQRAPLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNT 278

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N+LI   C  G+++  + ++  +    +  DV T+ IL+ A  K G + EA   L  ++
Sbjct: 279 YNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMM 338

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G KP    Y  ++       + + A   F+ M  +G   N   Y+++I    +     
Sbjct: 339 KQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVD 398

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +A     EM    + P    +  + DGL   G+
Sbjct: 399 QAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGR 431


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 135/304 (44%), Gaps = 2/304 (0%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P T   S++I+     G +D A+ +F       C+Q VLLYN+L+  L         Y
Sbjct: 453 VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECY 512

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M   GF P + T+  +    C    +  A + ++EM   G  P ++   LLV+ L
Sbjct: 513 LLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQL 572

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                   A   + +M+++GF+ D+  +++ I+   K   V+  +E++  +C  G C DV
Sbjct: 573 CKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDV 632

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI    K   + EA  +L  +V  G  P    Y  +I G  + G  D AF   S 
Sbjct: 633 VAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSR 692

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   PN   YT LI      GR  +A +   EM   G +P    F  +  GL  CG 
Sbjct: 693 MVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGW 752

Query: 313 HDLA 316
            D A
Sbjct: 753 PDAA 756



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 152/335 (45%), Gaps = 20/335 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ IE M+   + ++ +T  ++I  F +   VD A+++F K         V +Y++L+  
Sbjct: 288 FELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGG 347

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS--GKMREAQEFLQEMSDKG-- 117
           LC  K    A  L+  M   G  PD +  + L+ A+CS      R  +E L+++  +   
Sbjct: 348 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCSEEVDIYRLIEERLEDLDTEAML 406

Query: 118 ------FNPPVRGRDL-----LVQGLLNAGYLESAKQMVNK--MIKQGFVLDLETFNSLI 164
                  N  V G+ +     L++ +    Y ++ +  VNK  M+K+    D  +F+ +I
Sbjct: 407 LLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFE--VNKFFMVKEMVRPDTTSFSIVI 464

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           + +C +G+++  + ++  + ++G   +V  Y  LI  +S +  ++E + LL  +   G +
Sbjct: 465 DGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFR 524

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    +  I   + RR     A     EM++ GH P    YT+L+    +  R  EA N+
Sbjct: 525 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 584

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           L EM   G  P    +    DG       D A +I
Sbjct: 585 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEI 619



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 116/282 (41%), Gaps = 50/282 (17%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VP+  ++  L+ A   SG +   +  L+EM D G+ P       ++Q   N+   + A  
Sbjct: 196 VPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALS 255

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + N++  +G+V D    + L+ T  K GEV+   E+   +  LG+  +  T+ +LI    
Sbjct: 256 VFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFV 314

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           +   +D+A +L   + + G  P  S+Y  +I G+  + + + A    SEMK  G  P+  
Sbjct: 315 RQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQ 374

Query: 264 VYTMLITMCGR--------------------------------GGRFVEAANYLVE---- 287
           + + LI  C                                   G+ V+ A YL+     
Sbjct: 375 ILSKLIAYCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTG 434

Query: 288 -------------MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                        M +  + P +  F +V DGL N GK DLA
Sbjct: 435 DNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLA 476



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 1/210 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ Y++ +    ++K    A  + R +  +G+ PD   Y  L+N +C   ++ EA + L 
Sbjct: 597 IVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILD 656

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P V   +LL+ G    G ++ A   +++M+ +    ++ T+ +LI+ +C +G
Sbjct: 657 EMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAG 716

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +  + ++  +   G   +  ++  LI  + K G  D A      + E    P   +Y 
Sbjct: 717 RPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGER-ETPDTIVYV 775

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            +I           AF    EM  KG  P+
Sbjct: 776 ALITSFISNKNPTLAFEILKEMVAKGKFPD 805



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 46/98 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I+ + K+G +D A    ++      +  V+ Y +L+  LC       A  L   M
Sbjct: 669 TYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEM 728

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             KG  P++ ++  L++  C  G    A  + +EM ++
Sbjct: 729 RGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGER 766


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 151/301 (50%), Gaps = 2/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++      G++DNA+++FN   +       + YN+++  LC+   F  A+ L+  M
Sbjct: 301 TCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEM 360

Query: 79  IRKGFVPDKRTY-AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
             K   PD  TY AIL     + G++ +A +F  +M +K F P +   ++L++GL   G 
Sbjct: 361 EEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGM 420

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC-KLGLCADVSTYK 196
           L++A ++ N  I +G  +D  T+N++I  +CK G  E   ++   +  K GL  D +TY 
Sbjct: 421 LDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYN 480

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I    + G +++AF+  + +VE   KP       +++G+ R G    A   F+    K
Sbjct: 481 TIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISK 540

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G   +   Y  +I+   + GRF EA + L EM E  L P    ++ +   L + G+ +  
Sbjct: 541 GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRMEAE 600

Query: 317 E 317
           E
Sbjct: 601 E 601



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 141/285 (49%), Gaps = 4/285 (1%)

Query: 26  EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL--FALCEVKLFHGAYALIRRMIRKGF 83
           +FG    +  A+ +  K   F+C      YN++L    LC       +   +  ++  G 
Sbjct: 201 KFGVKNKLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGL 260

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VP + TY  +++ +C  G++ +A +F  +M +K F P +   ++L++GL   G L++A +
Sbjct: 261 VPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALK 320

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + N  I +G  +D  T+N++I  +CK G  E   ++   + +  L  D  TY  ++ A++
Sbjct: 321 LFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALA 380

Query: 204 KA-GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            A G +++AF+  + +VE   KP       +++G+   G  D+A   F+    KG   + 
Sbjct: 381 DAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDA 440

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEM-GLTPISRCFDLVTDG 306
             Y  +I+   + GRF EA + L EM E  GL P    ++ +  G
Sbjct: 441 VTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILG 485


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 143/282 (50%), Gaps = 2/282 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S SP   T +++I+ + K     +  ++  +   + C+   + YN+L+ +L +   +  A
Sbjct: 167 SCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDA 226

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L + M+R+   P   T+ ++++ +C  G++  A E  Q M+D+G  P +   ++++ G
Sbjct: 227 FNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISG 286

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              A  ++ A+Q++ +M + G   D+ T+NS++  +CK+ +V+   E+Y  +   G   D
Sbjct: 287 ACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 346

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V T   LI  + K+  +D+A +LL  +  +G  P    Y  +I G  +  Q D +  FFS
Sbjct: 347 VVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFS 406

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           EM  KG  P    Y+++I    +  R  +    L  M E G+
Sbjct: 407 EMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 126/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K   + +A  +        C   V+ YN+L+   C++     A  L  +M
Sbjct: 104 TYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQM 163

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     PD  TY IL++ +C   + ++  + LQEM   G  P     + L+  L+ +G  
Sbjct: 164 LENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKY 223

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +   M+++       TFN +I+  CK G+++   E++  +   G   D+ TY I+
Sbjct: 224 IDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 283

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    +A  ID+A +LL  + E G  P    Y  I+ G+ +  Q D+A+  +  ++  G+
Sbjct: 284 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 343

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +    + LI    +  R  +A   L EM   G  P
Sbjct: 344 FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAP 380



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 3/271 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN+++  LC+      A    R M R    P   TY ILV+A C S ++ +A   L++M
Sbjct: 70  VYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISDASLILEDM 128

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            + G  P V   + L+ G    G ++ A  + N+M++     D+ T+N LI+  CK    
Sbjct: 129 IEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERP 188

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +   ++   + K G   +  TY  L+ ++ K+G   +AF L   ++    KP    +  +
Sbjct: 189 QDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLM 248

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + GQ D A+  F  M  +G  P+   Y ++I+   R  R  +A   L  MTE G 
Sbjct: 249 IDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGC 308

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            P    ++ +  GL  C    + E  E+ EV
Sbjct: 309 PPDVVTYNSIVSGL--CKASQVDEAYEVYEV 337



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 1/264 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N LL A    K    AY L +  +     PD  TY+ L+N +C +   ++A   L EM  
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P     + +++GL + G ++SA      M ++     + T+  L++ +CKS  +  
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              +   + + G   +V TY  LI    K G +DEA  L + ++E+   P    Y  +I 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  ++ +  D      EM   G  PN   Y  L+    + G++++A N    M      P
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 240

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               F+L+ D     G+ DLA ++
Sbjct: 241 SHFTFNLMIDMFCKVGQLDLAYEL 264



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 126/270 (46%), Gaps = 19/270 (7%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHG----------LVDNAVEVFNKCTAFNCQQCVL--- 53
           L+  Y     PQ  + +++E  K+G          L+D+ V+      AFN  Q +L   
Sbjct: 178 LIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 237

Query: 54  ------LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                  +N ++   C+V     AY L + M  +G +PD  TY I+++  C + ++ +A+
Sbjct: 238 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 297

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           + L+ M++ G  P V   + +V GL  A  ++ A ++   +   G+ LD+ T ++LI+ +
Sbjct: 298 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 357

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKS  ++   ++   + + G   DV  Y ILI    KA  +D++      +++ G  P  
Sbjct: 358 CKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTV 417

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
             Y+ +I  + +  +  D       M  +G
Sbjct: 418 ITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 45.1 bits (105), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 54/116 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  E+++     +   T S +I+   K   +D+A ++  +         V+ Y  L+  
Sbjct: 332 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHG 391

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            C+      + A    M+ KG VP   TY+I+++  C S ++R+    L+ M ++G
Sbjct: 392 FCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 139/293 (47%), Gaps = 2/293 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G VD  + +F K    +C   V  Y  ++ AL E      A  L   M  +G  P+  TY
Sbjct: 53  GRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTY 112

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +++NA C   K+ E +  L EM +KG  P V   + L+ G    G +E+A+++++ M  
Sbjct: 113 TVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHS 172

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                +  T+N LI   C+   V   + +   + +  L   V TY  LI    K G +D 
Sbjct: 173 NSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDS 232

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+RLL+ + E+G  P    Y+  I  + ++G+ ++A   F+ +K KG   N  +YT LI 
Sbjct: 233 AYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALID 292

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              + G+  +A + L  M      P S  ++ + DGL  C +  + E + L+E
Sbjct: 293 GYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGL--CKERKVQEALLLME 343



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 2/310 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M    L  S  T + +I+ + K G+V+ A E+ +   + +C      YN L+   
Sbjct: 130 RILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGF 189

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  K  H A AL+ +M+     P   TY  L++  C  G +  A   L  M++ G  P  
Sbjct: 190 CRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQ 249

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               + +  L   G +E A  + N + ++G   +   + +LI+  CK+G+++    +   
Sbjct: 250 WTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDR 309

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       + STY  LI  + K   + EA  L+ ++++ G K     Y  +I  M + G 
Sbjct: 310 MLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGD 369

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           FD A     +M   G+ P+  +YT  I   C R G   EA + +  M E G+ P +  + 
Sbjct: 370 FDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTR-GNIKEAEDMMSMMFERGVMPDALTYT 428

Query: 302 LVTDGLKNCG 311
           LV D     G
Sbjct: 429 LVIDAYGGLG 438



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 134/302 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++I+    + G    A+ +F++     C+  +  Y  ++ A+C+         ++  
Sbjct: 75  RTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDE 134

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ KG VP   TY  L++ +C  G +  AQE L  M     NP  R  + L+ G      
Sbjct: 135 MVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKN 194

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A  +++KM++      + T+NSLI   CK G ++    +   + + G+  D  TY +
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            I  + K G I+EA  L ++L E G K    +Y  +I G  + G+ DDA      M  + 
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y  LI    +  +  EA   +  M + GL      + ++   +   G  D A 
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAH 374

Query: 318 KI 319
           +I
Sbjct: 375 RI 376



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 33/338 (9%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM    +     T S+ I+   K G ++ A  +FN       +   ++Y +L+  
Sbjct: 234 YRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDG 293

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A +L+ RM+ +  +P+  TY  L++  C   K++EA   ++ M  KG    
Sbjct: 294 YCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCT 353

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+  +L  G  + A +++++M+  G+  D+  + + I   C  G ++   +M  
Sbjct: 354 VPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMS 413

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  TY ++I A    G+++ AF +L  + + G  P    Y+ +IK + +  
Sbjct: 414 MMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473

Query: 242 -----------------------------QFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                                        +F+ A   F +M   G  PN   Y  LI   
Sbjct: 474 LTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGL 533

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            + GR   A      M E G++P     + + + L NC
Sbjct: 534 CKVGRLGVAQKLFDHMNERGVSP----SEAIYNSLLNC 567



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 135/332 (40%), Gaps = 29/332 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L  +  T +++I    K G  D A  + ++  +   Q  V +Y + + A C 
Sbjct: 342 MESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCT 401

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M  +G +PD  TY ++++A+   G +  A + L+ M D G +P    
Sbjct: 402 RGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHT 461

Query: 125 RDLLVQGLLNAGY-----------------------------LESAKQMVNKMIKQGFVL 155
              L++ LL                                  E+A ++  KM++ G   
Sbjct: 462 YSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSP 521

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           ++ T+  LI  +CK G +    +++  + + G+    + Y  L+    + G+  +A RL+
Sbjct: 522 NINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLV 581

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E GH P       +  G++  G  + A   FS +   G+  +   + +LI    + 
Sbjct: 582 GAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKN 641

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           G     +  L  M   G     + + ++ +GL
Sbjct: 642 GLSDGCSELLGVMEARGCQIHPQTYRMLIEGL 673



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%)

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +Y  LI  + + G +DE   +   + ED   P    Y  I+  +F  G+  +A   FSEM
Sbjct: 41  SYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEM 100

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + +G  PN   YT++I    +  +  E    L EM E GL P    ++ + DG    G  
Sbjct: 101 RERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMV 160

Query: 314 DLAEKI 319
           + A++I
Sbjct: 161 EAAQEI 166


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 3/280 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++I      G  + A+E+    + F C+  ++ YN+L+   C+    + A  + + 
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266

Query: 78  MIRKGFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            ++ G V  PD  TY  +++ +C +GKMREA   L +M   G  P     ++LV G   A
Sbjct: 267 -VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKA 325

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G + +A+++  KMI  G   D+ TF SLI+  C+ G+V     ++  +   G+  +  TY
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A+     + +A  LL  L      P P +Y P+I G  + G+ ++A     EM+ 
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           K   P++  +T+LI      GR  EA +   +M  +G +P
Sbjct: 446 KKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 142/316 (44%), Gaps = 5/316 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S + + L  ++  F + G +  A  +  +  +F  + C ++ NSLL  L ++
Sbjct: 127 ECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSLLNTLVKL 184

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L    +R     D +T+ IL+   C  GK  +A E L  MS  G  P +   
Sbjct: 185 DRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTY 244

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSV 183
           + L+QG   +  L  A +M  K +K G V   D+ T+ S+I   CK+G++     +   +
Sbjct: 245 NTLIQGFCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDM 303

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +LG+     T+ +L+   +KAG +  A  +   ++  G  P    +  +I G  R GQ 
Sbjct: 304 LRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQV 363

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              F  + EM  +G  PN   Y++LI       R ++A   L ++    + P    ++ V
Sbjct: 364 SQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPV 423

Query: 304 TDGLKNCGKHDLAEKI 319
            DG    GK + A  I
Sbjct: 424 IDGFCKAGKVNEANVI 439



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ + K G +  A E+  K  +F C   V+ + SL+   C V      + L   M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY+IL+NA C+  ++ +A+E L +++ K   P     + ++ G   AG +
Sbjct: 374 NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKV 433

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V +M K+    D  TF  LI   C  G +   V +++ +  +G   D  T   L
Sbjct: 434 NEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493

Query: 199 IPAVSKAGMIDEAFRL 214
           +  + KAGM  EA+ L
Sbjct: 494 LSCLLKAGMAKEAYHL 509


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 140/280 (50%), Gaps = 3/280 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++I      G  + A+E+    + F C+  ++ YN+L+   C+    + A  + + 
Sbjct: 207 KTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKD 266

Query: 78  MIRKGFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            ++ G V  PD  TY  +++ +C +GKMREA   L +M   G  P     ++LV G   A
Sbjct: 267 -VKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKA 325

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G + +A+++  KMI  G   D+ TF SLI+  C+ G+V     ++  +   G+  +  TY
Sbjct: 326 GEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A+     + +A  LL  L      P P +Y P+I G  + G+ ++A     EM+ 
Sbjct: 386 SILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEK 445

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           K   P++  +T+LI      GR  EA +   +M  +G +P
Sbjct: 446 KKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 142/316 (44%), Gaps = 5/316 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S + + L  ++  F + G +  A  +  +  +F  + C ++ NSLL  L ++
Sbjct: 127 ECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQ--SFEVEGCCMVVNSLLNTLVKL 184

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L    +R     D +T+ IL+   C  GK  +A E L  MS  G  P +   
Sbjct: 185 DRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTY 244

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSV 183
           + L+QG   +  L  A +M  K +K G V   D+ T+ S+I   CK+G++     +   +
Sbjct: 245 NTLIQGFCKSNELNKASEMF-KDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDM 303

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +LG+     T+ +L+   +KAG +  A  +   ++  G  P    +  +I G  R GQ 
Sbjct: 304 LRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQV 363

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              F  + EM  +G  PN   Y++LI       R ++A   L ++    + P    ++ V
Sbjct: 364 SQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPV 423

Query: 304 TDGLKNCGKHDLAEKI 319
            DG    GK + A  I
Sbjct: 424 IDGFCKAGKVNEANVI 439



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ + K G +  A E+  K  +F C   V+ + SL+   C V      + L   M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY+IL+NA C+  ++ +A+E L +++ K   P     + ++ G   AG +
Sbjct: 374 NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKV 433

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V +M K+    D  TF  LI   C  G +   V +++ +  +G   D  T   L
Sbjct: 434 NEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493

Query: 199 IPAVSKAGMIDEAFRL 214
           +  + KAGM  EA+ L
Sbjct: 494 LSCLLKAGMAKEAYHL 509


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 11/309 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA------- 71
           T + +++   K   V+ A+ +FN+     C      +N+++  LC+      A       
Sbjct: 430 TYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLD 489

Query: 72  --YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             + L++RM   G VPD  TY+ L++  CS  ++ +A+  L++M  +   P V  ++ L+
Sbjct: 490 EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLI 549

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL  AG ++ A+++++ M+  G   D+ T+N+L+   C++G+ E   E+   +   GL 
Sbjct: 550 HGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLA 609

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY  L+  + KA  + EA  +   +   G  P    Y  +I G    GQ D     
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 669

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI--SRCFDLVTDGL 307
           F EM   G  P+  VY  L     + GR   A   L E  E   +       +    DGL
Sbjct: 670 FGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGL 729

Query: 308 KNCGKHDLA 316
              GK ++A
Sbjct: 730 LEAGKMEMA 738



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 141/308 (45%), Gaps = 9/308 (2%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    ++  +D AV++F K    N       Y  L+  L +    + A  L ++++ 
Sbjct: 292 NIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLH 351

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P    Y  L++  C +    +A+E   +M+ +G  P     ++++      G LE 
Sbjct: 352 SGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ KMI+ G V D+ T+N++++ +CKS  VE  + ++  + +LG   +  ++  +I 
Sbjct: 412 ACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIIL 471

Query: 201 AVSKA---------GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            + +          G +DEAFRLL  + +DGH P    Y+ +I G+    + DDA     
Sbjct: 472 GLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 531

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +M  +   P       LI    + GR  EA   L  M   G +P    ++ +  G    G
Sbjct: 532 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 591

Query: 312 KHDLAEKI 319
           + + A ++
Sbjct: 592 QTERAREL 599



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-------VKLFHGA 71
           TL++++E F   G VD A E+        C    + Y ++L  LC+       V+LF G 
Sbjct: 214 TLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLF-GD 272

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L          P  R Y I++   C + ++ EA +  ++M+++  +P      +L+ G
Sbjct: 273 RELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDG 332

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AG L  A+ +  K++  G       + SLI  +C +   +   E++  + + G    
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPS 392

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY ++I A  K GM++EA  L+  ++EDGH P    Y  ++ G+ +  + ++A   F+
Sbjct: 393 PVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFN 452

Query: 252 EMKIKGHPPNRPVY-TMLITMCGRG--------GRFVEAANYLVEMTEMGLTPISRCFDL 302
           EM+  G  PNR  + T+++ +C +         G+  EA   L  MT+ G  P    +  
Sbjct: 453 EMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYST 512

Query: 303 VTDGLKNCGKHDLAEKI 319
           +  GL +  + D A  +
Sbjct: 513 LISGLCSIARVDDARHL 529



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 131/334 (39%), Gaps = 44/334 (13%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M   N+S    +  ++I+   K G +++A  +F K          + Y SL+  LC  
Sbjct: 312 EKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMA 371

Query: 66  KLFHGAYA-----------------------------------LIRRMIRKGFVPDKRTY 90
             F  A                                     LI++MI  G VPD  TY
Sbjct: 372 NSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTY 431

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA---------GYLESA 141
             +++  C S ++ EA     EM   G  P  R  + ++ GL            G L+ A
Sbjct: 432 NTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEA 491

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++ +M   G V D+ T+++LI  +C    V+    +   + K      V T   LI  
Sbjct: 492 FRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHG 551

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + KAG I EA  +L  +V  G  P    Y  ++ G  R GQ + A    S+M  +G  PN
Sbjct: 552 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 611

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              YT L++   +  R  EA     +M   G  P
Sbjct: 612 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 645



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 109/272 (40%), Gaps = 37/272 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I        VD+A  +        C+  V+  N+L+  LC+      A  ++  M
Sbjct: 509 TYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAM 568

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  LV+  C +G+   A+E L +M  +G  P V     LV GL  A  L
Sbjct: 569 VSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 628

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------------------ 180
             A  +  +M   G   +L T+ +LI   C +G+V+  ++++                  
Sbjct: 629 PEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTL 688

Query: 181 -YSVCKLGLCADV------------------STYKILIPAVSKAGMIDEAFRLLHNLVED 221
              +CK G  A                      Y+  +  + +AG ++ A   + ++V  
Sbjct: 689 AAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRG 748

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           G  P P   A ++ G+ + GQ  +A     E+
Sbjct: 749 GQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+ +L + +       +++ M+ +G  PD  T+  ++   C +GKM EA+  + EM
Sbjct: 46  VYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEM 105

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +   P       L   L   G +E A Q++  M     V +   +N ++  +CK+  V
Sbjct: 106 RSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARV 161

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+  ++ +  +     +   ++  +  +G IDEA ++     E+  +P       +
Sbjct: 162 DDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYR---ENRREPCLVTLNVL 218

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           ++G   RGQ D A      M  +   P+   Y  ++    + GR  EA
Sbjct: 219 LEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEA 266



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 40/242 (16%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P    +  ++  WC+ G+  EA +    M +     P                
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECHSPYP---------------- 44

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
                               + +N LI+++ K  E E   +M   +   G   D  T+  
Sbjct: 45  --------------------DVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTT 84

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + KAG +DEA  ++  +      P+ +  + +   +  RG  + AF     M +  
Sbjct: 85  ILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPV-- 142

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              N   Y +++    +  R  +A      M+E  +   +   D V  GL + G+ D A 
Sbjct: 143 --ANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEAL 200

Query: 318 KI 319
           ++
Sbjct: 201 QV 202



 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y   +  L E      A   +R M+R G +P     A LV   C SG+  EA+  L+E+
Sbjct: 721 VYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780

Query: 114 SDKGFNPPVRGRDL-LVQGLLNAGY 137
            D  +    RG+    V+ ++  GY
Sbjct: 781 MDLAYGGKARGKAAKFVEEMVGKGY 805


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 140/284 (49%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+++  K      +  V++Y++++ ALC+ +L   AY L   M  KG   D  TY+ L+ 
Sbjct: 183 AIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIY 242

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C  GK++EA   L EM  K  NP V   ++LV  L   G ++ AK ++  M+K     
Sbjct: 243 GFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKP 302

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+ T+++L++      EV+    ++ ++  +G+  DV TY ILI    K  M+DEA  L 
Sbjct: 303 DVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLF 362

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + +    P    Y+ +I G+ + G+    +    EM  +G P N   Y+ LI    + 
Sbjct: 363 KEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKN 422

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G    A     +M + G+ P +  F ++ DGL   G+   A+++
Sbjct: 423 GHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEV 466



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 2/302 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K+ LV  A  +F++ T       V+ Y++L++  C       A  L+  M+ 
Sbjct: 203 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   P+  TY ILV+A C  GK++EA+  L  M      P V     L+ G      ++ 
Sbjct: 263 KTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKK 322

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ + N M   G   D+ T+  LI   CK+  V+  + ++  + +  +   + TY  LI 
Sbjct: 323 AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K+G I   + L+  + + G       Y+ +I G+ + G  D A   F++MK +G  P
Sbjct: 383 GLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRP 442

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           N   +T+L+    +GGR  +A     ++   G       ++++ DG  +C +  L E + 
Sbjct: 443 NTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDG--HCKQGLLEEALT 500

Query: 321 LL 322
           +L
Sbjct: 501 ML 502



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 129/274 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+         ++ +N +L +  ++K +  A +L  R+  KG  PD  T  I
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G++      L ++  +G+ P     + L++GL   G ++ A    +K++ QG
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F L+  ++ +LI  +CK G+    +++   +       +V  Y  +I A+ K  ++ EA+
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAY 219

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +   G       Y+ +I G    G+  +A    +EM +K   PN   Y +L+   
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + G+  EA + L  M +  + P    +  + DG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 7/235 (2%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A  VFN  +       V  Y  L+   C+ K+   A  L + M +K  VP   TY+ 
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++    + + EM D+G    V     L+ GL   G+L+ A  + NKM  QG
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQG 439

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  TF  L++ +CK G ++   E++  +   G   +V TY ++I    K G+++EA 
Sbjct: 440 IRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEAL 499

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ------FDDAFCFFSEMKIKGHPPN 261
            +L  + ++G  P    +  II  +F++ +      FD       E K KG  P+
Sbjct: 500 TMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVWEIVEHK-KGETPS 553



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 127/261 (48%), Gaps = 8/261 (3%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL---FALCEVKLF 68
           +++P   T +++++   K G V  A  V         +  V+ Y++L+   F + EVK  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK-- 321

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  +   M   G  PD  TY IL+N +C +  + EA    +EM  K   P +     L
Sbjct: 322 -KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL  +G +     ++++M  +G   ++ T++SLI+ +CK+G ++  + ++  +   G+
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGI 440

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +  T+ IL+  + K G + +A  +  +L+  G+      Y  +I G  ++G  ++A  
Sbjct: 441 RPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALT 500

Query: 249 FFSEMKIKGHPPNRPVYTMLI 269
             S+M+  G  P+   + ++I
Sbjct: 501 MLSKMEDNGCIPDAVTFEIII 521



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 100/194 (51%), Gaps = 2/194 (1%)

Query: 13  LSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V+P   T +++I  F K+ +VD A+ +F +    N    ++ Y+SL+  LC+      
Sbjct: 333 MGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPY 392

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            + LI  M  +G   +  TY+ L++  C +G +  A     +M D+G  P      +L+ 
Sbjct: 393 VWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLD 452

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+++   ++ +G+ L++ T+N +I+  CK G +E  + M   +   G   
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 191 DVSTYKILIPAVSK 204
           D  T++I+I A+ K
Sbjct: 513 DAVTFEIIIIALFK 526



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 119/257 (46%), Gaps = 2/257 (0%)

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +K +  A +L  R+  KG  PD  T  IL+N +C  G++      L ++  +G++P    
Sbjct: 939  MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTIT 998

Query: 125  RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
               L+ GL   G +  A    +K++ QGF L+  ++ +LI  +CK G+    +++   + 
Sbjct: 999  FTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID 1058

Query: 185  KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
                  DV  Y  +I A+ K  ++ +A+ L   +   G       Y  +I G    G+  
Sbjct: 1059 GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLK 1118

Query: 245  DAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFV-EAANYLVEMTEMGLTPISRCFDL 302
            +A    ++M +K   PN   Y +L+  +C  G   + E+ + L +M + G    +  F++
Sbjct: 1119 EAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEI 1178

Query: 303  VTDGLKNCGKHDLAEKI 319
            +   L    ++D  EK+
Sbjct: 1179 IISALFEKDENDKVEKL 1195



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 133/325 (40%), Gaps = 35/325 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I++ F K      AV + ++      Q  ++  N L+   C +      ++++ +++++G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 83  FVPDKRT-----------------------------------YAILVNAWCSSGKMREAQ 107
           + PD  T                                   Y  L+N  C  G  R A 
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAI 184

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           + LQ++  +   P V     ++  L     +  A  + ++M  +G   D+ T+++LI   
Sbjct: 185 KLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C  G+++  + +   +    +  +V TY IL+ A+ K G + EA  +L  +++   KP  
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ ++ G F   +   A   F+ M + G  P+   YT+LI    +     EA N   E
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGK 312
           M +  + P    +  + DGL   G+
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/260 (21%), Positives = 117/260 (45%), Gaps = 2/260 (0%)

Query: 36   AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
            AV + ++      Q  +   N L+   C +      ++++ +++++G+ PD  T+  L+N
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 96   AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
              C  G++ +A  F  ++  +GF         L+ G+   G   +A +++ K+  +    
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 156  DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            D+  +N++I+ +CK   V     +++ +   G+ ADV TY  LI      G + EA  LL
Sbjct: 1065 DVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLL 1124

Query: 216  HNLVEDGHKPFPSLYAPIIKGMFRRGQ--FDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
            + +V     P    Y  ++  + + G+   D++    S+M+  G   N   + ++I+   
Sbjct: 1125 NKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALF 1184

Query: 274  RGGRFVEAANYLVEMTEMGL 293
                  +    L EM   GL
Sbjct: 1185 EKDENDKVEKLLHEMIARGL 1204



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 101/206 (49%), Gaps = 2/206 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I      G V+ A+   +K  A   Q   + Y +L+  +C++     A  L+R++
Sbjct: 998  TFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKI 1057

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              +   PD   Y  +++A C    + +A     EM+ KG +  V   + L+ G    G L
Sbjct: 1058 DGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKL 1117

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE--VEFCVEMYYSVCKLGLCADVSTYK 196
            + A  ++NKM+ +    ++ T+N L++ +CK G+  ++  + M   +   G  A+  T++
Sbjct: 1118 KEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFE 1177

Query: 197  ILIPAVSKAGMIDEAFRLLHNLVEDG 222
            I+I A+ +    D+  +LLH ++  G
Sbjct: 1178 IIISALFEKDENDKVEKLLHEMIARG 1203



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 35/172 (20%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M       +  T S +I+   K+G +D A+ +FNK                  
Sbjct: 393 VWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNK------------------ 434

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M  +G  P+  T+ IL++  C  G++++AQE  Q++  KG++ 
Sbjct: 435 -----------------MKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHL 477

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            V   ++++ G    G LE A  M++KM   G + D  TF  +I  + K  E
Sbjct: 478 NVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDE 529


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 144/305 (47%), Gaps = 3/305 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS +TL   I    K G    A+++  K         V++YN ++ +LC+ K    AY L
Sbjct: 165 VSYRTL---INGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQL 221

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              MI K   PD  T+  L+  +C  G+++EA     EM  K  NP V    +LV  L  
Sbjct: 222 YSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCK 281

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +  AK M+  M+KQG + D+ T++SL++  C   EV     ++ ++ +LG+     +
Sbjct: 282 DGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHS 341

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y I+I  + K  M+DEA  L   +   G  P    Y  +I G+ + G+   A+    EM 
Sbjct: 342 YNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMH 401

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G P +   Y  LI +  +     +A   + ++ + G+ P    ++++ DGL   G+  
Sbjct: 402 NNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLK 461

Query: 315 LAEKI 319
            A+ +
Sbjct: 462 NAQDV 466



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 157/317 (49%), Gaps = 3/317 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I  F   G +  A  +F++    N    V  ++ L+ ALC+      A 
Sbjct: 230 ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAK 289

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M+++G +PD  TY+ L++ +C   ++ +A+     MS  G  P     ++++ GL
Sbjct: 290 NMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGL 349

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A  +  +M  +G   D  T+NSLI+ +CK G + +  ++   +   G+ AD+
Sbjct: 350 GKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADI 409

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + K   ID+A  L+  + + G +P    Y  +I G+ + G+  +A   F +
Sbjct: 410 LTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQD 469

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + IKG+  N   Y ++I    + G F EA   L +M   G+ P +  ++ +   L    +
Sbjct: 470 LLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDE 529

Query: 313 HDLAEKIELLEVSLRSV 329
           ++ AEK+ L E+ +R +
Sbjct: 530 NEKAEKL-LREMIIRGL 545



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 127/276 (46%), Gaps = 2/276 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH--GAYALIRRMIRKGFVPDKRTY 90
           V+N V  F++         ++ +N +L ++ +    H   A +L  ++  KG  P   T+
Sbjct: 38  VNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTF 97

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            ILVN +C  G+M  A     ++   G++P     + L+ G+   G L+ A    + +I 
Sbjct: 98  NILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIA 157

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF LD  ++ +LI  +CK GE    ++M   +    +  DV  Y I+I ++ K   + +
Sbjct: 158 LGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSD 217

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A++L   ++     P    +  +I G    GQ  +AF  F EM +K   P+   +++L+ 
Sbjct: 218 AYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVD 277

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              + G    A N L  M + G+ P    +  + DG
Sbjct: 278 ALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDG 313



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 136/317 (42%), Gaps = 4/317 (1%)

Query: 9   KPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K   L   P T++   +I     +G +  A+   +   A       + Y +L+  LC++ 
Sbjct: 119 KILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIG 178

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  +++++  K    D   Y I++N+ C    + +A +   EM  K  +P V   +
Sbjct: 179 ETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFN 238

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G    G L+ A  + ++M+ +    D+ TF+ L++ +CK G +     M   + K 
Sbjct: 239 SLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ 298

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  DV TY  L+        +++A  +   +   G  P    Y  +I G+ +    D+A
Sbjct: 299 GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEA 358

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F EM  KG  P+   Y  LI    + GR   A   + EM   G+      ++ + D 
Sbjct: 359 LSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV 418

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C  H + + I L++
Sbjct: 419 L--CKNHHIDKAIALVK 433



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 72/154 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M    +     T + +I+   K+  +D A+ +  K      Q  +  YN L+  
Sbjct: 394 WQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDG 453

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + ++ KG+  +  TY I++N  C  G   EA+  L +M + G  P 
Sbjct: 454 LCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPD 513

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               + +++ L      E A++++ +MI +G +L
Sbjct: 514 AVTYETIIRALFRKDENEKAEKLLREMIIRGLLL 547


>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g65820
 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 151/312 (48%), Gaps = 2/312 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   + P+   ++++ F    +V  A+EV ++   F  +    ++  LL
Sbjct: 166 VWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLL 225

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A  L   M R  F  + R +  L+  WC  GKM EA+  L +M++ GF 
Sbjct: 226 DALCKHGSVKDAAKLFEDM-RMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFE 284

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +     L+ G  NAG +  A  ++  M ++GF  +   +  LI+ +CK   +E  +++
Sbjct: 285 PDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKV 344

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + +    ADV TY  L+    K G ID+ + +L ++++ G  P    Y  I+    +
Sbjct: 345 FVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEK 404

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           +  F++      +M+   + P+  +Y ++I +  + G   EA     EM E GL+P    
Sbjct: 405 KESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDT 464

Query: 300 FDLVTDGLKNCG 311
           F ++ +GL + G
Sbjct: 465 FVIMINGLASQG 476



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 101/233 (43%), Gaps = 3/233 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ Y       T + ++  F K G +D    V +           L Y  ++ A  + + 
Sbjct: 348 MERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKES 407

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     L+ +M +  + PD   Y +++   C  G+++EA     EM + G +P V    +
Sbjct: 408 FEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVI 467

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGF--VLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ GL + G L  A     +M+ +G   V    T   L+ T+ K  ++E   +++  +  
Sbjct: 468 MINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITS 527

Query: 186 LGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            G C  +V ++ I I A+   G   EA      ++E    P P  +A ++KG+
Sbjct: 528 KGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGL 580



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 3/126 (2%)

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +L+   + A M+ +A  +L  + + G +P   ++  ++  + + G   DA   F +M+++
Sbjct: 188 VLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR 247

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P N   +T L+    R G+ +EA   LV+M E G  P    +  +  G  N GK  +A
Sbjct: 248 -FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGK--MA 304

Query: 317 EKIELL 322
           +  +LL
Sbjct: 305 DAYDLL 310


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 1/291 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I  +   G +D A  V ++   +  C   +  YN+L+  LC+      A  L+  M  K
Sbjct: 359 LINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIK 418

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  TY IL++ +C  G++ EA+  L EMS KG      G + L+  L     ++ A
Sbjct: 419 GCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDA 478

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             M   M  +G   D+ TFNSLI  +CK  + E  + +Y  +   G+ A+  TY  LI A
Sbjct: 479 LNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHA 538

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G + EA +L+++++  G       Y  +IK + R G  +     F +M  KG  PN
Sbjct: 539 FLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPN 598

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                +LI    R G    A  +L +M   GLTP    ++ + +GL   G+
Sbjct: 599 NISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 649



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G ++ A  V ++ +        + YN L+ ALC+ +    A  +   M
Sbjct: 426 TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 485

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+  L+   C   K  EA    Q+M  +G        + L+   L  G +
Sbjct: 486 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 545

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++VN M+ +G  LD  T+N LI+ +C++G +E  + ++  +   GL  +  +  IL
Sbjct: 546 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL 605

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G I  A   L +++  G  P    Y  +I G+ + G+  +A   F +++++G 
Sbjct: 606 INGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y  LI+   + G F +A   L    + G  P
Sbjct: 666 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 702



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
             ++ M    L+++    + +I    K   V +A+ +F   ++  C+  +  +NSL+F L
Sbjct: 445 NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 504

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V  F  A  L + M+ +G + +  TY  L++A+   G M+EA + + +M  +G     
Sbjct: 505 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 564

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++ L  AG +E    +   M+ +G   +  + N LI  +C++G ++  +E    
Sbjct: 565 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 624

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D+ TY  LI  + K G   EA  L   L  +G  P    Y  +I    + G 
Sbjct: 625 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGM 684

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           FDDA    S     G  PN   + +L++
Sbjct: 685 FDDAHLLLSRGVDSGFIPNEVTWYILVS 712



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 5/244 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +  ++ ALC V     A AL++ M R G VP+   Y  L++A    G++ E  + L+
Sbjct: 217 VYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLE 276

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P V   +  + GL     +  A ++V++M+ +GF  +  T+  L+  +C+ G
Sbjct: 277 EMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMG 336

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH-NLVEDGHKPFPSLY 230
           +V+    +   V       +V  +  LI      G +DEA  ++H +++  G  P    Y
Sbjct: 337 KVDEARMLLNKVPN----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTY 392

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G+ ++G    A    +EM+IKG  PN   YT+LI    + GR  EA N L EM+ 
Sbjct: 393 NTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSG 452

Query: 291 MGLT 294
            GL 
Sbjct: 453 KGLA 456



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 135/345 (39%), Gaps = 74/345 (21%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA--------- 61
           Y   V  + L L+ E       VD+A  +    T   C    ++Y +L+ A         
Sbjct: 218 YTFGVVMKALCLVNE-------VDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNE 270

Query: 62  --------------------------LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
                                     LC++   H A  L+ RM+ +GF P+  TY +L++
Sbjct: 271 VLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMH 330

Query: 96  AWCSSGKMREAQEFL--------------------------------QEMSDKGFNPPVR 123
             C  GK+ EA+  L                                + M   G  P + 
Sbjct: 331 GLCRMGKVDEARMLLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIF 390

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL   GYL SA++++N+M  +G   ++ T+  LI+  CK G +E    +   +
Sbjct: 391 TYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEM 450

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              GL  +   Y  LI A+ K   + +A  +  ++   G KP    +  +I G+ +  +F
Sbjct: 451 SGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKF 510

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           ++A   + +M ++G   N   Y  LI    R G   EA   + +M
Sbjct: 511 EEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 555



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 106/240 (44%), Gaps = 7/240 (2%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P  R+Y ++++   +    +       EM  KG +P V    ++++ L     ++SA  +
Sbjct: 180 PTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVNEVDSACAL 239

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M + G V +   + +LI  + K G V   +++   +  +G   DV+T+   I  + K
Sbjct: 240 LKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCK 299

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              I EA +L+  ++  G  P    Y  ++ G+ R G+ D+A    +++      PN  +
Sbjct: 300 MLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVP----NPNVVL 355

Query: 265 YTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +  LI      GR  EA   + E M  +G  P    ++ +  GL  C K  L    EL+ 
Sbjct: 356 FNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGL--CKKGYLVSARELMN 413



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 69/157 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   + G ++  + +F    +       +  N L+  LC       A   +R M
Sbjct: 566 TYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDM 625

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PD  TY  L+N  C +G+ +EA     ++  +G  P     + L+      G  
Sbjct: 626 IHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMF 685

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           + A  ++++ +  GF+ +  T+  L+    K G+ EF
Sbjct: 686 DDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQEF 722


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 135/260 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + + +   K+G +D A E+ ++ +    Q  V  YN+++  LC++        L+  M
Sbjct: 454 TYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM 513

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              GF PD  TY  L++A+C  G+M +A E L+ M +K   P +   ++L+ G   +G L
Sbjct: 514 DLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGML 573

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++  M+++G + +  TFNSL++  C    +    E+Y ++   G+  D +TY IL
Sbjct: 574 EDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNIL 633

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + EA+ L   +VE G+    + Y  +I+G ++R +F +A   F EM+  G 
Sbjct: 634 IKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGL 693

Query: 259 PPNRPVYTMLITMCGRGGRF 278
              + +Y + + +    G +
Sbjct: 694 VAEKDIYDIFVDVNYEEGNW 713



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 134/289 (46%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D  +++ ++      +    +YN+++  LC+      A  L+R M + G  PD   Y
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVY 350

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             +++ +C  G +  A +   EM  K   P +     ++ G+  +G +  A++M N+M+ 
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLV 410

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   D  T+ +LI+  CK+GE++    ++  + + GL  +V TY  L   + K G ID 
Sbjct: 411 KGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDV 470

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LLH +   G +P    Y  I+ G+ + G  +       EM + G  P+   YT L+ 
Sbjct: 471 ANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMD 530

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + G   +A   L  M    L P    F+++ +G    G  +  E++
Sbjct: 531 AYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERL 579



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +  A E+FN+      +   + Y +L+   C+      A+++  +M
Sbjct: 384 TYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQM 443

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++KG  P+  TY  L +  C +G++  A E L EMS KG  P V   + +V GL   G +
Sbjct: 444 VQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI 503

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   +++ +M   GF  D  T+ +L++  CK GE+    E+   +    L   + T+ +L
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL 563

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     +GM+++  RL+  ++E G  P  + +  ++K    +         +  M  +G 
Sbjct: 564 MNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGV 623

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +LI    +     EA     EM E G +  +  +D +  G     K   A K
Sbjct: 624 MPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARK 683

Query: 319 I 319
           +
Sbjct: 684 L 684



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 134/297 (45%), Gaps = 2/297 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I  F K G V  A ++F++         ++ Y S++  +C+      A  +   M+ 
Sbjct: 351 TTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLV 410

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  PD+ TY  L++ +C +G+M+EA     +M  KG  P V     L  GL   G ++ 
Sbjct: 411 KGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDV 470

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +++++M ++G   ++ T+N+++  +CK G +E  V++   +   G   D  TY  L+ 
Sbjct: 471 ANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMD 530

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A  K G + +A  LL  ++    +P    +  ++ G    G  +D       M  KG  P
Sbjct: 531 AYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMP 590

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           N   +  L+                  M + G+ P S  ++++  G  +C   ++ E
Sbjct: 591 NATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKG--HCKARNMKE 645



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 2/269 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y +++   C++     A  L   M RK  VPD  TY  +++  C SGKM EA+E   E
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  KG  P       L+ G   AG ++ A  + N+M+++G   ++ T+ +L + +CK+GE
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++   E+ + + + GL  +V TY  ++  + K G I++  +L+  +   G  P    Y  
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++    + G+   A      M  K   P    + +L+      G   +    +  M E G
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKG 587

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           + P +  F+ +    + C K+++    E+
Sbjct: 588 IMPNATTFNSLMK--QYCIKNNMRATTEI 614



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C +        L+  +  KG  PD+  Y  ++   C +G++ EA++ L+ M   G  P  
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++ G    G + +A ++ ++M ++  V D+ T+ S+I  ICKSG++    EM+  
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNE 407

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D  TY  LI    KAG + EAF + + +V+ G  P    Y  +  G+ + G+
Sbjct: 408 MLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A     EM  KG  PN   Y  ++    + G   +    + EM   G  P +  +  
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 303 VTDGLKNCGKHDLAEKIELLEVSL 326
           + D    C   ++A+  ELL + L
Sbjct: 528 LMDAY--CKMGEMAKAHELLRIML 549



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 137/288 (47%), Gaps = 2/288 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           AV+VF +          +  N +L  LC++     A+ L+ +M  +G  PD  +Y ++V+
Sbjct: 226 AVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVS 285

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C  G++ +  + + E+  KG  P     + ++  L   G +  A+Q++  M K G   
Sbjct: 286 GYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFP 345

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D   + ++I   CK G V    +++  + +  +  D+ TY  +I  + K+G + EA  + 
Sbjct: 346 DNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + ++  G +P    Y  +I G  + G+  +AF   ++M  KG  PN   YT L     + 
Sbjct: 406 NEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKN 465

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G    A   L EM+  GL P    ++ + +GL  C   ++ + ++L+E
Sbjct: 466 GEIDVANELLHEMSRKGLQPNVYTYNTIVNGL--CKIGNIEQTVKLME 511



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 115/242 (47%), Gaps = 10/242 (4%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEF--LQEM-----SDKGFNPPVRGRDLLVQGLLNAGYL 138
           D +T   LV  +C+  K+  ++ F    EM      D G +P V   DL  Q L+  G++
Sbjct: 130 DIQTAKRLVFEFCAKPKIDVSKSFHLFTEMLIYTYKDWGSHPLVF--DLYFQVLVENGFV 187

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETI-CKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+++ +K+++ G V+ +++ N  +  + C    ++  V+++    +LG+C +  +  I
Sbjct: 188 LEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELGVCWNTVSCNI 247

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + + G + EA  LL  + + G+ P    Y  ++ G  R G+ D       E+K KG
Sbjct: 248 VLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKG 307

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+  +Y  +I +  + G  VEA   L  M + G+ P +  +  V  G    G    A 
Sbjct: 308 LKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAAC 367

Query: 318 KI 319
           K+
Sbjct: 368 KL 369



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +NSL+   C          + + M  +G +PD  TY IL+   C +  M+EA    +EM 
Sbjct: 595 FNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMV 654

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KG++      D L++G         A+++  +M K G V + + ++  ++   + G  E
Sbjct: 655 EKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714

Query: 175 FCVEM 179
             +E+
Sbjct: 715 ITLEL 719


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 129/267 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C+    H    L+  M+ KG  P+  TY  L+N  C +G +  A E   +M 
Sbjct: 315 YNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMR 374

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G  P  R    L+ G    G +  A +++++MI  GF   + T+N+L+   C  G V+
Sbjct: 375 VRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQ 434

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V +   + + GL  DV +Y  +I    +   + +AF++   +VE G  P    Y+ +I
Sbjct: 435 EAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLI 494

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G+  + +  +AF  F EM  +G PP+   YT LI      G   +A     EM + G  
Sbjct: 495 QGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFL 554

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P +  + ++ +GL    +  +A+++ L
Sbjct: 555 PDNVTYSVLINGLNKKARTKVAKRLLL 581



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 144/315 (45%), Gaps = 4/315 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T ++II      G ++  +    K         V+ YN+L+ A C+ K    A 
Sbjct: 203 VSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAM 262

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL+R M   G   +  +Y  ++N  C  G+M E  E ++EM  KG  P     + LV G 
Sbjct: 263 ALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGF 322

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L     ++++M+ +G   ++ T+ +LI  +CK+G +   VE++  +   GL  + 
Sbjct: 323 CKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNE 382

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI    + G+++EA+++L  ++  G  P    Y  ++ G    G+  +A      
Sbjct: 383 RTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRG 442

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G PP+   Y+ +I    R     +A     EM E G+ P +  +  +  GL  C +
Sbjct: 443 MVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL--CLQ 500

Query: 313 HDLAEKIELLEVSLR 327
             L E  +L    +R
Sbjct: 501 QKLVEAFDLFREMMR 515



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 2/314 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +    +L+      H   D+A  VF           V  YN ++  +       
Sbjct: 165 PTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLE 224

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
                +R+M ++G  P+  TY  L++A C   K++EA   L+ M+  G    +   + ++
Sbjct: 225 KGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVI 284

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G +    ++V +M  +G V D  T+N+L+   CK G +   + +   +   GL 
Sbjct: 285 NGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLS 344

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY  LI  + KAG +  A  +   +   G +P    Y  +I G  ++G  ++A+  
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            SEM + G  P+   Y  L+      GR  EA   L  M E GL P    +  V  G   
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGF-- 462

Query: 310 CGKHDLAEKIELLE 323
           C + +L +  ++ E
Sbjct: 463 CRERELGKAFQMKE 476



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 17/336 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + +T + +I+ F + GL++ A +V ++         V+ YN+L+   C +  
Sbjct: 373 MRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGR 432

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++R M+ +G  PD  +Y+ ++  +C   ++ +A +  +EM +KG  P       
Sbjct: 433 VQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSS 492

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+QGL     L  A  +  +M+++G   D  T+ SLI   C  GE+   + ++  + + G
Sbjct: 493 LIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRG 552

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII------------- 234
              D  TY +LI  ++K      A RLL  L  +   P    Y  +I             
Sbjct: 553 FLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEG 612

Query: 235 --KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             KG   +G  ++A   F  M  + H PN  +Y ++I    RGG   +A N  +E+    
Sbjct: 613 LVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSS 672

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               +     +   L   G +D  E   LL+  LRS
Sbjct: 673 FACHTVAVIALVKALAREGMND--ELSRLLQNILRS 706



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 128/284 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L     T + ++  F K G +   + + ++         V+ Y +L+  +C+
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  +M  +G  P++RTY  L++ +C  G M EA + L EM   GF+P V  
Sbjct: 360 AGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVT 419

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV G    G ++ A  ++  M+++G   D+ +++++I   C+  E+    +M   + 
Sbjct: 420 YNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMV 479

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D  TY  LI  +     + EAF L   ++  G  P    Y  +I      G+  
Sbjct: 480 EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELS 539

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            A     EM  +G  P+   Y++LI    +  R   A   L+++
Sbjct: 540 KALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKL 583



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 113/268 (42%), Gaps = 15/268 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K +  M     S S  T + ++  +   G V  AV +            V+ Y++++  
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAG 461

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C  +    A+ +   M+ KG +PD  TY+ L+   C   K+ EA +  +EM  +G  P 
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPD 521

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+      G L  A ++ ++M+++GF+ D  T++ LI  + K    +    +  
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLL 581

Query: 182 SVCKLGLCADVSTYKILIPAVSK---------------AGMIDEAFRLLHNLVEDGHKPF 226
            +       D  TY  LI   S                 G+++EA R+   +++  HKP 
Sbjct: 582 KLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPN 641

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            ++Y  +I G  R G    A+  + E++
Sbjct: 642 AAIYNLMIHGHSRGGNVHKAYNLYMELE 669



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 93/203 (45%), Gaps = 9/203 (4%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-----EVEFCVEMY 180
           DL+V+ L   G++  A  +++   + GF   + ++N++++ + +       + +    ++
Sbjct: 136 DLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVF 195

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+  +V TY ++I  V   G +++    +  + ++G  P    Y  +I    ++
Sbjct: 196 RDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKK 255

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            +  +A      M + G   N   Y  +I  +CG+ GR  E    + EM   GL P    
Sbjct: 256 KKVKEAMALLRAMAVGGVAANLISYNSVINGLCGK-GRMSEVGELVEEMRGKGLVPDEVT 314

Query: 300 FDLVTDGLKNCGKHDLAEKIELL 322
           ++ + +G   C + +L + + LL
Sbjct: 315 YNTLVNGF--CKEGNLHQGLVLL 335



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 56/224 (25%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA------------------ 96
           Y SL+ A C       A  L   M+++GF+PD  TY++L+N                   
Sbjct: 525 YTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLF 584

Query: 97  --------------------------------WCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                                           +C  G M EA    + M  +   P    
Sbjct: 585 YEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAI 644

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG---EVEFCVEMYY 181
            +L++ G    G +  A  +  ++    F        +L++ + + G   E+   ++   
Sbjct: 645 YNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQNIL 704

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C+L    D    K+L+    K G +D    +L  + +DG  P
Sbjct: 705 RSCRLN---DAKVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLP 745


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 153/342 (44%), Gaps = 34/342 (9%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++ +   K G +D A E+  + +   C   ++ YN+L+  LC+      AY L+  +
Sbjct: 117 TYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETL 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GFVPD  TY I+V+  C  G++ +A + ++ M  +G  P V     L++GL   G +
Sbjct: 177 VSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 236

Query: 139 ESAKQMVNKMIKQGFVLD--------------------------------LETFNSLIET 166
           + A  +  +M+ +    D                                ++ +N+L++ 
Sbjct: 237 DEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDG 296

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK G ++    ++  +   G   ++ TY I++  + K G +DEAF  L ++   G  P 
Sbjct: 297 YCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPD 356

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  II G+F+  +  +A     +M   G PP+   Y  L+    +  RF +A   L 
Sbjct: 357 VVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILK 416

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            M + G+ P +  ++ +  GL    +  L +  EL+   LR+
Sbjct: 417 NMIKAGVDPDNVTYNTLISGLSQTNR--LGDAYELMHEMLRN 456



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 149/337 (44%), Gaps = 36/337 (10%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T +++I+   K    D A E+ ++          + +NS++  LC+   F  A+
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L+  M  +   P   TY  L++  C    +  A+  + E    GF P V    +L  GL
Sbjct: 66  SLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGL 125

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A ++V +M   G   +L T+N+LI+ +CK+ + E   E+  ++   G   DV
Sbjct: 126 CKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDV 185

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY I++  + K G +D+A +++  +++ G  P    Y  +++G+ R G+ D+A   F E
Sbjct: 186 VTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKE 245

Query: 253 M---------------------------------KIKGHPPNRPVYTMLITMCGRGGRFV 279
           M                                  I+G  P   VY  L+    + GR  
Sbjct: 246 MVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG-TPYIDVYNALMDGYCKEGRLD 304

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           E  N   +M   G  P  + +++V DGL   GK D A
Sbjct: 305 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEA 341



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 124/268 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L+  LC+      A  ++  M+ +G  PD  T+  +++  C +GK   A   L 
Sbjct: 10  VFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLA 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+++   P     + L+ GL     ++ AK +V++ +  GFV D+ T++ L + +CK G
Sbjct: 70  VMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++   E+   +   G   ++ TY  LI  + KA   ++A+ LL  LV  G  P    Y 
Sbjct: 130 RIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYT 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I+ G+ + G+ D A      M  +G  P+   YT L+    R GR  EA +   EM   
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 249

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             T  +  +  + +G     +   A+K+
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKV 277



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 40/342 (11%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P T++   I++   K G  + A  +       NC+     YN+L+  LC+ +    A 
Sbjct: 41  VTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAK 100

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS------------------ 114
            L+   +  GFVPD  TY+IL +  C  G++ EA E ++EMS                  
Sbjct: 101 TLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGL 160

Query: 115 -----------------DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                              GF P V    ++V GL   G L+ A +MV  M+K+G    +
Sbjct: 161 CKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSV 220

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+ +L+E +C++G V+    ++  +      AD   Y  L+    K+    EA +++  
Sbjct: 221 ITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDG 280

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +      P+  +Y  ++ G  + G+ D+    F +M  +G  PN   Y +++    + G+
Sbjct: 281 I---RGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK 337

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             EA  +L  M   G  P    ++++ DGL    K   A ++
Sbjct: 338 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQV 379



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 110/242 (45%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +   PD  TY IL++  C + K  +A E L EM D+G  P     + ++ GL  AG 
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A  ++  M ++       T+N+LI  +CK   V+    +       G   DV TY I
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L   + K G IDEAF L+  +  +G  P    Y  +I G+ +  + + A+     +   G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT+++    + GR  +A   +  M + G TP    +  + +GL   G+ D A 
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 318 KI 319
            I
Sbjct: 241 HI 242



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 137/319 (42%), Gaps = 33/319 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M     + S  T + ++E   + G VD A  +F +  + +C    L Y SL+   
Sbjct: 206 KMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGY 265

Query: 63  CEVKLFHGAYALI--------------------------------RRMIRKGFVPDKRTY 90
           C+      A  ++                                  M  +G VP+ +TY
Sbjct: 266 CKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTY 325

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++  C  GK+ EA  FL+ M   G  P V   ++++ GL  A   + A+Q++++MI+
Sbjct: 326 NIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQ 385

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+N+L+   CK    +  V +  ++ K G+  D  TY  LI  +S+   + +
Sbjct: 386 AGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGD 445

Query: 211 AFRLLHNLVEDGHKPFP-SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           A+ L+H ++ +G      + Y  II  + + G    A      M   G   N   Y + I
Sbjct: 446 AYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFI 505

Query: 270 TMCGRGGRFVEAANYLVEM 288
               + GR  EA++ L EM
Sbjct: 506 DRLCKEGRLDEASSLLSEM 524



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 3/274 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++I++   K G +D A+++        C   V+ Y +L+  LC       A+ + + M
Sbjct: 187 TYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K    D   Y  LVN +C S + +EAQ+ +  +  +G  P +   + L+ G    G L
Sbjct: 247 VSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGI--RG-TPYIDVYNALMDGYCKEGRL 303

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    +   M  +G V +++T+N +++ +CK G+V+       S+   G   DV +Y I+
Sbjct: 304 DEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNII 363

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA    EA ++L  +++ G  P    Y  ++    +  +FDDA      M   G 
Sbjct: 364 IDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 423

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P+   Y  LI+   +  R  +A   + EM   G
Sbjct: 424 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG 457



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 139/301 (46%), Gaps = 5/301 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++++   KHG VD A        +  C   V+ YN ++  L +      A  ++ +
Sbjct: 323 KTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQ 382

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI+ G  PD  TY  L+  +C   +  +A   L+ M   G +P     + L+ GL     
Sbjct: 383 MIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNR 442

Query: 138 LESAKQMVNKMIKQGFVLDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           L  A +++++M++ G V+    T+N++I+ +CK G ++  + +   +   G+ A+  TY 
Sbjct: 443 LGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYN 502

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KI 255
           I I  + K G +DEA  LL  +  D  +   S Y  +I G+ +  Q D A     EM  +
Sbjct: 503 IFIDRLCKEGRLDEASSLLSEM--DTLRDEVS-YTTVIIGLCKAEQLDRASKLAREMVAV 559

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG       + +LI    +  R  EA   L  M + G +P    +++V   L    K D 
Sbjct: 560 KGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDK 619

Query: 316 A 316
           A
Sbjct: 620 A 620



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 7/273 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++ +F K    D+AV +             + YN+L+  L +      AY L+  M
Sbjct: 394 TYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 453

Query: 79  IRKGFVPDK-RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +R G V     TY  +++  C  G +++A   +  M+  G        ++ +  L   G 
Sbjct: 454 LRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGR 513

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYK 196
           L+ A  ++++M     + D  ++ ++I  +CK+ +++   ++   +  + GLC    T+ 
Sbjct: 514 LDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFN 570

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +LI A +K   +DEA  LL  +V+ G  P    Y  +I  + +  + D A+  F EM ++
Sbjct: 571 LLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 630

Query: 257 GHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEM 288
           G   +   YT+LI  +CG+ GR  EA   L EM
Sbjct: 631 GIVASSVSYTVLIYGLCGQ-GRGKEALQVLEEM 662



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 2/154 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++    L ++  T +L+I+ F K   +D A+ +        C   V+ YN ++  LC++
Sbjct: 555 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKL 614

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-PPVRG 124
                A+ L   M  +G V    +Y +L+   C  G+ +EA + L+EM+        ++ 
Sbjct: 615 DKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKC 674

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
           R L +  L   G  E A +++ +M  +   L L+
Sbjct: 675 RKLYL-ALRGQGRGEEAAELLRRMTTKMDSLSLD 707


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 134/272 (49%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
             N +  V+ Y+ ++ ALC+ +    A  L   M  +G  P   +Y  L++ +C  GK  
Sbjct: 235 GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWE 294

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA+    EM ++G  P V   ++L+  L   G +  AK ++  MI++G V +L T+NSLI
Sbjct: 295 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 354

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           E  C  G++    E++ S+   G   DV  Y +LI    K   ++EA +L + +++ G +
Sbjct: 355 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR 414

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  ++ G+F+ G+  DA   F  MK+ G P +  +Y + +    + G   EA   
Sbjct: 415 PDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMEL 474

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++    +     CF+ + DGL   GK + A
Sbjct: 475 FNKLKSYNIKLDIECFNCLIDGLCKAGKLETA 506



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 150/322 (46%), Gaps = 2/322 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   ++ +  + + +I  F   G  + A  +FN+      Q  V+ +N L+  LC+ 
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L+  MI++G VP+  TY  L+  +C  G +  A+E    M  KG  P V   
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ G      +E A ++ N M++ G   D++T+ +L+  + + G+V    +++  +  
Sbjct: 386 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 445

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D+  Y I +  + K G + EA  L + L     K     +  +I G+ + G+ + 
Sbjct: 446 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 505

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A+  F ++  +   P+   Y ++I    RGG+ V+A     +M + G TP    +  +  
Sbjct: 506 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565

Query: 306 GLKNCGKHDLAEKIELLEVSLR 327
           G     K  L + +ELL + ++
Sbjct: 566 GFFESKK--LEKVVELLHMMVQ 585



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 6/274 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ Y +L+  LC       A  L  RM + G  P+  TY  L+   C +G +  A +  Q
Sbjct: 166 IVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQ 225

Query: 112 EMSDKG------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           EM +        F P V    +++  L      + A+ +  +M  QG    + ++ SLI 
Sbjct: 226 EMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIH 285

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C  G+ E    ++  +   G+  +V T+ +LI  + K G + EA  LL  +++ G  P
Sbjct: 286 GFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVP 345

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I+G    G  + A   F  M  KG  P+   YT+LI    +  +  EA    
Sbjct: 346 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             M ++G  P  + +  +  GL   GK   A+K+
Sbjct: 406 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 439



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 9/280 (3%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +  LL  L ++K +   + L  +M   G  PD  T  IL+N  C+  ++ E    +  + 
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G+ P +     L++GL     +  A  +  +M K G   +  T+ +L++ +C++G + 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 175 FCVEMYY------SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             ++++       S+  +     V +Y I+I A+ K    DEA  L   +   G  P   
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G    G++++A   F+EM  +G  PN   + +LI +  + G+ +EA + L  M
Sbjct: 279 SYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVM 338

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            + G+ P    ++ + +G   C   DL    EL  VS+ S
Sbjct: 339 IQRGIVPNLLTYNSLIEGF--CLVGDLNSARELF-VSMPS 375



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 132/304 (43%), Gaps = 12/304 (3%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           H  ++ + + FN   +F  Q  + L+N     +   +    A+     M+     P   +
Sbjct: 43  HKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITATQ----AFQFFHLMMYSNPTPPLSS 98

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +  L++         +      +M   G +P     ++L+  L N   +     ++  ++
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++G++ D+ T+ +LI+ +C    +     ++  + KLG   +  TY  L+  + + G I 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 210 EAFRLLHNLVEDGH------KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            A +L   ++ D        KP    Y+ II  + +  + D+A   F EMK++G  P   
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            YT LI     GG++ EA     EM   G+ P    F+++ D L  C +  + E  +LLE
Sbjct: 279 SYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVL--CKEGKVIEAKDLLE 336

Query: 324 VSLR 327
           V ++
Sbjct: 337 VMIQ 340



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   +MK Y +        + +    K+G +  A+E+FNK  ++N +  +  +N L+  L
Sbjct: 438 KLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGL 497

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A+ L  ++ ++   PD  TY I+++ +C  G++ +A    Q+M   G  P  
Sbjct: 498 CKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDK 557

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                L++G   +  LE   ++++ M+++   LD+ 
Sbjct: 558 ITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVN 593



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 6/200 (3%)

Query: 3   KTIELMKPYN--LSVSP----QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K  E MK YN  L V      +T   ++    + G V +A ++F     +     + +Y 
Sbjct: 397 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 456

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             L  LC+      A  L  ++       D   +  L++  C +GK+  A E  +++  +
Sbjct: 457 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE 516

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
              P V   ++++      G +  A  +  KM K G   D  T+ +LI    +S ++E  
Sbjct: 517 ELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKV 576

Query: 177 VEMYYSVCKLGLCADVSTYK 196
           VE+ + + +  +  DV+  +
Sbjct: 577 VELLHMMVQRDVSLDVNILR 596


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 151/319 (47%), Gaps = 20/319 (6%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  LV++A E++++         V+  NSL++  C V  F  A+ L+R M+ 
Sbjct: 215 STIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVL 274

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   PD  T+ ILV+A C  GK++EA+  +  M  +G  P V     L+ G      +  
Sbjct: 275 KNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNK 334

Query: 141 AKQMVN---------KMIKQGFVL-----------DLETFNSLIETICKSGEVEFCVEMY 180
           AK + +         KM+ +   L           D  T+NSLI+ +CKSG + +  E+ 
Sbjct: 335 AKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELV 394

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G  AD+ TY  LI A+ K   +D+A  L+  + + G +     Y  +I G+ ++
Sbjct: 395 DEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQ 454

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   F ++ IKG+      YT++I      G   EA   L +M + G  P +   
Sbjct: 455 GRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTC 514

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + +   L    K++ AEK+
Sbjct: 515 ETIIRALFENDKNERAEKL 533



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 125/274 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+ V  F++    N    V+ +  +L +L ++K +    +L  ++   G  P+  + +I
Sbjct: 52  VDDLVSSFHRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSI 111

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G+MR A     ++   G++P       LV+G      ++ A    + ++  G
Sbjct: 112 LINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALG 171

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  +  ++ +LI  +CK GE    ++M   +    +  DV  Y  +I  + K  ++++A+
Sbjct: 172 FHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   ++     P       +I G    GQF +AF    EM +K   P+   + +L+   
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDAL 291

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + G+  EA + +  M + G+ P    +  + DG
Sbjct: 292 CKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDG 325



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 100/204 (49%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y+ ++   C++K+   A +L   M  +   PD  TY  L++  C SG++  A E + EM
Sbjct: 338 VYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEM 397

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            D G    +   + L+  L    +++ A  +V K+  QG  LD+ T+N LI+ +CK G +
Sbjct: 398 RDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRL 457

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +    ++  +   G    V TY I+I  +   G+++EA  LL  + ++G  P       I
Sbjct: 458 KDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETI 517

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKG 257
           I+ +F   + + A     EM  +G
Sbjct: 518 IRALFENDKNERAEKLLREMIARG 541



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 135/321 (42%), Gaps = 20/321 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +++ F  +  V  A+   +   A       + Y +L+  LC++     A  ++R++
Sbjct: 143 TLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQI 202

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K    D   Y+ +++  C    + +A E   EM  K  +P V   + L+ G    G  
Sbjct: 203 EGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQF 262

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST---- 194
           + A  ++ +M+ +    D+ TFN L++ +CK G+++        + K G+  DV T    
Sbjct: 263 KEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSL 322

Query: 195 ----------------YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
                           Y I+I    K  M+D+A  L + +      P    Y  +I G+ 
Sbjct: 323 MDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLC 382

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           + G+   A+    EM+  G P +   Y  LI    +     +A   + ++ + G+     
Sbjct: 383 KSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMY 442

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            ++++ DGL   G+   A+ I
Sbjct: 443 TYNILIDGLCKQGRLKDAQVI 463



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 71/153 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M+         T + +I+   K+  VD A+ +  K      Q  +  YN L+  
Sbjct: 391 WELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDG 450

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + ++ KG+     TY I++N  C  G + EA+  L +M D G  P 
Sbjct: 451 LCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPD 510

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
               + +++ L      E A++++ +MI +G +
Sbjct: 511 AVTCETIIRALFENDKNERAEKLLREMIARGLL 543


>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 489

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 135/278 (48%), Gaps = 11/278 (3%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L    C  K    A  L+R+M   G  P K TY I++  +  +G+++ A  F  
Sbjct: 197 VVTYNTLADGWCRAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFL 256

Query: 112 EMSDKGFN-----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +M  +G       P +     ++ GL  AG L+ A+++ ++M K+G    + T+N+LI+ 
Sbjct: 257 QMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQV 316

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           ICK G VE  V ++  + +     +V TY +LI  +   G ID A +L+  +  +G +P 
Sbjct: 317 ICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPV 376

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLIT---MCGRGGRFVEA 281
              Y  +I+  F  G+ + A C F  M  KG    PN+  Y ++I+   +  R      A
Sbjct: 377 VQTYNVLIRYSFEEGEIEKALCLFERMS-KGEDCLPNQDTYNIIISAMFVRKRAEDMATA 435

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A  ++EM E G  P     + V +GL   G   ++  +
Sbjct: 436 ARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDL 473



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 108/232 (46%), Gaps = 9/232 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF-----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           T ++I++ F + G + +A   F           +C+  ++ Y +++  L        A  
Sbjct: 234 TYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYTTIIHGLGVAGQLDKARK 293

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   M ++G  P   TY  L+   C  G + +A     +M  K + P V    +L++GL 
Sbjct: 294 LFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLC 353

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADV 192
           + G ++ A +++ +M  +G    ++T+N LI    + GE+E  + ++  + K   C  + 
Sbjct: 354 HVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMSKGEDCLPNQ 413

Query: 193 STYKILIPAV---SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            TY I+I A+    +A  +  A R++  +VE G+ P   +   ++ G+   G
Sbjct: 414 DTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLTG 465



 Score = 46.2 bits (108), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G V++AV VF+     +    V+ Y  L+  LC V     A  L+ RM
Sbjct: 309 TYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERM 368

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN--PPVRGRDLLVQGLL--- 133
             +G  P  +TY +L+      G++ +A    + MS KG +  P     ++++  +    
Sbjct: 369 KGEGCEPVVQTYNVLIRYSFEEGEIEKALCLFERMS-KGEDCLPNQDTYNIIISAMFVRK 427

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
            A  + +A +MV +M+++G++      N ++  +  +G  +   ++
Sbjct: 428 RAEDMATAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQISRDL 473


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 146/287 (50%), Gaps = 6/287 (2%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + +I      G V +A+ + +      CQ  V+ Y  LL A+C    F 
Sbjct: 136 SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFE 195

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A A++  M  KG  P+  TY +++N  C  G++ +A+E L  +   GF P       L+
Sbjct: 196 QAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLL 255

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL  +   +  +++  +M+++  + +  TF+ LI   C+ G VE  +++   + + G  
Sbjct: 256 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCA 315

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            + +   I+I ++ K G +D+AF+LL+++   G  P    Y  ++KG+ R  ++DDA   
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 250 FSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLT 294
            +EM     PPN   + T +  +C +G   +E A  L+E M+E G T
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKG--LIEQAIMLIEQMSEHGCT 420



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 130/265 (49%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A+ +  + +   C   V+ YN+L+   C       A  L R M  K   P+  
Sbjct: 400 QKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTI 456

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C++ ++  A E + EM      P V   ++LV      G+LE A ++V +M
Sbjct: 457 TYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQM 516

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L T+N+L++ I K    E  +E+ + +   G+  DV T+  +I  +SK   I
Sbjct: 517 MEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRI 576

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA +L H + + G +P   +Y  I+ G+ +R + D+A  FF+ M   G  PN   Y +L
Sbjct: 577 EEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIIL 636

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I      G   EA + L  +   G+
Sbjct: 637 IEGLAHEGLLKEAQDLLSVLCSRGV 661



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 121/247 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+  LC+      A +L+  M+R+G  P+  TY +L+ A C +    +A   L EM 
Sbjct: 146 YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMR 205

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +   ++++ G+   G ++ A++++N++   GF  D  ++ +L++ +C S   +
Sbjct: 206 AKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWD 265

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  + +     +  T+ +LI    + GM++ A ++L  + E G     +L   +I
Sbjct: 266 DVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVI 325

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + ++G+ DDAF   ++M   G  P+   YT ++    R  R+ +A   L EM      
Sbjct: 326 NSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCP 385

Query: 295 PISRCFD 301
           P    F+
Sbjct: 386 PNEVTFN 392



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 158/355 (44%), Gaps = 36/355 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  +  + +    +++I    K G VD+A ++ N   ++ C    + Y ++L  L
Sbjct: 304 QVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGL 363

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C  + +  A  L+  M+R    P++ T+   +   C  G + +A   +++MS+ G     
Sbjct: 364 CRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGV 423

Query: 118 --FNPPVRG--------------RDL-----------LVQGLLNAGYLESAKQMVNKMIK 150
             +N  V G              R +           L+ GL NA  L+ A ++V +M++
Sbjct: 424 VTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLR 483

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                ++ TFN L+   C+ G +E  +E+   + + G   ++ TY  L+  ++K    ++
Sbjct: 484 GDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSED 543

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLI 269
           A  LLH LV  G  P    ++ II  + +  + ++A   F  ++  G  P   VY  +L+
Sbjct: 544 ALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILL 603

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            +C R      A ++   M   G  P    + ++ +GL + G   L E  +LL V
Sbjct: 604 GLCKR-CEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGL--LKEAQDLLSV 655



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 137/340 (40%), Gaps = 40/340 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++E   ++   + A+ V ++  A  C   ++ YN ++  +C       A  L+ R+
Sbjct: 180 TYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRL 239

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              GF PD  +Y  L+   C+S +  + +E   EM +K   P     D+L++     G +
Sbjct: 240 PSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 299

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A Q++ +M + G   +    N +I +ICK G V+   ++   +   G   D  +Y  +
Sbjct: 300 ERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTV 359

Query: 199 IPAVSKA-----------------------------------GMIDEAFRLLHNLVEDGH 223
           +  + +A                                   G+I++A  L+  + E G 
Sbjct: 360 LKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGC 419

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  ++ G   +G  D A   F  M  K   PN   YT L+T      R   AA 
Sbjct: 420 TVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAE 476

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + EM      P    F+++      C K  L E IEL+E
Sbjct: 477 LVAEMLRGDCPPNVVTFNVLVSFF--CQKGFLEEAIELVE 514



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L   L+  LC       A  ++R     G   D   Y  LV  +C  G +  A+  + 
Sbjct: 76  VYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIG 135

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P       L++ L + G +  A  +++ M+++G   ++ T+  L+E +C++ 
Sbjct: 136 SMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNS 192

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E  + +   +   G   ++ TY ++I  + + G +D+A  LL+ L   G +P    Y 
Sbjct: 193 GFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYT 252

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG+    ++DD    F+EM  K   PN   + MLI    RGG    A   L +MTE 
Sbjct: 253 TLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEH 312

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G    +   ++V + +   G+ D A K+
Sbjct: 313 GCATNTTLCNIVINSICKQGRVDDAFKL 340



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 84/204 (41%), Gaps = 35/204 (17%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F + G ++ A+E+  +     C   ++ YN+LL  + +      A  L+  +
Sbjct: 492 TFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL 551

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  T++ ++       ++ EA +    + D G  P                  
Sbjct: 552 VSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP------------------ 593

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              K +V              +N ++  +CK  E++  ++ +  +   G   + STY IL
Sbjct: 594 ---KAVV--------------YNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIIL 636

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDG 222
           I  ++  G++ EA  LL  L   G
Sbjct: 637 IEGLAHEGLLKEAQDLLSVLCSRG 660


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 37/338 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G  DNA+ V +      C   V+ Y  LL A C+   +  A  L+  M
Sbjct: 154 TYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P     +++++GL  A   
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC--------- 189
           E A++++ +M ++G   ++ TFN LI  +C+ G VE  +E+   + K G           
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 190 --------------------------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                                      D+ +Y  L+ A+ + G +D A  LLH L + G 
Sbjct: 334 LHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 393

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I G+ + G+ ++A    +EM  KG  P+   Y+ + +   R GR  EA  
Sbjct: 394 TPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIK 453

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              ++ +MG+ P +  ++ +  GL  C +      I+L
Sbjct: 454 AFCKVQDMGIRPNTVLYNAILLGL--CKRRATHSAIDL 489



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 140/290 (48%), Gaps = 2/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    + G VD+A+E      ++ C+   + YN +L  LC  + +  A  L+  M
Sbjct: 224 TYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 283

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  T+ +L++  C  G +  A E L ++   G  P     + ++        +
Sbjct: 284 SRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKM 343

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   V  M+  G   D+ ++N+L+  +C+ GEV+  VE+ + +   G    + +Y  +
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++KAG  +EA  LL+ +V  G +P    Y+ I  G+ R G+ ++A   F +++  G 
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN  +Y  +L+ +C R      A +    M   G  P    + ++ +GL
Sbjct: 464 RPNTVLYNAILLGLCKRRATH-SAIDLFTYMVSNGCMPNESTYTILIEGL 512



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 120/239 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+E+ ++   + C    L YN +L A C+ K    A A +  M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  +Y  L+ A C  G++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++N+M+ +G   D+ T++++   +C+ G +E  ++ +  V  +G+  +   Y  +
Sbjct: 414 EEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAI 473

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  + K      A  L   +V +G  P  S Y  +I+G+   G   +A    +E+  +G
Sbjct: 474 LLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRG 532



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  +Y  +V  +C +G++  A+  +  M      P     + L++GL   G  ++A  +
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAV 174

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           ++ M+++G V D+ T+  L+E  CK    +  V++   +   G   D+ TY +++  + +
Sbjct: 175 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQ 234

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +D+A   L +L   G +P    Y  ++KG+    +++DA    +EM  KG PPN   
Sbjct: 235 EGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVT 294

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           + MLI+   R G    A   L ++ + G TP S  ++ +
Sbjct: 295 FNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 133/311 (42%), Gaps = 40/311 (12%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C+  V+ YN+++   C       A  L+  M  +   PD  TY  L+   C  G+   A
Sbjct: 115 SCEPDVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRGRTDNA 171

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
              L +M  +G  P V    +L++        + A +++++M  +G   D+ T+N ++  
Sbjct: 172 LAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNG 231

Query: 167 ICKSGEVEFCVE--------------MYYSVCKLGLCA---------------------D 191
           IC+ G V+  +E              + Y++   GLC                      +
Sbjct: 232 ICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPN 291

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V T+ +LI  + + G+++ A  +L  + + G  P    Y PI+    ++ + D A  F  
Sbjct: 292 VVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVE 351

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M   G  P+   Y  L+T   RGG    A   L ++ + G TP+   ++ V DGL   G
Sbjct: 352 LMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAG 411

Query: 312 KHDLAEKIELL 322
           K +  E +ELL
Sbjct: 412 KTE--EALELL 420



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 5/213 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     I+  F K   +D A+       +  C   ++ YN+LL ALC      
Sbjct: 325 PNSLSYNP-----ILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVD 379

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   +Y  +++    +GK  EA E L EM  KG  P +     + 
Sbjct: 380 AAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTIS 439

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G +E A +   K+   G   +   +N+++  +CK       ++++  +   G  
Sbjct: 440 SGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCM 499

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            + STY ILI  ++  G++ EA  ++  L   G
Sbjct: 500 PNESTYTILIEGLAYEGLVKEAREMMAELCSRG 532



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G VD AVE+ ++     C   ++ YN+++  L +      A  L+  M+ KG  PD  
Sbjct: 374 RGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDII 433

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+ + +  C  G++ EA +   ++ D G  P     + ++ GL       SA  +   M
Sbjct: 434 TYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYM 493

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +  G + +  T+  LIE +   G V+   EM   +C  G+
Sbjct: 494 VSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGV 533


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 139/293 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ MK         T +++I  F   G +D A+ V ++    NC+  V+ Y  L+ A 
Sbjct: 167 KVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEAT 226

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   A  L+  M+ +G  PD+ TY ++VN  C  G +  A EFL  +S  G    V
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGV 286

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++ LLN G  E  +++++ M+ +G   +  T+++LI  +C+ G+++    +   
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKV 346

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  L  D  +Y  LI A+ + G +D A   L +++  GH P    Y  I+  + + G 
Sbjct: 347 MKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGN 406

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            D+A   F ++   G PPN   Y  L       G  + A   ++EM   G+ P
Sbjct: 407 ADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDP 459



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 128/268 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+++   C+      A  ++ RM ++GF PD  TY IL+  +C  G++  A   + 
Sbjct: 146 VFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMD 205

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++      P V    +L++  +  G ++ A +++++M+ +G   D  T+N ++  +CK G
Sbjct: 206 QLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEG 265

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++   E    + K G  A VSTY IL+  +   G  +   +L+ +++  G +P P  Y+
Sbjct: 266 MLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYS 325

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + R G+ D+A      MK K   P+   Y  LI+   R G+   A  +L +M   
Sbjct: 326 TLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISG 385

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    ++ +   L   G  D A  I
Sbjct: 386 GHLPDILSYNSILASLCKNGNADEALNI 413



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 2/311 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           K I++M+       P   +   +I  F K   VD+A +V ++      +  V+ YN L+ 
Sbjct: 130 KAIQVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIG 189

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C       A  ++ ++++    P   TY IL+ A  + G + EA + L EM  +G  P
Sbjct: 190 NFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRP 249

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                +++V G+   G L+ A + ++++ K G V  + T+N L+  +   G+ E+  ++ 
Sbjct: 250 DRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLM 309

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   +  TY  LI A+ + G IDEA  +L  + E    P    Y P+I  + R 
Sbjct: 310 SDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCRE 369

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A  F  +M   GH P+   Y  ++    + G   EA N   ++ E+G  P +  +
Sbjct: 370 GKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSY 429

Query: 301 DLVTDGLKNCG 311
           + +   L + G
Sbjct: 430 NTLFGALWSSG 440



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 147/323 (45%), Gaps = 4/323 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M    L     T ++++    K G++D A E  ++ +   C   V  YN LL  L
Sbjct: 237 KLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDL 296

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                +     L+  M+ KG  P+  TY+ L+ A C  GK+ EA+  L+ M +K   P  
Sbjct: 297 LNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDG 356

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              D L+  L   G ++ A + ++ MI  G + D+ ++NS++ ++CK+G  +  + ++  
Sbjct: 357 YSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEK 416

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G   +  +Y  L  A+  +G    A  ++  ++ +G  P    Y  +I  + R G 
Sbjct: 417 LGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGL 476

Query: 243 FDDAFCFFSEM--KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            D A     +M    K  P      T+L+ +C +  R ++A   L  M   G  P    +
Sbjct: 477 VDQAIELLVDMFESEKCQPTVISYNTVLLGLC-KVQRIIDAIEVLAAMVNEGCLPNETTY 535

Query: 301 DLVTDGLKNCG-KHDLAEKIELL 322
            L+  G+   G ++D  E   LL
Sbjct: 536 TLLIQGIGFAGWRYDAMELANLL 558



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 121/249 (48%), Gaps = 2/249 (0%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  ++ K   PD   Y  +++ +C + ++  A + L  M  +GF P V   ++L+     
Sbjct: 134 VMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCG 193

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G L+ A +++++++K      + T+  LIE     G ++  +++   +   GL  D  T
Sbjct: 194 RGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYT 253

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +++  + K GM+D AF  L  + ++G     S Y  +++ +   G+++      S+M 
Sbjct: 254 YNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDML 313

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           +KG  PN   Y+ LIT   R G+  EA N L  M E  L P    +D +   L   GK D
Sbjct: 314 VKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVD 373

Query: 315 LAEKIELLE 323
           LA  IE L+
Sbjct: 374 LA--IEFLD 380



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 13/236 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   L+    +   +I    + G VD A+E  +   +      +L YNS+L +LC+
Sbjct: 344 LKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCK 403

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P+  +Y  L  A  SSG    A   + EM   G +P    
Sbjct: 404 NGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEIT 463

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIK----QGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            + L+  L   G ++ A +++  M +    Q  V+   ++N+++  +CK   +   +E+ 
Sbjct: 464 YNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVI---SYNTVLLGLCKVQRIIDAIEVL 520

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV------EDGHKPFPSLY 230
            ++   G   + +TY +LI  +  AG   +A  L + LV      ED  K F  ++
Sbjct: 521 AAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVNMDAISEDSFKRFQKIF 576


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 7/306 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G   +   +     A + Q  V+ YN LL  LC+++ +H A  L+R M
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 79  IRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           I +G    PD  TY+ L++ +C +GK+ E++E L+E+  +G  P       +V  L  + 
Sbjct: 72  ISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSA 131

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            L  A +++ +MI+ G    L TFN+LI   C+   +E    +   +   G+ ADV TY 
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYN 191

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+  + KAG + EA +LL  +   G  P    Y+  + G+ + G+  DA     +M+  
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDS 251

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM---GLTPISRCFDLVTDGLKNCGKH 313
            H PN   Y  ++    + G+   A   + +M      GL  +   +  V DGL   G+ 
Sbjct: 252 HHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVG--YSTVVDGLCKLGRT 309

Query: 314 DLAEKI 319
             A  +
Sbjct: 310 QEARSV 315



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 6/307 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    +   ++ A  +  K  A   +  V+ YN+L+  LC+      A  L+ RM
Sbjct: 154 TFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD   Y+  V   C SGK+ +A + L++M D   +P V   + ++ GL  +G +
Sbjct: 214 KASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKI 273

Query: 139 ESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++A +M+ +M    G  L++  ++++++ +CK G  +    +  ++ + G   DV TY  
Sbjct: 274 DTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSS 333

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + KAG I+EA   +  +  +G KP    Y  ++ G+   G+  +A     EM   G
Sbjct: 334 LVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGG 393

Query: 258 H-----PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                 PP+   Y  LI    + GR  +A  +   M   G  P    +  + +GL   G+
Sbjct: 394 GGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGR 453

Query: 313 HDLAEKI 319
              AE I
Sbjct: 454 ALQAEMI 460



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 134/276 (48%), Gaps = 6/276 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G +  A ++  +  A  C   V+ Y+S ++ LC+      A+ ++ +M
Sbjct: 189 TYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGY 137
                 P+  TY  +++  C SGK+  A E +++M S  G    V G   +V GL   G 
Sbjct: 249 RDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGR 308

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A+ ++  M + G   D+ T++SL+  +CK+G++E  VE    +   G   +  TY  
Sbjct: 309 TQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHK-----PFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           L+  +   G + EA R++  +   G       P  S Y  +I G+ + G+ DDA  FF  
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           M+ +G  P+   Y+ ++    R GR ++A   L E+
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
            C   ++ +N+L+   C  K    A +L+++M   G   D  TY  L++  C +G+++EA
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++ L+ M   G  P V      V GL  +G +  A Q++ +M       ++ T+N++++ 
Sbjct: 207 EQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDG 266

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +CKSG+++  +EM   +     C  +V  Y  ++  + K G   EA  ++  +   G +P
Sbjct: 267 LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y+ ++ G+ + G+ ++A     EM ++G  PN   Y  L+      GR  EA   +
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386

Query: 286 VEMTEMGLT-----PISRCFDLVTDGLKNCGKHDLAEK 318
            EM+  G       P    ++ +  GL   G+ D A K
Sbjct: 387 EEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALK 424



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  + K G V+ + E+  +  +   +   L+Y  ++ +LC+      A  L+  M
Sbjct: 84  TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEM 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR G  P   T+  L++  C    +  A   LQ+M+  G    V   + L+ GL  AG L
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRL 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+Q++ +M   G   D+  ++S +  +CKSG+V    ++   +       +V TY  +
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTI 263

Query: 199 IPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  + K+G ID A  ++  +   DG       Y+ ++ G+ + G+  +A      M   G
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y+ L+    + G+  EA   + EM   G  P +  +  +  GL +CG+   AE
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAE 383

Query: 318 KI 319
           ++
Sbjct: 384 RM 385



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 6/256 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    +      S  +    K G V +A +V  +    +    V+ YN++L  LC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 65  VKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A  ++ +M    G   +   Y+ +V+  C  G+ +EA+  ++ M+  G  P V 
Sbjct: 270 SGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVV 329

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG---EVEFCV-EM 179
               LV GL  AG +E A + V +M  +G   +  T+ SL+  +C  G   E E  V EM
Sbjct: 330 TYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEM 389

Query: 180 YYSVCKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
                    C   VSTY  LI  + KAG ID+A +    +   G  P    Y+ I++G+ 
Sbjct: 390 SSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLA 449

Query: 239 RRGQFDDAFCFFSEMK 254
           R G+   A    SE++
Sbjct: 450 RSGRALQAEMILSEVR 465



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFA 61
           + +E M+  +   +  T + I++   K G +D A+E+  +  ++  C   V+ Y++++  
Sbjct: 243 QVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC++     A +++  M R G  PD  TY+ LVN  C +GK+ EA E ++EM+ +G  P 
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-----DLETFNSLIETICKSGEVEFC 176
                 LV GL + G L  A++MV +M   G         + T+N+LI  +CK+G ++  
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDA 422

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           ++ +  +   G   D  +Y  ++  ++++G   +A  +L  +
Sbjct: 423 LKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMILSEV 464



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 119/283 (42%), Gaps = 39/283 (13%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G  P+  T+  LVN +   G+  + +  L+ M+ +   P V   + L++GL     
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 138 LESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVE---------------MY 180
              A+++V  MI +G     D+ T+++L+   CK+G+VE   E               MY
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 181 Y----SVCK----------------LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                S+CK                 G C  + T+  LI    +   ++ A  LL  +  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G K     Y  ++ G+ + G+  +A      MK  G  P+   Y+  +    + G+ ++
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           A   L +M +    P    ++ + DGL   GK D A  +E++E
Sbjct: 241 AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTA--LEMME 281


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 134/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K G +D AV +F       C+  +LLYN+L+  LC       +  L++ M
Sbjct: 326 TFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEM 385

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   T   +    C    +  A   L++M   G  P ++    LV+ L   G  
Sbjct: 386 EESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKE 445

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + +  M ++GF  D+  +++ ++ + K  EV+  ++++  +C  G C DV  Y IL
Sbjct: 446 VEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNIL 505

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   I EA  LLH + E G  P    Y  +I G+ +    ++A  F S M  K  
Sbjct: 506 IKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKER 565

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y+ LI      GR  +A     EM   G TP S  +     GL NCG+ + A
Sbjct: 566 EPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEA 623



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 16/247 (6%)

Query: 23  IIEEFGKHG--------LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +++E  KHG        LVD A E F        Q  ++ Y++ L  L +++    A  L
Sbjct: 435 LVKELCKHGKEVEACKFLVDMAEEGF--------QPDIVAYSACLDGLIKIQEVDQALKL 486

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            + +  +G+ PD   Y IL+   C + ++ EAQ  L EM +KG  P     + L+ GL  
Sbjct: 487 FQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCK 546

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
             +LE A   ++ MI++    ++ T+++LI  +C +G  +  + ++  + + G       
Sbjct: 547 TDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIA 606

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y   I  +S  G  +EA   L  + E   KP   +Y  ++           AF    EM 
Sbjct: 607 YMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMV 666

Query: 255 IKGHPPN 261
            KG  P+
Sbjct: 667 DKGKFPD 673



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 30/337 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M+  N+ ++ +T   +I  F K   VD A+ +F+K         + LY+ ++  LC 
Sbjct: 158 IETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCV 217

Query: 65  VKLFHGAYALIRRMIRKGF--VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            K    A  L   M  KGF   PD +    L++++    K  E   F +EM +   +P  
Sbjct: 218 NKDVKKALCLYSEM--KGFKIQPDVKIVTKLISSF---SKEEELTCFFEEMHED-MDP-- 269

Query: 123 RGRDLLVQGLLNA----GYLESAKQMVNKMIKQGFVLDLE----------------TFNS 162
           +   LL   +LN+    G +  A  ++  +     + D E                TF+ 
Sbjct: 270 KASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSI 329

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I  + K+G+++  V ++  + ++G   D+  Y  LI  +  +  + E+  LL  + E G
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESG 389

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P       I   + RR     A     +M+I GH P     T L+    + G+ VEA 
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +LV+M E G  P    +    DGL    + D A K+
Sbjct: 450 KFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKL 486



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 128/320 (40%), Gaps = 22/320 (6%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYA 73
           +SP  L  +I   G  GLV  A  +F++      C      Y  LL  L +         
Sbjct: 28  MSPGALGFLIRCLGNAGLVVEANLLFDQVQKMGLCVPNSYSYTCLLEVLSKSICIDLLEM 87

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            ++ M   G+  DK T   ++  +C+  +  +A +   E+ D+G+        +LV    
Sbjct: 88  RLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGWVDEYV-FSILVLAFS 146

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A +++  M ++   L+ +TF SLI    K   V+  + ++  + K G   D+S
Sbjct: 147 KWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDIS 206

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y ++I  +     + +A  L   +     +P   +   +I    +  +     CFF EM
Sbjct: 207 LYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELT---CFFEEM 263

Query: 254 KIKGHP-PNRPVYTMLITMCGRGGRFVEAANYLVEMT--------EMG--------LTPI 296
                P  +  +Y  ++      G   +A + L  +T        E+G        + P 
Sbjct: 264 HEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPN 323

Query: 297 SRCFDLVTDGLKNCGKHDLA 316
           S  F +V +GL   G  DLA
Sbjct: 324 STTFSIVINGLIKTGDLDLA 343



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 46/108 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I      G  D+A+ ++N+     C    + Y + +  L      + A   +R M
Sbjct: 571 TYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREM 630

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             +   PD   Y  L+NA+        A E LQEM DKG  P +  ++
Sbjct: 631 EEREMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDLHDKN 678


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 151/306 (49%), Gaps = 6/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G + +A+ VF+      C   V+ Y+ LL A C+   +  A AL+  M
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEM 312

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY +L+NA C+ G + EA   L  +   G  P       +++ L  +   
Sbjct: 313 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERW 372

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +  ++++ +M       D  TFN+++ ++C+ G V+  +E+   + + G  AD+ TY  +
Sbjct: 373 KEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSI 432

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A  LL  L   G KP    Y  ++KG+    Q++ A    +EM     
Sbjct: 433 LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDC 492

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP+   + T++ ++C +G   V+ A  +VE M+E G +P    ++ + DGL  C +  + 
Sbjct: 493 PPDEVTFNTVVASLCQKG--LVDRAIRVVEQMSENGCSPDIVTYNCIIDGL--CNESCID 548

Query: 317 EKIELL 322
           + +ELL
Sbjct: 549 DAMELL 554



 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 141/291 (48%), Gaps = 2/291 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     S    T + II+       +D+A+E+ +   +  C+  ++ +N+LL  L
Sbjct: 517 RVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGL 576

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C V  +  A  L+  M+R    PD+ T+  ++ + C  G + +A E L+ M++ G  P  
Sbjct: 577 CGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNS 636

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               ++V  LL AG  ++A ++++ M       DL T+N++I  + K+G++E  +++   
Sbjct: 637 STYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLLRV 694

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GLC D +TY+ L   V +    D A R+L  + + G  P  + Y  ++ G  R  +
Sbjct: 695 MVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRR 754

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            D A   F+ M   G  P+   Y +L+     GG   EA   L  +  +G+
Sbjct: 755 TDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 146/314 (46%), Gaps = 7/314 (2%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           KP  ++ +P   SL   E  K        E+  + T+ NC    + +N+++ +LC+  L 
Sbjct: 353 KPDAVTYTPVLKSLCGSERWKE-----VEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLV 407

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  ++  M   G V D  TY+ +++  C  G++ +A E L  +   G  P       +
Sbjct: 408 DRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTV 467

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL +    E A++++ +M+      D  TFN+++ ++C+ G V+  + +   + + G 
Sbjct: 468 LKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D+ TY  +I  +     ID+A  LL +L   G KP    +  ++KG+    +++DA  
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             + M     PP+   +  +IT   + G   +A   L  M E G  P S  + +V D L 
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALL 647

Query: 309 NCGKHDLAEKIELL 322
             GK   A  +ELL
Sbjct: 648 KAGKAQAA--LELL 659



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 144/327 (44%), Gaps = 8/327 (2%)

Query: 2   WKTIEL----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +E     M   N +    T + I+    + GLVD A+EV +  +   C   ++ Y+S
Sbjct: 372 WKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSS 431

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  LC+V     A  L+ R+   G  PD   Y  ++   CS+ +   A+E + EM    
Sbjct: 432 ILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSD 491

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     + +V  L   G ++ A ++V +M + G   D+ T+N +I+ +C    ++  +
Sbjct: 492 CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAM 551

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+   +   G   D+ T+  L+  +      ++A +L+ N++     P    +  +I  +
Sbjct: 552 ELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSL 611

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A      M   G  PN   Y++++    + G+   A   L  MT    TP  
Sbjct: 612 CQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDL 669

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLEV 324
             ++ V   L   GK  + E ++LL V
Sbjct: 670 ITYNTVISNLTKAGK--MEEALDLLRV 694



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 154/348 (44%), Gaps = 41/348 (11%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T S++++   K      A+ + ++  A  C+  ++ YN L+ A+C       A  
Sbjct: 283 SPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 342

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  +   G  PD  TY  ++ + C S + +E +E L EM+     P     + +V  L 
Sbjct: 343 ILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLC 402

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM-------------- 179
             G ++ A ++V+ M + G V D+ T++S+++ +C  G V+  VE+              
Sbjct: 403 QQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTI 462

Query: 180 -YYSVCKLGLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHN 217
            Y +V K GLC+                     D  T+  ++ ++ + G++D A R++  
Sbjct: 463 AYTTVLK-GLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQ 521

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGG 276
           + E+G  P    Y  II G+      DDA    S+++  G  P+   + T+L  +CG   
Sbjct: 522 MSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGV-D 580

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           R+ +A   +  M      P    F+ V   L  C K  L + IE L++
Sbjct: 581 RWEDAEQLMANMMRSNCPPDELTFNTVITSL--CQKGLLTQAIETLKI 626



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 129/301 (42%), Gaps = 2/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + GLVD A+ V  + +   C   ++ YN ++  LC       A  L+  +
Sbjct: 498 TFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL 557

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  T+  L+   C   +  +A++ +  M      P     + ++  L   G L
Sbjct: 558 QSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLL 617

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + +  M + G V +  T++ +++ + K+G+ +  +E+   +       D+ TY  +
Sbjct: 618 TQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM--TNGTPDLITYNTV 675

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++KAG ++EA  LL  +V +G  P  + Y  +  G+ R    D A      ++  G 
Sbjct: 676 ISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGL 735

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  ++    R  R   A +    M   G  P    + ++ + L   G  D A++
Sbjct: 736 SPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKR 795

Query: 319 I 319
           +
Sbjct: 796 L 796



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 118/302 (39%), Gaps = 43/302 (14%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+     G V +A  VF    A      V+ YN+++   C       A  LI  M  
Sbjct: 191 NILIKRLCSDGRVSDAERVF---AALGPSATVVTYNTMVNGYCRAGRIEDARRLINGM-- 245

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
             F PD  T+  L+ A C  G++ +A     +M  +G +P V    +L+           
Sbjct: 246 -PFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQ 304

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++++M  +G   D+ T+N LI  +C  G+V                           
Sbjct: 305 AMALLDEMRAKGCEPDIVTYNVLINAMCNEGDV--------------------------- 337

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
                   DEA  +L NL   G KP    Y P++K +    ++ +     +EM      P
Sbjct: 338 --------DEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAP 389

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           +   +  ++T   + G    A   +  M+E G       +  + DGL + G+ D  + +E
Sbjct: 390 DEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVD--DAVE 447

Query: 321 LL 322
           LL
Sbjct: 448 LL 449


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G +D A+    K  ++ CQ  V+ +N +L +LC    +  A  L+  M
Sbjct: 253 TYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATM 312

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG +P   T+ IL+N  C  G + +A   L+ M   G  P  R  + L+QG  N   +
Sbjct: 313 LRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGI 372

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+ +G   D+ T+N L+  +CK G+V+  V +   +   G    + +Y  +
Sbjct: 373 DRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 432

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G  + A  LL  +   G KP       ++ G+ R G+  +A  FF  +K    
Sbjct: 433 IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAI 492

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y  +IT   +  +   A ++L +M   G  P    +  +  G+   G  + A K
Sbjct: 493 RPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASK 552

Query: 319 I 319
           +
Sbjct: 553 L 553



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 150/309 (48%), Gaps = 5/309 (1%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +   + +++I  + K G ++ A+ V ++            Y+++L +LC+      A  +
Sbjct: 147 IDVTSYNVLISGYCKSGEIEEALRVLDR---MGVSPNAATYDAVLCSLCDRGKLKQAMQV 203

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           + R ++    PD  T  +L++A C    + +A +   EM +KG  P V   ++L++G   
Sbjct: 204 LGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCK 263

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G L+ A + + K+   G   D+ + N ++ ++C  G     +++  ++ + G    V T
Sbjct: 264 GGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVT 323

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           + ILI  + + G++ +A  +L  + + GH P    + P+I+G       D A  +   M 
Sbjct: 324 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMV 383

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  P+   Y +L+T   + G+  +A   L +++  G +P    ++ V DGL   GK +
Sbjct: 384 SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAE 443

Query: 315 LAEKIELLE 323
           LA  +ELLE
Sbjct: 444 LA--VELLE 450



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K   V  A+++FN+     C+  V+ YN L+   C+      A   ++++
Sbjct: 218 TCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  ++ +++ + CS G+  +A + L  M  KG  P V   ++L+  L   G L
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLL 337

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M K G   +  +FN LI+  C    ++  +E    +   G   D+ TY IL
Sbjct: 338 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNIL 397

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G +D+A  +L  L   G  P    Y  +I G+ + G+ + A     EM  KG 
Sbjct: 398 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 457

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+    T ++    R G+  EA  +   +    + P +  ++ +  GL    +  LA
Sbjct: 458 KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLA 515



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 5/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+   +L+   C++     A  ++  +   G V D  +Y +L++ +C SG++ EA   L 
Sbjct: 114 VIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLD 173

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G +P     D ++  L + G L+ A Q++ + ++     D+ T   LI+  CK  
Sbjct: 174 RM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKES 230

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   ++++  +   G   DV TY +LI    K G +DEA R L  L   G +P    + 
Sbjct: 231 GVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHN 290

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I++ +   G++ DA    + M  KG  P+   + +LI    + G   +A N L  M + 
Sbjct: 291 MILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 350

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G TP SR F+ +  G   C    +   IE LE+
Sbjct: 351 GHTPNSRSFNPLIQGF--CNGKGIDRAIEYLEI 381



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 131/302 (43%), Gaps = 2/302 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + VSP   T   ++      G +  A++V  +     C   V+    L+ A C+      
Sbjct: 175 MGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQ 234

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M  KG  PD  TY +L+  +C  G++ EA  FL+++   G  P V   +++++
Sbjct: 235 AMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILR 294

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L + G    A +++  M+++G +  + TFN LI  +C+ G +   + +   + K G   
Sbjct: 295 SLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTP 354

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  ++  LI        ID A   L  +V  G  P    Y  ++  + + G+ DDA    
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVIL 414

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           S++  KG  P+   Y  +I    + G+   A   L EM   GL P       V  GL   
Sbjct: 415 SQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSRE 474

Query: 311 GK 312
           GK
Sbjct: 475 GK 476



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 115/257 (44%), Gaps = 34/257 (13%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ E   FL+ M++KG +P V     L++     G  ++A Q++  + + G V+D+ +
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N LI   CKSGE+E  + +            Y      LC                   
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV T  +LI A  K   + +A +L + +   G KP    Y  +IKG  + G+ D+A 
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAI 271

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            F  ++   G  P+   + M++     GGR+++A   L  M   G  P    F+++ + L
Sbjct: 272 RFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFL 331

Query: 308 KNCGKHDLAEKIELLEV 324
             C K  L + + +LE+
Sbjct: 332 --CQKGLLGKALNVLEM 346



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+M  +  + + ++ + +I+ F     +D A+E      +  C   ++ YN LL ALC+
Sbjct: 344 LEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCK 403

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++ ++  KG  P   +Y  +++     GK   A E L+EM  KG  P +  
Sbjct: 404 DGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 463

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +V GL   G +  A +  + + +     +   +NS+I  +CKS +    ++    + 
Sbjct: 464 CTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMV 523

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
             G     +TY  LI  ++  G+ ++A +L + L   G
Sbjct: 524 AKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 40/231 (17%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M  +G   D+    +LI   CK G  +   ++   + + G   D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD------- 244
           V++Y +LI    K+G I+EA R+L  +   G  P  + Y  ++  +  RG+         
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 245 ------------------DAFC----------FFSEMKIKGHPPNRPVYTMLITMCGRGG 276
                             DA C           F+EM+ KG  P+   Y +LI    +GG
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           R  EA  +L ++   G  P     +++   L  C      + ++LL   LR
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSL--CSGGRWMDAMKLLATMLR 314



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 35/171 (20%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G VD+AV + ++ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 393 TYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEM 452

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQ------------------------------- 107
             KG  PD  T   +V      GK+REA                                
Sbjct: 453 CYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQT 512

Query: 108 ----EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
               +FL +M  KG  P       L++G+   G  E A ++ N++  +G V
Sbjct: 513 SLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRGLV 563


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 131/265 (49%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M     S S   +S ++E   K G V+ A+ +  +   F     + +YN+L+ +LC+
Sbjct: 320 IDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCK 379

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  A  L  RM + G  P+  TY+IL++ +C  GK+  A  FL EM D G  P V  
Sbjct: 380 GRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYP 439

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G + +A+ ++ +MI +     + T+ SL+   C  G++   + +Y+ + 
Sbjct: 440 YNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMT 499

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+   + T+  L+  + +AG+I +A +L   + E   KP    Y  +I+G    G   
Sbjct: 500 GKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMS 559

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLI 269
            AF F +EM  KG  P+   Y  LI
Sbjct: 560 KAFEFLNEMIEKGIVPDTYSYRPLI 584



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 122/279 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +  A E+  +  A  C   ++ YN L+  LC+ +    A  + + +  K   PD  TY  
Sbjct: 243 LSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCT 302

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           LV   C   +     E + EM    F+P       LV+GL   G +E A  +V ++ + G
Sbjct: 303 LVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFG 362

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++  +N+LI+++CK    +    ++  + K+GLC +  TY ILI    + G +D A 
Sbjct: 363 VSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTAL 422

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  +++ G KP    Y  +I G  + G    A    +EM  K   P    YT L+   
Sbjct: 423 SFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGY 482

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              G+  +A     EMT  G+ P    F  +  GL   G
Sbjct: 483 CSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAG 521



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 125/293 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F + G +D A+    +      +  V  YNSL+   C+      A +L+  M
Sbjct: 404 TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEM 463

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P   TY  L+  +CS GK+ +A     EM+ KG  P +     L+ GL  AG +
Sbjct: 464 INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLI 523

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M +     +  T+N +IE  C+ G +    E    + + G+  D  +Y+ L
Sbjct: 524 RDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPL 583

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G   EA   +  L +   +     Y  ++ G  R G+ ++A     +M ++G 
Sbjct: 584 IHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGV 643

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             +   Y +LI    +          L EM + GL P    +  + D     G
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTG 696



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 140/341 (41%), Gaps = 37/341 (10%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + ++    + GL+ +AV++F +   +N +   + YN ++   CE      A+  +
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFL 565

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             MI KG VPD  +Y  L++  C +G+  EA+ F+  +              L+ G    
Sbjct: 566 NEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCRE 625

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G LE A  +   M  +G  LDL  +  LI+   K  + +  + +   +   GL  D   Y
Sbjct: 626 GKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIY 685

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK- 254
             +I A SK G   EAF +   ++ +G  P    Y  +I G+ + G  ++A    S+M+ 
Sbjct: 686 TSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRP 745

Query: 255 ----------------------------------IKGHPPNRPVYTMLITMCGRGGRFVE 280
                                             +KG   N   Y MLI    R GR  E
Sbjct: 746 GNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEE 805

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           A+  +  M   G++P   C    T   + C ++D+ + IEL
Sbjct: 806 ASELITRMIGDGVSP--DCITYTTMISELCRRNDVKKAIEL 844



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 138/313 (44%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +M   +L    +TLS ++    K      A+E+F+       +  V +Y  ++ +LCE+K
Sbjct: 182 MMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELK 241

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  +I +M   G   +   Y +L++  C   K+ EA    ++++ K   P V    
Sbjct: 242 DLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYC 301

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            LV GL      E   +M+++M++  F       +SL+E + K G+VE  + +   V + 
Sbjct: 302 TLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEF 361

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  ++  Y  LI ++ K    DEA  L   + + G  P    Y+ +I    RRG+ D A
Sbjct: 362 GVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTA 421

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F  EM   G  P+   Y  LI    + G    A + + EM    L P    +  +  G
Sbjct: 422 LSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGG 481

Query: 307 LKNCGKHDLAEKI 319
             + GK + A ++
Sbjct: 482 YCSKGKINKALRL 494



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 11/313 (3%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           PYN+         +I+   K   V  AV +         +  V+ Y +L+  LC+V+ F 
Sbjct: 264 PYNV---------LIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFE 314

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
               +I  M+R  F P +   + LV      GK+ EA   ++ +++ G +P +   + L+
Sbjct: 315 VGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALI 374

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L      + A+ + ++M K G   +  T++ LI+  C+ G+++  +     +  +GL 
Sbjct: 375 DSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLK 434

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V  Y  LI    K G I  A  L+  ++    +P    Y  ++ G   +G+ + A   
Sbjct: 435 PSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRL 494

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           + EM  KG  P+   +T L++   R G   +A     EM E  + P    ++++ +G   
Sbjct: 495 YHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGY-- 552

Query: 310 CGKHDLAEKIELL 322
           C + ++++  E L
Sbjct: 553 CEEGNMSKAFEFL 565



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 5/231 (2%)

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K+F G   L++ M  +G  PD   Y  +++A   +G  +EA      M ++G  P     
Sbjct: 664 KVFLG---LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYYSVC 184
             ++ GL  AG++  A+ + +KM     V +  T+   ++ + K  G+++  VE++ ++ 
Sbjct: 721 TAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL 780

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K GL A+ +TY +LI    + G ++EA  L+  ++ DG  P    Y  +I  + RR    
Sbjct: 781 K-GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVK 839

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            A   ++ M  KG  P+R  Y  LI  C   G   +A     EM   GL P
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKP 890



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y S++ A  +   F  A+ +   MI +G VP++ TY  ++N  C +G + EA+    +
Sbjct: 683 VIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSK 742

Query: 113 MSDKGFNPPVRGR-----DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           M   G + P +       D+L +G+   G ++ A ++ N ++K G + +  T+N LI   
Sbjct: 743 MR-PGNSVPNQVTYGCFLDILTKGV---GDMKKAVELHNAILK-GLLANTATYNMLIRGF 797

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C+ G +E   E+   +   G+  D  TY  +I  + +   + +A  L +++ E G +P  
Sbjct: 798 CRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDR 857

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             Y  +I G    G+   A    +EM  +G  PN       I+
Sbjct: 858 VAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTIS 900



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 115/289 (39%), Gaps = 35/289 (12%)

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           ++  G       M +   +P+ RT + L++          A E   +M + G  P V   
Sbjct: 171 RVLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIY 230

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             +++ L     L  AK+M+ +M   G  +++  +N LI+ +CK  +V   V +   +  
Sbjct: 231 TGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAG 290

Query: 186 LGLCADVSTY-----------------------------------KILIPAVSKAGMIDE 210
             L  DV TY                                     L+  + K G ++E
Sbjct: 291 KELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEE 350

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  + E G  P   +Y  +I  + +   FD+A   F  M   G  PN   Y++LI 
Sbjct: 351 ALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILID 410

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M  R G+   A ++L EM +MGL P    ++ + +G    G    AE +
Sbjct: 411 MFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +   I KG + +  TY +L+  +C  G+M EA E +  M   G +P       ++  L  
Sbjct: 775 LHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCR 834

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              ++ A ++ N M ++G   D   +N+LI   C +GE+    E+   + + GL  +  T
Sbjct: 835 RNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894

Query: 195 YKILIPAVSKA 205
            +  I   S +
Sbjct: 895 SETTISNDSSS 905



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MWKTIELMKPY--NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           M K +EL       L  +  T +++I  F + G ++ A E+  +          + Y ++
Sbjct: 769 MKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTM 828

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC       A  L   M  KG  PD+  Y  L++  C +G+M +A E   EM  +G 
Sbjct: 829 ISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888

Query: 119 NP 120
            P
Sbjct: 889 KP 890


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 144/297 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ F K G +  A  +F +     C   V  YNSLL        F    +L + M+R
Sbjct: 161 NVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLR 220

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G VP+  T+  L++ +C  G M EA     EM   G  P V   + L++G+ + G    
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHE 280

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A++++ +MI+ G   D+ ++N LI+   KSG ++  ++++Y + K GL  D  +Y  +I 
Sbjct: 281 AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + +AG +  AF +  +++ +G  P  ++  P++ G+ R  +  ++   F  M      P
Sbjct: 341 CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P Y +L+    +  R  +      E+TE G +P      ++ + L+     D AE
Sbjct: 401 LIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAAE 457



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 138/309 (44%), Gaps = 2/309 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S++I    +   VD A E+ N+      Q  V+ Y SLL  LC++     A  L  RM
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD   Y +L++ +   G M EA    +EM +KG  P V   + L+ G    G  
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + +   M++QG V ++ TFN+L++  CK G++     ++  +  LG   DV +Y  L
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTL 268

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G   EA RLL  ++  G  P    Y  +I G  + G  D A   F E+   G 
Sbjct: 269 IRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ +I    R G+   A     +M   G  P +     +  GL  C    L E 
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL--CRGERLTES 386

Query: 319 IELLEVSLR 327
            EL +  ++
Sbjct: 387 CELFQAMVK 395



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 137/302 (45%), Gaps = 2/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + ++E   K G  D+    +N   A  C      Y  LL +LC+ + F  A ++ R M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  +Y+IL+   C   K+ EA E L EM D G  P V     L+ GL   G L
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M+ +G   D   +N LI+   K G++     ++  + + G    V TY  L
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G       L  +++  G  P    +  ++ G  + G   +A   F EM+  G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           PP+   Y  LI  MC + G+  EA   L EM   G+ P    ++++ DG    G  D A 
Sbjct: 259 PPDVVSYNTLIRGMCSK-GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 318 KI 319
           K+
Sbjct: 318 KL 319



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L YN LL  L +       Y     M+  G VP+  TY  L+ + C + +  EA+   +
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ +G +P V    +L+ GL     ++ A +++N+MI  G   ++ T+ SL+  +CK G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++  V+++  +   G   D   Y +LI   SK G + EA+RL   ++E G  P    Y 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G  R+G+F      F +M  +G  PN   +  L+    + G  VEA    +EM  +
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           G  P    ++ +  G+  C K    E   LL   +RS
Sbjct: 257 GCPPDVVSYNTLIRGM--CSKGKPHEAQRLLREMIRS 291



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 123/279 (44%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A  VF    A  C   V  Y+ L+  LC  +    A  L+  MI  G  P+  TY  L
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C  GK++EA +    M  +G  P     ++L+ G    G +  A ++  +M+++G 
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           +  + T+NSL+    + GE      ++  + + G   ++ T+  L+    K G + EA R
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G  P    Y  +I+GM  +G+  +A     EM   G  P+   Y +LI    
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + G    A     E+ + GL P +  +  + D L   GK
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGK 347



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%)

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           +N      + L++ L  +G  +      N M+  G V +  T+  L+ ++C++   E   
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  +   G   +V +Y ILI  + +   +DEA  LL+ +++ GH+P    Y  ++ G+
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+  +A   FS M  +G PP+  VY +LI    + G   EA     EM E G  P  
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 298 RCFDLVTDGLKNCGK 312
             ++ +  G    G+
Sbjct: 193 FTYNSLLSGFSRKGE 207



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 100/228 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K G +  A  +F +  +  C   V+ YN+L+  +C     H A  L+R M
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREM 288

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR G  PD  +Y IL++ +  SG +  A +   E+   G  P       ++  L  AG +
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  +   MI  G   D      L+  +C+   +    E++ ++ K      +  Y +L
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           +  + KA   D+   + H L E G  P   +   I++ + R    D A
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAA 456


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 136/279 (48%), Gaps = 1/279 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++I      G  + AVE+    + F C   ++ YN+L+   C+      A  +   
Sbjct: 207 KTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDD 266

Query: 78  M-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           +    G  PD  TY  +++ +C +GKM+EA   L +M   G  P     ++LV G   AG
Sbjct: 267 VKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            + +A+++  KMI  G   D+ TF SLI+  C+ G+V     ++  +   G+  +  TY 
Sbjct: 327 EMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYS 386

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ILI A+ K   + +A  LL  L      P P +Y P+I G  + G+ ++A     EM+ K
Sbjct: 387 ILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKK 446

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              P++  +T+LI      GR  EA +   +M  +G +P
Sbjct: 447 KCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSP 485



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 147/319 (46%), Gaps = 5/319 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S + + L  ++  F + G +  A  +  +  ++  + C ++ NSLL  L ++
Sbjct: 127 ECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLLQ--SYEVEGCCMVVNSLLNTLVKL 184

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L    +R     D +T+ IL+   C  GK  +A E L  MS  G  P +   
Sbjct: 185 DRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTY 244

Query: 126 DLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           + L++G   +  L+ A +M + +    G   D+ T+ S+I   CK+G+++    +   + 
Sbjct: 245 NTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDML 304

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +LG+     T+ +L+   +KAG +  A  +   ++  G  P    +  +I G  R GQ +
Sbjct: 305 RLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVN 364

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             F  + EM  +G  PN   Y++LI    +  R ++A   L ++    + P    ++ V 
Sbjct: 365 QGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVI 424

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DG    GK  + E I ++E
Sbjct: 425 DGFCKAGK--VNEAIVIVE 441



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 96/196 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ + K G +  A E+  K  +F C   V+ + SL+   C V   +  + L   M
Sbjct: 314 TFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEM 373

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY+IL+NA C   ++ +A+E L +++ K   P     + ++ G   AG +
Sbjct: 374 NARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKV 433

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V +M K+    D  TF  LI   C  G +   V +++ +  +G   D  T   L
Sbjct: 434 NEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSL 493

Query: 199 IPAVSKAGMIDEAFRL 214
           +  + KAGM  EA+ L
Sbjct: 494 LSCLLKAGMAKEAYHL 509


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 145/297 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++  +      Q  V++YN+++ ++C+VKL + A+ L   M+ KG
Sbjct: 167 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 226

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L++ +C  GK+ +A     +M  +  NP V    +LV G    G ++ AK
Sbjct: 227 ISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAK 286

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+KQG   D+ T+ SL++  C   +V     ++ ++ + G+ A+V +Y I+I   
Sbjct: 287 NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGF 346

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +DEA  L   +      P    Y  +I G+ + G+   A     EM  +G P ++
Sbjct: 347 CKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDK 406

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  ++    +  +  +A   L +M + G+ P    + ++ DGL   G+   A+ I
Sbjct: 407 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNI 463



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 155/307 (50%), Gaps = 2/307 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I  F   G +++A+ +FNK  +      V  ++ L+   C+      A 
Sbjct: 227 ISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAK 286

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M+++G  PD  TY  L++ +C   ++ +A+     M+  G    V+  ++++ G 
Sbjct: 287 NVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGF 346

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                ++ A  +  +M  +  + D+ T+NSLI+ +CKSG++ + +++   +   G+  D 
Sbjct: 347 CKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDK 406

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++ A+ K   +D+A  LL  + ++G +P    Y  +I G+ + G+  DA   F +
Sbjct: 407 ITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFED 466

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +KG+      YT++I        F +A   L +M + G  P ++ ++++   L    +
Sbjct: 467 LLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDE 526

Query: 313 HDLAEKI 319
           +D+AEK+
Sbjct: 527 NDMAEKL 533



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 133/304 (43%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G +  A+   +K  A       + Y +L+  LC+V     A  L+RR+
Sbjct: 128 TLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRV 187

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+   Y  ++++ C    + EA +   EM  KG +P V     L+ G    G L
Sbjct: 188 DGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKL 247

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + NKMI +    D+ TF+ L++  CK G V+    +   + K G+  DV TY  L
Sbjct: 248 NDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSL 307

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +++A  + + + + G       Y  +I G  +  + D+A   F EM  K  
Sbjct: 308 MDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    + G+   A   + EM + G+      ++ + D L  C  H + + 
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL--CKNHQVDKA 425

Query: 319 IELL 322
           I LL
Sbjct: 426 IALL 429



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 122/270 (45%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
           V  FN+    N    +  +  +L +L ++  +  A +L R M   G   D  T+ IL+N 
Sbjct: 41  VSSFNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINC 100

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +   G    +      +  KG+ P       L++GL   G +  A    +K++  GF L+
Sbjct: 101 FSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLN 160

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
              + +LI  +CK G+    +++   V    +  +V  Y  +I ++ K  +++EAF L  
Sbjct: 161 KVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYS 220

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +V  G  P    Y+ +I G    G+ +DA   F++M  +   P+   +++L+    + G
Sbjct: 221 EMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEG 280

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           R  EA N L  M + G+ P    +  + DG
Sbjct: 281 RVKEAKNVLAMMMKQGIKPDVVTYCSLMDG 310



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 101/225 (44%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  +FN          V  YN ++   C++K    A  L + M  K  +PD  TY  
Sbjct: 317 VNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNS 376

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SGK+  A + + EM D+G        + ++  L     ++ A  ++ KM  +G
Sbjct: 377 LIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEG 436

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+  LI+ +CK G ++    ++  +   G    V TY ++I       + D+A 
Sbjct: 437 IQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKAL 496

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LL  + ++G  P    Y  II  +F + + D A     EM  +G
Sbjct: 497 ALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARG 541



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 128/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  F + G    +  VF        +   +   +L+  LC     H A     ++
Sbjct: 93  TFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKV 152

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF  +K  Y  L+N  C  G+   A + L+ +  K   P V   + ++  +     +
Sbjct: 153 VALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLV 212

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M+ +G   D+ T+++LI   C  G++   + ++  +    +  DV T+ IL
Sbjct: 213 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSIL 272

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G + EA  +L  +++ G KP    Y  ++ G     Q + A   F+ M   G 
Sbjct: 273 VDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGV 332

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   Y ++I    +  +  EA N   EM    + P    ++ + DGL   GK   A K
Sbjct: 333 TANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALK 392

Query: 319 I 319
           +
Sbjct: 393 L 393



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 105/210 (50%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++ + Q+ +++I  F K   VD A+ +F +    N    V+ YNSL+  LC+      A 
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYAL 391

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  +G   DK TY  +++A C + ++ +A   L +M D+G  P +    +L+ GL
Sbjct: 392 KLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGL 451

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A+ +   ++ +G+ + + T+  +I+  C +   +  + +   +   G   + 
Sbjct: 452 CKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNA 511

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            TY+I+I ++ +    D A +LL  ++  G
Sbjct: 512 KTYEIIILSLFEKDENDMAEKLLREMIARG 541



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 87/170 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G +  A+++ ++          + YNS+L ALC+      A AL+ +M
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY IL++  C  G++++AQ   +++  KG+N  V    +++QG  +    
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + A  +++KM   G + + +T+  +I ++ +  E +   ++   +   GL
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 62/137 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++   K+  VD A+ +  K      Q  +  Y  L+  LC+      A  +   +
Sbjct: 408 TYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDL 467

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG+     TY +++  +C +    +A   L +M D G  P  +  ++++  L      
Sbjct: 468 LVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDEN 527

Query: 139 ESAKQMVNKMIKQGFVL 155
           + A++++ +MI +G + 
Sbjct: 528 DMAEKLLREMIARGLLF 544



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 4/146 (2%)

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           SL++  C    +    EM ++    G+ +D+ T+ ILI   S+ G    +F +  N+++ 
Sbjct: 65  SLVKINCYQTAISLHREMEFN----GIASDLVTFNILINCFSQLGHTHFSFSVFANILKK 120

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G++P       +IKG+  +GQ   A  F  ++   G   N+  Y  LI    + G+   A
Sbjct: 121 GYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAA 180

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGL 307
              L  +    + P    ++ + D +
Sbjct: 181 LQLLRRVDGKLVQPNVVMYNTIIDSM 206



 Score = 45.1 bits (105), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 51/111 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +     T +++I+   K G + +A  +F           V  Y  ++   C+  L
Sbjct: 432 MKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDL 491

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           F  A AL+ +M   G +P+ +TY I++ +     +   A++ L+EM  +G 
Sbjct: 492 FDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL 542


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 149/309 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    T + +I+ +GK G ++    +FN+     C   ++ YN L+   C+ + 
Sbjct: 315 MREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 374

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+     M   G  P+  TY+ L++A+C  G M+ A +   +M   G  P       
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AG L  A +++N M++ G  L++ T+ +L++ +CK+G +    E++ S+ K G
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  L+    KA  +++A ++L  + E   KP   LY  II G   + + ++  
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EMK +G   N  + T +I    + G+  +A N+  EM ++G+      + ++ DGL
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 308 KNCGKHDLA 316
              G  +LA
Sbjct: 615 CKAGIVELA 623



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 142/319 (44%), Gaps = 8/319 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +      ++ + ++    K G      + FN          V  YN ++  LC+   
Sbjct: 245 MRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGD 304

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              +  L  +M   G  PD  TY  L++ +   G + E      EM D G  P +   + 
Sbjct: 305 LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNG 364

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        +  A +  ++M   G   ++ T+++LI+  CK G ++  ++++  + + G
Sbjct: 365 LINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTG 424

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  KAG + EA++LL+++++ G K     Y  ++ G+ + G+  +A 
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG- 306
             F  M   G  PN+ VYT L+    +  R  +A   L +MTE  + P     DL+  G 
Sbjct: 485 EVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKP-----DLILYGS 539

Query: 307 --LKNCGKHDLAEKIELLE 323
               +C +  L E   +LE
Sbjct: 540 IIWGHCSQRKLEETKLILE 558



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 150/353 (42%), Gaps = 37/353 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T S +I+ F K G++  A+++F              Y SL+ A C+   
Sbjct: 385 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGN 444

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L+  M++ G   +  TY  L++  C +G+M EA+E  + M   G +P  +    
Sbjct: 445 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 504

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC------------------- 168
           LV G + A  +E A +++ +M +     DL  + S+I   C                   
Sbjct: 505 LVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRG 564

Query: 169 ----------------KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
                           K+G+    +  +  +  +G+ A + TY +LI  + KAG+++ A 
Sbjct: 565 ISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAV 624

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                ++  G +P  ++Y  +I G+ +    + A   F EM+ +G  P+   +T LI   
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLE 323
            + G   EA   +  MTE+ +      +  +  G   CG+   A K   E++E
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIE 737



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 132/281 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S + Q  + ++  + K   +++A+++  + T  N +  ++LY S+++  C  +      
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M  +G   +      +++A+  +GK  +A  F QEM D G    +    +L+ GL
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +E A     +M+  G   ++  + SLI+ +CK+  +E   +++  +   G+  D+
Sbjct: 615 CKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDI 674

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + +  LI    K G + EA  L+  + E   +    +Y  ++ G  + G+   A  FF+E
Sbjct: 675 TAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNE 734

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           M  KG  P   +   L+    + G+  EA     EM  MGL
Sbjct: 735 MIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGL 775



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 117/266 (43%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +++ L     E+ L   A     RM     +P  R+   L++    SG  +  ++F  +M
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V   ++++  L   G LE+++++  +M + G   D+ T+NSLI+   K G +
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSL 340

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E    ++  +  +G   D+ TY  LI    K   +  AF     +  +G KP    Y+ +
Sbjct: 341 EEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTL 400

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + G    A   F +M+  G  PN   YT LI    + G   EA   L +M + G+
Sbjct: 401 IDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGV 460

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
                 +  + DGL   G+   AE++
Sbjct: 461 KLNIVTYTALLDGLCKAGRMIEAEEV 486



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 93/210 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S +P   + II+ + K G   +A+  F +      +  ++ Y  L+  LC+
Sbjct: 557 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCK 616

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +   A     RM+  G  P+   Y  L++  C +  +  A++   EM  +G  P +  
Sbjct: 617 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITA 676

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G L  G L+ A  ++++M +     DL  + SL+    + GE+    + +  + 
Sbjct: 677 FTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMI 736

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           + G+  +      L+    K G +DEA  L
Sbjct: 737 EKGILPEEVLCICLLREYYKRGQLDEAIEL 766



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 87/189 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +  +  T  ++I+   K G+V+ AV+ F +  +   Q  V +Y SL+  LC+   
Sbjct: 595 MQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNC 654

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G  PD   +  L++     G ++EA   +  M++      +     
Sbjct: 655 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 714

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV G    G L  A++  N+MI++G + +      L+    K G+++  +E+   + ++G
Sbjct: 715 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMG 774

Query: 188 LCADVSTYK 196
           L  + +T +
Sbjct: 775 LITESATMQ 783


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 134/273 (49%), Gaps = 1/273 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K      A EV  +  A         Y++L+  LC+      A  ++RRM
Sbjct: 164 TYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 223

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD   Y+ +++A+C SGK+ EAQ+ LQEM  +  +P V   + ++ GL   G +
Sbjct: 224 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKI 283

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+ ++++M + G VL D+ T++++I  +CKS  +    ++   +CK G   DV TY  
Sbjct: 284 AEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 343

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K G ++EA  LL  +   G  P    Y  +I G+ +  + D+A     EM+  G
Sbjct: 344 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 403

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            PPN   Y  ++      GR  EA   +  M +
Sbjct: 404 CPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKD 436



 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 151/302 (50%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K G VD+A ++     A   +  V+ Y++L+  LC+ + F  A  ++  M
Sbjct: 129 TFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM 188

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY+ L++  C + K+ EA++ L+ M+  G  P V     ++     +G L
Sbjct: 189 KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYKI 197
             A++ + +M KQ    D+ T+N++I+ +CK G++     +   + + G +  DV TY  
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYST 308

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K+ M+ EA +LL  + + G  P    Y  II G+ + G+ ++A      MK  G
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   YT LI+   +  +  EA   + EM   G  P    ++ + +GL   G+   A+
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQ 428

Query: 318 KI 319
           ++
Sbjct: 429 QL 430



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 150/320 (46%), Gaps = 6/320 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    +    T + II      G +D A++      +  C   V+ Y +L+ A   
Sbjct: 13  LEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAFAR 69

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  L+  M  +G  P+  TY +LV+A C    +  AQ+ +++M + GF P V  
Sbjct: 70  AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 129

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV G    G ++ A++++  M+ +G   ++ T+++LI+ +CKS +     E+   + 
Sbjct: 130 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK 189

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  D  TY  LI  + KA  I+EA ++L  +   G  P   +Y+ II    + G+  
Sbjct: 190 ASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLL 249

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLV 303
           +A     EM+ +   P+   Y  +I    + G+  EA   L +M E G + P    +  V
Sbjct: 250 EAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTV 309

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            +GL  C    L E  +LL+
Sbjct: 310 INGL--CKSDMLVEAQKLLD 327



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 123/282 (43%), Gaps = 32/282 (11%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDK--------------------------------RTY 90
           C     H A  L+  M   GF PD                                  TY
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTY 60

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+ A+  + K+ EA + L+EM ++G  P +   ++LV  L     + +A+ +V KMI+
Sbjct: 61  TALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIE 120

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF  ++ TFNSL++  CK G V+   ++   +   G+  +V TY  LI  + K+    E
Sbjct: 121 GGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLE 180

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +L  +   G  P    Y+ +I G+ +  + ++A      M   G  P+  VY+ +I 
Sbjct: 181 AKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIH 240

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              + G+ +EA   L EM +   +P    ++ V DGL   GK
Sbjct: 241 AFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGK 282



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 3/222 (1%)

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C++G +  A E L+EM   GF P       ++  + NAG L+ A   +  M   G   ++
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNV 57

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+ +LI    ++ ++E  +++   + + G   ++ TY +L+ A+ K  M+  A  ++  
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++E G  P    +  ++ G  +RG  DDA      M  KG  PN   Y+ LI    +  +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           F+EA   L EM   G+TP +  +  +  GL    K + AE++
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQM 219



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 110/220 (50%), Gaps = 3/220 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLF 60
            KT++ M+    S    T + +I+   K G +  A  + ++   + +    V+ Y++++ 
Sbjct: 252 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVIN 311

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+  +   A  L+ RM + G  PD  TY  +++  C  G++ EA+  LQ M   G  P
Sbjct: 312 GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAP 371

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     L+ GL  A  ++ A++++ +M   G   +L T+N+++  +C SG ++   ++ 
Sbjct: 372 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 431

Query: 181 YSV--CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
             +   +     D +TY+ ++ A+  + ++ EA +LL  +
Sbjct: 432 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 158/312 (50%), Gaps = 1/312 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+LM+      +  T ++II+   + G VD A E+ N   +  C+   + YN++L  LC 
Sbjct: 4   IDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCS 63

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           ++ +  A  L+  M+R+   P++ T  ++VN     G +++   +L++MS  G    V  
Sbjct: 64  IERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVT 123

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ G+   G+++SA ++++ M   G   D+ T+N+L++ +C + + E   E+   + 
Sbjct: 124 YNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMS 183

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +     D  T+  +I  + + G+I +AF +   + E G  P  + Y+ II G+ + G+ +
Sbjct: 184 QNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKME 243

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A    +EM  KG+  ++ +Y +L     +  +  E    + ++ + G++P +  F+ V 
Sbjct: 244 QALELLNEMASKGYNTDK-MYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVL 302

Query: 305 DGLKNCGKHDLA 316
             L   GK D A
Sbjct: 303 LVLCRNGKTDYA 314



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 131/283 (46%), Gaps = 4/283 (1%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
           +E+ +   A  C+  V+ YN ++ A+C       A  L+  +  +G  P+   Y  ++  
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
            CS  +  +A+E L EM  +   P     +++V  L   G L+   + + KM K G   +
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTAN 120

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           + T+N++I  +C+ G V+  +E+  ++   G   D+ TY  L+  +  A   ++A  L+ 
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + ++   P    +  II  + ++G    AF  F +M  KG  PN   Y+ +I    + G
Sbjct: 181 KMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAG 240

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +  +A   L EM   G     + + L+T+ L    K D  E++
Sbjct: 241 KMEQALELLNEMASKGYN-TDKMYQLLTESL---NKEDKIEEV 279



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 123/263 (46%), Gaps = 1/263 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+++I+    + GL+        K +   C   V+ YN+++  +CE      A  L+  M
Sbjct: 88  TVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNM 147

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L+   CS+ +  +A+E + +MS     P     + ++  L   G +
Sbjct: 148 QSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLI 207

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M ++G   +  T++++I  + K+G++E  +E+   +   G   D   Y++L
Sbjct: 208 LQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTD-KMYQLL 266

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             +++K   I+E  +++H L + G  P   L+  ++  + R G+ D A    ++M   G 
Sbjct: 267 TESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGC 326

Query: 259 PPNRPVYTMLITMCGRGGRFVEA 281
            P+   Y +LI      G   EA
Sbjct: 327 MPDELTYIILIEGLSYEGYLQEA 349



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 116/248 (46%), Gaps = 34/248 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +  + +  T + +I    + G VD+A+E+ +   +F C+  ++ YN+LL  LC 
Sbjct: 109 LEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCS 168

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A  L+ +M +   +PD  T+  +++  C  G + +A E  ++M +KG NP    
Sbjct: 169 ADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTT 228

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD---------------LET---------- 159
              ++ GL  AG +E A +++N+M  +G+  D               +E           
Sbjct: 229 YSTIIGGLAKAGKMEQALELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQD 288

Query: 160 ---------FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                    FN+++  +C++G+ ++ +++   +   G   D  TY ILI  +S  G + E
Sbjct: 289 SGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQE 348

Query: 211 AFRLLHNL 218
           A  L+  L
Sbjct: 349 ARELVSRL 356



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 1   MWKTIELM-----KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLY 55
           M + +EL+     K YN   + +   L+ E   K   ++  V+V +K          +L+
Sbjct: 242 MEQALELLNEMASKGYN---TDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLF 298

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N++L  LC       A  ++  M+  G +PD+ TY IL+      G ++EA+E +  +  
Sbjct: 299 NTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRLCS 358

Query: 116 KGF--NPPVRGRDLLV 129
           +    N  ++   LL+
Sbjct: 359 RDVLSNSLIKNEALLL 374


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  128 bits (322), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 133/268 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++  LC+ KL + AY     M  +G  PD  TY+ L+  +C +G++  A   L 
Sbjct: 272 VVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLN 331

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM+ K  NP V    +L+  L   G L+ AK ++  M K+G   ++ T+++L++  C  G
Sbjct: 332 EMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVG 391

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV    ++++++ +  +   V +Y I+I  + K   +DEA  LL  ++     P    Y 
Sbjct: 392 EVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYN 451

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+   A     E+  +G P +   YT L+    +     +A    ++M E 
Sbjct: 452 SLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKER 511

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + DGL    +   A+K+
Sbjct: 512 GIQPNKYTYTALIDGLCKGARLKNAQKL 539



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 121/259 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV+ A + + +  +      V+ Y++L+   C      GA++L+  M  K 
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY IL++A C  GK++EA+  L  M+ +G  P V     L+ G    G + +AK
Sbjct: 338 INPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAK 397

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+ + M++      + ++N +I  +CK   V+  + +   +    +  +  TY  LI  +
Sbjct: 398 QIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGL 457

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K+G I  A  L+  L   G       Y  ++ G+ +    D A   F +MK +G  PN+
Sbjct: 458 CKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNK 517

Query: 263 PVYTMLITMCGRGGRFVEA 281
             YT LI    +G R   A
Sbjct: 518 YTYTALIDGLCKGARLKNA 536



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 133/277 (48%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           H +V +AV  FN          ++ +  +L +L ++K F  A +L ++M  KG  PD  T
Sbjct: 110 HDVVHDAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVT 169

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +IL+N +C  G+M  +   L ++   G+ P       L++GL   G ++ +    +K++
Sbjct: 170 LSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVV 229

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            QGF ++  ++ +L+  +CK GE    +++   +       DV  Y  +I  + K  +++
Sbjct: 230 AQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVN 289

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA+     +   G  P    Y+ +I G    GQ   AF   +EM +K   P+   YT+LI
Sbjct: 290 EAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               + G+  EA N L  MT+ G+ P    +  + DG
Sbjct: 350 DALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDG 386



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 118/239 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ +   G V NA ++F+          V  YN ++  LC+ K    A  L+R M
Sbjct: 379 TYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREM 438

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K  VP+  TY  L++  C SG++  A + ++E+  +G    V     L+ GL     L
Sbjct: 439 LHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNL 498

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  KM ++G   +  T+ +LI+ +CK   ++   +++  +   G C DV TY ++
Sbjct: 499 DKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVM 558

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I  + K GM+DEA  +   + ++G  P    +  II+ +F + + D A     EM  KG
Sbjct: 559 IGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 617



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 4/317 (1%)

Query: 7   LMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T  L+ +++     G V  ++   +K  A   Q   + Y +LL  LC+
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 249

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+R +  +   PD   Y  +++  C    + EA +F  EM+ +G  P V  
Sbjct: 250 IGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVIT 309

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G   AG L  A  ++N+M  +    D+ T+  LI+ +CK G+++    +   + 
Sbjct: 310 YSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMT 369

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G+  +V TY  L+      G +  A ++ H +V+    P    Y  +I G+ +    D
Sbjct: 370 KEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVD 429

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM  K   PN   Y  LI    + GR   A + + E+   G       +  + 
Sbjct: 430 EAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLL 489

Query: 305 DGLKNCGKHDLAEKIEL 321
           DGL  C   +L + I L
Sbjct: 490 DGL--CKNQNLDKAIAL 504



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 128/282 (45%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++    T +++I+   K G +  A  +    T    +  V+ Y++L+   C V   H A
Sbjct: 337 NINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNA 396

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M++    P   +Y I++N  C    + EA   L+EM  K   P     + L+ G
Sbjct: 397 KQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDG 456

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G + SA  ++ ++  +G   D+ T+ SL++ +CK+  ++  + ++  + + G+  +
Sbjct: 457 LCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPN 516

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI  + K   +  A +L  +++  G       Y  +I G+ + G  D+A    S
Sbjct: 517 KYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKS 576

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  P+   + ++I          +A   L EM   GL
Sbjct: 577 KMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + +I+   K   + NA ++F       C   V  YN ++  LC+  +
Sbjct: 508 MKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGM 567

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
              A A+  +M   G +PD  T+ I++ +     +  +A++ L EM  KG 
Sbjct: 568 LDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 127/269 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  Y+ L+  LC+      A  L   M  +G VP+  T+  L+N  C +G+     E  Q
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  KG  P V   + L+ GL   G L  AK++V +M ++G   D  T+  LI+  CK G
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG 414

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E  +E+   + K G+  D   +  LI    + G + EA R L  ++E G KP  + Y 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  ++G     F    EM+  GH P    Y +L+    + G+   A   L  M  +
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           G+ P    ++++ +G    G  +  +K++
Sbjct: 535 GVVPDDITYNILLEGHCKHGNREDFDKLQ 563



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 2/318 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            L++ +NL +   +   + +   K  L   A   + +         V  +N L+  LC+ 
Sbjct: 179 RLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKE 238

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A  L   + ++G  P   ++  L+N +C SG + +     + M +    P V   
Sbjct: 239 HKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTY 298

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ GL   G L+ A ++  +M  +G V +  TF +LI   C +G  +  +E+Y  + +
Sbjct: 299 SVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR 358

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  + K G + EA +L+  + + G KP    Y  +I G  + G  + 
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     EM  +G   +   +T LI+   R G+ +EA   L EM E G+ P    + +V  
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 306 GLKNCGKHDLAEKIELLE 323
           G   C K D+    +LL+
Sbjct: 479 GF--CKKGDVKTGFKLLK 494



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 111/267 (41%), Gaps = 37/267 (13%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +++L+NA+  SG   +A +  + +       P      L   L+       A     +++
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G+  D+  FN L+  +CK  ++     ++  + K GL   V ++  LI    K+G +D
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           + FRL   ++E+   P    Y+ +I G+ + GQ DDA   F EM  +G  PN   +T LI
Sbjct: 278 QGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLI 337

Query: 270 T---MCGRG--------------------------------GRFVEAANYLVEMTEMGLT 294
               + GR                                 G   EA   ++EMT+ GL 
Sbjct: 338 NGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLK 397

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P    + ++ DG   C + DL   +E+
Sbjct: 398 PDKFTYTMLIDGC--CKEGDLESALEI 422



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 3/187 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +++A+E+  +      +   + + +L+   C       A   +R M
Sbjct: 402 TYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREM 461

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY ++++ +C  G ++   + L+EM   G  P V   ++L+ GL   G +
Sbjct: 462 LEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQM 521

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  +++ M+  G V D  T+N L+E  CK G  E   ++     + GL  D  +Y  L
Sbjct: 522 KNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNREDFDKLQ---SEKGLVQDYGSYTSL 578

Query: 199 IPAVSKA 205
           I  + K 
Sbjct: 579 IGDLRKT 585



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 35/223 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G  D  +E++ +      +  V+ YN+L+  LC+V     A  L+  M
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 79  IRKGFVPDKRTYAILVNA-----------------------------------WCSSGKM 103
            ++G  PDK TY +L++                                    +C  G++
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQV 451

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            EA+  L+EM + G  P      +++ G    G +++  +++ +M   G V  + T+N L
Sbjct: 452 IEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVL 511

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +  +CK G+++    +  ++  LG+  D  TY IL+    K G
Sbjct: 512 LNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHG 554



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 3/116 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    +     T +++I  F K G V    ++  +         V+ YN LL  L
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C+      A  L+  M+  G VPD  TY IL+   C  G  RE  + LQ  S+KG 
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN-REDFDKLQ--SEKGL 568


>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Brachypodium distachyon]
          Length = 496

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 135/278 (48%), Gaps = 11/278 (3%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L    C VK    A  L+R+M   G  P K TY +++  +  +G+++ A  F  
Sbjct: 204 VVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFL 263

Query: 112 EMSDKGFN-----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +M  +G       P V     ++ GL  AG L+ A+++ ++M K+G    + T+N+LI+ 
Sbjct: 264 QMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQV 323

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           ICK G VE  V ++  + +     +V TY +LI  +   G ID A +L+  +  +G +P 
Sbjct: 324 ICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPV 383

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLIT---MCGRGGRFVEA 281
              Y  +I+  F  G+ D A   F  M  KG    PN+  Y ++I+   +  R      A
Sbjct: 384 VQTYNVLIRYSFEEGEMDKALHLFERMS-KGEECLPNQDTYNIVISAMFVRKRAEDMAIA 442

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A  ++EM E G  P     + V +GL   G   L+  +
Sbjct: 443 ARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLSRDL 480



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 76/148 (51%), Gaps = 1/148 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + II   G  G +D A ++F++ +   C   +  YN+L+  +C+      A  +   MIR
Sbjct: 283 TTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIR 342

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K ++P+  TY +L+   C  GK+  A + ++ M ++G  P V+  ++L++     G ++ 
Sbjct: 343 KDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDK 402

Query: 141 AKQMVNKMIKQGFVL-DLETFNSLIETI 167
           A  +  +M K    L + +T+N +I  +
Sbjct: 403 ALHLFERMSKGEECLPNQDTYNIVISAM 430



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 113/243 (46%), Gaps = 9/243 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-----NCQQCVLLYNSLLFAL 62
           M    ++ +  T ++I++ F + G + +A   F +         NC+  V+ Y +++  L
Sbjct: 230 MAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGL 289

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   A  L   M ++G  P   TY  L+   C  G + +A     +M  K + P V
Sbjct: 290 GVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNV 349

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L++GL + G ++ A +++ +M  +G    ++T+N LI    + GE++  + ++  
Sbjct: 350 VTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFER 409

Query: 183 VCKLGLC-ADVSTYKILIPAV---SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           + K   C  +  TY I+I A+    +A  +  A R++  +VE G+ P   +   ++ G+ 
Sbjct: 410 MSKGEECLPNQDTYNIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLM 469

Query: 239 RRG 241
             G
Sbjct: 470 LTG 472


>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
 gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Cucumis sativus]
          Length = 534

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 135/270 (50%), Gaps = 1/270 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  I+LMK  N+ ++  T S+++  + + GL   AV  FN+   + C   ++ +++++  
Sbjct: 168 WYLIDLMKARNVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISI 227

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+ +    A +    +  K F PD   Y  LV+ WC +G + EA+   +EM   G +P 
Sbjct: 228 LCKKRRAVEAQSFFDNLKHK-FEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPN 286

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +++  L  +G +  A  +  +M+  G   +  TFN+LI    ++G  E  +++Y 
Sbjct: 287 VYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYN 346

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +L   AD+ TY  LI    K   + EA ++L+++ ++   P  S + PI + + +  
Sbjct: 347 QMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQ 406

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             + A   F+ MK  G  PN   Y +L+ M
Sbjct: 407 DVNGAHRMFARMKEVGCKPNTVTYNILMRM 436



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 123/318 (38%), Gaps = 52/318 (16%)

Query: 14  SVSPQTLSLIIEEFG--KHGL-VDNAVEVFNKCTAFNC-QQCVLLYNSLLFALCEVKLFH 69
           SVSP  +  +IE+ G  +HG+    A+  FN  TA    +     YN ++    +VK F 
Sbjct: 106 SVSPAVVRYVIEKSGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFG 165

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A+ LI  M         R   I V  +                             +LV
Sbjct: 166 LAWYLIDLM-------KARNVEITVVTF----------------------------SMLV 190

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYYSVCKLGL 188
           +  + AG    A    N+M   G   D+  F+++I  +CK    VE   + ++   K   
Sbjct: 191 RRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVE--AQSFFDNLKHKF 248

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV  Y  L+    +AG I EA  +   +   G  P    Y+ +I  + R GQ   A  
Sbjct: 249 EPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHD 308

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC-FDLVTDGL 307
            F+EM   G  PN   +  LI +  R GR  +      +M  +      RC  DL+T   
Sbjct: 309 VFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRL------RCAADLITYNF 362

Query: 308 ---KNCGKHDLAEKIELL 322
               +C   +L E I++L
Sbjct: 363 LIETHCKDDNLGEAIKVL 380



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 1/153 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M   + + +  + + I     K   V+ A  +F +     C+   + YN L+   
Sbjct: 378 KVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMF 437

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPP 121
              K     + L + M  +   P+  TY  L+  +C  G    A  F +EM D K   P 
Sbjct: 438 AVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKCIKPS 497

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +    ++++ L  AG L+  +++V+KM+++GF 
Sbjct: 498 MPLYKMVLEELRKAGQLKKHEELVDKMVERGFA 530



 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 38/208 (18%), Positives = 81/208 (38%), Gaps = 7/208 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    + G  +  ++V+N+     C   ++ YN L+   C+      A  ++  M
Sbjct: 324 TFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETHCKDDNLGEAIKVLNSM 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    P+  ++  +      S  +  A      M + G  P     ++L++        
Sbjct: 384 AKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNTVTYNILMRMFAVPKSA 443

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYYSVCKLGLCADVST 194
           +   ++  +M ++    +  T+  LI   C  G       F  EM    C   +   +  
Sbjct: 444 DMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGHWNHAYMFFREMIDEKC---IKPSMPL 500

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           YK+++  + KAG + +   L+  +VE G
Sbjct: 501 YKMVLEELRKAGQLKKHEELVDKMVERG 528


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 145/306 (47%), Gaps = 2/306 (0%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + ++VSP   + +I+ FGK G+V+  + V+ K      +  +  YN L+  L        
Sbjct: 183 FPMTVSPG--NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDS 240

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +   M      PD  TY  ++  +C +G+ ++A E L+ M  KG          ++Q
Sbjct: 241 AERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQ 300

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                    S   +  +M ++G  +    F+ +I  +CK G++     ++ ++ + G   
Sbjct: 301 ACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKP 360

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V+ Y +LI   +K G +++A RLLH ++++G  P    Y+ ++ G+ + G+ ++A  +F
Sbjct: 361 NVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYF 420

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
              +  G   N   Y+ LI   G+ GR  EA     EM+E G T  S C++ + D     
Sbjct: 421 QTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 311 GKHDLA 316
           GK D A
Sbjct: 481 GKVDEA 486



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 145/319 (45%), Gaps = 3/319 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E+M+   +     T + +I+ + K G    A+E          +   + Y +++ A 
Sbjct: 243 RVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQAC 302

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                F    AL + M  KG       +++++   C  GK+ E     + M  KG  P V
Sbjct: 303 YADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNV 362

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +E A +++++MI +GF  D+ T++ ++  +CK+G VE  ++ Y+ 
Sbjct: 363 AIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMD-YFQ 421

Query: 183 VCKL-GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            C+  GL  +   Y  LI  + KAG +DEA RL   + E G       Y  +I    + G
Sbjct: 422 TCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHG 481

Query: 242 QFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + D+A   F  M + +G       YT+LI+   +  R  EA      M + G+TP + C 
Sbjct: 482 KVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACL 541

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             ++ GL   GK   A KI
Sbjct: 542 RALSTGLCLSGKVARACKI 560



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 141/313 (45%), Gaps = 2/313 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L V P   SL+I    K G ++    VF        +  V +Y  L+    +   
Sbjct: 318 MDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGS 377

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ RMI +GF PD  TY+++VN  C +G++ EA ++ Q     G          
Sbjct: 378 VEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSS 437

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG ++ A+++  +M ++G   D   +N+LI+   K G+V+  + ++  + +  
Sbjct: 438 LIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEE 497

Query: 188 LCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            C   V TY ILI  + K    +EA +L   +++ G  P  +    +  G+   G+   A
Sbjct: 498 GCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARA 557

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                E+   G   +     M+ T+C + GR  EA      +TE G     R   ++ + 
Sbjct: 558 CKILDELAPMGVILDAACEDMINTLC-KAGRIKEACKLADGITERGREVPGRIRTVMINA 616

Query: 307 LKNCGKHDLAEKI 319
           L+  GK DLA K+
Sbjct: 617 LRKVGKADLAMKL 629



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           NSL+ +  ++ +      + R+M   G  P   TY  L+N   S+  +  A+   + M  
Sbjct: 191 NSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMES 250

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
               P V   + +++G   AG  + A + +  M  +G   D  T+ ++I+      +   
Sbjct: 251 GRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSS 310

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           CV +Y  + + GL      + ++I  + K G ++E + +  N++  G KP  ++Y  +I 
Sbjct: 311 CVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 370

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  + G  +DA      M  +G  P+   Y++++    + GR  EA +Y       GL  
Sbjct: 371 GYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAI 430

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
            S  +  + DGL   G+ D AE++
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERL 454



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+++    S +I+  GK G VD A  +F + +   C +    YN+L+ A  +      A 
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAL 487

Query: 73  ALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL +RM  + G      TY IL++      +  EA +    M DKG  P       L  G
Sbjct: 488 ALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTG 547

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A ++++++   G +LD      +I T+CK+G ++   ++   + + G    
Sbjct: 548 LCLSGKVARACKILDELAPMGVILDAAC-EDMINTLCKAGRIKEACKLADGITERGREVP 606

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
                ++I A+ K G  D A +L+H+ +  G++   S+
Sbjct: 607 GRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSV 644



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 85/200 (42%), Gaps = 2/200 (1%)

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L  A  ++  + + +++ K  F + +   NSLI++  K G VE  + ++  + + G
Sbjct: 158 LVDVLALAKDVDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENG 217

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY  L+  +  A  +D A R+   +     KP    Y  +IKG  + GQ   A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKAL 277

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M+ KG   ++  Y  +I  C     F        EM E GL      F LV  GL
Sbjct: 278 EKLRVMETKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGL 337

Query: 308 KNCGKHDLAEKIELLEVSLR 327
             C +  L E   + E  +R
Sbjct: 338 --CKEGKLNEGYAVFENMIR 355


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A  +F +  +  C   V+ Y +L+ A  + K 
Sbjct: 314 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------SDKGFNPP 121
              A  +  RM+  G  P+  TY  LV+  C +G + +A E   ++      +D  F  P
Sbjct: 374 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 433

Query: 122 VRGRDLL----------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              R  L          V GL  A  ++ A ++++ M+  G   +   +++LI+  CK+G
Sbjct: 434 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAG 493

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI  + K G +D A ++L  +++D   P    Y 
Sbjct: 494 KIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 553

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R G+ + A    S M+ KG  PN   YT LI   G+ G+   + +   +M+  
Sbjct: 554 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 613

Query: 292 GLTP 295
           G +P
Sbjct: 614 GCSP 617



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           E+     L+D A +++ +  A NC    +   +    LC V  F  A+ LI+ M+RKGFV
Sbjct: 226 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV 285

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY+ ++   C + K+ +A    QEM   G  P V    +L+     AG +E A+ +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M   G    + T+ +LI    K+ +V    ++++ +   G   +  TY  L+  + K
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 205 AGMIDEAFRLLHNLV--------------EDGHKPFPSL--YAPIIKGMFRRGQFDDAFC 248
           AG I +AF +   L+              ED H   P++  Y  ++ G+ +  + D A  
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN  VY  LI    + G+   A    ++MT+ G  P    +  + D + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 526 KDGRLDLAMKV 536



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 51/370 (13%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+    S +  T + +I  + K   V  A ++F++     C+   + Y +L+  LC+ 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 66  KLFHGAYALIRRMI----------------RKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
                A+ +  ++I                R    P+  TY  LV+  C + K+  A E 
Sbjct: 407 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHEL 466

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L  M   G  P     D L+ G   AG ++SA+++  +M K G++  + T+ SLI+ + K
Sbjct: 467 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 526

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G ++  +++   + K     +V TY  +I  + + G  ++A +LL  + E G  P    
Sbjct: 527 DGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 586

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRG------------- 275
           Y  +I G+ + G+ D +   F++M  KG  PN   Y +LI  +C  G             
Sbjct: 587 YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646

Query: 276 -------------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                                F+ +   L EM   G  PI+  + ++ D     G+ ++A
Sbjct: 647 QTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIA 706

Query: 317 EKI--ELLEV 324
            ++  E++EV
Sbjct: 707 MELHKEMMEV 716



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 22/341 (6%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I +M     + +P   + ++  +        A ++ N+ T   C    ++YN  + ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 63  C------EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           C         L   A  +   M+    V +K   A      C  GK  +A + ++EM  K
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P       ++  L +A  +E A  +  +M   G   D+ T+  LI++ CK+G +E  
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +  +G    V TY  LI A  KA  + +A  + H +V+ G +P    Y  ++ G
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 237 MFRRGQFDDAFCFFSEMKIKGH----------------PPNRPVYTMLITMCGRGGRFVE 280
           + + G    AF  ++++                      PN   Y  L+    +  +   
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           A   L  M   G  P    +D + DG    GK D A+++ L
Sbjct: 463 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 503



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+   K G +D A++V ++    +C   V+ Y +++  LC +     A  L+
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY  L++    +GK+  + +   +MS KG +P      +L+  L  A
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS--GEVEFCVEMYYSVCKLGLCADVS 193
           G L+ A+ ++ +M +  +   L+ +   I+   KS    +    EM       G      
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME----SYGTVPIAP 688

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVE--DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            Y +LI   SKAG ++ A  L   ++E     K    +YA +I+ +    Q ++AF  +S
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 748

Query: 252 EMKIKGHPPNRPVYTMLI 269
           EM  +G  P   V+  LI
Sbjct: 749 EMTRRGFVPELSVFVCLI 766



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + LM+    S +  T + +I+  GK G +D ++++F + +   C    + Y  L+  L
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-- 120
           C   L   A  L+  M +  +    + Y   +  +  S     +   L+EM   G  P  
Sbjct: 630 CAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIA 687

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK--QGFVLDLETFNSLIETICKSGEVEFCVE 178
           PV G  +L+     AG LE A ++  +M++       D + + SLI+ +C + +VE    
Sbjct: 688 PVYG--MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 745

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +Y  + + G   ++S +  LI  + +    DEA +L + +  +G
Sbjct: 746 LYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 789



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 105/314 (33%), Gaps = 73/314 (23%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK------------ 102
           YN+L+  L         + + + M   GF  D+ T     +A C  G+            
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIERED 102

Query: 103 --------------------MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                                 EA  FL  M      P V     L+ G L    L   K
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++N M+ +G   +   FNSL+ + C   +  +  ++   +   G       Y I I ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 203 -----------------------------------------SKAGMIDEAFRLLHNLVED 221
                                                       G  D+AF+L+  ++  
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P  S Y+ +I  +    + + AF  F EMK+ G  P+   YT+LI    + G   +A
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 282 ANYLVEMTEMGLTP 295
                EM  +G +P
Sbjct: 343 QWLFEEMRSVGCSP 356



 Score = 38.9 bits (89), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFAL 62
           +E M+ Y          ++I+ F K G ++ A+E+  +      + +    +Y SL+ AL
Sbjct: 675 LEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQAL 734

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           C       A+ L   M R+GFVP+   +  L+       K  EA +    +  +G N
Sbjct: 735 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 791


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A  +F +  +  C   V+ Y +L+ A  + K 
Sbjct: 249 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 308

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------SDKGFNPP 121
              A  +  RM+  G  P+  TY  LV+  C +G + +A E   ++      +D  F  P
Sbjct: 309 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 368

Query: 122 VRGRDLL----------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              R  L          V GL  A  ++ A ++++ M+  G   +   +++LI+  CK+G
Sbjct: 369 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAG 428

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI  + K G +D A ++L  +++D   P    Y 
Sbjct: 429 KIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 488

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R G+ + A    S M+ KG  PN   YT LI   G+ G+   + +   +M+  
Sbjct: 489 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 548

Query: 292 GLTP 295
           G +P
Sbjct: 549 GCSP 552



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           E+     L+D A +++ +  A NC    +   +    LC V  F  A+ LI+ M+RKGFV
Sbjct: 161 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV 220

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY+ ++   C + K+ +A    QEM   G  P V    +L+     AG +E A+ +
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M   G    + T+ +LI    K+ +V    ++++ +   G   +  TY  L+  + K
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 340

Query: 205 AGMIDEAFRLLHNLV--------------EDGHKPFPSL--YAPIIKGMFRRGQFDDAFC 248
           AG I +AF +   L+              ED H   P++  Y  ++ G+ +  + D A  
Sbjct: 341 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 400

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN  VY  LI    + G+   A    ++MT+ G  P    +  + D + 
Sbjct: 401 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 460

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 461 KDGRLDLAMKV 471



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 51/370 (13%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+    S +  T + +I  + K   V  A ++F++     C+   + Y +L+  LC+ 
Sbjct: 282 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 341

Query: 66  KLFHGAYALIRRMI----------------RKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
                A+ +  ++I                R    P+  TY  LV+  C + K+  A E 
Sbjct: 342 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHEL 401

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L  M   G  P     D L+ G   AG ++SA+++  +M K G++  + T+ SLI+ + K
Sbjct: 402 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 461

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G ++  +++   + K     +V TY  +I  + + G  ++A +LL  + E G  P    
Sbjct: 462 DGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 521

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRG------------- 275
           Y  +I G+ + G+ D +   F++M  KG  PN   Y +LI  +C  G             
Sbjct: 522 YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 581

Query: 276 -------------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                                F+ +   L EM   G  PI+  + ++ D     G+ ++A
Sbjct: 582 QTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIA 641

Query: 317 EKI--ELLEV 324
            ++  E++EV
Sbjct: 642 MELHKEMMEV 651



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 22/341 (6%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I +M     + +P   + ++  +        A ++ N+ T   C    ++YN  + ++
Sbjct: 98  RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 157

Query: 63  C------EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           C         L   A  +   M+    V +K   A      C  GK  +A + ++EM  K
Sbjct: 158 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 217

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P       ++  L +A  +E A  +  +M   G   D+ T+  LI++ CK+G +E  
Sbjct: 218 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 277

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +  +G    V TY  LI A  KA  + +A  + H +V+ G +P    Y  ++ G
Sbjct: 278 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 337

Query: 237 MFRRGQFDDAFCFFSEMKIKGH----------------PPNRPVYTMLITMCGRGGRFVE 280
           + + G    AF  ++++                      PN   Y  L+    +  +   
Sbjct: 338 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 397

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           A   L  M   G  P    +D + DG    GK D A+++ L
Sbjct: 398 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 438



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+   K G +D A++V ++    +C   V+ Y +++  LC +     A  L+
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY  L++    +GK+  + +   +MS KG +P      +L+  L  A
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 567

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS--GEVEFCVEMYYSVCKLGLCADVS 193
           G L+ A+ ++ +M +  +   L+ +   I+   KS    +    EM       G      
Sbjct: 568 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME----SYGTVPIAP 623

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVE--DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            Y +LI   SKAG ++ A  L   ++E     K    +YA +I+ +    Q ++AF  +S
Sbjct: 624 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 683

Query: 252 EMKIKGHPPNRPVYTMLI 269
           EM  +G  P   V+  LI
Sbjct: 684 EMTRRGFVPELSVFVCLI 701



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 6/250 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            +L   ++  L E   F  A + + RM     +P+  TY  L++ +    ++   +  + 
Sbjct: 42  TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 101

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G NP     + LV    N      A +++N+M   G       +N  I +IC   
Sbjct: 102 MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 161

Query: 172 EVEF--CVEMYYSVCKLGLCADVSTYKILIPAVSK----AGMIDEAFRLLHNLVEDGHKP 225
           ++     +++   +    L A+    K+ +   ++     G  D+AF+L+  ++  G  P
Sbjct: 162 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 221

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
             S Y+ +I  +    + + AF  F EMK+ G  P+   YT+LI    + G   +A    
Sbjct: 222 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 281

Query: 286 VEMTEMGLTP 295
            EM  +G +P
Sbjct: 282 EEMRSVGCSP 291



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 102/224 (45%), Gaps = 8/224 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + LM+    S +  T + +I+  GK G +D ++++F + +   C    + Y  L+  L
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 564

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-- 120
           C   L   A  L+  M +  +    + Y   +  +  S     +   L+EM   G  P  
Sbjct: 565 CAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIA 622

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK--QGFVLDLETFNSLIETICKSGEVEFCVE 178
           PV G  +L+     AG LE A ++  +M++       D + + SLI+ +C + +VE    
Sbjct: 623 PVYG--MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 680

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +Y  + + G   ++S +  LI  + +    DEA +L + +  +G
Sbjct: 681 LYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEG 724



 Score = 38.9 bits (89), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFAL 62
           +E M+ Y          ++I+ F K G ++ A+E+  +      + +    +Y SL+ AL
Sbjct: 610 LEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQAL 669

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           C       A+ L   M R+GFVP+   +  L+       K  EA +    +  +G N
Sbjct: 670 CLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 726


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 142/334 (42%), Gaps = 35/334 (10%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++   T + I++   K+  +  AV +  K TA  C   +  YN+LL  LC++     A  
Sbjct: 31  TIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 90

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+R+++  G  PD  TY  L++      +  EA +  +EM+ +G          L++GLL
Sbjct: 91  LLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 150

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV--------------EM 179
            AG +  A  +   M  QG V D+ T +++I+ +CK+G +   V              E+
Sbjct: 151 QAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEV 210

Query: 180 YYSVCKLGLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            YS    GLC                      D  TY ILI  + K+G +  A      +
Sbjct: 211 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEM 270

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G KP    Y  +I G  + G  D A   F +M      PN   Y  LI+   +  + 
Sbjct: 271 LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQL 330

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            +A+ Y   M E G  P S  +  + DGL   GK
Sbjct: 331 TKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K G++  A  +  + T   C   +  Y +++  L + K    A AL+ ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY  L+N  C  G++ EA + L+++ D G  P V     L+ GL      
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G  LD   + +LI  + ++G++     +Y ++   G   DV T   +
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG I  A R+  ++   G  P   +Y+ +I G+ +  + D A    ++MK    
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y +LI    + G    A  +  EM E G  P    ++++  G    G  D A
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 298



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 124/275 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+  GK      A ++F +  +       + Y +L+  L +      A ++ + M
Sbjct: 106 TYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTM 165

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G VPD  T + +++  C +G++  A    + M  +G  P       L+ GL  A  +
Sbjct: 166 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 225

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M+ +M K     D  T+N LI+ +CKSG+V      +  + + G   DV TY IL
Sbjct: 226 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNIL 285

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KAG  D A  +  ++      P    Y  +I G+ +R Q   A  ++  MK +G 
Sbjct: 286 ISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGC 345

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           PP+  VY+ L+    + G+         EM   G+
Sbjct: 346 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 380



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 142/318 (44%), Gaps = 2/318 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    L++     + +I    + G +  A  V+   T+  C   V+  ++++  
Sbjct: 124 YKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 183

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + M  +G  P++  Y+ L++  C + KM  A E L +M      P 
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++L+ GL  +G + +A+   ++M++ G   D+ T+N LI   CK+G  +    ++ 
Sbjct: 244 TITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 303

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       +V TY  LI  + K   + +A     ++ E G  P   +Y+ ++ G+ + G
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +     F EM+  G   ++    ++  +C +  R  EA +    + + G+ P    ++
Sbjct: 364 KLEGGCMLFDEMERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRKEGM-PHPYAYN 421

Query: 302 LVTDGLKNCGKHDLAEKI 319
            +   L   GK +  + +
Sbjct: 422 SIISALIKSGKVNEGQAV 439



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 94/193 (48%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+ GL+ AG L  A  +  +    G  +D+ T+ ++++ + K+ +++  V +   +   
Sbjct: 4   ILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITAN 63

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G    ++TY  L+  + K G ++EA  LL  +V++G  P    Y  +I G+ ++ +  +A
Sbjct: 64  GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEA 123

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +  F EM  +G   +   YT LI    + G+  +A++    MT  G  P       + DG
Sbjct: 124 YKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 183

Query: 307 LKNCGKHDLAEKI 319
           L   G+   A +I
Sbjct: 184 LCKAGRIGAAVRI 196


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 127/268 (47%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
           +  C   +  YN+L+  LC+      A  L+  M  KG  P+  TY IL++ +C  G++ 
Sbjct: 7   SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 66

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA+  L EMS KG      G + L+  L     ++ A  M   M  +G   D+ TFNSLI
Sbjct: 67  EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 126

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +CK  + E  + +Y  +   G+ A+  TY  LI A  + G + EA +L+++++  G  
Sbjct: 127 FGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCP 186

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
                Y  +IK + R G  +     F +M  KG  PN     +LI    R G    A  +
Sbjct: 187 LDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEF 246

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           L +M   GLTP    ++ + +GL   G+
Sbjct: 247 LRDMIHRGLTPDIVTYNSLINGLCKTGR 274



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G ++ A  V ++ +        + YN L+ ALC+ +    A  +   M
Sbjct: 51  TYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDM 110

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+  L+   C   K  EA    Q+M  +G        + L+   L  G +
Sbjct: 111 SSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAM 170

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++VN M+ +G  LD  T+N LI+ +C++G +E  + ++  +   GL  +  +  IL
Sbjct: 171 QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNIL 230

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G I  A   L +++  G  P    Y  +I G+ + G+  +A   F +++++G 
Sbjct: 231 INGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 290

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y  LI+   + G F +A   L    + G  P
Sbjct: 291 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIP 327



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 125/268 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
             ++ M    L+++    + +I    K   V +A+ +F   ++  C+  +  +NSL+F L
Sbjct: 70  NVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGL 129

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V  F  A  L + M+ +G + +  TY  L++A+   G M+EA + + +M  +G     
Sbjct: 130 CKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDD 189

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++ L  AG +E    +   M+ +G   +  + N LI  +C++G ++  +E    
Sbjct: 190 ITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRD 249

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D+ TY  LI  + K G   EA  L   L  +G  P    Y  +I    + G 
Sbjct: 250 MIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGM 309

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           FDDA    S     G  PN   + +L++
Sbjct: 310 FDDAHLLLSRGVDSGFIPNEVTWYILVS 337



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%)

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           + M   G  P +   + L+ GL   GYL SA++++N+M  +G   ++ T+  LI+  CK 
Sbjct: 3   ESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKE 62

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G +E    +   +   GL  +   Y  LI A+ K   + +A  +  ++   G KP    +
Sbjct: 63  GRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTF 122

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
             +I G+ +  +F++A   + +M ++G   N   Y  LI    R G   EA   + +M
Sbjct: 123 NSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDM 180



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 55/120 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N L+  LC       A   +R MI +G  PD  TY  L+N  C +G+ +EA     ++  
Sbjct: 228 NILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQV 287

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P     + L+      G  + A  ++++ +  GF+ +  T+  L+    K G+ EF
Sbjct: 288 EGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQEF 347



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 63/145 (43%)

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           M   M+  G   D+ T+N+LI  +CK G +    E+   +   G   +V TY ILI    
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G ++EA  +L  +   G       Y  +I  + +  +  DA   F +M  KG  P+  
Sbjct: 61  KEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIF 120

Query: 264 VYTMLITMCGRGGRFVEAANYLVEM 288
            +  LI    +  +F EA     +M
Sbjct: 121 TFNSLIFGLCKVNKFEEALGLYQDM 145


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 1/278 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + G V+   E+FN   +F C   V+ YN+L+  LC+      A  L++ +
Sbjct: 200 TFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEV 259

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
             R    PD  TY  +++ +   GK+  A    +EM   G  P V   ++L+ G    G 
Sbjct: 260 QSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGN 319

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + +A+ M  KM     + D+ TF SLI+  C++G++   ++++  +    +  ++ TY +
Sbjct: 320 MVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSV 379

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ K   I EA  LL  L      P P +Y P+I G  + G  D+A    +EM+ K 
Sbjct: 380 IINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKR 439

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P++  +T+LI      GR VEA +   +M  +G  P
Sbjct: 440 CRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAP 477



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 114/275 (41%), Gaps = 1/275 (0%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
           F+   C   Y  L+ +LC++ L      +I  M   G + D R    LV ++  +GK   
Sbjct: 87  FSLIHCFSTYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDL 146

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A++ + E+  +         + L+  L+  G +  A  +  + +      +  TFN LI 
Sbjct: 147 AKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIR 206

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHK 224
            +C+ GEVE   E++ ++   G   DV TY  LI  + KA  +D A  LL  +   +   
Sbjct: 207 GLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCS 266

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  II G  + G+ + A   F EM   G  P    + +LI   G+ G  V A   
Sbjct: 267 PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAM 326

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             +M      P    F  + DG    G   L  K+
Sbjct: 327 HEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKV 361



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 99/211 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ FGK G +  A  +  K  +++C   V+ + SL+   C          +   M
Sbjct: 306 TFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVM 365

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TY++++NA C   ++ EA++ L+++      P     + ++ G   AG +
Sbjct: 366 KARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNV 425

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +V +M ++    D  TF  LI   C  G +   ++++  +  +G   D  T   L
Sbjct: 426 DEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSL 485

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           +  + KAG   EAF ++    ED +  F SL
Sbjct: 486 VACLLKAGKPSEAFHIVQTASEDLNLSFSSL 516



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M  Y+      T + +I+ + + G +   ++V++   A N    +  Y+ ++ ALC+ 
Sbjct: 328 EKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKD 387

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              H A  L+R++      P    Y  +++ +C +G + EA   + EM +K   P     
Sbjct: 388 NRIHEARDLLRQLKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTF 447

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            +L+ G    G +  A  +  KM+  G   D  T +SL+  + K+G+
Sbjct: 448 TILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGK 494



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  ++MK  N+S +  T S+II    K   +  A ++  +    +      +YN ++   
Sbjct: 360 KVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGF 419

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  ++  M  K   PDK T+ IL+   C  G+M EA +  ++M   G  P  
Sbjct: 420 CKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDN 479

Query: 123 RGRDLLVQGLLNAGYLESAKQMV 145
                LV  LL AG    A  +V
Sbjct: 480 ITISSLVACLLKAGKPSEAFHIV 502



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 5/174 (2%)

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYKILIPAVSKAGMIDEAFRLL 215
             T+  LI ++C+ G  +  VEM     +  G   D      L+ + ++AG  D A +L+
Sbjct: 93  FSTYELLIRSLCQMGLHDL-VEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLI 151

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +  +  +    +Y  ++  + + G+  +A   F E      PPN   + +LI    R 
Sbjct: 152 IEVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRV 211

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRS 328
           G   +       M   G  P    ++ +  GL  C  ++L    +LL EV  R+
Sbjct: 212 GEVEKGFELFNAMQSFGCLPDVVTYNTLISGL--CKANELDRACDLLKEVQSRN 263


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G +D A+    K  ++ CQ  V+ +N +L +LC    +  A  L+  M
Sbjct: 243 TYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATM 302

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C  G + +A   L+ M   G  P  R  + L+QG  N   +
Sbjct: 303 LRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGI 362

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+ +G   D+ T+N L+  +CK G+V+  V +   +   G    + +Y  +
Sbjct: 363 DRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTV 422

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G  + A  LL  +   G KP       ++ G+ R G+  +A  FF  +K  G 
Sbjct: 423 IDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGI 482

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y  ++    +  +   A ++LV+M   G  P    +  +  G+   G  + A K
Sbjct: 483 KPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASK 542

Query: 319 I 319
           +
Sbjct: 543 L 543



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 148/309 (47%), Gaps = 5/309 (1%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +   + +++I  + K G ++ A+ V +  +          Y+++L +LC+      A  +
Sbjct: 137 IDANSYNVLINAYCKSGEIEEALRVLDHTSV---APNAATYDAVLCSLCDRGKLKQAMQV 193

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           + R ++    PD  T  +L++A C    + +A +   EM  KG  P V   ++L++G   
Sbjct: 194 LDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCK 253

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G L+ A   + K+   G   D+ + N ++ ++C  G     +++  ++ + G    V T
Sbjct: 254 EGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVT 313

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           + ILI  + + G++ +A  +L  + + GH P    + P+I+G   R   D A      M 
Sbjct: 314 FNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMV 373

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  P+   Y +L+T   + G+  +A   L +++  G +P    ++ V DGL   GK +
Sbjct: 374 SRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAE 433

Query: 315 LAEKIELLE 323
           LA  +ELLE
Sbjct: 434 LA--VELLE 440



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K   V  A+++FN+     C+  V+ YN L+   C+      A   ++++
Sbjct: 208 TCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKL 267

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D  ++ +++ + CS G+  +A + L  M  KG  P V   ++L+  L   G L
Sbjct: 268 PSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLL 327

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M K G   +  +FN LI+  C    ++  +E    +   G   D+ TY IL
Sbjct: 328 GKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNIL 387

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G +D+A  +L  L   G  P    Y  +I G+ + G+ + A     EM  KG 
Sbjct: 388 LTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 447

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+    T ++    R G+  EA  +   +   G+ P +  ++ +  GL    +  LA
Sbjct: 448 KPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLA 505



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 5/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+   +L+   C++     A  ++  +   G V D  +Y +L+NA+C SG++ EA   L 
Sbjct: 104 VVACTALIREFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLD 163

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
             S     P     D ++  L + G L+ A Q++++ ++     D+ T   LI+  CK  
Sbjct: 164 HTS---VAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKES 220

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   ++++  +   G   DV TY +LI    K G +DEA   L  L   G +     + 
Sbjct: 221 GVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHN 280

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I++ +   G++ DA    + M  KG  P+   + +LI    + G   +A N L  M + 
Sbjct: 281 MILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKH 340

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G TP SR F+ +  G   C +  +   IE LE+
Sbjct: 341 GHTPNSRSFNPLIQGF--CNRKGIDRAIEHLEI 371



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 112/257 (43%), Gaps = 34/257 (13%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +G++ E   FL+ M++KG  P V     L++     G  ++A +++  + + G V+D  +
Sbjct: 82  NGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVIDANS 141

Query: 160 FNSLIETICKSGEVEFCVEMY-----------YSVCKLGLC------------------- 189
           +N LI   CKSGE+E  + +            Y      LC                   
Sbjct: 142 YNVLINAYCKSGEIEEALRVLDHTSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSK 201

Query: 190 --ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV T  +LI A  K   + +A +L + +   G KP    Y  +IKG  + G+ D+A 
Sbjct: 202 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAI 261

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            F  ++   G   +   + M++     GGR+++A   L  M   G  P    F+++ + L
Sbjct: 262 IFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFL 321

Query: 308 KNCGKHDLAEKIELLEV 324
             C K  L + + +LE+
Sbjct: 322 --CQKGLLGKALNVLEM 336



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 8/222 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+M  +  + + ++ + +I+ F     +D A+E      +  C   ++ YN LL ALC+
Sbjct: 334 LEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCK 393

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++ ++  KG  P   +Y  +++     GK   A E L+EM  KG  P +  
Sbjct: 394 DGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLIT 453

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFCVEMY 180
              +V GL   G +  A +  + +   G   +   +NS++  +CK+ +    ++F V+M 
Sbjct: 454 CTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMV 513

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            + CK       ++Y  LI  ++  G+ +EA +L + L   G
Sbjct: 514 ANGCK----PTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 79/197 (40%), Gaps = 40/197 (20%)

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+  G LE   + +  M  +G + D+    +LI   CK G  +    +   + + G   D
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 192 VSTYKILIPAVSKAGMIDEAFRLL-HNLVEDGHKPFPSLYAPIIKGMFRRGQFD------ 244
            ++Y +LI A  K+G I+EA R+L H  V     P  + Y  ++  +  RG+        
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHTSVA----PNAATYDAVLCSLCDRGKLKQAMQVL 194

Query: 245 -------------------DAFC----------FFSEMKIKGHPPNRPVYTMLITMCGRG 275
                              DA C           F+EM+ KG  P+   Y +LI    + 
Sbjct: 195 DRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKE 254

Query: 276 GRFVEAANYLVEMTEMG 292
           GR  EA  +L ++   G
Sbjct: 255 GRLDEAIIFLKKLPSYG 271


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  127 bits (320), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 127/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ FGK G    A+EVF       C    ++YN L+  L +      A  L+  M
Sbjct: 337 TYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 396

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG +PD RTY I+++   S G+  +A  F   M  +  +P V   + L+ GL      
Sbjct: 397 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 456

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M     + DL TF +LI+T+ K+G +E  +E    + K+G   +   Y  L
Sbjct: 457 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNAL 516

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    ++G +D+ + L  +++E    P    Y  ++ G  RRG    A     EM  +GH
Sbjct: 517 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 576

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P    Y +LI      G+  +A     EM   G  P
Sbjct: 577 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNP 613



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 1/282 (0%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A+ VF +      +  V + N+L+   C + +   A  L+  M       D  TY ILV
Sbjct: 179 DALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILV 238

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           NA C +G+M E   F++     G        + ++QG +  G L  A Q+    + +  V
Sbjct: 239 NAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV 298

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+N LI  +CKS ++E  + ++    + G+  DV TY  L+ A  KAG   +A  +
Sbjct: 299 PDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
            +N+ + G  P   +Y  +I  + ++G+ D+A     +M  KG  P+   Y ++I +   
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS 417

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            GR+ +A ++   M     +P    ++ + +GLK   + D A
Sbjct: 418 CGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEA 459



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 36/343 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +EL +    ++S    + II+ F + G +  A ++F           V  YN LL ALC+
Sbjct: 254 MELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYN-LLIALCK 312

Query: 65  VKLFHGAYALIRR-----------------------------------MIRKGFVPDKRT 89
            K    A  L +                                    M + G +PD   
Sbjct: 313 SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVV 372

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +L++     GK+ EA E L++M+ KG  P  R  ++++  L + G  E A      M 
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 432

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++    D+ T+N+L+  + K    +   +++  +       D++T+  LI  ++KAG ++
Sbjct: 433 RRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRME 492

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A      LV+ GH P   +Y  +I G  R GQ D  +  F +M      P+   YT+L+
Sbjct: 493 DALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILV 552

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
               R G    A   L EM   G TP    ++++   L   G+
Sbjct: 553 LGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQ 595



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 1/267 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C    + YN ++           A  L    + K  VPD  TY +L+ A C S ++ EA 
Sbjct: 262 CALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLI-ALCKSKQLEEAL 320

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              QE    G    V     L+     AG    A ++   M K G + D   +N LI  +
Sbjct: 321 TLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCL 380

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G+V+  +E+   + + G+  D  TY I+I  +S  G  ++A+     +    H P  
Sbjct: 381 GKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDV 440

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++ G+ +  + D+A   F EM+     P+   +  LI    + GR  +A      
Sbjct: 441 VTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSAR 500

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHD 314
           + +MG  P S  ++ +  G    G+ D
Sbjct: 501 LVKMGHAPNSYIYNALISGFCRSGQVD 527



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +MK    S    T + ++    K    D A ++F++  A  C   +  + +L+  L +  
Sbjct: 430 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAG 489

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A     R+++ G  P+   Y  L++ +C SG++ +  E  Q+M +    P      
Sbjct: 490 RMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYT 549

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +LV G    G+   A +++ +M+++G    L T+N LI ++  +G+VE    ++  +   
Sbjct: 550 ILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 609

Query: 187 GLCADVSTYKIL 198
           G   D+ TY  L
Sbjct: 610 GFNPDMQTYSAL 621



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 101/273 (36%), Gaps = 36/273 (13%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGA 71
           + +S  T +  I+ FG+ G +D A+ + +     N CQ   + + + +  LCEV+    A
Sbjct: 49  VGLSEVTCTECIQAFGRAGDLDAAMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQA 108

Query: 72  YALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
             L   M       PD   Y  L+  +C +G    A +  + +  +G   P         
Sbjct: 109 MTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKP--------- 159

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                                    +  +F++L+  +CK       + ++  +   GL A
Sbjct: 160 -------------------------NAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLKA 194

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV+    LI    + GM+ +A RLLH++           Y  ++    R GQ  +   F 
Sbjct: 195 DVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVASFM 254

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
              +  G   +   Y  +I    R GR  EA  
Sbjct: 255 ELARHDGCALSAVNYNFIIQGFIRCGRLAEATQ 287



 Score = 41.2 bits (95), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F + G    A+E+  +         +  YN L+ +L        AY L + M
Sbjct: 547 TYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEM 606

Query: 79  IRKGFVPDKRTYAILVN 95
           I KGF PD +TY+ L N
Sbjct: 607 IAKGFNPDMQTYSALPN 623


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 161/357 (45%), Gaps = 40/357 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +  M+   L  SP+TL+++ E +  +G    AV  F        +Q +  +N+LL  
Sbjct: 124 WALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDI 183

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC----------------------- 98
           LC+ K    A++L++ +  + F PD  TY IL N +C                       
Sbjct: 184 LCKSKRVETAHSLLKTLTSR-FRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPT 242

Query: 99  ------------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                        S +++EA EF  EM  +     V     ++ G   AG ++ AK++ +
Sbjct: 243 MVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFH 302

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKA 205
           +M+K+G V ++ T+N+LI+ +CK   VE  V ++  + + G+C  +V TY ++I  +   
Sbjct: 303 EMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHV 362

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G ++ A   +  + E G +     Y  +I+     G+ + A   F +M      PN   Y
Sbjct: 363 GDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTY 422

Query: 266 TMLIT---MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +LI+   +  +    V A   L++M + G  P    F+ V +GL   G  D A++I
Sbjct: 423 NVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEI 479



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 116/271 (42%), Gaps = 35/271 (12%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F+ A+AL+ RM      P  +T AIL   + S+GK   A      M++ G    +   + 
Sbjct: 120 FNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNT 179

Query: 128 LVQGLLNAGYLESAK----------------------------------QMVNKMIKQGF 153
           L+  L  +  +E+A                                   +++ +M+++G 
Sbjct: 180 LLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGI 239

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              + T+N++++   +S +++   E Y  + K     DV TY  +I     AG + +A R
Sbjct: 240 EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKR 299

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMC 272
           + H +V++G  P  + Y  +I+ + ++   ++A   F EM  +G   PN   Y ++I   
Sbjct: 300 VFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGL 359

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              G    A  ++  M E GL    + +++V
Sbjct: 360 CHVGDMERALGFMERMGEHGLRACVQTYNVV 390



 Score = 44.7 bits (104), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + L    QT +++I  F   G V+ A+EVF K    +C   +  YN L+ A+  
Sbjct: 372 MERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFV 431

Query: 65  VKLFHG---AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            K       A  L+  M+ +GF+P K T+  ++N    +G    A+E L+  S  G
Sbjct: 432 RKKSEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCG 487



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 39/176 (22%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K   V+NAV VF +      C   V+ YN ++  LC V     A   + R
Sbjct: 315 TYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMER 374

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQE----------------------------- 108
           M   G     +TY +++  +C +G++ +A E                             
Sbjct: 375 MGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKK 434

Query: 109 ---------FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                     L +M D+GF P     + ++ GL+  G  + AK+++    + G ++
Sbjct: 435 SEDLVVAGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFAKEILRMQSRCGRIV 490


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 129/283 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II E    G  D A EVF K +    Q   + YNSL+   C+         L+  +
Sbjct: 405 TCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNEL 464

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   P    Y +L+   C  G    A+  L +MS KG +P     D ++ G L +G  
Sbjct: 465 VAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDF 524

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  +++ N+   +G+     T N +I  +C  G+ +   EM+  + + G+ AD  TY  L
Sbjct: 525 EHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSL 584

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + ++  LL+ LV  G +P  S YA +I  + + G  + A   + +M  KG 
Sbjct: 585 IRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGI 644

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            P+  +   LI+   + GR  E  + L+ M E  + P    F+
Sbjct: 645 EPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKPKKAAFE 687



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 2/283 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           EV +   A N    +  Y  ++  LC+ +    AY +   +  +G+ PD+  Y  +++  
Sbjct: 284 EVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGL 343

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G   EA++   EM DKG  P     + ++ G L +G  E A ++ N+M  +G+    
Sbjct: 344 CEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTT 403

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T N +I  +C  G+ +   E++  + + G+ AD  TY  LI    K G +DE   LL+ 
Sbjct: 404 VTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNE 463

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           LV    +P  SLY  +I    + G F+ A     +M  KG  PN   Y  ++    + G 
Sbjct: 464 LVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGD 523

Query: 278 FVEAANYLVEMTEMGL-TPISRCFDLVTDGLKNCGKHDLAEKI 319
           F        E    G  T  + C  ++++ L + GK D A ++
Sbjct: 524 FEHVRELYNETCNKGYGTTTATCNKIISE-LCSRGKSDEASEM 565



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 134/302 (44%), Gaps = 1/302 (0%)

Query: 6   ELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           E++K    S  + +T+  +I+ F   G V    E+ N+            YN L+   C+
Sbjct: 216 EMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQ 275

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K +     ++  MI +  +P   TY  ++N  C + +  EA     ++ D+G+ P    
Sbjct: 276 AKNYASMSEVLHTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVM 335

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ GL   G    A+++  +M+ +G   +  T+N+++    KSG+ E   E+Y  +C
Sbjct: 336 YTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMC 395

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G      T   +I  +   G  DEAF +   + E G +     Y  +I+G  + G+ D
Sbjct: 396 NKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVD 455

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +     +E+  +   P+  +Y +LI    + G F  A   L +M+  GL P +  +D + 
Sbjct: 456 ERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTML 515

Query: 305 DG 306
            G
Sbjct: 516 HG 517



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 121/278 (43%), Gaps = 9/278 (3%)

Query: 43  CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSS 100
           CT  +C    +  N L  AL + K    A     +M+R   GF+PD  +    V   C  
Sbjct: 115 CTNHDCTPDPISSNMLFEALLDAKAVRAA-----KMVRDIAGFIPDSASLEQYVKCLCGV 169

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--LE 158
           G + EA E   ++ + G    +   + ++ G L AG  E   +   +MIK G   D   E
Sbjct: 170 GFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTE 229

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T   LI+  C SG+V    E+     K GL     TY  LI    +A        +LH +
Sbjct: 230 TVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTM 289

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +   H P    Y  II G+ +  +  +A+  F+++K +G+ P+R +YT +I      G F
Sbjct: 290 IARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSF 349

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            EA     EM + G+ P +  ++ +  G    G  + A
Sbjct: 350 GEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERA 387



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 107/235 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +     T + +I  F K G VD  + + N+  A + Q  V LY  L+   C+   
Sbjct: 429 MSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGD 488

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L+  M  KG  P+  TY  +++    SG     +E   E  +KG+       + 
Sbjct: 489 FEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNK 548

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L + G  + A +M  KM + G   D  T+NSLI   CK G+V   + +   +   G
Sbjct: 549 IISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQG 608

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           L    S+Y  LI  + + G  + A RL  ++V  G +P  +L   +I G+ ++G+
Sbjct: 609 LQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR 663



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ A+EV+ +      +  ++  NS+L    +       +   + MI+ G   D  T 
Sbjct: 170 GFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTE 229

Query: 91  AI--LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +  L+ A+C SG++    E L +    G +P     + L+ G   A    S  ++++ M
Sbjct: 230 TVGCLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTM 289

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL---GLCADVSTYKILIPAVSKA 205
           I +  +  + T+  +I  +CK+ E   C+E Y     L   G   D   Y  +I  + + 
Sbjct: 290 IARNHLPTIYTYQEIINGLCKNEE---CLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEM 346

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G   EA +L   +++ G +P    Y  ++ G  + G F+ A   ++EM  KG+       
Sbjct: 347 GSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTC 406

Query: 266 TMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             +I+ +C R G+  EA     +M+E G+   +  ++ +  G    GK D  E++ LL
Sbjct: 407 NKIISELCSR-GKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVD--ERMNLL 461



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 115/293 (39%), Gaps = 35/293 (11%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L    +   F  A  L   M  KG+     T   +++  CS GK  EA E  ++MS
Sbjct: 371 YNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMS 430

Query: 115 DKG-------FNPPVRG----------------------------RDLLVQGLLNAGYLE 139
           + G       +N  +RG                             +LL+      G  E
Sbjct: 431 ETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFE 490

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +AK+++  M  +G   +  T+++++    KSG+ E   E+Y   C  G     +T   +I
Sbjct: 491 AAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKII 550

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +   G  DEA  +   + E G K     Y  +I+G  + G+   +    +E+  +G  
Sbjct: 551 SELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQ 610

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           P+   Y  LI    + G    A     +M   G+ P +   + +  GL   G+
Sbjct: 611 PSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR 663



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 63/156 (40%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            +  T + II E    G  D A E+F K +    +   + YNSL+   C+      +  L
Sbjct: 541 TTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNL 600

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  ++ +G  P   +YA L+   C +G    A+    +M  KG  P    R+ L+ GL  
Sbjct: 601 LNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCK 660

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            G        +  M++         F  L E + +S
Sbjct: 661 QGRATEGMDRLMGMLENKIKPKKAAFEDLAECLIQS 696


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 38/334 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++    K GL  +A+E+ N   A  C+  +  Y  L+   C+      A  ++R M
Sbjct: 384 TFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREM 443

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG------- 124
           + KGF  +   Y  L++A C  GK+ EA +   EMS KG       FN  + G       
Sbjct: 444 LTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEM 503

Query: 125 -------RDLLVQGL--------------LNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                  RD++++G+              L  G ++ A ++VN M+ +G  LD  T+N L
Sbjct: 504 EDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGL 563

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+ +CK+G VE  + ++  + + GL   + T  ILI     AG +  A   + +++  G 
Sbjct: 564 IKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGF 623

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I G+ +RG+  +A   F +++ +G  P+   Y  LI    R G F +A  
Sbjct: 624 SPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACF 683

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            L    E G  P    ++++   + N GK   +E
Sbjct: 684 LLYRGVENGFVPNDVTWNIL---VYNFGKQSNSE 714



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 3/302 (0%)

Query: 23  IIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           ++  F ++G ++ A   V++K         V  +++L+  LC+  LF  A  L+  M  K
Sbjct: 352 LVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAK 411

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  TY IL++ +C  G++ EA   L+EM  KGF+    G + L+  L   G +  A
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             M  +M  +G   D+ TFNSLI  +C+  E+E  + +Y  +   G+ A+  T+  LI A
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G I EA +L+++++  G       Y  +IK + + G  +     F EM  KG  P+
Sbjct: 532 FLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPS 591

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                +LI      G+   A  ++ +M   G +P    ++ + +GL  C +  + E + L
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGL--CKRGRIQEALNL 649

Query: 322 LE 323
            E
Sbjct: 650 FE 651



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 5/248 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K   VD A+++  +     C   V  +N++++  C +        L+ RMI KG
Sbjct: 251 LIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKG 310

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F P+  TY  L++  C + ++ EAQ  L ++      P V   + LV G +  G L  A 
Sbjct: 311 FTPNDMTYGYLMHGLCKTCRIDEAQALLSKVP----GPNVVHFNTLVNGFVRNGRLNEAT 366

Query: 143 QMV-NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             V +KMI  G+V D+ TF++L+  +CK G     +E+   +   G   +++TY ILI  
Sbjct: 367 AFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDG 426

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K G ++EA  +L  ++  G       Y  +I  + + G+  +A   F EM  KG  P+
Sbjct: 427 FCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPD 486

Query: 262 RPVYTMLI 269
              +  LI
Sbjct: 487 IFTFNSLI 494



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 7/297 (2%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            VSP   T  L+++       VDNA  +    T   C    ++Y +L+ AL +      A
Sbjct: 205 GVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEA 264

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+  M   G  PD  T+  ++  +C   ++ E  + +  M  KGF P       L+ G
Sbjct: 265 LKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHG 324

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCVEMYYSVCKLGLCA 190
           L     ++ A+ +++K+     V     FN+L+    ++G + E    +Y  +   G   
Sbjct: 325 LCKTCRIDEAQALLSKVPGPNVV----HFNTLVNGFVRNGRLNEATAFVYDKMINNGYVP 380

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV T+  L+  + K G+   A  L++++   G KP  + Y  +I G  ++GQ ++A    
Sbjct: 381 DVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL 440

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            EM  KG   N   Y  LI+   + G+  EA +   EM+  G  P    F+ +  GL
Sbjct: 441 REMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGL 497



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 7/240 (2%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P  R+Y ++++          A     +M  KG +P      L+++ L     +++A  +
Sbjct: 173 PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLL 232

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M K G V +   + +LI+ + K   V+  +++   +  +G   DV+T+  +I    +
Sbjct: 233 LRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCR 292

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              + E  +L+  ++  G  P    Y  ++ G+ +  + D+A    S  K+ G  PN   
Sbjct: 293 LNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLS--KVPG--PNVVH 348

Query: 265 YTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +  L+    R GR  EA  ++ + M   G  P    F  + +GL  C K      +EL+ 
Sbjct: 349 FNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGL--CKKGLFGSALELVN 406



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 119/282 (42%), Gaps = 12/282 (4%)

Query: 40  FNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99
           FNK T F  Q C LL   L      +++F  A A      +KG+      Y +L++   +
Sbjct: 66  FNKITPF--QLCKLLELPLDVE-TSMEIFKWAGA------QKGYCHSFSVYYLLIDKLGA 116

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--L 157
           +   +     L +M ++G         L+++    AG    A +++  M K  +  +   
Sbjct: 117 AAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDM-KGVYCCEPSF 175

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            ++N +++ +           ++Y +   G+  +  T+ +++ A+     +D A  LL +
Sbjct: 176 RSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRD 235

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           + + G  P   +Y  +I  + +R + D+A     EM + G PP+   +  +I    R  R
Sbjct: 236 MTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNR 295

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +E A  +  M   G TP    +  +  GL    + D A+ +
Sbjct: 296 VLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQAL 337


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 145/304 (47%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A  +F +  +  C   V+ Y +L+ A  + K 
Sbjct: 314 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 373

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------SDKGFNPP 121
              A  +  RM+  G  P+  TY  LV+  C +G + +A E   ++      +D  F  P
Sbjct: 374 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 433

Query: 122 VRGRDLL----------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              R  L          V GL  A  ++ A ++++ M+  G   +   +++LI+  CK+G
Sbjct: 434 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAG 493

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI  + K G +D A ++L  +++D   P    Y 
Sbjct: 494 KIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 553

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R G+ + A    S M+ KG  PN   YT LI   G+ G+   + +   +M+  
Sbjct: 554 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK 613

Query: 292 GLTP 295
           G +P
Sbjct: 614 GCSP 617



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           E+     L+D A +++ +  A NC    +   +    LC V  F  A+ LI+ M+RKGFV
Sbjct: 226 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV 285

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY+ ++   C + K+ +A    QEM   G  P V    +L+     AG +E A+ +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M   G    + T+ +LI    K+ +V    ++++ +   G   +  TY  L+  + K
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 205 AGMIDEAFRLLHNLV--------------EDGHKPFPSL--YAPIIKGMFRRGQFDDAFC 248
           AG I +AF +   L+              ED H   P++  Y  ++ G+ +  + D A  
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN  VY  LI    + G+   A    ++MT+ G  P    +  + D + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 526 KDGRLDLAMKV 536



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 51/370 (13%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+    S +  T + +I  + K   V  A ++F++     C+   + Y +L+  LC+ 
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 66  KLFHGAYALIRRMI----------------RKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
                A+ +  ++I                R    P+  TY  LV+  C + K+  A E 
Sbjct: 407 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHEL 466

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L  M   G  P     D L+ G   AG ++SA+++  +M K G++  + T+ SLI+ + K
Sbjct: 467 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 526

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G ++  +++   + K     +V TY  +I  + + G  ++A +LL  + E G  P    
Sbjct: 527 DGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 586

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRG------------- 275
           Y  +I G+ + G+ D +   F++M  KG  PN   Y +LI  +C  G             
Sbjct: 587 YTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646

Query: 276 -------------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                                F+ +   L EM   G  PI+  + ++ D     G+ ++A
Sbjct: 647 QTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIA 706

Query: 317 EKI--ELLEV 324
            ++  E++EV
Sbjct: 707 MELHKEMMEV 716



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 22/341 (6%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I +M     + +P   + ++  +        A ++ N+ T   C    ++YN  + ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 63  C------EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           C         L   A  +   M+    V +K   A      C  GK  +A + ++EM  K
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P       ++  L +A  +E A  +  +M   G   D+ T+  LI++ CK+G +E  
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +  +G    V TY  LI A  KA  + +A  + H +V+ G +P    Y  ++ G
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 237 MFRRGQFDDAFCFFSEMKIKGH----------------PPNRPVYTMLITMCGRGGRFVE 280
           + + G    AF  ++++                      PN   Y  L+    +  +   
Sbjct: 403 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 462

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           A   L  M   G  P    +D + DG    GK D A+++ L
Sbjct: 463 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 503



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 8/258 (3%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+   K G +D A++V ++    +C   V+ Y +++  LC +     A  L+
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY  L++    +GK+  + +   +MS KG +P      +L+  L  A
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS--GEVEFCVEMYYSVCKLGLCADVS 193
           G L+ A+ ++ +M +  +   L+ +   I+   KS    +    EM       G      
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEME----SYGTVPIAP 688

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVE--DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            Y +LI   SKAG ++ A  L   ++E     K    +YA +I+ +    Q ++AF  +S
Sbjct: 689 VYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYS 748

Query: 252 EMKIKGHPPNRPVYTMLI 269
           EM  +G  P   V+  LI
Sbjct: 749 EMTRRGFVPELSVFVCLI 766



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 105/314 (33%), Gaps = 73/314 (23%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK------------ 102
           YN+L+  L         + + + M   GF  D+ T     +A C  G+            
Sbjct: 43  YNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIERED 102

Query: 103 --------------------MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                                 EA  FL  M      P V     L+ G L    L   K
Sbjct: 103 FKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCK 162

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++N M+ +G   +   FNSL+ + C   +  +  ++   +   G       Y I I ++
Sbjct: 163 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 222

Query: 203 -----------------------------------------SKAGMIDEAFRLLHNLVED 221
                                                       G  D+AF+L+  ++  
Sbjct: 223 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 282

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P  S Y+ +I  +    + + AF  F EMK+ G  P+   YT+LI    + G   +A
Sbjct: 283 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 342

Query: 282 ANYLVEMTEMGLTP 295
                EM  +G +P
Sbjct: 343 QWLFEEMRSVGCSP 356



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + LM+    S +  T + +I+  GK G +D ++++F + +   C    + Y  L+  L
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHL 629

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-- 120
           C   L   A  L+  M +  +    + Y   +  +  S     +   L+EM   G  P  
Sbjct: 630 CAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF--SKSFIASLGILEEMESYGTVPIA 687

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKM--IKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           PV G  +L+     AG LE A ++  +M  +      D + + SLI+ +C + +VE    
Sbjct: 688 PVYG--MLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 745

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           +Y  + + G   ++S +  LI  + +    DEA +L + +  +
Sbjct: 746 LYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 788


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 151/324 (46%), Gaps = 36/324 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ +K    S+S    +++I+ + K  +++ AVE F     F+C+  V  YN++L  
Sbjct: 111 WQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHV 170

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +   ++   A  +  RM++   +P+  T++IL++  C SGK + A +   EM+ +   P 
Sbjct: 171 MVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPN 230

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++ GL  A   + A ++   M   G + D  T+N+L+   CK G V        
Sbjct: 231 KITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRV-------- 282

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                                      DEA  LL    +D +      Y+ +I G+FR  
Sbjct: 283 ---------------------------DEALGLLKYFEKDRYVLDKQGYSCLIDGLFRAR 315

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +F+DA  ++ +M      P+  +YT+++    + G+F +A   L EMTE GL P + C++
Sbjct: 316 RFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYN 375

Query: 302 LVTDGLKNCGKHDLAEKIELLEVS 325
            +  G  + G  D A+ +  LE+S
Sbjct: 376 ALIKGYCDLGLLDEAKSLH-LEIS 398



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 138/299 (46%), Gaps = 13/299 (4%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +  Q  S +I+   +    ++A   + K T  N +  V+LY  ++  L +   F  A  L
Sbjct: 299 LDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRL 358

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M  +G VPD   Y  L+  +C  G + EA+    E+S            +L+ G+  
Sbjct: 359 LNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCR 418

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---------CK 185
           +G +  A+Q+ N+M K G    + TFN+LI+  CK+G +E    ++Y +          +
Sbjct: 419 SGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLR 478

Query: 186 LGLCA----DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           L   A    D ++ + ++  +  +G+I +A+ +L  L + G  P    Y  +I G  + G
Sbjct: 479 LSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAG 538

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
             + AF  F E+++KG  P+   Y  LI       R  +A   L ++ + G TPI+  +
Sbjct: 539 NINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVY 597



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 150/315 (47%), Gaps = 15/315 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    +    D A  +F       C    + YN+LL   C++     A  L++  
Sbjct: 233 TYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYF 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +  +V DK+ Y+ L++    + +  +AQ + ++M++    P V    ++++GL  AG  
Sbjct: 293 EKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKF 352

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M ++G V D   +N+LI+  C  G ++    ++  + K    +   TY IL
Sbjct: 353 KDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTIL 412

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + ++G++ +A ++ + + + G  P    +  +I G  + G  + A   F +M+I  +
Sbjct: 413 ICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRN 472

Query: 259 P---------PNR-----PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           P          NR      + TM+  +C   G  ++A N L+++T+ G  P    ++++ 
Sbjct: 473 PSLFLRLSQGANRVLDTASLQTMVEQLCD-SGLILKAYNILMQLTDSGFAPNIITYNILI 531

Query: 305 DGLKNCGKHDLAEKI 319
            G    G  + A K+
Sbjct: 532 HGFCKAGNINGAFKL 546



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 122/287 (42%), Gaps = 13/287 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  +N+       +++++   K G   +A+ + N+ T          YN+L+   C++ L
Sbjct: 327 MTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGL 386

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A +L   + +        TY IL+   C SG + +AQ+   EM   G  P V   + 
Sbjct: 387 LDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNA 446

Query: 128 LVQGLLNAGYLESAKQMVNKM-----------IKQGF--VLDLETFNSLIETICKSGEVE 174
           L+ G   AG +E A+ +  KM           + QG   VLD  +  +++E +C SG + 
Sbjct: 447 LIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLIL 506

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +   G   ++ TY ILI    KAG I+ AF+L   L   G  P    Y  +I
Sbjct: 507 KAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLI 566

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
            G+    + +DAF    ++   G  P   VY   +T   R  +   A
Sbjct: 567 NGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLA 613



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 148/354 (41%), Gaps = 55/354 (15%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ +   GL+D A  +  + +  +C      Y  L+  +C   L   A  +   M + G
Sbjct: 377 LIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHG 436

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR--------------DLL 128
             P   T+  L++ +C +G + +AQ    +M + G NP +  R                +
Sbjct: 437 CYPSVVTFNALIDGFCKAGNIEKAQLLFYKM-EIGRNPSLFLRLSQGANRVLDTASLQTM 495

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V+ L ++G +  A  ++ ++   GF  ++ T+N LI   CK+G +    +++  +   GL
Sbjct: 496 VEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGL 555

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY------------------ 230
             D  TY  LI  +  A   ++AF +L  ++++G  P   +Y                  
Sbjct: 556 SPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFS 615

Query: 231 -------------APIIKGM---FRRGQFDDAFCFFSEMKIKGHPPNRPVYTM-LITMCG 273
                        + ++K +   F +G+ ++A     EM  K +      YT+ LI +C 
Sbjct: 616 LWLKYLRSIPGRDSEVLKSVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLC- 674

Query: 274 RGGRFVEAANYLVEMTEMG--LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           + GR  EA      + E    +TP S C  L+   LK  G  DLA +I L  + 
Sbjct: 675 QAGRLEEALKIFFTLEEHNVLVTPPS-CVKLIYRLLK-VGNLDLAAEIFLYTID 726



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 128/330 (38%), Gaps = 18/330 (5%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + L +  N  +   +L  ++E+    GL+  A  +  + T       ++ YN L+   C+
Sbjct: 477 LRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCK 536

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               +GA+ L + +  KG  PD  TY  L+N   S+ +  +A   L ++   G  P    
Sbjct: 537 AGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEV 596

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV----EMY 180
               +        +  A  +  K ++     D E   S+ E   K GEVE  V    EM 
Sbjct: 597 YKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEK-GEVEEAVRGLLEMD 655

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           + +    L    + Y I +  + +AG ++EA ++   L E      P     +I  + + 
Sbjct: 656 FKLNDFQL----APYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIYRLLKV 711

Query: 241 GQFDDAFCFFSEMKIKGH---PP--NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  D A   F     KG+   P   NR + ++L +   R   F    + L  M  +G   
Sbjct: 712 GNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSEDKRNRAF----DLLSRMKSLGYDL 767

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            S         L+    H ++ KI  L  S
Sbjct: 768 DSHLHQTTKFLLQGDAGHQVSLKINFLSES 797


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 27/298 (9%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           V NK    N  +C          LC +  F  AY +IR M+ KGF+PD  TY+ ++   C
Sbjct: 184 VLNKVNISNFSRC----------LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLC 233

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
           ++ K+ +A +  QEM   G  P V     L+     AG++E A+   ++M + G   ++ 
Sbjct: 234 NASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVV 293

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL---- 214
           T+ +LI    KS +V    E+Y  +   G   ++ TY  LI  + KAG I++A ++    
Sbjct: 294 TYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353

Query: 215 -----------LHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
                      +H  V DG    P++  Y  ++ G+ +  Q  +A      M ++G  PN
Sbjct: 354 KKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPN 413

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             VY  LI  C + G+  EA      M E G  P    +  + D L    + DLA K+
Sbjct: 414 HVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKV 471



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 152/329 (46%), Gaps = 17/329 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++      + +I+ F K G ++ A   F++     C   V+ Y +L+ A  + + 
Sbjct: 248 MKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRK 307

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS------------- 114
              A  +   M+ KG  P+  TY  L++  C +GK+ +A +  + M              
Sbjct: 308 VSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHF 367

Query: 115 ---DKGFNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
              D   N P V     LV GL  A  ++ A+ ++  M  +G   +   +++LI+  CK+
Sbjct: 368 RVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKA 427

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+++   E++ ++ + G   +V TY  LI  + K   +D A ++L  ++E+   P   +Y
Sbjct: 428 GKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIY 487

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G+ + G+ D+A+     M+ KG  PN   YT +I   G+ GR  +    L +M+ 
Sbjct: 488 TEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  P    + ++ +   + G  D A K+
Sbjct: 548 KGCAPNFVTYRVLINHCCSTGLLDEAHKL 576



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 21/324 (6%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S +I        V+ A ++F +         V +Y +L+ + C+      A      
Sbjct: 223 STYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDE 282

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G  P+  TY  L++A+  S K+ +A E  + M  KG  P +     L+ GL  AG 
Sbjct: 283 MERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342

Query: 138 LESAKQMVNKMIKQGF-VLDLE----------------TFNSLIETICKSGEVEFCVEMY 180
           +E A Q+   M K+   + D++                T+ +L++ +CK+ +V+   ++ 
Sbjct: 343 IEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLL 402

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            S+   G   +   Y  LI    KAG +DEA  +   ++E G+ P    Y+ +I  +F+ 
Sbjct: 403 KSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKD 462

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + D A    S+M      PN  +YT +I    + G+  EA   +V M E G  P    +
Sbjct: 463 KRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTY 522

Query: 301 DLVTDGLKNCGKHDLAEK-IELLE 323
             + DG    GK    EK +ELL+
Sbjct: 523 TAMIDGF---GKSGRVEKCLELLQ 543



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 132/289 (45%), Gaps = 17/289 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K   V  A EV+    +  C   ++ Y +L+  LC+      A  + + M
Sbjct: 294 TYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIM 353

Query: 79  IRKGF-VPDKR----------------TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            ++   +PD                  TY  LV+  C + +++EA++ L+ MS +G  P 
Sbjct: 354 KKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPN 413

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               D L+ G   AG L+ A+++   M++ G+  ++ T++SLI+ + K   ++  +++  
Sbjct: 414 HVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLS 473

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +     +V  Y  +I  + K G  DEA++L+  + E G  P    Y  +I G  + G
Sbjct: 474 KMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSG 533

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           + +       +M  KG  PN   Y +LI  C   G   EA   L EM +
Sbjct: 534 RVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 9/311 (2%)

Query: 17  PQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           P T+  + +I    +  L + A++   +  A +C   VL Y  LL      +       +
Sbjct: 40  PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRI 99

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  MI +G  P  R +  LV+A+C SG    A + L++M   G  P     ++L+ G+ +
Sbjct: 100 LSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICS 159

Query: 135 A-----GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +       L+ A++   +M++ G VL+    ++    +C  G+ E    +   +   G  
Sbjct: 160 SEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFI 219

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D STY  +I  +  A  +++AF+L   +  +G  P   +Y  +I    + G  + A  +
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLK 308
           F EM+  G  PN   YT LI    +  R V  AN + EM    G TP    +  + DGL 
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLK-SRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLC 338

Query: 309 NCGKHDLAEKI 319
             GK + A +I
Sbjct: 339 KAGKIEKASQI 349



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 110/275 (40%), Gaps = 43/275 (15%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +LC+   +  A +L+ +   + FVPD   Y  +++  C +    EA +FL  M      P
Sbjct: 19  SLCKSGKWREALSLLEK---EEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLP 75

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+ G LN   L   K++++ MI +G       FNSL+   C+SG+  +  ++ 
Sbjct: 76  NVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLL 135

Query: 181 YSVCKLGLCADVSTYKILIPAVSKA----------------------------------- 205
             + + G       Y ILI  +  +                                   
Sbjct: 136 KKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSR 195

Query: 206 -----GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
                G  ++A+ ++  ++  G  P  S Y+ +I  +    + + AF  F EMK  G  P
Sbjct: 196 CLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAP 255

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +  VYT LI    + G   +A N+  EM   G  P
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAP 290



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 125/273 (45%), Gaps = 12/273 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K   +D A++V +K    +C   V++Y  ++  LC+V     AY L+  M
Sbjct: 451 TYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMM 510

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  +++ +  SG++ +  E LQ+MS KG  P      +L+    + G L
Sbjct: 511 EEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLL 570

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS--VCKLGLCADVSTYK 196
           + A +++ +M +  +   +  +  +IE   +    EF   +Y S  + +         Y+
Sbjct: 571 DEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR----EFIASLYLSFEISENDSVPVAPVYR 626

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS----LYAPIIKGMFRRGQFDDAFCFFSE 252
           +LI    KAG ++ A  L   L      PF +    ++  +I+ +    + D AF  +++
Sbjct: 627 VLIDNFIKAGRLEIALELNEEL--SSFSPFSAANQNIHITLIENLSLAHKADKAFELYAD 684

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           M  +G  P   +   LI    R  R+ EA   L
Sbjct: 685 MISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 146/309 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K +   ++    + +I+ FGK G+V+  + V+ K      +  +  YN L+  L     
Sbjct: 160 IKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 219

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M      PD  TY  ++  +C +G+ ++A E L++M  +G          
Sbjct: 220 VDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMT 279

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++Q         S   +  +M ++G  +    F+ +I  +CK G++     ++ ++ + G
Sbjct: 280 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 339

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V+ Y +LI   +K+G +++A RLLH ++++G KP    Y+ ++ G+ + G+ ++A 
Sbjct: 340 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 399

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +F   +  G   N   Y+ LI   G+ GR  EA     EM+E G T  S C++ + D  
Sbjct: 400 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 459

Query: 308 KNCGKHDLA 316
               K D A
Sbjct: 460 TKHRKVDEA 468



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 2/313 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    + V P   SL+I    K G ++    VF        +  V +Y  L+    +   
Sbjct: 300 MDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGS 359

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ RMI +GF PD  TY+++VN  C +G++ EA ++       G          
Sbjct: 360 VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSS 419

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG ++ A+++  +M ++G   D   +N+LI+   K  +V+  + ++  + +  
Sbjct: 420 LIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE 479

Query: 188 LCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            C   V TY IL+  + K    +EA +L   +++ G  P  + +  +  G+   G+   A
Sbjct: 480 GCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 539

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                E+   G   +     M+ T+C + GR  EA      +TE G     R   ++ + 
Sbjct: 540 CKILDELAPMGVILDAACEDMINTLC-KAGRIKEACKLADGITERGREVPGRIRTVMINA 598

Query: 307 LKNCGKHDLAEKI 319
           L+  GK DLA K+
Sbjct: 599 LRKVGKADLAMKL 611



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 141/326 (43%), Gaps = 40/326 (12%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
            VD+A  VF    +   +  ++ YN+++   C+      A   +R M  +G   DK TY 
Sbjct: 219 FVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYM 278

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-----LNAGY--------- 137
            ++ A  +           QEM +KG   P     L++ GL     LN GY         
Sbjct: 279 TMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK 338

Query: 138 ---------------------LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
                                +E A +++++MI +GF  D+ T++ ++  +CK+G VE  
Sbjct: 339 GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEA 398

Query: 177 VEMYYSVCKL-GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           ++ Y+  C+  GL  +   Y  LI  + KAG +DEA RL   + E G       Y  +I 
Sbjct: 399 LD-YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALID 457

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG--RGGRFVEAANYLVEMTEMGL 293
              +  + D+A   F  M+ +    ++ VYT  I + G  +  R  EA      M + G+
Sbjct: 458 AFTKHRKVDEAIALFKRME-EEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGI 516

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
           TP + CF  ++ GL   GK   A KI
Sbjct: 517 TPTAACFRALSTGLCLSGKVARACKI 542



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 126/287 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD    V ++   F     V   N+L+ +  ++ +      + R+M   G  P   TY  
Sbjct: 150 VDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNF 209

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N   S+  +  A+   + M      P +   + +++G   AG  + A + +  M  +G
Sbjct: 210 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 269

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+ ++I+      +   CV +Y  + + G+      + ++I  + K G ++E +
Sbjct: 270 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGY 329

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +  N++  G KP  ++Y  +I G  + G  +DA      M  +G  P+   Y++++   
Sbjct: 330 TVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGL 389

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + GR  EA +Y       GL   S  +  + DGL   G+ D AE++
Sbjct: 390 CKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 436



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 2/218 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+++    S +I+  GK G VD A  +F + +   C +    YN+L+ A  + +    A 
Sbjct: 410 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAI 469

Query: 73  ALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL +RM  + G      TY IL++      +  EA +    M DKG  P       L  G
Sbjct: 470 ALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTG 529

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A ++++++   G +LD      +I T+CK+G ++   ++   + + G    
Sbjct: 530 LCLSGKVARACKILDELAPMGVILDAAC-EDMINTLCKAGRIKEACKLADGITERGREVP 588

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
                ++I A+ K G  D A +L+H+ +  G++   S+
Sbjct: 589 GRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSV 626



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 2/200 (1%)

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L  A  ++  + + +++ K  F + +   N+LI++  K G VE  + ++  + + G
Sbjct: 140 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 199

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY  L+  +  A  +D A R+   +     KP    Y  +IKG  + GQ   A 
Sbjct: 200 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 259

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +M+ +GH  ++  Y  +I  C     F        EM E G+      F LV  GL
Sbjct: 260 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 319

Query: 308 KNCGKHDLAEKIELLEVSLR 327
             C +  L E   + E  +R
Sbjct: 320 --CKEGKLNEGYTVFENMIR 337


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 132/287 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K   V  A+ VF +      +  V+ YN L+  LC       A AL  +M
Sbjct: 230 TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     P+  T+ +L+N +C +  + EA     +M  +G +P       L+      G +
Sbjct: 290 VSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRM 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  + N MI +G   ++ T+N LI  +C+ G+V+    +   +    L ADV TY IL
Sbjct: 350 EDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNIL 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++ K G   +A +LL  + E G  P    Y  ++ G  R G    A    + M+ KG 
Sbjct: 410 IDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGK 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
             N   + +LI      GR  +A   L EM E GL P    ++++ +
Sbjct: 470 QANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKE 516



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 3/291 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE---VKLFHGAYALI 75
           + ++++    K G ++ A +V      +     V+ YN+L+   C+   +   + A A++
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M+ KG  P++ TY IL++ +C    +  A     EM  +G  P V   ++L+ GL + 
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSD 276

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A  + ++M+      ++ T N LI   CK+  V   + ++  + K G+  +  TY
Sbjct: 277 GKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTY 336

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI A  K G +++AF L + +++ G  P  S Y  +I G+ R+G    A    +EM  
Sbjct: 337 TTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           K    +   Y +LI    + G   +A   L EM E GL P    ++ + DG
Sbjct: 397 KKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDG 447



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 130/261 (49%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +  T +++I      G VD AV + ++  + + +  V+ +N L+   C+ K 
Sbjct: 254 MQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKT 313

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  L   M ++G  P+  TY  L++A+C  G+M +A      M D+G  P V   + 
Sbjct: 314 VNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNC 373

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G +++A+ ++N+M+ +    D+ T+N LI+++CK GE    V++   + + G
Sbjct: 374 LIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKG 433

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L     TY  L+    + G +  A  +   +   G +     +  +IKG   +G+ +DA 
Sbjct: 434 LNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDAN 493

Query: 248 CFFSEMKIKGHPPNRPVYTML 268
              +EM  +G  PNR  Y ++
Sbjct: 494 GLLNEMLERGLVPNRTTYEII 514



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 5/275 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG---KMREAQE 108
           V+ +N ++  LC+V   + A  +I  M   G  P+  TY  L++ +C  G   KM +A  
Sbjct: 155 VISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADA 214

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L+EM  KG  P     ++L+ G      +  A ++  +M +QG   ++ T+N LI  +C
Sbjct: 215 ILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLC 274

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G+V+  V +   +    L  +V T+ +LI    K   ++EA  L +++ + G  P   
Sbjct: 275 SDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAM 334

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I    + G+ +DAF  ++ M  +G  P    Y  LI    R G    A + + EM
Sbjct: 335 TYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM 394

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               L+     ++++ D L  C K +  + ++LL+
Sbjct: 395 VSKKLSADVVTYNILIDSL--CKKGESRKAVKLLD 427



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 129/281 (45%), Gaps = 5/281 (1%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E F +   +  +  ++  N LL  L +         + R MI++    +  ++ I+VN  
Sbjct: 106 EAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGL 165

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG---LLNAGYLESAKQMVNKMIKQGFV 154
           C  GK+  A + +++M   G +P V   + L+ G   +   G +  A  ++ +M+ +G  
Sbjct: 166 CKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGIC 225

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  T+N LI+  CK   V   + ++  + + GL  +V TY ILI  +   G +DEA  L
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +V    +P    +  +I G  +    ++A   F++M+ +G  PN   YT LI    +
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCK 345

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            GR  +A      M + G+ P    ++ +  GL  C K D+
Sbjct: 346 DGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGL--CRKGDV 384



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   +L  +  T +++I  F K+  V+ A+ +FN           + Y +L+ A C+   
Sbjct: 289 MVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGR 348

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+AL   MI +G  P+  TY  L+   C  G ++ A+  + EM  K  +  V   ++
Sbjct: 349 MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNI 408

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L   G    A +++++M ++G      T+N+L++  C+ G +   + +   + + G
Sbjct: 409 LIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKG 468

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             A+V T+ +LI      G +++A  LL+ ++E G  P  + Y  I + M  +G
Sbjct: 469 KQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKG 522



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 5/234 (2%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +LV A+  + K+    E  +   D GF   +   + L+ GL+        + +  +MIK+
Sbjct: 90  MLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKR 149

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
              L++ +FN ++  +CK G++    ++   +   G+  +V TY  LI    K G I + 
Sbjct: 150 KIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKM 209

Query: 212 FR---LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ++   +L  +V  G  P    Y  +I G  +      A   F EM+ +G  PN   Y +L
Sbjct: 210 YKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNIL 269

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           I      G+  EA     +M    L P     +++ +G   C    + E I L 
Sbjct: 270 INGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGF--CKNKTVNEAINLF 321



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 60/131 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    LS    T +++I+   K G    AV++ ++          + YN+L+   C    
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +  RM RKG   +  T+ +L+  +C  G++ +A   L EM ++G  P     ++
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEI 513

Query: 128 LVQGLLNAGYL 138
           + + ++  G++
Sbjct: 514 IKEEMMEKGFV 524



 Score = 38.9 bits (89), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 16/122 (13%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M    L+ S  T + +++ + + G +  A+ V  +      Q  V+ +N L+   
Sbjct: 424 KLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGF 483

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M+ +G VP++ TY I+                 +EM +KGF P +
Sbjct: 484 CLKGRLEDANGLLNEMLERGLVPNRTTYEIIK----------------EEMMEKGFVPDI 527

Query: 123 RG 124
            G
Sbjct: 528 EG 529


>gi|226530981|ref|NP_001141613.1| uncharacterized protein LOC100273731 [Zea mays]
 gi|194705268|gb|ACF86718.1| unknown [Zea mays]
 gi|414870824|tpg|DAA49381.1| TPA: hypothetical protein ZEAMMB73_722490 [Zea mays]
          Length = 504

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 140/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+  E M    L VS +T  L+I    K GL    VE F + + FN +     +N++L+
Sbjct: 198 MWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRRRLVERFIRSSTFNYRPFRNAFNAILY 257

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  ++ +     +  +MI +G+ PD  TY +++ A    GK+ +  + L EM   G  P
Sbjct: 258 TLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKYMLGKLDQFHQLLDEMGKNGLTP 317

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   +LL+  L       +A  ++N M   G   ++  F +LI+ + ++G +E C   +
Sbjct: 318 DLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVLHFTNLIDGLGRAGNLEACRYFF 377

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I +   AG  +EA R   +++  G  P    Y  +I+G+   
Sbjct: 378 DEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDMLMRGQLPNVYTYNSMIQGLCAV 437

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD AF    +M   G  PN  VY+ L+      G+  +A N +  MT+ G
Sbjct: 438 GEFDKAFTMLKDMDSHGCTPNFSVYSSLVRRLRNAGKDTQANNVIKYMTDKG 489



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 112/268 (41%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q    +YN ++    E       + L   M  KG     RT+ +L+ A    G  R   E
Sbjct: 176 QHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRRRLVE 235

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
                S   + P     + ++  LL        + +  KMI +G+  D+ T+N ++    
Sbjct: 236 RFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVLRAKY 295

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G+++   ++   + K GL  D+ TY +L+  + K      A  LL+ + + G +P   
Sbjct: 296 MLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCRPNVL 355

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            +  +I G+ R G  +    FF EM  KG  P+   YT++I      G F EA  +  +M
Sbjct: 356 HFTNLIDGLGRAGNLEACRYFFDEMMKKGCDPDVVCYTVMIASYVAAGEFEEAQRFFDDM 415

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G  P    ++ +  GL   G+ D A
Sbjct: 416 LMRGQLPNVYTYNSMIQGLCAVGEFDKA 443



 Score = 45.8 bits (107), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 35/198 (17%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM-- 207
           ++G+      +N +++   + GEV+    ++  +   GL     T+ +LI A  K G+  
Sbjct: 172 QEGYQHSTSMYNLVMKVFAECGEVKAMWRLFEEMAAKGLPVSSRTFHLLICASVKVGLRR 231

Query: 208 ----------------IDEAFRLL---------HNLVE--------DGHKPFPSLYAPII 234
                              AF  +         ++L+E        +G+ P    Y  ++
Sbjct: 232 RLVERFIRSSTFNYRPFRNAFNAILYTLLTIEQYSLIEWVHEKMILEGYSPDVLTYNVVL 291

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +  +  G+ D       EM   G  P+   Y +L+ + G+G + + A N L  M+++G  
Sbjct: 292 RAKYMLGKLDQFHQLLDEMGKNGLTPDLHTYNLLLHVLGKGDKPLAALNLLNYMSDVGCR 351

Query: 295 PISRCFDLVTDGLKNCGK 312
           P    F  + DGL   G 
Sbjct: 352 PNVLHFTNLIDGLGRAGN 369


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  127 bits (319), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 144/302 (47%), Gaps = 2/302 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G  + AV VF K     C+  V+ YN+++ +LC+ +L + A   +  M+ +G
Sbjct: 204 LINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRG 263

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  +V+  C  G++ EA    + M   G  P V   ++++  L     +  A 
Sbjct: 264 IPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAA 323

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             +++M+ QG   D+ T+ +++  +C  G++   + ++  + + G   DV  Y  +I ++
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  ++++A   L  +V+ G  P    Y+ I+ G    GQ D+A   F EM  +   PN 
Sbjct: 384 CKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNT 443

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             +++L+    + G   EA      MTE G+ P    ++ + +G   C +  + E  ++ 
Sbjct: 444 LTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGY--CLRCKMNEARKVF 501

Query: 323 EV 324
           E+
Sbjct: 502 EI 503



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 146/312 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + ++ +  +L+++I    +   VD AV V+ K      Q  V+ + +L+  +C    
Sbjct: 119 MDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGK 178

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+R G  PD  +Y  L+N  C+SG    A    ++M   G  P V   + 
Sbjct: 179 IKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNT 238

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A   +++M+ +G   D  T+NS++  +C  G++     ++  + + G
Sbjct: 239 IIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNG 298

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY I+I ++ K  ++++A   L  +V+ G  P    Y  I+ G+   GQ ++A 
Sbjct: 299 CKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAI 358

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +M+ KG  P+   Y  +I    +     +A  +L EM + G+ P +  +  +  G 
Sbjct: 359 RLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGF 418

Query: 308 KNCGKHDLAEKI 319
            N G+ D A ++
Sbjct: 419 CNLGQLDEATQL 430



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 2/301 (0%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K + L + P   T + +I      G +  AVE++N+      +  V+ YN+L+  LC   
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A  + ++M + G  P+  TY  ++++ C    + +A +FL EM  +G  P     +
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            +V GL   G L  A ++  +M + G   D+ T+N +I+++ K   V    +    +   
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQ 332

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  DV TY  ++  +   G ++EA RL   + + G KP    Y  II  + +    +DA
Sbjct: 333 GIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDA 392

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F SEM  +G PPN   Y+ ++      G+  EA     EM    + P +  F ++ DG
Sbjct: 393 MEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDG 452

Query: 307 L 307
           L
Sbjct: 453 L 453



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 1/258 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+  F   G +D A ++F +    N     L ++ L+  LC+  +   A  +   M
Sbjct: 410 TYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETM 469

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+N +C   KM EA++  + M  KG  P +   ++L+ G  N+  +
Sbjct: 470 TEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRM 529

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK ++ +M  +    +  T+N++++ +C  G +    E++  +C  G+   + TY IL
Sbjct: 530 DKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSIL 589

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG- 257
           +  + K G +DEA +L  ++ E   +P   LY  +I+GMF  G+ + A   FS++   G 
Sbjct: 590 LNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGI 649

Query: 258 HPPNRPVYTMLITMCGRG 275
            PP R    M+  +   G
Sbjct: 650 QPPGRTYNVMIKGLLKEG 667



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 131/283 (46%), Gaps = 2/283 (0%)

Query: 41  NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS 100
           N+   F     V   N L+  LC +     A ++  +M + G  PD  T+  L+N  C+ 
Sbjct: 117 NQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNE 176

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           GK++ A E   EM   G  P V   + L+ GL N+G    A  +  KM + G   ++ T+
Sbjct: 177 GKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTY 236

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           N++I+++CK   V   ++    +   G+  D  TY  ++  +   G ++EA RL   + +
Sbjct: 237 NTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQ 296

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           +G KP    Y  II  +++    +DA  F SEM  +G PP+   YT ++      G+  E
Sbjct: 297 NGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNE 356

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           A     +M + G  P    ++ + D L  C    + + +E L 
Sbjct: 357 AIRLFKKMEQKGCKPDVVAYNTIIDSL--CKDRLVNDAMEFLS 397



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 126/247 (51%), Gaps = 2/247 (0%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +V P TL  S++++   + G+V  A  VF   T    +  +  YN+L+   C     + A
Sbjct: 438 NVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEA 497

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M+ KG  PD  +Y IL+N +C+S +M +A+  L +MS K   P     + +++G
Sbjct: 498 RKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKG 557

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G L  A+++  KM   G +  L T++ L+  +CK G ++  ++++ S+ +  L  D
Sbjct: 558 LCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPD 617

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           +  Y ILI  +   G ++ A  L   L  DG +P    Y  +IKG+ + G  D+A+  F 
Sbjct: 618 IILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFR 677

Query: 252 EMKIKGH 258
           + K+  H
Sbjct: 678 KWKMMKH 684



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 141/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+   K  LV++A +  ++         V+ Y ++L  LC +   + A  L ++M
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  PD   Y  ++++ C    + +A EFL EM D+G  P       ++ G  N G L
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A Q+  +M+ +  + +  TF+ L++ +C+ G V     ++ ++ + G+  ++ TY  L
Sbjct: 425 DEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNAL 484

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        ++EA ++   +V  G  P    Y  +I G     + D A    ++M +K  
Sbjct: 485 MNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKL 544

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  ++      GR ++A     +M   G+ P    + ++ +GL   G  D A K
Sbjct: 545 TPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALK 604

Query: 319 I 319
           +
Sbjct: 605 L 605



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 145/311 (46%), Gaps = 1/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K  LV++A++  ++          + YNS++  LC +   + A  L +RM
Sbjct: 235 TYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRM 294

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  PD  TY I++++      + +A +FL EM D+G  P V     ++ GL   G L
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  KM ++G   D+  +N++I+++CK   V   +E    +   G+  +  TY  +
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTI 414

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G +DEA +L   +V     P    ++ ++ G+ + G   +A   F  M  KG 
Sbjct: 415 LHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGV 474

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  L+       +  EA      M   G  P    ++++ +G  N  + D A+ 
Sbjct: 475 EPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKA 534

Query: 319 IELLEVSLRSV 329
           + L ++S++ +
Sbjct: 535 L-LTQMSVKKL 544



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 137/297 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV++A+E  ++          + Y+++L   C +     A  L + M+ + 
Sbjct: 379 IIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN 438

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+  T++ILV+  C  G + EA+   + M++KG  P +   + L+ G      +  A+
Sbjct: 439 VMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   M+ +G   DL ++N LI   C S  ++    +   +    L  +  TY  ++  +
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G + +A  L   +   G  P    Y+ ++ G+ + G  D+A   F  MK K   P+ 
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI 618

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +YT+LI     GG+   A     +++  G+ P  R ++++  GL   G  D A ++
Sbjct: 619 ILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYEL 675



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 142/299 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I+      G ++ A+ +F K     C+  V+ YN+++ +LC+ +L + A   +  M
Sbjct: 340 TYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEM 399

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY+ +++ +C+ G++ EA +  +EM  +   P      +LV GL   G +
Sbjct: 400 VDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMV 459

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ +   M ++G   ++ T+N+L+   C   ++    +++  +   G   D+ +Y IL
Sbjct: 460 SEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNIL 519

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I     +  +D+A  LL  +      P    Y  I+KG+   G+  DA   F +M   G 
Sbjct: 520 INGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGM 579

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P    Y++L+    + G   EA      M E  L P    + ++ +G+   GK ++A+
Sbjct: 580 LPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAK 638



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 134/282 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ A  +F +     C+  V+ YN ++ +L + +L + A   +  M+ +G  PD  TY
Sbjct: 282 GQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTY 341

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             +++  C  G++ EA    ++M  KG  P V   + ++  L     +  A + +++M+ 
Sbjct: 342 TTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVD 401

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +  T+++++   C  G+++   +++  +    +  +  T+ IL+  + + GM+ E
Sbjct: 402 RGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSE 461

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +   + E G +P    Y  ++ G   R + ++A   F  M  KG  P+   Y +LI 
Sbjct: 462 ARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILIN 521

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                 R  +A   L +M+   LTP +  ++ +  GL   G+
Sbjct: 522 GYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR 563



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 2/291 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+A+  F +    N +  ++ +   L ++ ++K +     L  +M   G      +  I
Sbjct: 74  VDDALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNI 133

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C    +  A     +M   G  P V     L+ G+ N G ++ A ++ N+M++ G
Sbjct: 134 LINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSG 193

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ ++N+LI  +C SG     V ++  + + G   +V TY  +I ++ K  ++++A 
Sbjct: 194 HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAM 253

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  +V  G  P    Y  I+ G+   GQ ++A   F  M+  G  P+   Y ++I   
Sbjct: 254 DFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +     +AA++L EM + G+ P    +  +  GL  C    L E I L +
Sbjct: 314 YKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGL--CYLGQLNEAIRLFK 362



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 82/178 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E+M     +    + +++I  +     +D A  +  + +        + YN+++  L
Sbjct: 499 KVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGL 558

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C V     A  L ++M   G +P   TY+IL+N  C  G + EA +  + M +K   P +
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI 618

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
               +L++G+   G LE AK + +K+   G      T+N +I+ + K G  +   E++
Sbjct: 619 ILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +  T + I++     G + +A E+F K  +      ++ Y+ LL  LC+      A 
Sbjct: 544 LTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEAL 603

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L + M  K   PD   Y IL+      GK+  A+    ++S  G  PP R  +++++GL
Sbjct: 604 KLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663

Query: 133 LNAGYLESAKQMVN--KMIKQGFVL 155
           L  G  + A ++    KM+K   ++
Sbjct: 664 LKEGLSDEAYELFRKWKMMKHNVII 688


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 148/324 (45%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K  LV+ A+++F+   A      +  YNSL+  LC  + +  A AL+  M
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV---------------- 122
                +P+  T+ +LV+A C  GK+ EAQ   + M++ G  P V                
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEI 356

Query: 123 ------------RG-------RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       +G        ++L++G   A  ++ AKQ+ N+MI QG   D   +N+L
Sbjct: 357 VEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTL 416

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +    +++ ++   G   D+ TY +L+    K G + +AFRL   +     
Sbjct: 417 IHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYL 476

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP  ++Y  +I  M + G   DA   FSE+ ++G  PN  +YT +I    + G   EA  
Sbjct: 477 KPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALE 536

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
               M   G  P    ++++  G 
Sbjct: 537 AFRNMEGDGCPPDEFSYNVIIRGF 560



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 143/306 (46%), Gaps = 2/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G    AVE F+   A  CQ  V  Y +++  LC++     A  L ++M
Sbjct: 167 TFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKM 226

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY IL+++ C    + EA +    M  K  +P +   + L+QGL N    
Sbjct: 227 EEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRW 286

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++N+M     + ++ TFN L++ ICK G+V     ++ ++ ++G+  DV TY  L
Sbjct: 287 KEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSL 346

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S    I EA +L   ++  G KP    Y  +IKG  +  + D+A   F+EM  +G 
Sbjct: 347 MYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGL 406

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    + GR  EA +    M   G  P    + ++ DG   C +  L + 
Sbjct: 407 TPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF--CKEGYLGKA 464

Query: 319 IELLEV 324
             L  V
Sbjct: 465 FRLFRV 470



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 134/305 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    TLS++I+ F     VD A  VF+K      Q   + +N+L+  LC+V  
Sbjct: 121 MELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK 180

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A          G  P   TY  ++N  C  G+   A    ++M + G  P V   ++
Sbjct: 181 FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI 240

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L     +  A  + + M  +    D+ T+NSLI+ +C     +    +   +  L 
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  ++ T+ +L+ A+ K G + EA  +   + E G +P    Y+ ++ G   R +  +A 
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   Y +LI    +  R  EA     EM   GLTP +  ++ +  GL
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 308 KNCGK 312
              G+
Sbjct: 421 CQLGR 425



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 100/222 (45%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A ++F+      C+     YN L+   C+ K    A  L   MI +G  PD   Y  L++
Sbjct: 359 ARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIH 418

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++REAQ+  + M   G  P +    +L+ G    GYL  A ++   M       
Sbjct: 419 GLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKP 478

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+  +N LI+ +CK G ++   +++  +   GL  +V  Y  +I  + K G++DEA    
Sbjct: 479 DIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAF 538

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            N+  DG  P    Y  II+G  +      A     EM+ +G
Sbjct: 539 RNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRG 580



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 122/273 (44%), Gaps = 6/273 (2%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYA 91
           +D+A+  FN         C++ +  LL A+ ++  ++GA  +L ++M   G  PD  T +
Sbjct: 75  IDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLS 134

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL++ +    ++  A     +M   G  P     + L+ GL   G    A +  +     
Sbjct: 135 ILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEAS 194

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G    + T+ ++I  +CK GE      ++  + + G   +V TY ILI ++ K  +++EA
Sbjct: 195 GCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEA 254

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +   +      P    Y  +I+G+    ++ +A    +EM      PN   + +L+  
Sbjct: 255 LDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDA 314

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             + G+  EA      MTEMG+ P     D+VT
Sbjct: 315 ICKEGKVSEAQGVFKTMTEMGVEP-----DVVT 342



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++ F K G +  A  +F    +   +  + +YN L+ A+C+      A  L   +
Sbjct: 447 TYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSEL 506

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +P+ + Y  ++N  C  G + EA E  + M   G  P     +++++G L     
Sbjct: 507 FVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDE 566

Query: 139 ESAKQMVNKMIKQGFVLDLET 159
             A Q++ +M  +GFV +  T
Sbjct: 567 SRAAQLIGEMRDRGFVAEAGT 587



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +  Y+ LL   C+      A+ L R M      PD   Y IL++A C  G +++A++   
Sbjct: 445 LFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFS 504

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+  +G  P V+    ++  L   G L+ A +    M   G   D  ++N +I    +  
Sbjct: 505 ELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYK 564

Query: 172 EVEFCVEMYYSVCKLGLCADVST 194
           +     ++   +   G  A+  T
Sbjct: 565 DESRAAQLIGEMRDRGFVAEAGT 587


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 144/298 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G V +A+ + +      CQ  V+ Y  LL A+C+   F  A  ++  M
Sbjct: 139 TYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEM 198

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY +++N  C   ++ +A++ L  +S  GF P       +++GL  A   
Sbjct: 199 RAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRW 258

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +  +M++   V +  TF+ L+   C+ G VE  +E+   + + G  A+ +   I+
Sbjct: 259 EDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIV 318

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++ K G +D+AF  L+N+   G  P    Y  ++KG+ R G+++DA    +EM  K  
Sbjct: 319 INSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNC 378

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PPN   +   I +  + G   +A   + +M E G +     ++ + +G    G+ D A
Sbjct: 379 PPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSA 436



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 127/253 (50%), Gaps = 3/253 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M  Y  SV   T + ++  F   G VD+A+E+FN   +  C+   + Y +LL  LC 
Sbjct: 405 IEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFN---SLPCEPNTITYTTLLTGLCH 461

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A  L+  M++     +  T+ +LV+ +C  G + EA E +Q+M + G  P +  
Sbjct: 462 AERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLIT 521

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G+      E A ++++ ++ +G  LD  T++S+++ + +   +E  V+M+++V 
Sbjct: 522 FNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQ 581

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +G+      Y  ++ A+ K    D A     ++V +   P  S Y  +I+G+ R G   
Sbjct: 582 DMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGLAREGLLK 641

Query: 245 DAFCFFSEMKIKG 257
           +A    SE+  +G
Sbjct: 642 EARYVLSELCSRG 654



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL+D A+ +  +   + C   ++ YN+L+   C       A  L   +  +   P+  
Sbjct: 394 QKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE---PNTI 450

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C + ++  A E L EM        V   ++LV      G++E A ++V +M
Sbjct: 451 TYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQM 510

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L TFN+L++ I +    E  +E+ + +   G+  D  TY  ++  +S+   I
Sbjct: 511 MEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRI 570

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++ H + + G +P   +Y  I+  + +R + D A  FF+ M      PN   Y +L
Sbjct: 571 EEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVIL 630

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I    R G   EA   L E+   G+
Sbjct: 631 IEGLAREGLLKEARYVLSELCSRGV 655



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 3/288 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    + +  T ++II    +   VD+A ++ N+ +++  Q   + Y ++L  L
Sbjct: 193 KVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGL 252

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  K +     L   M+    VP++ T+ +LV  +C  G +  A E L  MS+ G     
Sbjct: 253 CAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANT 312

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++++  +   G ++ A + +N M   G   D  ++ ++++ +C++G  E   E+   
Sbjct: 313 TLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNE 372

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +     +  T+   I  + + G+ID+A  L+  + E G       Y  ++ G   +G+
Sbjct: 373 MVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGR 432

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            D A   F+ +  +   PN   YT L+T      R   AA  L EM +
Sbjct: 433 VDSALELFNSLPCE---PNTITYTTLLTGLCHAERLDAAAELLAEMMQ 477



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G   +A  V            V  YN+L+   C       A  LI  M    
Sbjct: 76  LIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---P 132

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+   C  G++ +A   L +M  +   P V    +L++ +  +     A 
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAM 192

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM---------------YYSVCKLG 187
           +++++M  +G   ++ T+N +I  +C+   V+   ++               Y +V K G
Sbjct: 193 KVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLK-G 251

Query: 188 LCA-----DVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           LCA     DV                 T+ +L+    + GM++ A  +L  + E G    
Sbjct: 252 LCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTAN 311

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
            +L   +I  + ++G+ DDAF F + M   G  P+   YT ++    R GR+ +A   L 
Sbjct: 312 TTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLN 371

Query: 287 EMTEMGLTP 295
           EM      P
Sbjct: 372 EMVRKNCPP 380



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 3/265 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L   L+  LC       A  ++R     G   D   Y  LV  +C  G++  A+  + 
Sbjct: 70  VYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIA 129

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P       L++GL + G +  A  +++ M+++     + T+  L+E +CKS 
Sbjct: 130 SMP---VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSS 186

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                +++   +   G   ++ TY ++I  + +   +D+A ++L+ L   G +P    Y 
Sbjct: 187 GFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYT 246

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG+    +++D    F EM      PN   + ML+    RGG    A   L  M+E 
Sbjct: 247 TVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEH 306

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G T  +   ++V + +   G+ D A
Sbjct: 307 GCTANTTLCNIVINSICKQGRVDDA 331



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 3/233 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+ R   +G  PD      L+   C  G+  +A   L+     G    V   + LV 
Sbjct: 54  AARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVA 113

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G L++A++++  M       D  T+  LI  +C  G V   + +   + +     
Sbjct: 114 GYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQP 170

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY +L+ AV K+    +A ++L  +   G  P    Y  II GM R  + DDA    
Sbjct: 171 SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQIL 230

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           + +   G  P+   YT ++       R+ +      EM E    P    FD++
Sbjct: 231 NRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDML 283



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 9/185 (4%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A ++V +   +G   D+     LI  +C+ G       +  +    G   DV  Y  
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCFFSEMK 254
           L+    + G +D A RL+ ++      P P     Y P+I+G+  RG+  DA     +M 
Sbjct: 111 LVAGYCRYGRLDAARRLIASM------PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDML 164

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +   P+   YT+L+    +   F +A   L EM   G TP    ++++ +G+    + D
Sbjct: 165 RRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVD 224

Query: 315 LAEKI 319
            A +I
Sbjct: 225 DARQI 229



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 3/205 (1%)

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           + EA   ++  + +G  P V     L++ L   G    A +++      G  +D+  +N+
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           L+   C+ G ++    +  S   + +  D  TY  LI  +   G + +A  LL +++   
Sbjct: 111 LVAGYCRYGRLDAARRLIAS---MPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P    Y  +++ + +   F  A     EM+ KG  PN   Y ++I    R  R  +A 
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDAR 227

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
             L  ++  G  P +  +  V  GL
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGL 252


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 2/283 (0%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           +F++  +      ++ YN+LL  LC       A  L   MI +G  PD  TY ILVN  C
Sbjct: 396 LFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G +  AQEF  EM  +G           + G L  G    A  +  +M+ +GF  DL 
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLI 515

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +N +++ +CK G +E   E+   +   G+  D  TY  +I A  + G + +   + + +
Sbjct: 516 IYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEM 575

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +  G  P    Y  +I G   +G+ + AF +FSEM+ KG  PN   Y  LI    +  R 
Sbjct: 576 LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRM 635

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            +A N+  EM E G+ P    + ++ +  +NC   +  E + L
Sbjct: 636 DQAYNFFAEMVEKGIFPNKYSYTILIN--ENCNMGNWQEALSL 676



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 141/346 (40%), Gaps = 36/346 (10%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K   L VS  T + +I  +   G++  A+ +  +         V  YNS ++ LC++
Sbjct: 294 EMLKT-GLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKL 352

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A   +  M+    +PD  +Y  L+  +C  G + +A     E+      P +   
Sbjct: 353 GRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTY 412

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYY 181
           + L+ GL   G LE A+Q+  +MI +G   D+ T+  L+   CK G +    EF  EM +
Sbjct: 413 NTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLH 472

Query: 182 SVCKL-------------------------------GLCADVSTYKILIPAVSKAGMIDE 210
              +L                               G   D+  Y +++  + K G ++E
Sbjct: 473 EGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEE 532

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LL  +V DG  P    Y  II      G+       F EM  KG  P+   YT+LI 
Sbjct: 533 ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                GR   A  Y  EM E G+ P    ++ + +GL    + D A
Sbjct: 593 GHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 132/304 (43%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS + L L+I  + K  +V+  + VF+K         V   N +L  L +  L   A  +
Sbjct: 162 VSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEV 221

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R M   G  P   TY  L++++C  GK+++  + L EM  +G  P     ++L+ GL  
Sbjct: 222 YRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSK 281

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G  E AK ++ +M+K G  +   T+N LI      G +   + +   +   G    V+T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y   I  + K G + +A + L +++ +   P    Y  +I G  R G    AF  F E++
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
                P    Y  L+    R G    A    VEM   G+ P    + ++ +G    G   
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLS 461

Query: 315 LAEK 318
           +A++
Sbjct: 462 MAQE 465



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           L+  AVEV+     F  +  ++ YN+LL + C+         L+  M R+G  P+  TY 
Sbjct: 214 LMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +L+N     G+  +A+  + EM   G        + L+ G  N G L  A  +  +M+ +
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G    + T+NS I  +CK G +   ++    +    L  DV +Y  LI    + G + +A
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           F L   L      P    Y  ++ G+ R+G+ + A     EM  +G  P+   YT+L+  
Sbjct: 394 FLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453

Query: 272 CGRGGRFVEAANYLVEMTEMGL 293
             + G    A  +  EM   GL
Sbjct: 454 SCKMGSLSMAQEFFDEMLHEGL 475



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 38/333 (11%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K +E+   M  + +  +  T + +++ + K G V   +++ ++     C    + YN 
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  L +   F  A  LI  M++ G      TY  L+  + + G + EA    +EM  KG
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--------------------- 156
            +P V   +  + GL   G +  A Q ++ M+    + D                     
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 394

Query: 157 --------------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                         + T+N+L++ +C+ GE+E   ++   +   G+  D+ TY IL+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +  A      ++ +G +     YA  I G  + G    AF    EM  KG PP+ 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +Y +++    + G   EA+  L +M   G+ P
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIP 547



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 122/288 (42%), Gaps = 37/288 (12%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  ++P   T ++++    K G +  A E F++      +     Y + +    ++    
Sbjct: 437 NEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTS 496

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A++L   M+ KGF PD   Y ++V+  C  G + EA E LQ+                 
Sbjct: 497 RAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK----------------- 539

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                             M+  G + D  T+ S+I    ++G +    E++Y +   GL 
Sbjct: 540 ------------------MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLT 581

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY +LI   +  G ++ AF     + E G  P    Y  +I G+ +  + D A+ F
Sbjct: 582 PSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNF 641

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           F+EM  KG  PN+  YT+LI      G + EA +   +M + G+ P S
Sbjct: 642 FAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 97/186 (52%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +++YN ++  LC++     A  L+++M+  G +PD  TY  +++A   +G++R+ +E   
Sbjct: 514 LIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFY 573

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P V    +L+ G    G LE A    ++M ++G + ++ T+NSLI  +CK  
Sbjct: 574 EMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVR 633

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++     +  + + G+  +  +Y ILI      G   EA  L   +++ G +P    ++
Sbjct: 634 RMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHS 693

Query: 232 PIIKGM 237
            ++K +
Sbjct: 694 ALLKQL 699



 Score = 54.3 bits (129), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 14/206 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    ++G +    E+F +  +      V+ Y  L+           A+     M
Sbjct: 551 TYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +P+  TY  L+N  C   +M +A  F  EM +KG  P      +L+    N G  
Sbjct: 611 QEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M+ +G   D  T ++L++ + K              CKL      ST    
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGKD-------------CKLQAVHGTSTMPTA 717

Query: 199 -IPAVSKAGMIDEAFRLLHNLVEDGH 223
            +  +S+      A   + ++ E+GH
Sbjct: 718 KVDLLSQTVGAATALTSVSSIAENGH 743


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 146/309 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K +   ++    + +I+ FGK G+V+  + V+ K      +  +  YN L+  L     
Sbjct: 178 IKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMF 237

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M      PD  TY  ++  +C +G+ ++A E L++M  +G          
Sbjct: 238 VDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMT 297

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++Q         S   +  +M ++G  +    F+ +I  +CK G++     ++ ++ + G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V+ Y +LI   +K+G +++A RLLH ++++G KP    Y+ ++ G+ + G+ ++A 
Sbjct: 358 SKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEAL 417

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +F   +  G   N   Y+ LI   G+ GR  EA     EM+E G T  S C++ + D  
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477

Query: 308 KNCGKHDLA 316
               K D A
Sbjct: 478 TKHRKVDEA 486



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 2/313 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    + V P   SL+I    K G ++    VF        +  V +Y  L+    +   
Sbjct: 318 MDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGS 377

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ RMI +GF PD  TY+++VN  C +G++ EA ++       G          
Sbjct: 378 VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSS 437

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG ++ A+++  +M ++G   D   +N+LI+   K  +V+  + ++  + +  
Sbjct: 438 LIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEE 497

Query: 188 LCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            C   V TY IL+  + K    +EA +L   +++ G  P  + +  +  G+   G+   A
Sbjct: 498 GCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARA 557

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                E+   G   +     M+ T+C + GR  EA      +TE G     R   ++ + 
Sbjct: 558 CKILDELAPMGVILDAACEDMINTLC-KAGRIKEACKLADGITERGREVPGRIRTVMINA 616

Query: 307 LKNCGKHDLAEKI 319
           L+  GK DLA K+
Sbjct: 617 LRKVGKADLAMKL 629



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 149/350 (42%), Gaps = 40/350 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + ++        VD+A  VF    +   +  ++ YN+++   C+   
Sbjct: 213 MKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQ 272

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +R M  +G   DK TY  ++ A  +           QEM +KG   P     L
Sbjct: 273 TQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSL 332

Query: 128 LVQGL-----LNAGY------------------------------LESAKQMVNKMIKQG 152
           ++ GL     LN GY                              +E A +++++MI +G
Sbjct: 333 VIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 392

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYKILIPAVSKAGMIDEA 211
           F  D+ T++ ++  +CK+G VE  ++ Y+  C+  GL  +   Y  LI  + KAG +DEA
Sbjct: 393 FKPDVVTYSVVVNGLCKNGRVEEALD-YFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEA 451

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            RL   + E G       Y  +I    +  + D+A   F  M+ +    ++ VYT  I +
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME-EEEGCDQTVYTYTILL 510

Query: 272 CG--RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  +  R  EA      M + G+TP + CF  ++ GL   GK   A KI
Sbjct: 511 SGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKI 560



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 126/287 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD    V ++   F     V   N+L+ +  ++ +      + R+M   G  P   TY  
Sbjct: 168 VDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNF 227

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N   S+  +  A+   + M      P +   + +++G   AG  + A + +  M  +G
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+ ++I+      +   CV +Y  + + G+      + ++I  + K G ++E +
Sbjct: 288 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGY 347

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +  N++  G KP  ++Y  +I G  + G  +DA      M  +G  P+   Y++++   
Sbjct: 348 TVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGL 407

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + GR  EA +Y       GL   S  +  + DGL   G+ D AE++
Sbjct: 408 CKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 2/218 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+++    S +I+  GK G VD A  +F + +   C +    YN+L+ A  + +    A 
Sbjct: 428 LAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAI 487

Query: 73  ALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL +RM  + G      TY IL++      +  EA +    M DKG  P       L  G
Sbjct: 488 ALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTG 547

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A ++++++   G +LD      +I T+CK+G ++   ++   + + G    
Sbjct: 548 LCLSGKVARACKILDELAPMGVILDAAC-EDMINTLCKAGRIKEACKLADGITERGREVP 606

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
                ++I A+ K G  D A +L+H+ +  G++   S+
Sbjct: 607 GRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSV 644



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 2/200 (1%)

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L  A  ++  + + +++ K  F + +   N+LI++  K G VE  + ++  + + G
Sbjct: 158 LVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENG 217

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY  L+  +  A  +D A R+   +     KP    Y  +IKG  + GQ   A 
Sbjct: 218 IEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAM 277

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +M+ +GH  ++  Y  +I  C     F        EM E G+      F LV  GL
Sbjct: 278 EKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGL 337

Query: 308 KNCGKHDLAEKIELLEVSLR 327
             C +  L E   + E  +R
Sbjct: 338 --CKEGKLNEGYTVFENMIR 355


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 38/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + L  +    + I++   K G  + A+++            V  YN+++   C+   
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP------- 120
                + +  MI KG  P+  TY   ++ +C +G+M+ A+    EM D G  P       
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 121 ----------------------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
                                        V+   +L+ GL   G L+ A  + ++++ +G
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D+ T+ SLI  +CK G+++   E++  +CK G+  ++ TY  LI  + K G I +A 
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKAR 707

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G       Y+ II G  +     +AF  F  MK+ G PP+  VY  LI  C
Sbjct: 708 ELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGC 767

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G   +A +  + M E G+   +  F+ + DG    GK  L E  +L+E
Sbjct: 768 CKAGNTEKALSLFLGMVEEGIAS-TPAFNALIDGFFKLGK--LIEAYQLVE 815



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + G V+    V        C   ++ Y+ ++  LC       A  L R M
Sbjct: 234 TYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSM 293

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD   YA L++ +C   +  E +  L EM   G  P       L+ G +    +
Sbjct: 294 ANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDI 353

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+  +M  +   L+  T+ +LI  +CK G++E   +++  +  +G+  D+ TY  L
Sbjct: 354 GGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCL 413

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +++A+ LL  + ++       +   I+ G+   G    A   F EM   G 
Sbjct: 414 IEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGL 473

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN  +YT ++    + GRF EA   L  M + GL+P   C++ V  G    GK
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 139/326 (42%), Gaps = 5/326 (1%)

Query: 1   MWKTIELM---KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  EL+   K  NL+ +      I+      G +  A E+F +  ++  +  +++Y +
Sbjct: 423 MEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTT 482

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  L +   F  A  ++  M  +G  PD   Y  ++  +C +GKM E + +L EM  KG
Sbjct: 483 IVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKG 542

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V      + G   AG +++A++   +M+  G   +      LI+  CK G      
Sbjct: 543 LKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAF 602

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             +  +   G+  DV T+ +LI  +SK G + EA  +   L++ G  P    Y  +I  +
Sbjct: 603 AKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNL 662

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G    AF    +M  KG  PN   Y  LI    + G   +A      + E GL   S
Sbjct: 663 CKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNS 722

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLE 323
             +  +  G   C   +L E  +L  
Sbjct: 723 VTYSTIIAGY--CKSANLTEAFQLFH 746



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 2/316 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    + ++  T   +I    K G ++ A ++F++ T    +  +  YN L+    +V
Sbjct: 361 EEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKV 420

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    AY L+  + ++    +      +VN  C  G +  A E  QEM   G  P +   
Sbjct: 421 QNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIY 480

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             +V+GL+  G  E A +++  M  QG   D+  +N++I   CK+G++E        +  
Sbjct: 481 TTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIA 540

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  +V TY   I    +AG +  A R    +++ G  P   +   +I G  + G    
Sbjct: 541 KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTK 600

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF  F  M  +G  P+   +++LI    + G+  EA     E+ + GL P    +  +  
Sbjct: 601 AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLIS 660

Query: 306 GLKNCGKHDLAEKIEL 321
            L  C + DL    EL
Sbjct: 661 NL--CKEGDLKAAFEL 674



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 137/306 (44%), Gaps = 2/306 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT + +IE + K   ++ A E+  +    N      +  +++  LC       A  L + 
Sbjct: 408 QTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQE 467

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI  G  P+   Y  +V      G+  EA + L  M D+G +P V   + ++ G   AG 
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E  K  + +MI +G   ++ T+ + I   C++GE++     +  +   G+  +      
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G   +AF     +++ G  P    ++ +I G+ + G+  +A   FSE+  KG
Sbjct: 588 LIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKG 647

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT LI+   + G    A     +M + G+ P    ++ + +GL  C   ++A+
Sbjct: 648 LVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGL--CKLGEIAK 705

Query: 318 KIELLE 323
             EL +
Sbjct: 706 ARELFD 711



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 133/305 (43%), Gaps = 9/305 (2%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL---LFALCEVKLFHGAYALIRRM 78
           ++I+ + K G ++ AV VF           +   NSL   L     V+LF   Y    + 
Sbjct: 168 ILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVY----KG 223

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +    VPD  TY  L+NA+C  GK+ E +  L +M +KG  P +    +++ GL  AG +
Sbjct: 224 MLGAIVPDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDV 283

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   M  +G + D   + +LI+  C+         M   +  +GL  D   Y  L
Sbjct: 284 DEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTAL 343

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   I  AF++   +     K     Y  +I G+ + G  + A   FSEM + G 
Sbjct: 344 INGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGI 403

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    +     +A   L+E+ +  LT  +     + +GL +CG  DL   
Sbjct: 404 KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCG--DLTRA 461

Query: 319 IELLE 323
            EL +
Sbjct: 462 NELFQ 466



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 5/311 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +  A E+F+        +  + Y++++   C+      A+ L   M
Sbjct: 689 TYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM 748

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD   Y  L++  C +G   +A      M ++G        + L+ G    G L
Sbjct: 749 KLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKL 807

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+V  M+      +  T+  LIE  C  G ++   +++  + K  +  +V TY  L
Sbjct: 808 IEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSL 867

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   ++ G   E F L   +V  G KP    ++ ++    + G +  A     +M  +G 
Sbjct: 868 LHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGV 927

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT-PISRCFDLVTDGLKNCGKHDLAE 317
              + +YT+LI    +     E    L E+ + G    ++ C  LV       G+ D  E
Sbjct: 928 NVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVC-CFHRAGRTD--E 984

Query: 318 KIELLEVSLRS 328
            + +LE  +RS
Sbjct: 985 ALRVLESMVRS 995



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 87/205 (42%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            S    + +I+ F K G +  A ++       +     + Y  L+   C V     A  L
Sbjct: 789 ASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQL 848

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M ++  +P+  TY  L++ +   G+  E      EM  +G  P      ++V   L 
Sbjct: 849 FMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLK 908

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G    A ++V+ M+ +G  +    +  LI+ +CK   +   +++   V K G    ++T
Sbjct: 909 EGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLAT 968

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLV 219
              L+    +AG  DEA R+L ++V
Sbjct: 969 CGTLVCCFHRAGRTDEALRVLESMV 993



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 85/184 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M   +++ +  T +++IE     G +  A ++F +    N    VL Y SLL  
Sbjct: 811 YQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHG 870

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
              +      ++L   M+ +G  PD   ++++V+A    G   +A + + +M  +G N  
Sbjct: 871 YNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVC 930

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+  L     L    ++++++ KQG  L L T  +L+    ++G  +  + +  
Sbjct: 931 KNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLE 990

Query: 182 SVCK 185
           S+ +
Sbjct: 991 SMVR 994


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 142/304 (46%), Gaps = 3/304 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK +  S S  T + II+ + K G +  A  +  +  A       + +N L+   C 
Sbjct: 252 VEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCR 311

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A  +   M R+G  P+  TY  L+N  CS+GK+ EA     +MS  G  P V  
Sbjct: 312 DENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVT 371

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G      L+ A++M++ + K+G   ++ TFN+LI+   K+G ++    +   + 
Sbjct: 372 YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMML 431

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+C +VSTY  LI    + G + EA +L   +  +G K     Y  ++  + ++G+  
Sbjct: 432 DTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETR 491

Query: 245 DAFCFFSEMKI---KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            A     EM +   KG   N   Y +LI      G+  EA   L EM E GL P    +D
Sbjct: 492 KAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYD 551

Query: 302 LVTD 305
           ++ D
Sbjct: 552 ILRD 555



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 152/319 (47%), Gaps = 5/319 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + V+  T  ++I    K G    A +V     A+     V+ YN+++   C+      A 
Sbjct: 225 IGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKAD 284

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL++ M+ K   P++ T+ IL++ +C    +  A++  +EM  +G  P V   + L+ GL
Sbjct: 285 ALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGL 344

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G L+ A  + +KM   G   ++ T+N+LI   CK   ++   EM   + K GL  +V
Sbjct: 345 CSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNV 404

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI A  KAG +D+AF L   +++ G  P  S Y  +I G  R G   +A     E
Sbjct: 405 ITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKE 464

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM---GLTPISRCFDLVTDGLKN 309
           M+  G   +   Y +L+    + G   +A   L EMT M   G       ++++  G  N
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCN 524

Query: 310 CGKHDLAEKI--ELLEVSL 326
            GK + A ++  E+LE  L
Sbjct: 525 KGKLEEANRLLNEMLEKGL 543



 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 153/312 (49%), Gaps = 9/312 (2%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAV-EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           LS +P  +SL+ E  G+ G+V++   E+  +    N    V+ ++ ++  LC+V  F  A
Sbjct: 195 LSCNPMLVSLVKE--GRIGVVESVYKEMIRRRIGVN----VVTFDVVINGLCKVGKFQKA 248

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++  M   GF P   TY  +++ +C +GKM +A   L+EM  K  +P     ++L+ G
Sbjct: 249 GDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDG 308

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
                 + +AK++  +M +QG   ++ T+NSLI  +C +G+++  + +   +  +GL  +
Sbjct: 309 FCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPN 368

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  LI    K  M+ EA  +L ++ + G  P    +  +I    + G+ DDAF   S
Sbjct: 369 VVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRS 428

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M   G  PN   Y  LI    R G   EA     EM   GL      ++++ D L  C 
Sbjct: 429 MMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDAL--CK 486

Query: 312 KHDLAEKIELLE 323
           K +  + + LL+
Sbjct: 487 KGETRKAVRLLD 498



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 120/246 (48%), Gaps = 3/246 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M+   L  +  T + +I     +G +D A+ + +K +    +  V+ YN+L+   
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ K+   A  ++  + ++G  P+  T+  L++A+  +G+M +A      M D G  P V
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G    G ++ A+++  +M   G   DL T+N L++ +CK GE    V +   
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 183 VC---KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +    K G  A++ TY +LI      G ++EA RLL+ ++E G  P  + Y  +   M  
Sbjct: 500 MTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMME 559

Query: 240 RGQFDD 245
           +G   D
Sbjct: 560 KGFIPD 565



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 131/276 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           + +++  + K+G +D A+E F++   +  +   L  N +L +L +        ++ + MI
Sbjct: 162 VDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMI 221

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+    +  T+ +++N  C  GK ++A + +++M   GF+P V   + ++ G   AG + 
Sbjct: 222 RRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMF 281

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +M+ +    +  TFN LI+  C+   V    +++  + + GL  +V TY  LI
Sbjct: 282 KADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLI 341

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +   G +DEA  L   +   G KP    Y  +I G  ++    +A     ++  +G  
Sbjct: 342 NGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLA 401

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           PN   +  LI   G+ GR  +A      M + G+ P
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 3/203 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K  ++  A E+ +          V+ +N+L+ A  +      A+ L   M
Sbjct: 371 TYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMM 430

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY  L+  +C  G ++EA++  +EM   G    +   ++LV  L   G  
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGET 490

Query: 139 ESAKQMVNKMI---KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             A +++++M    K+G   ++ T+N LI+  C  G++E    +   + + GL  + +TY
Sbjct: 491 RKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTY 550

Query: 196 KILIPAVSKAGMIDEAFRLLHNL 218
            IL   + + G I +    L+N+
Sbjct: 551 DILRDEMMEKGFIPDIDGHLYNV 573



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ---QCVLLYNSLLFALCE 64
           M+   L     T +++++   K G    AV + ++ T    +     ++ YN L+   C 
Sbjct: 465 MEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCN 524

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M+ KG +P++ TY IL +                EM +KGF P + G
Sbjct: 525 KGKLEEANRLLNEMLEKGLIPNRTTYDILRD----------------EMMEKGFIPDIDG 568


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 156/346 (45%), Gaps = 40/346 (11%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           SV+P   T S +I  F K G +D A E+  +  T       V+ Y S++  LC       
Sbjct: 72  SVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDR 131

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE-MSDKGFNPPVRGRDLLV 129
           A  ++R M  KG  PDK T++ L+  WC++ K+ EA +  +E ++   + P V     L+
Sbjct: 132 ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALI 191

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G   +G LE A +M+  M  +  V ++ T++SL+  +CK+G+++  ++++  +   G  
Sbjct: 192 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 251

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY  LI  +  A  +D A  L+  +      P    Y  ++ G  R G+ ++A   
Sbjct: 252 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQL 311

Query: 250 FSEMKIKGHPPNRPVYTMLI--------------------TMCG---------------- 273
           F EM  K   P+R  YT L+                    T  G                
Sbjct: 312 FKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 371

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           R  RFVEAA ++ EM    + P +  +  + DGL   G+ D A ++
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEV 417



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 12/308 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+ F K   +  A+  F K   F        YN ++  LC+ +L   AY +++ M
Sbjct: 9   TWTIIIDGFCKANQLKQALACFEKMREFVAPN-ERTYNVVVNGLCKARLTSKAYEVLKEM 67

Query: 79  IR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAG 136
              K   PD  TY+ ++N +C  G+M  A E L+EM +  G  P V     +V GL   G
Sbjct: 68  RDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDG 127

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCADVSTY 195
            ++ A +MV +M  +G   D  TF++LI   C + +V+  +++Y  +        DV TY
Sbjct: 128 KMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTY 187

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEM 253
             LI    K+G +++A ++L   V +G K  P++  Y+ ++ G+ + G  D A   F  M
Sbjct: 188 TALIDGFCKSGNLEKAMKMLG--VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 245

Query: 254 KIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCG 311
             KG  PN   YT LI  +C      V+AA  L+ EMT     P +  ++ + DG    G
Sbjct: 246 TSKGCVPNVVTYTTLIHGLC--AAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLG 303

Query: 312 KHDLAEKI 319
           + + A+++
Sbjct: 304 RIEEAKQL 311



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 7/309 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G ++ A+++        C   V+ Y+SLL  LC+      A  L RRM
Sbjct: 186 TYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRM 245

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG VP+  TY  L++  C++ K+  A+  + EM+     P     + L+ G    G +
Sbjct: 246 TSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRI 305

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE---FCVEMYYSVCKLGLCADVSTY 195
           E AKQ+  +M  +  + D  T+  L+   C +  +E   F +E   +    G+  DV TY
Sbjct: 306 EEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAA--GIDPDVVTY 363

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            I++   S+A    EA   +  ++     P    Y+ +I G+ + G+ D A      M  
Sbjct: 364 SIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVN 423

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           K   P+   +  +I    R G   EA   LV M   GL P    +  + +G    G+ ++
Sbjct: 424 KRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEI 483

Query: 316 AEKIELLEV 324
           A   EL EV
Sbjct: 484 A--YELFEV 490



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     VD A  + ++ TA  C    + YN+LL   C +     A  L + M  K  +
Sbjct: 262 HGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCL 321

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           PD+ TY  LV  +C++ ++ EA+  L+ M +  G +P V    ++V G   A     A +
Sbjct: 322 PDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAE 381

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
            + +MI +    +  T++SLI+ +CK+G V+  +E+  ++    +   V T+  +I A+ 
Sbjct: 382 FIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALC 441

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           + G +DEA++LL  +   G +P    Y  +++G  R G+ + A+  F  M+
Sbjct: 442 RLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 87/191 (45%), Gaps = 7/191 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M   N++ +  T S +I+   K G VD+A+EV         +  V  +NS++ ALC 
Sbjct: 383 IQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCR 442

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP---- 120
           +     A+ L+  M   G  P   TY  L+  +  +G+M  A E  + M  K        
Sbjct: 443 LGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAA 502

Query: 121 ---PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
              P +    L++GL  A  ++ A  +V ++  +      E   ++++ + ++G  E   
Sbjct: 503 NLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAG 562

Query: 178 EMYYSVCKLGL 188
           ++  S+ K+GL
Sbjct: 563 KLINSISKVGL 573



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 7/163 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++  + +      A E   +  A N     + Y+SL+  LC+      A  +++ M
Sbjct: 362 TYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNM 421

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   P   T+  ++ A C  G M EA + L  M+  G  P +     L++G    G +
Sbjct: 422 VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRM 481

Query: 139 ESAKQMVNKM-------IKQGFVLDLETFNSLIETICKSGEVE 174
           E A ++   M            ++  + F++LI  +CK+ E++
Sbjct: 482 EIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREID 524


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 128/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA +   EM DKG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           SA +   +M+ Q F+ DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 SAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF L   +V++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    +      AA  L EM   G  P
Sbjct: 379 PDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 120/250 (48%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + + G +D   ++ N   A   Q  V  Y+ L+  LC+    + 
Sbjct: 165 WGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNE 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M+ KG VP+  T+  L++  C +GK+  A E  ++M  + F P +   + L+ 
Sbjct: 225 ANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G+++   E+  ++ K  +  
Sbjct: 285 GLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++     A    
Sbjct: 345 DDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLL 404

Query: 251 SEMKIKGHPP 260
            EM+ +GH P
Sbjct: 405 KEMQRQGHVP 414



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 120/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + +  +    M
Sbjct: 138 FFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     +  A  + N+M+ +G V +  TF +LI+  CK+G+V
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E Y  +       D+ TY  LI  + K G + +A  LL  +   G KP    Y  +
Sbjct: 258 DSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR  +A   L EM  +GL
Sbjct: 318 IDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+    +LL+
Sbjct: 378 KPDNGTYTMIINEF--CKKEDVKTAAKLLK 405



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G V +A+E F        +        +L  L ++K F   +   + ++
Sbjct: 69  FSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G++  AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  ++    +++  +   GL  +  T+  LI
Sbjct: 189 QGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A      ++     P    Y  +I G+ ++G    A     EM++KG  
Sbjct: 249 DGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A      M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+NA+  SG +R+A E  +   +     P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLINAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK GE+     ++ S+ K GL   V ++  L+    + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D+ F+L + +   G +P    Y+ +I G+ +  + ++A   F+EM  KG  PN   +
Sbjct: 185 GDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T LI    + G+   A     +M      P    ++ +  GL  C K DL +  +LL+
Sbjct: 245 TTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGL--CKKGDLKQAQDLLD 300



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L     T + +I+   K G +D+A E+       + +   + Y +L+  LC+
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  PD  TY +++N +C    ++ A + L+EM  +G  P V
Sbjct: 359 EGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCV 416


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 141/311 (45%), Gaps = 21/311 (6%)

Query: 22  LIIEEFGKHGLVDNAVEVFNK-----CTAFNCQQC---------------VLLYNSLLFA 61
           LI +E  K GL   AV  FN      C + N ++                V  Y++L+  
Sbjct: 253 LIFDEIRKTGLQPTAVS-FNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDG 311

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L + M  +G VP+  T+  L+N  C +G++  A E  Q+M  KG    
Sbjct: 312 LCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKAD 371

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L+ GL   GY   A++ V +M K+G + D  T+ +L++  CK G++E  +EM  
Sbjct: 372 LVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRK 431

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+  D   +  +I  + + G I +A R L  ++  G KP    Y  ++ G  ++G
Sbjct: 432 EMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKG 491

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                F    EM+  GH P    Y +L+    + G+   A   L  M  +G+ P    ++
Sbjct: 492 DVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYN 551

Query: 302 LVTDGLKNCGK 312
           ++  G    GK
Sbjct: 552 ILLQGHCKHGK 562



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 136/317 (42%), Gaps = 2/317 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L K +NL +       ++E   K      A+E + +         V  +N L+  LC+  
Sbjct: 187 LTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEG 246

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  +   + + G  P   ++  L+N +C SG + E       M +    P V    
Sbjct: 247 KVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYS 306

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ GL     LE A  +  +M  +G V +  TF +LI   CK+G V+  +E+Y  +   
Sbjct: 307 ALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTK 366

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL AD+  Y  LI  + K G   EA + +  + + G  P    Y  ++ G  + G  + A
Sbjct: 367 GLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELA 426

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EM  +G   +   +T +I+   R G+ V+A   L EM   GL P    + +V DG
Sbjct: 427 LEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDG 486

Query: 307 LKNCGKHDLAEKIELLE 323
              C K D+    +LL+
Sbjct: 487 F--CKKGDVKMGFKLLK 501



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 126/275 (45%), Gaps = 3/275 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K   +++A  +F +          + + +L+   C+      A  + ++M
Sbjct: 304 TYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQM 363

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y  L++  C  G  REA++F+ EM+ +G  P       L+ G    G L
Sbjct: 364 FTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDL 423

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +M  +M+K+G  LD   F ++I  +C+ G++         + + GL  D  TY ++
Sbjct: 424 ELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMV 483

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +   F+LL  +  DGH P    Y  ++ G+ ++GQ  +A    + M   G 
Sbjct: 484 MDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGV 543

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            P+   Y +L+    + G+  +  N     TEMGL
Sbjct: 544 VPDDITYNILLQGHCKHGKLGDFQNV---KTEMGL 575



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 97/187 (51%), Gaps = 3/187 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G ++ A+E+  +      Q   + + +++  LC       A   +R M
Sbjct: 409 TYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREM 468

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD  TY ++++ +C  G ++   + L+EM   G  P V   ++L+ GL   G +
Sbjct: 469 LRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQV 528

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  ++N M+  G V D  T+N L++  CK G++    +      ++GL +D ++Y+ L
Sbjct: 529 KNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLG---DFQNVKTEMGLVSDYASYRSL 585

Query: 199 IPAVSKA 205
           +  +SKA
Sbjct: 586 LHELSKA 592



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 119/279 (42%), Gaps = 43/279 (15%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG +     +  L++ +   G + +A +  +         P  G   L++ ++       
Sbjct: 156 KGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMV 215

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +   +++  G+  ++ TFN L+  +CK G+V+    ++  + K GL     ++  LI 
Sbjct: 216 ALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLIN 275

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              K+G ++E FRL   +V +  + FP +  Y+ +I G+ +  Q +DA   F EM  +G 
Sbjct: 276 GYCKSGNLEEGFRL--KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGL 333

Query: 259 PPNRPVYTMLIT------------------------------------MCGRGGRFVEAA 282
            PN   +T LI                                     +C +GG F EA 
Sbjct: 334 VPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLC-KGGYFREAR 392

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            ++ EMT+ GL P    +  + DG  +C + DL   +E+
Sbjct: 393 KFVGEMTKRGLIPDKFTYTTLLDG--SCKEGDLELALEM 429


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 128/251 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++++   K G+V  A  VF   T    +  +  YN+L+   C  +L + A  +   M
Sbjct: 300 TLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+G  P   +Y IL+N +C S +M EA+  L EM  K  NP       L+QGL   G  
Sbjct: 360 IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRP 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M   G + +L T++ L++  CK G ++  +++  S+ +  L  ++  + IL
Sbjct: 420 KEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTIL 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG ++ A  L   L  DG +P    Y  +IKG+ + G  D+A+  F +M+  G 
Sbjct: 480 IEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF 539

Query: 259 PPNRPVYTMLI 269
            PN   Y ++I
Sbjct: 540 LPNSCSYNVMI 550



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 151/319 (47%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L + P   T + +I      G +  AVE+FN+      +  V+ YN+++  LC+
Sbjct: 146 LGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCK 205

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  + ++M + G  PD  TY  ++++ C    + +A EFL EM D+G  P V  
Sbjct: 206 TGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFT 265

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + +V G    G L  A ++  +M+ +  + D  T   L++ +CK G V     ++ ++ 
Sbjct: 266 YNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMT 325

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  ++STY  L+       +++EA ++   ++  G  P    Y  +I G  +  + D
Sbjct: 326 EKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMD 385

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    +EM  K   P+   Y+ L+    + GR  EA N   EM   GL P    + ++ 
Sbjct: 386 EAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILL 445

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DG   C    L E ++LL+
Sbjct: 446 DGF--CKHGHLDEALKLLK 462



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G    AV+VF K     C+  V+ YN+++ +LC+ +L + A   +  M+ +G
Sbjct: 199 IINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRG 258

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  +V+ +C  G++ EA    +EM  +   P      +LV GL   G +  A+
Sbjct: 259 IPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEAR 318

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   M ++G   ++ T+N+L++  C    +    +++  + + G    V +Y ILI   
Sbjct: 319 LVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGF 378

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K+  +DEA  LL  +      P    Y+ +++G+ + G+  +A   F EM   G  PN 
Sbjct: 379 CKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNL 438

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y++L+    + G   EA   L  M E  L P      ++ +G+   GK ++A+++
Sbjct: 439 VTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKEL 495



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 152/341 (44%), Gaps = 39/341 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K  LV++A+E  ++         V  YN ++   C +   + A  L + M
Sbjct: 230 TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  T  ILV+  C  G + EA+   + M++KG  P +   + L+ G      +
Sbjct: 290 VGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLM 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYY------------- 181
             AK++   MI+QG    + ++N LI   CKS  ++       EMY+             
Sbjct: 350 NEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 409

Query: 182 ------------------SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                              +C  GL  ++ TY IL+    K G +DEA +LL ++ E   
Sbjct: 410 MQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKL 469

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    +  +I+GMF  G+ + A   FS++   G  P    YT++I    + G   EA +
Sbjct: 470 EPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYD 529

Query: 284 YLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
              +M + G  P S  ++++  G L+N    D +  I L++
Sbjct: 530 LFRKMEDDGFLPNSCSYNVMIQGFLQN---QDSSTAIRLID 567



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 123/293 (41%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F K       V + N+   F     V   N L+  LC +     A +++ +M + G  P 
Sbjct: 98  FAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPT 157

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             T+  L+N  C+ GK++EA E   EM  +G  P V   + ++ GL   G    A  +  
Sbjct: 158 ASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFK 217

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           KM + G   D+ T+N++I+++CK   V   +E    +   G+  +V TY  ++      G
Sbjct: 218 KMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILG 277

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            ++EA RL   +V     P       ++ G+ + G   +A   F  M  KG  PN   Y 
Sbjct: 278 QLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYN 337

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            L+          EA      M   G  P    ++++ +G     + D A+ +
Sbjct: 338 ALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSL 390



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 139/295 (47%), Gaps = 2/295 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  F +    N +  V  +   L +  + K +    +L  +M   G   +  +  +
Sbjct: 69  IDDALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNV 128

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C    +  A   L +M   G +P     + L+ GL N G ++ A ++ N+M+++G
Sbjct: 129 LINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRG 188

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ ++N++I  +CK+G     V+++  + + G   DV TY  +I ++ K  ++++A 
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  +++ G  P    Y  ++ G    GQ ++A   F EM  +   P+    T+L+   
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGL 308

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            + G   EA      MTE G+ P    ++ + DG   C +  + E  ++ E+ +R
Sbjct: 309 CKEGMVSEARLVFETMTEKGVEPNISTYNALMDGY--CLQRLMNEAKKVFEIMIR 361



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 101/209 (48%), Gaps = 2/209 (0%)

Query: 7   LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L + Y+ +++P T+  S +++   + G    A+ +F +  ++     ++ Y+ LL   C+
Sbjct: 391 LAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCK 450

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L++ M  K   P+   + IL+     +GK+  A+E   ++   G  P +R 
Sbjct: 451 HGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRT 510

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             ++++GLL  G  + A  +  KM   GF+ +  ++N +I+   ++ +    + +   + 
Sbjct: 511 YTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 570

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                A++ST+++L+   S+  +I +  R
Sbjct: 571 GKRFSANLSTFQMLLDLESQDEIISQFMR 599


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 3/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K  +++ A E+F++         V+  N+L+  +C+    +GA      M
Sbjct: 418 TYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEM 477

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   +  TY  L+ A+C+   + +A E   EM + G +P       L+ GL  AG L
Sbjct: 478 QGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKL 537

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++KM + GF  D+ +FN LI   C+  +++   EM   +   G+  D  TY  L
Sbjct: 538 DRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTL 597

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK G    A RL+  +V++G  P    Y  +I      G  D+A   F +M     
Sbjct: 598 ISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK 657

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PPN  +Y +LI    R  +   A + + +M   G+ P +  F+ +  GL+   K+ L++
Sbjct: 658 VPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQE--KNWLSK 715

Query: 318 KIELLE 323
             EL++
Sbjct: 716 AFELMD 721



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 1/295 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +++   KHG ++ AVE FN+      +   + Y +L+ A C V     A  L   M
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEM 512

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD   Y  L++    +GK+  A   L +M + GF+P +   ++L+ G      L
Sbjct: 513 LEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKL 572

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M+ +M   G   D  T+N+LI    K+G+      +   + K GL   V TY  L
Sbjct: 573 DEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGAL 632

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPS-LYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I A    G +DEA ++  ++      P  + +Y  +I  + R+ Q D A     +MK+KG
Sbjct: 633 IHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKG 692

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN   +  +           +A   +  MTE    P     +++T+ L   G+
Sbjct: 693 VKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGE 747



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/294 (27%), Positives = 137/294 (46%), Gaps = 6/294 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-----CTAFNCQQCVLLYNSLLFAL 62
           MK  ++  +  T  ++I    K   VD A+EVF K        F  +  V+ YN+L+  L
Sbjct: 331 MKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGL 390

Query: 63  CEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           C+V        L+ RM  +   +P+  TY  L++ +C +  +  A+E   +M+  G  P 
Sbjct: 391 CKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPN 450

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + LV G+   G +  A +  N+M  +G   +  T+ +LI   C    +E  +E++ 
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G   D   Y  LI  +S+AG +D A  +L  + E G  P    +  +I G  R+ 
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + D+A+    EM+  G  P+   Y  LI+   + G F  A   + +M + GL P
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVP 624



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 122/263 (46%), Gaps = 3/263 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +  T + +I  F     ++ A+E+F++     C    ++Y +L+  L +   
Sbjct: 477 MQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++ +M   GF PD  ++ +L+N +C   K+ EA E L+EM + G  P     + 
Sbjct: 537 LDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNT 596

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G   +A +++ KM+K+G V  + T+ +LI   C +G ++  ++++  +    
Sbjct: 597 LISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTS 656

Query: 188 -LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +   Y ILI ++ +   +D A  L+ ++   G KP  + +  + KG+  +     A
Sbjct: 657 KVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKA 716

Query: 247 FCFFSEMKIKGHPPNRPVYTMLI 269
           F     M    H  N    TM I
Sbjct: 717 FELMDRM--TEHACNPDYITMEI 737



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 3/165 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P   T + +I  F K G    A  +  K         V+ Y +L+ A C      
Sbjct: 584 NAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLD 643

Query: 70  GAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
            A  + R M     VP +   Y IL+N+ C   ++  A   + +M  KG  P     + +
Sbjct: 644 EAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAM 703

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            +GL    +L  A +++++M +     D  T   L E +   GE 
Sbjct: 704 FKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGET 748



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 133/318 (41%), Gaps = 16/318 (5%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K + + +S    +L+I  FG+  +VD +  V+N+      ++   + N L+  L      
Sbjct: 151 KSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCP--SRRLTHIRNILIDVLFRKGRV 208

Query: 69  HGAYALIRRMI--RKGFVPDKRTYAILVNAWCSSGKMREAQE------FLQEMSDKGFNP 120
             A  L+  M+  +  F P+  T  I+ +A     K+  A +       + + ++    P
Sbjct: 209 DDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFP 268

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  L+  L  +G  + A  +++ ++K G V++  + N+L+  + ++ E +    + 
Sbjct: 269 NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLL 328

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF---PSL--YAPIIK 235
             + ++ +  +V T+ ILI  + K   +DEA  +   +       F   P +  Y  +I 
Sbjct: 329 AEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLID 388

Query: 236 GMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           G+ + G+ ++       M+ +    PN   Y  LI    +      A     +M + G+ 
Sbjct: 389 GLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP 448

Query: 295 PISRCFDLVTDGLKNCGK 312
           P     + + DG+   G+
Sbjct: 449 PNVVTLNTLVDGMCKHGR 466



 Score = 38.1 bits (87), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T   +I  +  +G +D A+++F   ++ +      ++YN L+ +LC       A +L+  
Sbjct: 628 TYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDD 687

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG  P+  T+  +         + +A E +  M++   NP     ++L + L   G 
Sbjct: 688 MKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVG- 746

Query: 138 LESAK 142
            E+AK
Sbjct: 747 -ETAK 750


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  127 bits (318), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 4/309 (1%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P TL+   II    K  +VD A E+    ++  C+  ++ YN LL  L     +    
Sbjct: 239 LEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGE 298

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            LI  MI  G  P+  T++IL+   C  GK+ EA   L+ M +KG  P     D L+ G 
Sbjct: 299 KLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGF 358

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A + +  MI  G + D+  +N+++  +C++G+ +  +E++  + ++G   +V
Sbjct: 359 CREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNV 418

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           S+Y  L  A+  +G    A  ++  L+  G  P    Y  +I  + R G  D+A     +
Sbjct: 419 SSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVD 478

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+   + PN   Y +++    +  R  +A   L  MTE G  P    + L+ +G+   G 
Sbjct: 479 MQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGL 538

Query: 313 HDLAEKIEL 321
              AE +EL
Sbjct: 539 R--AEAMEL 545



 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 149/320 (46%), Gaps = 2/320 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ MK         T +++I  F   G +D A+E+F +    NC+  V+ Y  L+ A 
Sbjct: 159 RVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEAT 218

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   A  L+  M+ KG  PD  TY  ++   C    + +A E L+ +S +G  P +
Sbjct: 219 ILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDI 278

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++ LL+ G     ++++++MI  G   ++ T + LI T+C+ G+VE  V +  S
Sbjct: 279 ITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRS 338

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  D   Y  LI    + G +D A   L  ++ DG  P    Y  I+ G+ R G+
Sbjct: 339 MKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGK 398

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F ++   G PPN   Y  L +     G    A   ++++   G+ P    ++ 
Sbjct: 399 ADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNS 458

Query: 303 VTDGLKNCGKHDLAEKIELL 322
           +   L   G  D  E IELL
Sbjct: 459 LISCLCRDGMVD--EAIELL 476



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 130/268 (48%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+L+    +      A  ++ RM  +GF+PD  TY I++ ++CS GK+  A E  +
Sbjct: 138 VFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFE 197

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+      P V    +L++  +  G ++ A +++++M+ +G   D  T+N++I  +CK  
Sbjct: 198 ELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEM 257

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+   E+  S+   G   D+ TY IL+  +   G   E  +L+  ++  G KP    ++
Sbjct: 258 MVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHS 317

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + R G+ ++A      MK KG  P+   Y  LI    R GR   A  +L  M   
Sbjct: 318 ILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD 377

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    ++ +  GL   GK D A ++
Sbjct: 378 GCLPDIVNYNTIMAGLCRTGKADQALEV 405



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 160/362 (44%), Gaps = 47/362 (12%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN------- 56
           T + +KP + S+    +S I  E      V N  +V  + +A   Q  VL ++       
Sbjct: 16  TTQPLKPTSNSLHSTIVSCIRPELNDANKVRNPQKV--RVSAETRQTHVLSFDFKEVHLM 73

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            LL   C    ++ +   +  M+ KG+ PD      L+  + +S  + +A   ++ +   
Sbjct: 74  KLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERY 133

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V   + L+ G + A  LE+A +++++M  +GF+ D+ T+N +I + C  G+++  
Sbjct: 134 G-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLA 192

Query: 177 VEMYYSVCK-----------------------------------LGLCADVSTYKILIPA 201
           +E++  + K                                    GL  D  TY  +I  
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRG 252

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K  M+D+AF LL +L   G KP    Y  +++ +  RG++ +     SEM   G  PN
Sbjct: 253 MCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPN 312

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              +++LI    R G+  EA N L  M E GL P + C+D +  G    G+ DLA   E 
Sbjct: 313 VVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLA--TEF 370

Query: 322 LE 323
           LE
Sbjct: 371 LE 372



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   ++NA  V ++  +      V+ YN ++ + C       A  +   +++  
Sbjct: 144 LISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDN 203

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY IL+ A    G +  A + L EM  KG  P     + +++G+     ++ A 
Sbjct: 204 CEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAF 263

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++  +  +G   D+ T+N L+ T+   G+     ++   +  +G   +V T+ ILI  +
Sbjct: 264 ELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTL 323

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G ++EA  LL ++ E G KP    Y P+I G  R G+ D A  F   M   G  P+ 
Sbjct: 324 CRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDI 383

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             Y  ++    R G+  +A     ++ E+G  P    ++ +   L + G  
Sbjct: 384 VNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDR 434


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 127/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++  GK G    A+EVF+      C    ++YN L+  L +      A  L+  M
Sbjct: 119 TYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDM 178

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG +PD RTY I+++   S G+  +A  F   M  +  +P V   + L+ GL      
Sbjct: 179 NRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRT 238

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M     + DL TF +LI+T+ K+G +E  +E    + K+G   +   Y  L
Sbjct: 239 DEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNAL 298

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    ++G +D+ + L  +++E    P    Y  ++ G  RRG    A     EM  +GH
Sbjct: 299 ISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGH 358

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P    Y +LI      G+  +A     EM   G  P
Sbjct: 359 TPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGFNP 395



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 129/284 (45%), Gaps = 6/284 (2%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMRE 105
           +C   V+ YN+L+   C+      A  + RR+ ++G   P+  ++  LV   C   +  +
Sbjct: 6   DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATD 65

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A    QEM   G    V   + L+      G L  A+++++ M    FVLD+ T++ L++
Sbjct: 66  ALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMD 125

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            + K+G     +E++ ++ K G   D   Y +LI  + K G +DEA  LL ++   G  P
Sbjct: 126 ALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMP 185

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I  +   G+++ A+ FF  MK + H P+   Y  L+    +  R  EA +  
Sbjct: 186 DCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLF 245

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            EM      P    F  + D L   G+ + A     LE S R V
Sbjct: 246 DEMQANKCMPDLTTFGTLIDTLAKAGRMEDA-----LEQSARLV 284



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 129/282 (45%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G++  A  + +  TA      V  Y+ L+ AL +      A  +   M + G +PD   Y
Sbjct: 96  GMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVY 155

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L++     GK+ EA E L++M+ KG  P  R  ++++  L + G  E A      M +
Sbjct: 156 NVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKR 215

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    D+ T+N+L+  + K    +   +++  +       D++T+  LI  ++KAG +++
Sbjct: 216 RKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMED 275

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A      LV+ GH P   +Y  +I G  R GQ D  +  F +M      P+   YT+L+ 
Sbjct: 276 ALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVL 335

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              R G    A   L EM   G TP    ++++   L   G+
Sbjct: 336 GFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQ 377



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 1/293 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I  + K G  D A+++F +     +C+   + +++L+  LC++     A A+ + M+  
Sbjct: 17  LIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGA 76

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G   D      L++  C  G +R+A+  L  M+   F   V     L+  L  AG    A
Sbjct: 77  GLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKA 136

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++ + M K G + D   +N LI  + K G+V+  +E+   + + G+  D  TY I+I  
Sbjct: 137 LEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDV 196

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +S  G  ++A+     +    H P    Y  ++ G+ +  + D+A   F EM+     P+
Sbjct: 197 LSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPD 256

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
              +  LI    + GR  +A      + +MG  P S  ++ +  G    G+ D
Sbjct: 257 LTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVD 309



 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 2/293 (0%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A+ VF +      Q  V + N+L+   C + +   A  L+  M    FV D  TY+ L+
Sbjct: 65  DALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLM 124

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +A   +G+  +A E    M   G  P     ++L+  L   G ++ A +++  M ++G +
Sbjct: 125 DALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIM 184

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D  T+N +I+ +   G  E     +  + +     DV TY  L+  + K    DEA  L
Sbjct: 185 PDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDL 244

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +  +   P  + +  +I  + + G+ +DA    + +   GH PN  +Y  LI+   R
Sbjct: 245 FDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCR 304

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            G+  +      +M E    P S  + ++  G    G   +A  +ELL+  +R
Sbjct: 305 SGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMA--MELLQEMVR 355



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 89/192 (46%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +MK    S    T + ++    K    D A ++F++  A  C   +  + +L+  L +  
Sbjct: 212 MMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAG 271

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A     R+++ G VP+   Y  L++ +C SG++ +  E  Q+M +    P      
Sbjct: 272 RMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYT 331

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +LV G    G+   A +++ +M+++G    L T+N LI ++  +G+VE    ++  +   
Sbjct: 332 ILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 391

Query: 187 GLCADVSTYKIL 198
           G   D+ TY  L
Sbjct: 392 GFNPDMQTYSAL 403



 Score = 41.2 bits (95), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F + G    A+E+  +         +  YN L+ +L        AY L + M
Sbjct: 329 TYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEM 388

Query: 79  IRKGFVPDKRTYAILVN 95
           I KGF PD +TY+ L N
Sbjct: 389 IAKGFNPDMQTYSALPN 405


>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1072

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 155/316 (49%), Gaps = 3/316 (0%)

Query: 15   VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK--LFHGAY 72
            ++P T +++I ++G+ GL + +++ F +            Y  LL +LC  K      A 
Sbjct: 752  ITPDTWAIMIMQYGRTGLTEISLKTFTEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAI 811

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +   MIR  ++PD+      ++  C +G++ EA++    +   G+  P+    L ++ L
Sbjct: 812  KIFHEMIRTRYIPDREVVGTYLSCLCEAGRLSEARKSTDSLCRIGYTIPL-SYSLYIRAL 870

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              +G LE A  +++++  +   LD  T+ +L+  + + G  E  +    S+ + G+   V
Sbjct: 871  CRSGRLEEALSLLDEVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTV 930

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
              Y  LI    K   I++A ++   + +DG +P    Y+ +I+G     + DDA+   + 
Sbjct: 931  HVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNH 990

Query: 253  MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            +K+KG  P+   Y+M I+   + G+  EA   L  M E G+ P +  F  V  GL   GK
Sbjct: 991  LKLKGPKPDFKTYSMFISCLCKAGKSEEALQLLSRMLEDGIVPSTINFRTVFFGLNCEGK 1050

Query: 313  HDLAEKIELLEVSLRS 328
            +DLA  +   +++L+S
Sbjct: 1051 NDLARTVMQQKLALKS 1066



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 128/310 (41%), Gaps = 1/310 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+  +     +T S++I +FGK  L+  A+  F K     C+    +Y  ++ +LC 
Sbjct: 233 VEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCN 292

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A A  + M++K    D   Y IL+ +   SG +        +MS     P    
Sbjct: 293 AGKGEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPEHDV 352

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +++    AG +  A +++  +  +  ++D E   +L++ +C+   +   VE+   + 
Sbjct: 353 NVCILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMK 412

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K  L  D   Y I+I    +   + +A  L   + E G +P  S Y  +++ +F   Q+D
Sbjct: 413 KRNLI-DAKIYGIIINGYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYD 471

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             F  F+EM  +G   +      ++    R     EA      M + G  P  + + +  
Sbjct: 472 KGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFI 531

Query: 305 DGLKNCGKHD 314
             L    + D
Sbjct: 532 KELCRVSRTD 541



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 116/264 (43%), Gaps = 3/264 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  +      K F    +L   M RKG +    T+AI++  +  +G    + +   EM 
Sbjct: 722 YNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLTEISLKTFTEMK 781

Query: 115 DKGFNPPVRGRDLLVQGLL--NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           D G+ P       L+  L       ++ A ++ ++MI+  ++ D E   + +  +C++G 
Sbjct: 782 DNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIFHEMIRTRYIPDREVVGTYLSCLCEAGR 841

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +    +   S+C++G    +S Y + I A+ ++G ++EA  LL  +  +        Y  
Sbjct: 842 LSEARKSTDSLCRIGYTIPLS-YSLYIRALCRSGRLEEALSLLDEVGTERSTLDQYTYGT 900

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G+ R+G+ ++A      MK  G  P   VYT LI    +  +  +A     +M + G
Sbjct: 901 LVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFFKEKQIEKAMQIFEKMQQDG 960

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
             P    +  +  G  N  + D A
Sbjct: 961 CEPTVVTYSALIRGYMNMERADDA 984



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 3/275 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y ++L+   E K F     L+  M +     D +T++IL++ +  +  + +A  F ++M 
Sbjct: 213 YYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLIGKALLFFEKMK 272

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P  +   ++V  L NAG  E A     +M+++   LDL  +  L+ ++ KSG+V 
Sbjct: 273 TSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVG 332

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + +L    +      ++ +   AG I EA  L+ +L              ++
Sbjct: 333 AVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKDILIDYEYLGTLV 392

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG+ R  +  DA      MK K +  +  +Y ++I    R     +A      M E G+ 
Sbjct: 393 KGLCRGDRITDAVEIVEIMK-KRNLIDAKIYGIIINGYLRKKDLSKAIELFQRMKESGIQ 451

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
           PI+  +  +   L N  ++D   ++  E+LE  +R
Sbjct: 452 PITSTYTELMQCLFNLNQYDKGFELFNEMLERGIR 486



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 3/189 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+MK  NL +  +   +II  + +   +  A+E+F +      Q     Y  L+  L  
Sbjct: 408 VEIMKKRNL-IDAKIYGIIINGYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFN 466

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +  +   + L   M+ +G   D      +V A      + EA E    M DKG NP  + 
Sbjct: 467 LNQYDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKS 526

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC--VEMYYS 182
             + ++ L      +   +++ KM      ++ + FN  I  + K GEV+    V+    
Sbjct: 527 YSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAIAFMEKKGEVDNVQKVKQMQR 586

Query: 183 VCKLGLCAD 191
           +C+L    D
Sbjct: 587 ICRLHSLQD 595



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 60/118 (50%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            IE MK   ++ +    + +I  F K   ++ A+++F K     C+  V+ Y++L+     
Sbjct: 918  IESMKEAGINPTVHVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMN 977

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            ++    A++++  +  KG  PD +TY++ ++  C +GK  EA + L  M + G  P  
Sbjct: 978  MERADDAWSVLNHLKLKGPKPDFKTYSMFISCLCKAGKSEEALQLLSRMLEDGIVPST 1035



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/245 (19%), Positives = 105/245 (42%), Gaps = 3/245 (1%)

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R GF    +TY  ++     + + +   + ++EM        ++   +L+     A  +
Sbjct: 202 MRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILISQFGKAKLI 261

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A     KM   G   D + +  ++ ++C +G+ E  +  Y  + +  +  D+S YKIL
Sbjct: 262 GKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMRLDLSLYKIL 321

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + +++K+G +     + +++      P   +   I+K     G+  +A     ++K K  
Sbjct: 322 LISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREALELIRDLKNKDI 381

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +      L+    RG R  +A   +  M +  L   ++ + ++ +G     K DL++ 
Sbjct: 382 LIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLID-AKIYGIIINGY--LRKKDLSKA 438

Query: 319 IELLE 323
           IEL +
Sbjct: 439 IELFQ 443



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/189 (18%), Positives = 80/189 (42%), Gaps = 1/189 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+  LC       A  ++  M ++  + D + Y I++N +     + +A E  Q M + 
Sbjct: 390 TLVKGLCRGDRITDAVEIVEIMKKRNLI-DAKIYGIIINGYLRKKDLSKAIELFQRMKES 448

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       L+Q L N    +   ++ N+M+++G  +D     +++    +   +   
Sbjct: 449 GIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEA 508

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E++ ++   G      +Y I I  + +    DE  ++L+ +          ++   I  
Sbjct: 509 WEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAIAF 568

Query: 237 MFRRGQFDD 245
           M ++G+ D+
Sbjct: 569 MEKKGEVDN 577



 Score = 44.3 bits (103), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 80/178 (44%), Gaps = 7/178 (3%)

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G+    ET+N  ++   +  + +    ++Y + + G      T+ I+I    + G+ 
Sbjct: 711 VQTGYCHTKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLT 770

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGM-FRRG-QFDDAFCFFSEMKIKGHPPNRPVYT 266
           + + +    + ++G+ P  S Y  ++  +  ++G + D+A   F EM    + P+R V  
Sbjct: 771 EISLKTFTEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIFHEMIRTRYIPDREVVG 830

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLT-PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             ++     GR  EA      +  +G T P+S  + L    L   G+  L E + LL+
Sbjct: 831 TYLSCLCEAGRLSEARKSTDSLCRIGYTIPLS--YSLYIRALCRSGR--LEEALSLLD 884



 Score = 37.7 bits (86), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 38/226 (16%), Positives = 90/226 (39%), Gaps = 9/226 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  +K  ++ +  + L  +++   +   + +AVE+       N     + Y  ++     
Sbjct: 373 IRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLIDAKI-YGIIINGYLR 431

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  L +RM   G  P   TY  L+    +  +  +  E   EM ++G       
Sbjct: 432 KKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDSVA 491

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +V   +   ++  A ++ N M  +G     ++++  I+ +C+    +  +++ Y + 
Sbjct: 492 TMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFIKELCRVSRTDEILKVLYKMQ 551

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRL--------LHNLVEDG 222
              +  +   + + I  + K G +D   ++        LH+L ++G
Sbjct: 552 ASKIFINNDIFNLAIAFMEKKGEVDNVQKVKQMQRICRLHSLQDEG 597


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 146/312 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW     +K   +  +  T  ++I+   +   + +AV    +         V+ +N+L+ 
Sbjct: 219 MWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMS 278

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C++     A +    MI+ G +PD  +Y IL++  C +G M EA EF  +M + G  P
Sbjct: 279 GFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEP 338

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L  G    G +  A ++V +M+  G   DL T+  LI   C+ G +E   ++ 
Sbjct: 339 DIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLK 398

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL   + TY +L+ ++ K+G IDEA  LLH +   G KP    Y+ +I G+ +R
Sbjct: 399 EKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKR 458

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  ++A   + EM  K   PN  V + +I+     G   EA  Y   +T+  +      +
Sbjct: 459 GAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILY 518

Query: 301 DLVTDGLKNCGK 312
           +++ DG    G 
Sbjct: 519 NIMIDGYAKLGN 530



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 142/297 (47%), Gaps = 5/297 (1%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + +  +V +A+ V  K    N Q  +  YNSLL+ L    +    Y  I+     G   +
Sbjct: 178 YSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIK---ASGVPQN 234

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           + T  IL++  C   ++++A  FL+E   + F P V   + L+ G    G ++ AK    
Sbjct: 235 EYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFC 294

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            MIK G + D+ ++N L+  +C +G +E  +E    +   G+  D+ TY IL       G
Sbjct: 295 MMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILG 354

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           +I  A++++  ++ +G  P    Y  +I G  + G  +++F    +M  +G   +   YT
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +L++   + GR  EA   L EM  +GL P    + ++  GL  C +  + E IEL E
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGL--CKRGAVEEAIELYE 469



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 136/320 (42%), Gaps = 2/320 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK ++ M    L+    T +++I    + G ++ + ++  K  +   +  ++ Y  LL +
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L+  M   G  PD  TY++L++  C  G + EA E  +EM  K   P 
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPN 479

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ GL   G +  A+   + + K     ++  +N +I+   K G +   V  Y 
Sbjct: 480 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 539

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+   + T+  LI    K G + EA +LL  +   G  P    Y  ++ G    G
Sbjct: 540 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 599

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                F    EM+ K   P +  YT+++    + GR  E+   L  M   GL P    ++
Sbjct: 600 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 659

Query: 302 LVTDGLKNCGKHDLAEKIEL 321
            V      C  HDL +  +L
Sbjct: 660 TVIQSF--CKAHDLQKAFQL 677



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ + K G +  AV  + +         ++ +NSL++  C+      A  L+  +  
Sbjct: 519 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 578

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G VP   TY  L+N +C  G M    + L EM  K   P      ++V+GL   G L  
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 638

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           + Q++  M  +G   D  T+N++I++ CK+ +++   +++  + +  L     TY +LI 
Sbjct: 639 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 698

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +   G + +A RLL  L +   +     Y  IIK    +G   +A  FF +M  +G   
Sbjct: 699 GLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEV 758

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +   Y+ +I    +     +A  +   M   G+ P
Sbjct: 759 SIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 793



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 4/314 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  V P   T +++   F   GL+  A +V  +         ++ Y  L+   C++    
Sbjct: 333 NHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIE 392

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            ++ L  +M+ +G      TY +L+++ C SG++ EA   L EM   G  P +    +L+
Sbjct: 393 ESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLI 452

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL   G +E A ++  +M  +    +    +++I  + + G +      + SV K  + 
Sbjct: 453 HGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVA 512

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            ++  Y I+I   +K G I EA R    ++E G  P    +  +I G  ++G+  +A   
Sbjct: 513 EEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKL 572

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              +K+ G  P    YT L+      G      + L EM    + P    + +V  GL  
Sbjct: 573 LDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGL-- 630

Query: 310 CGKHDLAEKIELLE 323
           C +  L E ++LL+
Sbjct: 631 CKEGRLHESVQLLK 644



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 2/284 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I  F K G +  AV++ +           + Y +L+   CE    H  +
Sbjct: 546 ISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMF 605

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M  K   P + TY ++V   C  G++ E+ + L+ M  +G  P     + ++Q  
Sbjct: 606 DMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSF 665

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  L+ A Q+ N+M++        T+N LI  +C  G ++    +  ++    +    
Sbjct: 666 CKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTK 725

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  +I A    G +  A    H +VE G +     Y+ +I  + +R    DA  FF  
Sbjct: 726 VAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCM 785

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           M   G PP++ +  +++    R G           M + GL P+
Sbjct: 786 MLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLPV 829



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II    + G +  A   F+  T  +  + ++LYN ++    ++     A    +++I 
Sbjct: 484 SAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIE 543

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P   T+  L+  +C  GK+ EA + L  +   G  P       L+ G    G + S
Sbjct: 544 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHS 603

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
              M+++M  +       T+  +++ +CK G +   V++   +   GL  D  TY  +I 
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 663

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           +  KA  + +AF+L + +++   +P P  Y  +I G+   G   DA      ++ +    
Sbjct: 664 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  YT +I      G    A  +  +M E G     R +  V + L
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRL 770



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/251 (18%), Positives = 113/251 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ +K + L  +  T + ++  + + G + +  ++ ++  A   +   + Y  ++  L
Sbjct: 571 KLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGL 630

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    H +  L++ M  +G  PD+ TY  ++ ++C +  +++A +   +M      P  
Sbjct: 631 CKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP 690

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ GL   G L+ A +++  +  Q   L    + ++I+  C  G+V+  +  ++ 
Sbjct: 691 VTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQ 750

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G    +  Y  +I  + K  +I +A      ++  G  P   +   ++    R G 
Sbjct: 751 MVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGD 810

Query: 243 FDDAFCFFSEM 253
            +  F  F+ M
Sbjct: 811 PNSVFEIFAMM 821



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/225 (16%), Positives = 101/225 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M+  +  M+   +  +  T +++++   K G +  +V++     A       + YN+++ 
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 663

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           + C+      A+ L  +M++    P   TY +L+N  C  G +++A   L  + D+    
Sbjct: 664 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  +++     G +++A    ++M+++GF + +  ++++I  +CK   +      +
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 783

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             +   G+  D     +++ A  ++G  +  F +   +++ G  P
Sbjct: 784 CMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 134/277 (48%), Gaps = 5/277 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + YNSL+  LC+ +    AY L+  M+  G +PD  TY  L+  +C S K  +A    +
Sbjct: 54  AVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 113

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKS 170
           ++  +GF P V     L+ GL   G L+ A  +  +MIK G  + +  T+NSLI   C+ 
Sbjct: 114 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 173

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+++  + +   + + G   DV TY  L+    K   +D+A+ LL+ +   G  P    +
Sbjct: 174 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTF 233

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G+ R  +  DA     EM+ K   P    Y  ++    R  +  EA  +++E  E
Sbjct: 234 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLE--E 291

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           M   P    F+++  GL  C  +  +E +EL+E + R
Sbjct: 292 MDCPPNVVSFNIMIRGL--CKVNRSSEAMELVEEARR 326



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 126/268 (47%), Gaps = 12/268 (4%)

Query: 69  HGAY--ALIRRMIRKGF---------VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           HG++  AL R   R+G          VP   TY  L++  C + +  EA + L+EM   G
Sbjct: 25  HGSHRRALQRWPGRRGCGAAVQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSG 84

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +     L+ G   +   + A ++  +++ +GF  D+ T++ LI+ +CK G ++  +
Sbjct: 85  CIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAI 144

Query: 178 EMYYSVCKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++  + K G C  +  TY  LI    + G +DEA  LL  + E G  P    Y  ++ G
Sbjct: 145 DLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNG 204

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +  + DDA+   ++M  KG  PN   +T L+    R  R  +A + L EM     +P 
Sbjct: 205 FCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPT 264

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEV 324
              ++ + DG     + + A K  L E+
Sbjct: 265 VYTYNTILDGYCRVNQLEEARKFMLEEM 292



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 116/250 (46%), Gaps = 4/250 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T S +I+   K G +  A+++F +   + +C    + YNSL+   C +     A  L+ R
Sbjct: 126 TYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLER 185

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY  L+N +C   ++ +A + L +M+ KG  P V     L+ GL     
Sbjct: 186 MAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENR 245

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A  ++ +M ++     + T+N++++  C+  ++E   +  + + ++    +V ++ I
Sbjct: 246 LSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARK--FMLEEMDCPPNVVSFNI 303

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIK 256
           +I  + K     EA  L+         P   +Y  +I  + R  + D+A   + +M +  
Sbjct: 304 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEP 363

Query: 257 GHPPNRPVYT 266
           G  PN   Y+
Sbjct: 364 GCLPNSITYS 373



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 2/176 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M     S    T + ++  F K   +D+A ++ N+ T       V+ + SL+  LC 
Sbjct: 183 LERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCR 242

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M RK   P   TY  +++ +C   ++ EA++F+ E  D    P V  
Sbjct: 243 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEEMD--CPPNVVS 300

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +++++GL        A ++V +  ++    D+  + ++I+ +C+  +V+    +Y
Sbjct: 301 FNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVY 356


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 150/332 (45%), Gaps = 35/332 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G       +  K    + +  V++YN+++ +LC+ KL   A  +   MI KG
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 227

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +C  G ++EA   L EM  K  NP V   ++L+  L   G ++ AK
Sbjct: 228 ISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAK 287

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+K     D+ T+NSLI+      EV+    ++YS+ + G+  DV  Y  +I  +
Sbjct: 288 ILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGL 347

Query: 203 SKAGMIDEAFRLLH-----NLVED------------------------------GHKPFP 227
            K  M+DEA  L       N++ D                              G +P  
Sbjct: 348 CKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDV 407

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++ G+ + G+ +DA   F  +  KG+  N   YT+LI    + G F EA +   +
Sbjct: 408 YSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSK 467

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M + G  P +  FD++   L    ++D AEKI
Sbjct: 468 MEDKGCMPDAVTFDIIIRALFEKDENDKAEKI 499



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 118/252 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N++L +L   K +    +L ++    G  PD  T +IL+N +C    +  A      + 
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +GF+P     + L++GL   G ++ A    ++++ QGF LD  ++ +LI  +CK+GE +
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +    +  DV  Y  +I ++ K  ++ +A  +   ++  G  P    Y  +I
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLI 239

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G    G   +AF   +EMK+K   PN   + +LI    + G+  EA   L  M +  + 
Sbjct: 240 HGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIK 299

Query: 295 PISRCFDLVTDG 306
           P    ++ + DG
Sbjct: 300 PDVFTYNSLIDG 311



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 6/253 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL---FALCE 64
           MK  N++ +  T +++I+   K G +  A  +         +  V  YNSL+   F + E
Sbjct: 258 MKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDE 317

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           VK  H  Y +   M ++G  PD + Y  ++N  C +  + EA    +EM  K   P +  
Sbjct: 318 VK--HAKY-VFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVT 374

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL    +LE A  +  +M +QG   D+ ++  L++ +CKSG +E   E++  + 
Sbjct: 375 YNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLL 434

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   +V  Y +LI  + KAG  DEA  L   + + G  P    +  II+ +F + + D
Sbjct: 435 AKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDEND 494

Query: 245 DAFCFFSEMKIKG 257
            A     EM  +G
Sbjct: 495 KAEKILREMIARG 507



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 117/258 (45%), Gaps = 12/258 (4%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+++   ++++GF P+  T   L+   C  G++++A  F  ++  +GF         L+ 
Sbjct: 111 AFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLIN 170

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G  ++  +++ K+       D+  +N++I ++CK+  +    ++Y  +   G+  
Sbjct: 171 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISP 230

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV TY  LI      G + EAF LL+ +      P    +  +I  + + G+  +A    
Sbjct: 231 DVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILL 290

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRF----VEAANYLV-EMTEMGLTPISRCFDLVTD 305
           + M      P+   Y  LI      G F    V+ A Y+   M + G+TP  +C+  + +
Sbjct: 291 AVMMKACIKPDVFTYNSLI-----DGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMIN 345

Query: 306 GLKNCGKHDLAEKIELLE 323
           GL  C    + E + L E
Sbjct: 346 GL--CKTKMVDEAMSLFE 361



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  N+     T + +I+   K+  ++ A+ +  +      Q  V  Y  LL  LC+ 
Sbjct: 361 EEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKS 420

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  + +R++ KG+  +   Y +L+N  C +G   EA +   +M DKG  P     
Sbjct: 421 GRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTF 480

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           D++++ L      + A++++ +MI +G +
Sbjct: 481 DIIIRALFEKDENDKAEKILREMIARGLL 509



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 61/148 (41%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           FN+++ ++  +      + ++      G+  D+ T  ILI        I  AF +  N++
Sbjct: 60  FNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANIL 119

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G  P       +IKG+  RG+   A  F  ++  +G   ++  Y  LI    + G   
Sbjct: 120 KRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETK 179

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
             A  L ++    + P    ++ + + L
Sbjct: 180 AVARLLRKLEGHSVKPDVVMYNTIINSL 207


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I+  F   G ++ A  +F +    N     + +N L+  LC+  +   A  +   M
Sbjct: 273 TYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETM 332

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L++ +C   +M EA + L  M  KG  P +   ++L+ G   +  +
Sbjct: 333 TEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRM 392

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+++++M ++    D  T+++L++ +C+ G     + ++  +C  GL  D+  Y IL
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSIL 452

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +DEA +LL  + E   KP   LY  +I+GMF  G+ + A   FS++   G 
Sbjct: 453 LDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGI 512

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAE 317
            P+   Y ++I    + G   EA  +  +M + G  P S  ++++  G L+N    D + 
Sbjct: 513 RPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQN---QDSST 569

Query: 318 KIELLE 323
            I+L++
Sbjct: 570 AIQLID 575



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 149/297 (50%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K+G    AV VF K      +  V+ YN+++ +LC+ +L + A   +  M+ +G
Sbjct: 207 VINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRG 266

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  +++ +CS G++ EA    +EM  +   P     ++LV GL   G +  A+
Sbjct: 267 IPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEAR 326

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   M ++G   +  T+N+L++  C   +++  +++   +   G   ++S+Y ILI   
Sbjct: 327 CVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGY 386

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K+  ++EA RLL  + E    P    Y+ +++G+ + G+  +A   F EM   G  P+ 
Sbjct: 387 CKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDL 446

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y++L+    + G   EA   L EM E  + P    + ++  G+   GK ++A+++
Sbjct: 447 MAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKEL 503



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G+V  A  V    T    +     YN+L+   C       A  ++  M
Sbjct: 308 TFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG  P+  +Y IL+N +C S +M EA+  L EMS+K   P       L+QGL   G  
Sbjct: 368 IGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP 427

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M   G + DL  ++ L++  CK G ++  +++   + +  +  ++  Y IL
Sbjct: 428 REALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTIL 487

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG ++ A  L   L  DG +P    Y  +IKG+ + G  D+A+ FF +M+  G 
Sbjct: 488 IRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGF 547

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            P+   Y ++I    +      A   + EM     +  S  F ++ D
Sbjct: 548 LPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 133/305 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + ++ +  +L+++I    +   VD AV V  K      Q   + +N+L+  LC    
Sbjct: 122 MDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGK 181

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+  G  P+  +Y  ++N  C +G    A    ++M      P V   + 
Sbjct: 182 IKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNT 241

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A + +++M+ +G   D+ T+N+++   C  G++     ++  +    
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRN 301

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  T+ IL+  + K GM+ EA  +   + E G +P    Y  ++ G     Q D+A 
Sbjct: 302 VMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAI 361

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M  KG  PN   Y +LI    +  R  EA   L EM+E  LTP +  +  +  GL
Sbjct: 362 KVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGL 421

Query: 308 KNCGK 312
              G+
Sbjct: 422 CQVGR 426



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 124/275 (45%), Gaps = 3/275 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ +  H  +D A++V        C   +  YN L+   C+ K  + A  L+  M
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY+ L+   C  G+ REA    +EM   G  P +    +L+ G    G+L
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++ +M ++    ++  +  LI  +  +G++E   E++  +   G+  D+ TY ++
Sbjct: 463 DEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVM 522

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G+ DEA+     + +DG  P    Y  II+G  +      A     EM  K  
Sbjct: 523 IKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRF 582

Query: 259 PPNRPVYTMLITMCGRG---GRFVEAANYLVEMTE 290
             +   + ML+ +        RF+  ++   +M +
Sbjct: 583 SADSSTFQMLLDLESHDEIISRFMRGSSQHTKMND 617



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 135/292 (46%), Gaps = 2/292 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  F +    N +  V+ +   L ++ + K +  A +L  +M   G   +  +  +
Sbjct: 77  IDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNV 136

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C    +  A   + +M   G  P     + L+ GL N G ++ A  + N+M+  G
Sbjct: 137 LINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSG 196

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ ++N++I  +CK+G     V ++  + +     +V TY  +I ++ K  +++EA 
Sbjct: 197 HEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAV 256

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  +V+ G  P    Y  I+ G    GQ ++A   F EM  +   P+   + +L+   
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            + G   EA      MTE G  P +  ++ + DG   C  + + E I++L +
Sbjct: 317 CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGY--CLHNQMDEAIKVLGI 366



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 94/206 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   NL+    T S +++   + G    A+ +F +  +      ++ Y+ LL   C+   
Sbjct: 402 MSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGH 461

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L++ M  +   P+   Y IL+     +GK+  A+E   ++S  G  P +   ++
Sbjct: 462 LDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNV 521

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++GLL  G  + A +   KM   GF+ D  ++N +I+   ++ +    +++   +    
Sbjct: 522 MIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKR 581

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFR 213
             AD ST+++L+   S   +I    R
Sbjct: 582 FSADSSTFQMLLDLESHDEIISRFMR 607


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 147/297 (49%), Gaps = 5/297 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE---VKLFH 69
           +SP   T + +I    K G ++ A +V +    +     V+ YN+L+   C+   V   +
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A A+++ M+     P+  T+ +L++ +C    +  A +  +EM  +G  P V   + LV
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL N G L  AK ++++M+      ++ T+N+LI   CK   +E   E++ ++ K GL 
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V T+  L+    K G ++EAF L   ++E G  P  S Y  +I G  R G+ ++    
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            +EM+ +G   +   Y +LI+         +AA  + EM + GL P    ++++ +G
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNG 522



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 139/293 (47%), Gaps = 2/293 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I+ F K   +  A++VF +  +   +  V+ YNSL+  LC     + A 
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAK 358

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+     P+  TY  L+N +C    + EA+E    +  +G  P V   + L+ G 
Sbjct: 359 VLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGY 418

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E A  +   M+++GF+ +  T+N LI   C+ G++E    +   +   G+ AD 
Sbjct: 419 CKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADT 478

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY ILI A  +     +A RL+  +++ G KP    Y  ++ G    G    A     +
Sbjct: 479 VTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQ 538

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           M+ +G   N   Y +LI    R G+  +A   L EM E GL P    ++++ +
Sbjct: 539 MEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKE 591



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 123/266 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M+   L  +  T + ++      G ++ A  + ++  + N +  V+ YN+L+   
Sbjct: 324 KVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGY 383

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ KL   A  L   + ++G  P+  T+  L++ +C  GKM EA    + M +KGF P  
Sbjct: 384 CKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNA 443

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G    G +E  K ++N+M  +G   D  T+N LI   C+  E +    +   
Sbjct: 444 STYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDE 503

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL     TY IL+      G +  A  L   + ++G       Y  +I+G  R+G+
Sbjct: 504 MLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGK 563

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTML 268
            +DA    +EM  KG  PNR  Y ++
Sbjct: 564 LEDANGLLNEMLEKGLIPNRTTYEII 589



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 115/241 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M   NL  +  T + +I  + K  L++ A E+F+          V+ +N+LL   C+
Sbjct: 361 LDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCK 420

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L + M+ KGF+P+  TY  L+  +C  GKM E +  L EM  +G       
Sbjct: 421 FGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVT 480

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+         + A +++++M+ +G      T+N L+   C  G +   + +   + 
Sbjct: 481 YNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQME 540

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G  A+V TY +LI    + G +++A  LL+ ++E G  P  + Y  I + M  +G   
Sbjct: 541 KEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLP 600

Query: 245 D 245
           D
Sbjct: 601 D 601



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 4/297 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
            +E F +   +  +  VL  N LL AL +   F G   + + MIR+   P+  T+  ++N
Sbjct: 179 GLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVIN 238

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG---LLNAGYLESAKQMVNKMIKQG 152
             C  GK+ +A + + +M   GF P V   + L+ G   +   G +  A  ++ +M++  
Sbjct: 239 GLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENK 298

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  TFN LI+  CK   +   ++++  +   GL   V TY  L+  +   G ++EA 
Sbjct: 299 VSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAK 358

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  ++    KP    Y  +I G  ++   ++A   F  +  +G  PN   +  L+   
Sbjct: 359 VLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGY 418

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            + G+  EA      M E G  P +  ++ +  G    GK +  + + L E+  R V
Sbjct: 419 CKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL-LNEMQCRGV 474



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 98/235 (41%), Gaps = 5/235 (2%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +LV A+  + K     E  +   D  +   V   + L+  L+        + +  +MI++
Sbjct: 165 MLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRR 224

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
               +L TFN++I  +CK G++    ++   +   G   +V TY  LI    K G + + 
Sbjct: 225 KISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKM 284

Query: 212 FR---LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ++   +L  +VE+   P    +  +I G  +      A   F EM+ +G  P    Y  L
Sbjct: 285 YKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +      G+  EA   L EM    L P    ++ + +G   C K  L E  EL +
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGY--CKKKLLEEARELFD 397



 Score = 37.7 bits (86), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 16/74 (21%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN L+   C       A  L+  M+ KG +P++ TY I+                 +
Sbjct: 548 VVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIK----------------E 591

Query: 112 EMSDKGFNPPVRGR 125
           EM +KGF P + G 
Sbjct: 592 EMMEKGFLPDIEGH 605


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 137/316 (43%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+ +SP T   +++     G +D A  +  +  A  C+  V++Y +L+    +   
Sbjct: 408 MKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSR 467

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +++ M  +G  PD   Y  L+     + +M EA+ FL EM + G  P       
Sbjct: 468 FGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + G + A    SA + V +M + G + +      LI   CK  +V      Y S+   G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQG 587

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  TY +L+  + K   +D+A  +   +   G  P    Y  +I G  + G    A 
Sbjct: 588 ILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKAS 647

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  +G  PN  +Y ML+    R G   +A   L EM+  GL P +  +  + DG 
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 308 KNCGKHDLAEKIELLE 323
             C   DLAE   L +
Sbjct: 708 --CKSGDLAEAFRLFD 721



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 118/260 (45%), Gaps = 2/260 (0%)

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
           GA  L   MI KG VP K TY +L++  C   ++ +A+  L EM   G +       LL+
Sbjct: 260 GALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLI 319

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GLL     ++AK +V++M+  G  +    ++  I  + K G +E    ++  +   GL 
Sbjct: 320 DGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLI 379

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                Y  LI    +   + + + LL  + +      P  Y  ++KGM   G  D A+  
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             EM   G  PN  +YT LI    +  RF +A   L EM E G+ P   C++ +  GL  
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 310 CGKHDLAEK--IELLEVSLR 327
             + D A    +E++E  L+
Sbjct: 500 AKRMDEARSFLVEMVENGLK 519



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 143/312 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S+   T SL+I+   K    D A  + ++  +        +Y+  +  + +  +
Sbjct: 303 MDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGV 362

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL   MI  G +P  + YA L+  +C    +R+  E L EM  +           
Sbjct: 363 MEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGT 422

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V+G+ ++G L+ A  +V +MI  G   ++  + +LI+T  ++      + +   + + G
Sbjct: 423 VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQG 482

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  Y  LI  +SKA  +DEA   L  +VE+G KP    Y   I G     +F  A 
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  EM+  G  PN+ + T LI    +  + +EA +    M + G+   ++ + ++ +GL
Sbjct: 543 KYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGL 602

Query: 308 KNCGKHDLAEKI 319
               K D AE+I
Sbjct: 603 FKNDKVDDAEEI 614



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 110/241 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  LC++K    A +L+  M   G   D  TY++L++          A+  + EM 
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMV 339

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G N      D  +  +   G +E AK + + MI  G +   + + SLIE  C+   V 
Sbjct: 340 SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVR 399

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + K  +     TY  ++  +  +G +D A+ ++  ++  G +P   +Y  +I
Sbjct: 400 QGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLI 459

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           K   +  +F DA     EMK +G  P+   Y  LI    +  R  EA ++LVEM E GL 
Sbjct: 460 KTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLK 519

Query: 295 P 295
           P
Sbjct: 520 P 520



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 1/225 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           +L   L+   C+ +    A +  R M+ +G + D +TY +L+N    + K+ +A+E  +E
Sbjct: 558 VLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  KG  P V    +L+ G    G ++ A  + ++M+++G   ++  +N L+   C+SGE
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +E   E+   +   GL  +  TY  +I    K+G + EAFRL   +   G  P   +Y  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++ G  R    + A   F   K KG   +   +  LI    + G+
Sbjct: 738 LVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALINWVFKFGK 781



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 16/318 (5%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P   S  ++I  F K G +  A  +F++         V++YN LL   C       A 
Sbjct: 623 IAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAK 682

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  P+  TY  +++ +C SG + EA     EM  KG  P       LV G 
Sbjct: 683 ELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE-----MYYSVCKLG 187
                +E A  +     K+G       FN+LI  + K G+ E   E     M  S  + G
Sbjct: 743 CRLNDVERAITIFGTN-KKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY I+I  + K G ++ A  L H +      P    Y  ++ G  + G+  + F
Sbjct: 802 KPNDV-TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMF 860

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT------PISRCFD 301
             F E    G  P+  +Y+++I    + G   +A   + +M             IS C  
Sbjct: 861 PVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRA 920

Query: 302 LVTDGLKNCGKHDLAEKI 319
           L++ G    G+ ++AEK+
Sbjct: 921 LLS-GFAKVGEMEVAEKV 937



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 148/357 (41%), Gaps = 36/357 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +++ P      I    K G+++ A  +F+   A         Y SL+   C  K 
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               Y L+  M ++  V    TY  +V   CSSG +  A   ++EM   G  P V     
Sbjct: 398 VRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTT 457

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++  L       A +++ +M +QG   D+  +NSLI  + K+  ++        + + G
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENG 517

Query: 188 LCADVSTYKILIPAVSKA--------------------------GMID---------EAF 212
           L  +  TY   I    +A                          G+I+         EA 
Sbjct: 518 LKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEAC 577

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
               ++V+ G       Y  ++ G+F+  + DDA   F EM+ KG  P+   Y +LI   
Sbjct: 578 SAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGF 637

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            + G   +A++   EM E GLTP    ++++  G    G+ + A+++ L E+S++ +
Sbjct: 638 SKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL-LDEMSVKGL 693



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 127/285 (44%), Gaps = 7/285 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
             +T ++++    K+  VD+A E+F +         V  Y  L+    ++     A ++ 
Sbjct: 591 DAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIF 650

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+   Y +L+  +C SG++ +A+E L EMS KG +P       ++ G   +
Sbjct: 651 DEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKS 710

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A ++ ++M  +G V D   + +L++  C+  +VE  + + +   K G  +  + +
Sbjct: 711 GDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI-FGTNKKGCASSTAPF 769

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGH-----KPFPSLYAPIIKGMFRRGQFDDAFCFF 250
             LI  V K G  +    +L+ L+ DG      KP    Y  +I  + + G  + A   F
Sbjct: 770 NALINWVFKFGKTELKTEVLNRLM-DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELF 828

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+     P    YT L+    + GR  E      E    G+ P
Sbjct: 829 HQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEP 873



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 22/302 (7%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNC----QQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           ++ + +   G ++ AV VF+            +C +L ++LL     + LF   Y   + 
Sbjct: 156 ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALL-RWNRLDLFWDVY---KG 211

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +  V D +TY +L+ A C +G ++  ++ L + ++K F    R   L V G L    
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFK-TEKEF----RTATLNVDGAL---- 262

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
                ++   MI +G V    T++ LI+ +CK   +E    +   +  LG+  D  TY +
Sbjct: 263 -----KLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSL 317

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + K    D A  L+H +V  G    P +Y   I  M + G  + A   F  M   G
Sbjct: 318 LIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASG 377

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P    Y  LI    R     +    LVEM +  +      +  V  G+ + G  D A 
Sbjct: 378 LIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAY 437

Query: 318 KI 319
            I
Sbjct: 438 NI 439



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 30/263 (11%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++ L   LC    F  A +++ RMI + + P    ++ +V         R +QEF+ + S
Sbjct: 100 FSFLALDLCNFGSFEKALSVVERMIERNW-PVAEVWSSIV---------RCSQEFVGK-S 148

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G    + G  +L  G +  GY+E A  + +  +    V  L     L++ + +   ++
Sbjct: 149 DDGV---LFG--ILFDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLD 203

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++Y  + +  +  DV TY +LI A  +AG +    +L  +++    K F +    + 
Sbjct: 204 LFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNV----QLGKDVLFKTEKEFRTATLNV- 258

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
                    D A      M  KG  P +  Y +LI    +  R  +A + LVEM  +G++
Sbjct: 259 ---------DGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVS 309

Query: 295 PISRCFDLVTDGLKNCGKHDLAE 317
             +  + L+ DGL      D A+
Sbjct: 310 LDNHTYSLLIDGLLKGRNADAAK 332



 Score = 40.4 bits (93), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 13/150 (8%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY I+++  C  G +  A+E   +M +    P V     L+ G    G       +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSG---------EVEFCVEMYYSVCKLGLCADVSTY 195
            ++ I  G   D   ++ +I    K G         +  F        CKL     +ST 
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS----ISTC 918

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           + L+   +K G ++ A +++ N+V   + P
Sbjct: 919 RALLSGFAKVGEMEVAEKVMENMVRLQYIP 948


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 146/297 (49%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G    A++V         Q  V++Y++++++LC+ KL   A+ L  +M+ K 
Sbjct: 90  LIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKR 149

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+      G+++EA     +M  K   P +   ++LV GL   G ++ A+
Sbjct: 150 ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKAR 209

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  MIKQ    D+ T+NSL++      +      ++ ++ + G+  DV +Y ++I  +
Sbjct: 210 NVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGL 269

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA  LL  +      P    Y+ +I G+ + G+  DA+   +EM  +G P + 
Sbjct: 270 CKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADV 329

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  L+    +  +  +A   L ++ + G+ P    + ++ DGL   G+   A+++
Sbjct: 330 ITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEV 386



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 126/282 (44%), Gaps = 14/282 (4%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T +++++   K G +  A  V       +    V+ YNSL+     VK  + A
Sbjct: 184 NIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKA 243

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M R+G  PD  +Y++++N  C +  + EA   L+EM  K   P       L+ G
Sbjct: 244 TFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDG 303

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A  +VN+M  +G   D+ T+NSL++ +CK+ +V+  + +   +   G+  D
Sbjct: 304 LHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPD 363

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY IL+  + K G + +A  +   L              +IKG      FD A    S
Sbjct: 364 IYTYTILVDGLCKNGRLKDAQEVYQIL--------------LIKGYHLDSLFDKALSLLS 409

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  PN   + +LI          +A   L EM   GL
Sbjct: 410 KMEDNGCTPNPVTFEILIRALFENDMNDKAVELLREMIARGL 451



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 126/271 (46%), Gaps = 2/271 (0%)

Query: 13  LSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L V P  +  S II    K  LV +A +++++         V+ YN+L++    V     
Sbjct: 113 LLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKE 172

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L  +M+ K   PD  T+ ILV+  C  G+M++A+  L  M  +  +P V   + L+ 
Sbjct: 173 AVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMD 232

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G         A  + N M ++G   D+ +++ +I  +CK+  V+  V +   +    +  
Sbjct: 233 GYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAP 292

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI  + K+G I +A+ L++ +   G       Y  ++  + +  Q D A    
Sbjct: 293 NTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLL 352

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           +++K +G  P+   YT+L+    + GR  +A
Sbjct: 353 TKIKDQGIQPDIYTYTILVDGLCKNGRLKDA 383



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 121/299 (40%), Gaps = 41/299 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG------KMREAQE 108
           +  +  +L ++  FH   +L  +M  +G   D     ILVN +C  G      K++E   
Sbjct: 11  FGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLH 70

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV----------------------- 145
           F  ++  KGF         L+ GL  AG   +A Q++                       
Sbjct: 71  FHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLC 130

Query: 146 -NKMIKQGFVL-----------DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            +K++   F L           D+ T+N+L+      G ++  V ++  +    +  D+ 
Sbjct: 131 KDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIY 190

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ IL+  + K G + +A  +L  +++    P    Y  ++ G F   Q + A   F+ M
Sbjct: 191 TFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTM 250

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +G  P+   Y+++I    +     EA N L EM    + P +  +  + DGL   G+
Sbjct: 251 ARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGR 309


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 147/302 (48%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           YN S +  + + +I+ F K G VD A  +F++         V+ YNSL+  LC+ +    
Sbjct: 194 YNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDK 253

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A A+++ M  KG +PD RTY I++  +CS G++ EA   L++MS  G  P V    LL+Q
Sbjct: 254 AVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQ 313

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G    A+ + + M+++G   +   ++ L+      G +    ++   + + G+  
Sbjct: 314 YYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPF 373

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +   + ILI A +K G +D+A      + ++G +P    Y+ +I  + + G+ +DA   F
Sbjct: 374 EHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHF 433

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           ++M  +G  PN   +T LI      G + +      EM   G+ P +   + + D L   
Sbjct: 434 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 493

Query: 311 GK 312
           G+
Sbjct: 494 GR 495



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%), Gaps = 6/277 (2%)

Query: 44  TAFNCQQCVLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGK 102
           T +  Q   L  N L+  LC+      A  ++ RRM   G+ PD  +Y  L+   C   K
Sbjct: 120 TGWRVQNVTL--NQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKK 177

Query: 103 MREAQEFLQEMS-DKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            +EA E L  M+ D G+N  P V   + ++ G    G ++ A  + ++M+ QG   D+ T
Sbjct: 178 SQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVT 237

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +NSLI+ +CK+  ++  V +   +   G+  D  TY I+I      G ++EA RLL  + 
Sbjct: 238 YNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMS 297

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
             G +P    Y+ +I+   + G+  +A   F  M  KG  PN  +Y +L+      G  +
Sbjct: 298 GSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALI 357

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  + L  M   G+    R F+++       G  D A
Sbjct: 358 DVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKA 394



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 138/293 (47%), Gaps = 4/293 (1%)

Query: 2   WKTIELM--KPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +E +  +  N  + P    ++ I++   K G V  A + F+       +  V+ YN+
Sbjct: 461 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNT 520

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C V     +   + RM+  G  PD  TY  L+N +  +G++ +A    +EM  K 
Sbjct: 521 LIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   ++++ GL  AG + +A+++  KM+ +G  L +ET+N+++  +C++  V+  +
Sbjct: 581 VKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEAL 640

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            M+  +       DV T+ I+I A+ K G IDEA  L   +V  G  P    Y+ +IK  
Sbjct: 641 RMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSH 700

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
              G  +++   F  M+  G   +  +  +++      G    A  YL ++ E
Sbjct: 701 IEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDE 753



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 137/331 (41%), Gaps = 35/331 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     + S +I    K G V++AV  FN+  +      ++ + SL+  LC +  
Sbjct: 401 MRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGE 460

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L   MI +G  PD      +++  C  G++ EAQ+F   +   G  P V   + 
Sbjct: 461 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNT 520

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE------------- 174
           L+ G    G ++ + + +++M+  G   D  T+NSL+    K+G VE             
Sbjct: 521 LIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580

Query: 175 --FCV--------------------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             FC                     E+Y  +   G    + TY  ++  + +   +DEA 
Sbjct: 581 VKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEAL 640

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+  +L     +     ++ +I  + + G+ D+A   FS M ++G  P+   Y+++I   
Sbjct: 641 RMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSH 700

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              G   E+ N  + M + G    S   +++
Sbjct: 701 IEEGLLEESDNLFLSMEKNGCAADSHMLNII 731



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 3/274 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+ A  +      A      M + G  PD  +Y+ +++  C +G++ +A     +M 
Sbjct: 378 FNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMV 437

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G +P +     L+ GL + G  +  +++  +MI +G   D    N++++ +CK G V 
Sbjct: 438 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 497

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              + +  V  +G+  DV +Y  LI      G +DE+ + L  +V  G +P    Y  ++
Sbjct: 498 EAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLL 557

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G F+ G+ +DA   + EM  K          +++    + GR V A    ++M + G  
Sbjct: 558 NGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQ 617

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
                ++ V  GL  C    + E + + E  LRS
Sbjct: 618 LRIETYNTVLGGL--CENSCVDEALRMFE-DLRS 648



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 6/201 (2%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCK 185
           +L++     G L+ A       +K G+ +   T N LI+ +C     +  ++M +  + +
Sbjct: 96  ILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPE 155

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH---KPFPSLYAPIIKGMFRRGQ 242
           LG   DV +Y  LI  +       EA  LL ++  DG     P    Y  +I G F+ G+
Sbjct: 156 LGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGE 215

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A+  F EM  +G PP+   Y  LI    +     +A   L  M + G+ P +R +++
Sbjct: 216 VDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNI 275

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           +  G   C    L E + LL+
Sbjct: 276 MIRGY--CSLGQLEEAVRLLK 294



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 83/186 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    + G +  A E++ K      Q  +  YN++L  LCE      A  +   +
Sbjct: 587 TSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDL 646

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K F  D RT++I++NA    G++ EA+     M  +G  P V    L+++  +  G L
Sbjct: 647 RSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLL 706

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E +  +   M K G   D    N ++  + + G+V         + +     + ST  +L
Sbjct: 707 EESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALL 766

Query: 199 IPAVSK 204
           IP VS+
Sbjct: 767 IPIVSE 772



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 78/168 (46%), Gaps = 3/168 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + ++    ++  VD A+ +F    +   +  V  ++ ++ AL +V     A +L   
Sbjct: 621 ETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSA 680

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G VPD  TY++++ +    G + E+      M   G        +++V+ LL  G 
Sbjct: 681 MVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGD 740

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYS 182
           +  A   + K+ ++ F L+  T   LI  + +     EV+F  E Y+S
Sbjct: 741 VRRAGTYLTKIDEKNFSLEASTAALLIPIVSEKKYQKEVKFLPEKYHS 788


>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 664

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 2/312 (0%)

Query: 1   MWKTIELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   ++P+   +++  F    +V  AVEV ++   + C+    ++  LL
Sbjct: 183 VWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLL 242

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  F P+ R +  L+  WC  GK+ EA+  L ++ + GF 
Sbjct: 243 DALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFE 301

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ +M K     +  +F  LI++ CK+ +++  + +
Sbjct: 302 PDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 361

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  +   G  ADV TY  LI    K G  D+A+ +L ++++ GH P    Y  I+    +
Sbjct: 362 FTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEK 421

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++      EM+  G  P+  +Y  +I +  + G   EA     EM   GL P    
Sbjct: 422 KEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDT 481

Query: 300 FDLVTDGLKNCG 311
           + L+  G  + G
Sbjct: 482 YILMVHGFLSQG 493


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 136/303 (44%), Gaps = 2/303 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + ++  + K G +  A+ +F           VL YN L+   C +  
Sbjct: 369 MRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+ +G +PD  TY IL+    ++  +  A+EF  EM  KG  P     + 
Sbjct: 429 LEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNT 488

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            ++  L  G +  A ++   M+ +G   D  T+N LI+ +CK+G +    ++   +   G
Sbjct: 489 RIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNG 548

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D  TY  LI A  + G++ EA +   +++ DG  P    Y   I    RRG    A+
Sbjct: 549 LQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAY 608

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +F +M  +G  PN   Y +LI    R GR   A  +  EM E GL P    + L+ DG 
Sbjct: 609 GWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG- 667

Query: 308 KNC 310
            NC
Sbjct: 668 -NC 669



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 129/312 (41%), Gaps = 37/312 (11%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+++  L +      A      M   G  PD  TY  L+N +C +G ++EA     
Sbjct: 343 VVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFG 402

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G  P V   ++L+ G    G LE A+++  +M++QG + D+ T+  L++    + 
Sbjct: 403 DLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNAC 462

Query: 172 EVEFCVEMYYSVCKLGL-----------------------------------CADVSTYK 196
            +    E +  +   GL                                    +D  TY 
Sbjct: 463 SLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYN 522

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ILI  + K G +++A  L   +V +G +P    Y  +I     RG   +A  FF +M   
Sbjct: 523 ILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISD 582

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   YT+ I    R G    A  +  +M E G+ P    ++++   L   G+  LA
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLA 642

Query: 317 EK--IELLEVSL 326
            +   E+LE  L
Sbjct: 643 YRHFHEMLERGL 654



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 93/199 (46%), Gaps = 1/199 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + YN L+  LC+    + A  L  +M+  G  PD  TY  L++A C  G +REA++F +
Sbjct: 518 TVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFK 577

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G  P      + +      G L SA     KM+++G   +  T+N LI  +C++G
Sbjct: 578 DMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTG 637

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +     ++ + + GL  +  TY +LI    K G  ++A R    + ++G  P    + 
Sbjct: 638 RTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPDYLTHK 697

Query: 232 PIIKGMFRRGQFDDAFCFF 250
            + KG F  G  + A  + 
Sbjct: 698 ALFKG-FDEGHMNHAIEYL 715



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 1/225 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A E F++  +   Q     YN+ + A   +     A+ L   M+ +G   D  TY IL++
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILID 526

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C +G + +A++   +M   G  P       L+      G L  A++    MI  G   
Sbjct: 527 GLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAP 586

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
              T+   I   C+ G +      +  + + G+  +  TY +LI A+ + G    A+R  
Sbjct: 587 SAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHF 646

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HP 259
           H ++E G  P    Y  +I G  + G ++DA  F+ EM   G HP
Sbjct: 647 HEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHP 691



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 111/233 (47%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+    + G +++A +   EM ++G  P V   + ++ GLL +G +E+A+    +M
Sbjct: 310 TYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEM 369

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   D+ T+NSL+   CK+G ++  + ++  +   GL   V TY ILI    + G +
Sbjct: 370 RAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDL 429

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA RL   +VE G  P    Y  ++KG         A  FF EM  KG  P+   Y   
Sbjct: 430 EEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTR 489

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           I      G   +A      M   G++  +  ++++ DGL   G  + A+ +++
Sbjct: 490 IRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQM 542



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 1/214 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+M    +S    T +++I+   K G +++A ++  K      Q   + Y  L+ A CE 
Sbjct: 507 EVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCER 566

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            L   A    + MI  G  P   TY + ++A+C  G +  A  + ++M ++G  P     
Sbjct: 567 GLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITY 626

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L+  L   G  + A +  ++M+++G V +  T+  LI+  CK G  E  +  Y+ + +
Sbjct: 627 NVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQ 686

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
            G+  D  T+K L     + G ++ A   L N V
Sbjct: 687 NGIHPDYLTHKALFKGFDE-GHMNHAIEYLENAV 719



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 113/277 (40%), Gaps = 1/277 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + G ++ A E+  +    + +     YN L+  L        A  L   M
Sbjct: 276 THNVVITGLARKGDLEEAAEMV-EGMRLSKKASSFTYNPLITGLLAKGFVKKADDLQLEM 334

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +P   TY  +++    SG++  AQ    EM   G  P V   + L+ G   AG L
Sbjct: 335 ENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSL 394

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   +   G    + T+N LI+  C+ G++E    +   + + G   DV TY IL
Sbjct: 395 KEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTIL 454

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     A  +  A      ++  G +P    Y   I+     G    AF     M ++G 
Sbjct: 455 MKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGI 514

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +   Y +LI    + G   +A +  ++M   GL P
Sbjct: 515 SSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQP 551



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 100/248 (40%), Gaps = 5/248 (2%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD +    ++     + +  +      EM   G  P +   + L+   L  G 
Sbjct: 193 MASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGR 252

Query: 138 LESAKQMVNKMIKQGF--VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
            +    ++ +M  +G   + +  T N +I  + + G++E   EM   + +L   A   TY
Sbjct: 253 NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGM-RLSKKASSFTY 311

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  +   G + +A  L   +  +G  P    Y  +I G+ + GQ + A   F EM+ 
Sbjct: 312 NPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA 371

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y  L+    + G   EA     ++   GL P    ++++ DG   C   DL
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGY--CRLGDL 429

Query: 316 AEKIELLE 323
            E   L E
Sbjct: 430 EEARRLKE 437



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M   G   D++  N ++  +  +   +    ++  + +LG+   + TY  L+ +  K 
Sbjct: 191 HEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKE 250

Query: 206 GMIDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           G  D+   LL  +   G    P+   +  +I G+ R+G  ++A      M++     +  
Sbjct: 251 GRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFT 310

Query: 264 VYTMLITMCGRGGRFVEAANYL-VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              ++  +  +G  FV+ A+ L +EM   G+ P    ++ +  GL   G+ + A+
Sbjct: 311 YNPLITGLLAKG--FVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQ 363


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 1/282 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D A+E+F +     C+     Y+ L+ +LC  +    A  L++ M   G   +   Y  L
Sbjct: 385 DIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTL 444

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C S ++ +A+E   +M   G +      + L+ GL     +E A Q++++MI +G 
Sbjct: 445 IDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGL 504

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D  T+NSL+   C+ G++E   ++  ++   G   D+ TY  LI  + +AG +D A +
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MC 272
           LL ++   G    P  Y P+I+ +F R +  +    F EM  K  PP+   + ++   +C
Sbjct: 565 LLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLC 624

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             GG   EA ++ VEM E G+ P    F  + +GL +    D
Sbjct: 625 NGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMED 666



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 146/312 (46%), Gaps = 20/312 (6%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L++EE   HGL  + +                 + +L+    E    +GA  + ++M+  
Sbjct: 179 LMLEEMANHGLKPDEIT----------------FTTLMQGFIEEGDLNGALKMKKQMLGY 222

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G +    +  +LVN +C  G++ EA  F+ E+S++GF+P     + LV G    G +  A
Sbjct: 223 GCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDA 282

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             +V+ MI++GF  D+ T+NSLI  +CK GE E  +E+   +       +  TY  LI A
Sbjct: 283 LDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISA 342

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K   I+ A  L   LV  G  P    +  +I+G+      D A   F EMK KG  P+
Sbjct: 343 LCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPD 402

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI-- 319
              Y++LI       R  EA   L EM   G    +  ++ + DGL    + + AE+I  
Sbjct: 403 EFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFD 462

Query: 320 --ELLEVSLRSV 329
             ELL VS  SV
Sbjct: 463 QMELLGVSRSSV 474



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 146/319 (45%), Gaps = 2/319 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + L     T + +++ F + G ++ A+++  +   + C    +    L+   C+
Sbjct: 181 LEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCK 240

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A   +  +  +GF PD+ T+  LVN +C  G + +A + +  M +KGF+P V  
Sbjct: 241 EGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYT 300

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G+   G  E A +++ +MI +    +  T+N+LI  +CK  E+E   ++   + 
Sbjct: 301 YNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILV 360

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV T+  LI  +  +   D A  +   +   G KP    Y+ +I  +    +  
Sbjct: 361 SKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLK 420

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM+  G   N  VY  LI    +  R  +A     +M  +G++  S  ++ + 
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLI 480

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DGL  C    + E  +L++
Sbjct: 481 DGL--CKNKRVEEASQLMD 497



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 131/277 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           ++ +++  F K G V+ A+    + +        + +NSL+   C +   + A  ++  M
Sbjct: 230 SVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KGF PD  TY  L++  C  G+  +A E LQ+M  +  +P     + L+  L     +
Sbjct: 290 IEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEI 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A  +   ++ +G + D+ TFN+LI+ +C S   +  +EM+  +   G   D  TY IL
Sbjct: 350 EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++     + EA  LL  +   G      +Y  +I G+ +  + +DA   F +M++ G 
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +   Y  LI    +  R  EA+  + +M   GL P
Sbjct: 470 SRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKP 506



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 126/279 (45%), Gaps = 2/279 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G  + A+E+  +     C    + YN+L+ ALC+      A  L R +
Sbjct: 300 TYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARIL 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG +PD  T+  L+   C S     A E  +EM +KG  P      +L+  L     L
Sbjct: 360 VSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRL 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M   G   +   +N+LI+ +CKS  +E   E++  +  LG+     TY  L
Sbjct: 420 KEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTL 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ++EA +L+  ++ +G KP    Y  ++    R G  + A      M   G 
Sbjct: 480 IDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGC 539

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL--VEMTEMGLTP 295
            P+   Y  LI    R GR   A+  L  V+M  + LTP
Sbjct: 540 EPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTP 578



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 129/298 (43%), Gaps = 2/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F     ++N +++      F        YN  L AL E         L  +M
Sbjct: 92  TFATLIQSFTNFHEIENLLKILENELGFKPDTN--FYNIALNALVEDNKLKLVEMLHSKM 149

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G V D  T+ +L+ A C + ++R A   L+EM++ G  P       L+QG +  G L
Sbjct: 150 VNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDL 209

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M  +M+  G +L   +   L+   CK G VE  +     V + G   D  T+  L
Sbjct: 210 NGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSL 269

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G +++A  ++  ++E G  P    Y  +I GM + G+F+ A     +M ++  
Sbjct: 270 VNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILREC 329

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y  LI+   +      A +    +   GL P    F+ +  GL      D+A
Sbjct: 330 SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIA 387



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 144/311 (46%), Gaps = 6/311 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F + G V++A+++ +          V  YNSL+  +C++  F  A  ++++M
Sbjct: 265 TFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  TY  L++A C   ++  A +  + +  KG  P V   + L+QGL  +   
Sbjct: 325 ILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQ 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M  +M  +G   D  T++ LI+++C    ++  + +   +   G   +   Y  L
Sbjct: 385 DIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTL 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  I++A  +   +   G       Y  +I G+ +  + ++A     +M ++G 
Sbjct: 445 IDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGL 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  L+T   R G   +A + +  M   G  P    +  +  GL   G+ D+A K
Sbjct: 505 KPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASK 564

Query: 319 IELLEVSLRSV 329
           +      LRSV
Sbjct: 565 L------LRSV 569



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/303 (21%), Positives = 130/303 (42%), Gaps = 39/303 (12%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +LL  L +   F     L++++   G +P+  T+A L+ ++ +  ++    + L+  ++ 
Sbjct: 60  TLLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIENLLKILE--NEL 117

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P     ++ +  L+    L+  + + +KM+ +G VLD+ TFN LI+ +CK+ ++   
Sbjct: 118 GFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPA 177

Query: 177 VEMYYSVCKLGLCADVSTY-----------------------------------KILIPA 201
           + M   +   GL  D  T+                                   K+L+  
Sbjct: 178 ILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNG 237

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K G ++EA R +  + E+G  P    +  ++ G  R G  +DA      M  KG  P+
Sbjct: 238 FCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPD 297

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y  LI+   + G F +A   L +M     +P +  ++ +   L  C ++++    +L
Sbjct: 298 VYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL--CKENEIEAATDL 355

Query: 322 LEV 324
             +
Sbjct: 356 ARI 358



 Score = 43.5 bits (101), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEM 113
           YN ++ AL   K       L R M+ K   PD  T+ I+    C+ G  ++EA +F  EM
Sbjct: 581 YNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEM 640

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            +KG  P       L +GL +    ++  +++N ++++  + + ET
Sbjct: 641 LEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSERET 686


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 158/320 (49%), Gaps = 6/320 (1%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L + P   T + +I      G +  AVE+FN+    +     + +  L+  LC+
Sbjct: 144 LSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCK 203

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +   A  +   M  KG  P+  TY  L+N +C   +M +A +  + M  KG  P V  
Sbjct: 204 KGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHS 263

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+ G   +  ++ AK ++ +M ++  + +  T+N+L++ +C +  +    E++  +C
Sbjct: 264 YSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMC 323

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  ++ TY IL+  + K G ++EA +LL ++ E   +P   LY  +I+GMF  G+ +
Sbjct: 324 SSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLE 383

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   FS++   G  P+   Y ++I    + G   EA     +M + G  P S  ++++ 
Sbjct: 384 VAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVII 443

Query: 305 DG-LKNCGKHDLAEKIELLE 323
            G L+N    D +  I+L++
Sbjct: 444 QGFLQN---QDPSTAIQLID 460



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 142/287 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G+V  A  VF   T    +  +  YN+L+   C     + A  +   M
Sbjct: 193 TFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIM 252

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   +Y+IL+N +C S ++ EA+  L +MS+K   P     + L+QGL +A  L
Sbjct: 253 VGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSL 312

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++  KM   G + +L T++ L++ +CK G +E  +++  S+ +  L  D+  Y IL
Sbjct: 313 LEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNIL 372

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG ++ A  L   L  +G +P    Y  +IKG+ + G  D+A+  F +M+  G 
Sbjct: 373 IQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGF 432

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            P+   Y ++I    +      A   + EM     +  S  F ++ D
Sbjct: 433 LPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A +VF       C   V  Y+ L+   C+ +    A AL+ +M  K  +P+  TY  
Sbjct: 242 MNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNT 301

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+   C +  + EAQE  ++M   G  P +R   +L+ GL   G+LE A +++  M ++ 
Sbjct: 302 LMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERK 361

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+  +N LI+ +  +G++E   E++  +   G+   V TY I+I  + K G+ DEA+
Sbjct: 362 LEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAY 421

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +L   + +DG  P    Y  II+G  +      A     EM  +    +   + ML+ +
Sbjct: 422 KLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDL 480



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
           V + N+   F         N L+ +LC +   H A +++ +M + G  PD  T+  L+N 
Sbjct: 106 VSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLING 165

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
            C+ G+++EA E   EM+ +   P      +LV  L   G +  A+ +   M ++G   +
Sbjct: 166 LCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPN 225

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           + T+N+L+   C   E+    +++  +   G    V +Y ILI    K+  IDEA  LL 
Sbjct: 226 IYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLT 285

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + E    P    Y  +++G+       +A   F +M   G  PN   Y++L+    + G
Sbjct: 286 QMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHG 345

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              EA   L  M E  L P    ++++  G+   GK ++A+++
Sbjct: 346 HLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKEL 388



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 2/290 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  F +    N +   +     L ++ + K +    +L  +M   G   +  T  I
Sbjct: 67  IDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNI 126

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N+ C    +  A   L +M   G  P       L+ GL N G ++ A ++ N+M  + 
Sbjct: 127 LINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRD 186

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            + +  TF  L++ +CK G V     ++ ++ + G+  ++ TY  L+        +++A 
Sbjct: 187 AMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDAS 246

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           ++   +V  G  P    Y+ +I G  +  + D+A    ++M  K   PN   Y  L+   
Sbjct: 247 KVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGL 306

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
                 +EA     +M   G+ P  R + ++ DGL  C    L E ++LL
Sbjct: 307 CHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGL--CKHGHLEEALKLL 354



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 35/246 (14%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E+M     + S  + S++I  + K   +D A  +  + +        + YN+L+  L
Sbjct: 247 KVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGL 306

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L ++M   G +P+ RTY+IL++  C  G + EA + L  M ++   P +
Sbjct: 307 CHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDI 366

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY-- 180
              ++L+QG+  AG LE AK++ +K+   G    + T+N +I+ + K G  +   +++  
Sbjct: 367 VLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRK 426

Query: 181 ------------YSVCKLGL---------------------CADVSTYKILIPAVSKAGM 207
                       Y+V   G                       AD ST+K+L+   S   +
Sbjct: 427 MEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDLESHDEI 486

Query: 208 IDEAFR 213
           I    R
Sbjct: 487 ISRFMR 492



 Score = 45.1 bits (105), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 7/122 (5%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ A E+F+K  A   +  V  YN ++  L +  L   AY L R+M   GF+PD  +Y
Sbjct: 380 GKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSY 439

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +++  +  +     A + + EM  + F+       +L+        LES  +++++ ++
Sbjct: 440 NVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD-------LESHDEIISRFMR 492

Query: 151 QG 152
           + 
Sbjct: 493 ES 494


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 140/324 (43%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+   K   V+ A+++F+          +  YNSL+  LC    +  A AL+  M
Sbjct: 240 TYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEM 299

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------------------- 115
                +PD  T+ +LV+  C  GK+ EAQ  L+ M++                       
Sbjct: 300 RSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEV 359

Query: 116 ------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       KG  P V   ++L+ G      ++ AKQ+ N+MI QG   +  ++N+L
Sbjct: 360 VEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTL 419

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +     ++ ++   G   ++ TY IL+    K G   +AFRL   +     
Sbjct: 420 IHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYS 479

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP   +Y  +I  M + G   DA   FSE+ +KG  PN  +YT +I    + G   EA  
Sbjct: 480 KPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALE 539

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
               M E G  P    ++++  G 
Sbjct: 540 AFRNMEEDGCPPDEISYNVIIRGF 563



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 143/303 (47%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P   T + +I    K G    A+E+F+   A  C+  V  Y +++  LC+
Sbjct: 156 LAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCK 215

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+++M   G  P+  TY+ ++++     ++ EA +    M  KG +P +  
Sbjct: 216 IGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFT 275

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+QGL N    + A  ++N+M     + D+ TFN L++TICK G+V     +  ++ 
Sbjct: 276 YNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT 335

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++G+  DV TY  L+   S    + EA +L   ++  G KP    Y  +I G  +  + D
Sbjct: 336 EMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRID 395

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+EM  +G  PN   Y  LI    + G   EA N    M   G  P    + ++ 
Sbjct: 396 EAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILL 455

Query: 305 DGL 307
           DG 
Sbjct: 456 DGF 458



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 136/304 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +  TLS++I  F     VD A  V  K      Q  ++ + +L+  LC+V  
Sbjct: 124 MELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGK 183

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L   M+ +G  PD  TY  ++N  C  G+   A   L++M + G  P V     
Sbjct: 184 FAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYST 243

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++        +  A  + + M  +G   D+ T+NSLI+ +C   + +    +   +  L 
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLN 303

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ T+ +L+  + K G + EA  +L  + E G +P    Y+ ++ G   R +  +A 
Sbjct: 304 IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEAR 363

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   Y +LI    +  R  EA     EM   GLTP +  ++ +  GL
Sbjct: 364 KLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGL 423

Query: 308 KNCG 311
              G
Sbjct: 424 CQLG 427



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 108/247 (43%), Gaps = 2/247 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V P   T S ++  +     V  A ++F+      C+  V  YN L+   C+VK    
Sbjct: 337 MGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDE 396

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI +G  P+  +Y  L++  C  G +REA+   + M   G  P +    +L+ 
Sbjct: 397 AKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLD 456

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    GY   A ++   M       +L  +N LI+ +CKSG +    +++  +   GL  
Sbjct: 457 GFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQP 516

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +   Y  +I  + K G++DEA     N+ EDG  P    Y  II+G         A    
Sbjct: 517 NAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLI 576

Query: 251 SEMKIKG 257
            EM+ KG
Sbjct: 577 GEMRDKG 583



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 141/337 (41%), Gaps = 37/337 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G    A  +  K     CQ  V+ Y++++ +  + +  + A  +   M
Sbjct: 205 TYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM 264

Query: 79  IRKGFVPDKRTY-----------------------------------AILVNAWCSSGKM 103
             KG  PD  TY                                    +LV+  C  GK+
Sbjct: 265 KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKV 324

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            EAQ  L+ M++ G  P V     L+ G      +  A+++ + MI +G   D+ ++N L
Sbjct: 325 SEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNIL 384

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   CK   ++   +++  +   GL  +  +Y  LI  + + G + EA  L  N+  +G+
Sbjct: 385 INGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGN 444

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y+ ++ G  ++G F  AF  F  M+     PN  +Y +LI    + G   +A  
Sbjct: 445 LPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARK 504

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
              E+   GL P ++ +  + +GL  C +  L E +E
Sbjct: 505 LFSELFVKGLQPNAQIYTTIINGL--CKEGLLDEALE 539



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 124/273 (45%), Gaps = 6/273 (2%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV-KLFHGAYALIRRMIRKGFVPDKRTYA 91
           +D+A+  FN         C++ +  LL A+ ++ + +    +L ++M   G  P+  T +
Sbjct: 78  IDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLS 137

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +    ++  A   L ++   G  P +     L+  L   G    A ++ + M+ +
Sbjct: 138 ILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVAR 197

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+ ++I  +CK GE      +   + + G   +V TY  +I +  K   ++EA
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +   +   G  P    Y  +I+G+    Q+ +A    +EM+     P+   + +L+  
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDT 317

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             + G+  EA   L  MTEMG+ P     D+VT
Sbjct: 318 ICKEGKVSEAQGVLKTMTEMGVEP-----DVVT 345



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 115/258 (44%), Gaps = 1/258 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ-EFLQEMSDKGFNPP 121
           C  +    A A    M+ +  +P    +  L++A    G+  +      ++M   G +P 
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +    +L+    +   ++ A  ++ K+IK G    + TF +LI  +CK G+    +E++ 
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   DV TY  +I  + K G    A  LL  + E G +P    Y+ II    +  
Sbjct: 193 DMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDR 252

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + ++A   FS MK+KG  P+   Y  LI       ++ EA+  L EM  + + P    F+
Sbjct: 253 RVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFN 312

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++ D +   GK   A+ +
Sbjct: 313 VLVDTICKEGKVSEAQGV 330



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 69/141 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++ F K G    A  +F    +   +  +++YN L+ A+C+      A  L   +
Sbjct: 450 TYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSEL 509

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+ + Y  ++N  C  G + EA E  + M + G  P     +++++G L+    
Sbjct: 510 FVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDE 569

Query: 139 ESAKQMVNKMIKQGFVLDLET 159
             A Q++ +M  +GF+ D+ T
Sbjct: 570 SRAVQLIGEMRDKGFIADVGT 590



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ LL   C+   F  A+ L R M      P+   Y IL++A C SG +R+A++   E+ 
Sbjct: 451 YSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELF 510

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P  +    ++ GL   G L+ A +    M + G   D  ++N +I       +  
Sbjct: 511 VKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDES 570

Query: 175 FCVEMYYSVCKLGLCADVST 194
             V++   +   G  ADV T
Sbjct: 571 RAVQLIGEMRDKGFIADVGT 590


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 2/301 (0%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++ P  LS  L+I+   + G VD AVEVF   +  NC      Y++L+  LC       A
Sbjct: 170 NIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEA 229

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +L+  M  +G  P+   + +L++A C  G +  A + +  M  KG  P     + LV G
Sbjct: 230 VSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHG 289

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G L+ A  ++N+M+    V +  TF +L++   K G     V +  S+ + G   +
Sbjct: 290 LCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGN 349

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             +Y  LI  + K G  +   +L   +VE G KP   +Y+ +I G+ R G+ D+A  +  
Sbjct: 350 EFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLI 409

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EMK KGH PN   Y+ L+      G   +A     EMT+        C+ ++ +GL   G
Sbjct: 410 EMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNG 469

Query: 312 K 312
           K
Sbjct: 470 K 470



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 147/330 (44%), Gaps = 40/330 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVK 66
           MK  N     ++  ++ + +GK  L   A+++F++  A F+C+Q V  +N++L  + +  
Sbjct: 91  MKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEG 150

Query: 67  LFHGAYALIRRMIRKG----FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            F  A      +I         P+  ++ +++ A C  G + +A E  + MSD+      
Sbjct: 151 CFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADG 210

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE---------- 172
                L+ GL N G ++ A  ++++M  +G   +   FN LI  +CK G+          
Sbjct: 211 YTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDN 270

Query: 173 --VEFCV--EMYYSVCKLGLC---------------------ADVSTYKILIPAVSKAGM 207
             ++ CV  E+ Y+    GLC                      +  T+  L+    K G 
Sbjct: 271 MFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGR 330

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
             +  R+L +L E G++     Y+ +I G+F+ G+ +     + EM  KG  PN  VY+ 
Sbjct: 331 ALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSA 390

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           LI    R G+  EA  YL+EM   G TP S
Sbjct: 391 LIDGLCREGKPDEAKEYLIEMKNKGHTPNS 420



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 113/254 (44%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P   +++I    K G +  A ++ +      C    + YNSL+  LC       A +L+
Sbjct: 244 NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 303

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            RM+    VP+  T+  LV+ +   G+  +    L  + +KG+         L+ GL   
Sbjct: 304 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 363

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G  E   Q+  +M+++G   +   +++LI+ +C+ G+ +   E    +   G   +  TY
Sbjct: 364 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 423

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+    +AG I +A  +   + ++        Y+ +I G+ + G+  +A   + +M  
Sbjct: 424 SSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLS 483

Query: 256 KGHPPNRPVYTMLI 269
           +G   +   Y+ +I
Sbjct: 484 RGIKLDVVAYSSMI 497



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 2/209 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I    K G  ++ ++++ +     C+   ++Y++L+  LC       A   +  M
Sbjct: 352 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L+  +  +G + +A    +EM+D   N       +L+ GL   G L
Sbjct: 412 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 471

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC--KLGLCADVSTYK 196
           + A  +  +M+ +G  LD+  ++S+I   C +  VE  ++++  +      L  DV TY 
Sbjct: 472 KEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYN 531

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           IL+ A      +  A  +L+ +++ G  P
Sbjct: 532 ILLNAFCTKNSVSRAIDILNTMLDQGCDP 560



 Score = 44.7 bits (104), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  + + G +  A+ V+ + T  +C    + Y+ L+  LC+      A  + ++M
Sbjct: 422 TYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQM 481

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--SDKGFNPPVRGRDLLVQGLLNAG 136
           + +G   D   Y+ +++ +C++  + +  +   +M   +    P V   ++L+       
Sbjct: 482 LSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKN 541

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            +  A  ++N M+ QG   D  T +  ++T+
Sbjct: 542 SVSRAIDILNTMLDQGCDPDFITCDIFLKTL 572


>gi|449446161|ref|XP_004140840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 141/292 (48%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M      V+ +T  ++I   G+ GL    VE F K   FN +     YN++L 
Sbjct: 170 MWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILH 229

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  VK +     +  +M+     PD  TY +L+ + C  GK+ +    L EM+ KGF+P
Sbjct: 230 GLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSP 289

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + GF  ++  F +LI  + ++G ++ C   +
Sbjct: 290 DFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFF 349

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   DV  Y ++I + ++AG  ++A      ++  G  P    Y  +I+G    
Sbjct: 350 DELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMV 409

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A+   SEM+ +G  PN  VY+ L++     G+  EA   + +M E G
Sbjct: 410 GKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKQMVENG 461



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N +  V  Y+ ++    E + F   + ++  M  KG+    RT+ IL+     +G  +  
Sbjct: 146 NYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRV 205

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E   +     F P     + ++ GL+     +    + ++M+      D+ T+N L+ +
Sbjct: 206 VERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFS 265

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK G+++    +   + + G   D  TY IL+  + K      A  LL+++ E G  P 
Sbjct: 266 SCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPN 325

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              +  +I G+ R G  D    FF E+   G  P+   YT++IT     G+  +A  +  
Sbjct: 326 VLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFD 385

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G  P    ++ +  G    GK
Sbjct: 386 EMIMKGQLPNVFTYNSMIRGFCMVGK 411


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 129/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K+ EA E   EM D+G  P       L+      G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           SA ++  +M+ QGF  DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 259 SAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  ++ G+ + G+ DDA   F EM   G  
Sbjct: 319 DGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G    A+  L EM   G  P
Sbjct: 379 PDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVP 414



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S ++  + + G V +A++ F                 +L  L ++K F   +   + ++
Sbjct: 69  FSGLMTAYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + I+++ +C  G+MR AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +V+   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K GM+D A  +   ++  G  P    Y  +I G+ ++G          EM + G  
Sbjct: 249 DVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +   +  +  +  GL   G+ D AEK+
Sbjct: 309 PDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 FREMLSVGLK 378



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 117/255 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ +G VP+  T+  L++  C +G +  A E  ++M  +GF+P +   
Sbjct: 220 SKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+  + ++++M   G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  L+  + + G  D+A ++   ++  G KP    Y  II    ++G    
Sbjct: 340 ESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRT 399

Query: 246 AFCFFSEMKIKGHPP 260
           A     EM+  GH P
Sbjct: 400 ASRLLKEMQRDGHVP 414



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N ++   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ N+M+ +G V +  TF +LI+  CK+G V
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +   G   D+ TY  LI  + K G + +   L+  +  +G KP    Y  +
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF F   M  +    +   YT L++   + GR  +A     EM  +GL
Sbjct: 318 IDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+     LL+
Sbjct: 378 KPDNGTYTMIINEF--CKKGDVRTASRLLK 405



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 53/118 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    + +   + Y +L+  LC+
Sbjct: 299 IDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  + R M+  G  PD  TY +++N +C  G +R A   L+EM   G  P V
Sbjct: 359 EGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCV 416


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 144/297 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ F K G +  A  +F +     C   V  YNSLL        F    +L + M+R
Sbjct: 161 NVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLR 220

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G VP+  T+  L++ +C  G M EA     EM   G  P V   + L++G+ + G    
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHE 280

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A++++ +MI+ G   D+ ++N LI+   KSG ++  ++++Y + K GL  D  +Y  +I 
Sbjct: 281 AQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + +AG +  AF +  +++ +G  P  ++  P++ G+ R  +  ++   F  M      P
Sbjct: 341 CLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVP 400

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P Y +L+    +  R  +      E+TE G +P      ++ + L+     + AE
Sbjct: 401 LIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKEAAE 457



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 2/309 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S++I    +   VD A E+ N+      Q  V+ Y SLL  LC++     A  L  RM
Sbjct: 89  SYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRM 148

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD   Y +L++ +   G M EA    +EM +KG  P V   + L+ G    G  
Sbjct: 149 VYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + +   M++QG V ++ TFN+L++  CK G++     ++  +  LG   DV +Y  L
Sbjct: 209 GRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTL 268

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G   EA RLL  ++  G  P    Y  +I G  + G  D A   F E+   G 
Sbjct: 269 MRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ +I    R G+   A     +M   G  P +     +  GL  C    L E 
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGL--CRGERLTES 386

Query: 319 IELLEVSLR 327
            EL +  ++
Sbjct: 387 CELFQAMVK 395



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 2/277 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L YN LL  L +       Y     M+  G VP+  TY  L+ + C + +  EA+   +
Sbjct: 17  TLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFR 76

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ +G +P V    +L+ GL     ++ A +++N+MI  G   ++ T+ SL+  +CK G
Sbjct: 77  GMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMG 136

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++  V+++  +   G   D   Y +LI   SK G + EA+RL   ++E G  P    Y 
Sbjct: 137 KLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYN 196

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G  R+G+F      F +M  +G  PN   +  L+    + G  VEA    +EM  +
Sbjct: 197 SLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSL 256

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           G  P    ++ +  G+  C K    E   LL   +RS
Sbjct: 257 GCPPDVVSYNTLMRGM--CSKGKPHEAQRLLREMIRS 291



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 2/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + ++E   K G  D+    +N      C      Y  LL +LC+ + F  A ++ R M
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  +Y+IL+   C   K+ EA E L EM D G  P V     L+ GL   G L
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKL 138

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M+ +G   D   +N LI+   K G++     ++  + + G    V TY  L
Sbjct: 139 KEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSL 198

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G       L  +++  G  P    +  ++ G  + G   +A   F EM+  G 
Sbjct: 199 LSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           PP+   Y T++  MC + G+  EA   L EM   G+ P    ++++ DG    G  D A 
Sbjct: 259 PPDVVSYNTLMRGMCSK-GKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAI 317

Query: 318 KI 319
           K+
Sbjct: 318 KL 319



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 123/279 (44%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A  VF    A  C   V  Y+ L+  LC  +    A  L+  MI  G  P+  TY  L
Sbjct: 69  EEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSL 128

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C  GK++EA +    M  +G  P     ++L+ G    G +  A ++  +M+++G 
Sbjct: 129 LSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGC 188

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           +  + T+NSL+    + GE      ++  + + G   ++ T+  L+    K G + EA R
Sbjct: 189 IPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHR 248

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   +   G  P    Y  +++GM  +G+  +A     EM   G  P+   Y +LI    
Sbjct: 249 LFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYS 308

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + G    A     E+ + GL P +  +  + D L   GK
Sbjct: 309 KSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGK 347



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 91/195 (46%)

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           +N      + L++ L  +G  +      N M+  G V +  T+  L+ ++C++   E   
Sbjct: 13  YNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEAR 72

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  +   G   +V +Y ILI  + +   +DEA  LL+ +++ GH+P    Y  ++ G+
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGL 132

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+  +A   FS M  +G PP+  VY +LI    + G   EA     EM E G  P  
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 298 RCFDLVTDGLKNCGK 312
             ++ +  G    G+
Sbjct: 193 FTYNSLLSGFSRKGE 207



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K G +  A  +F +  +  C   V+ YN+L+  +C     H A  L+R M
Sbjct: 229 TFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREM 288

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR G  PD  +Y IL++ +  SG +  A +   E+   G  P       ++  L  AG +
Sbjct: 289 IRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKV 348

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  +   MI  G   D      L+  +C+   +    E++ ++ K      +  Y +L
Sbjct: 349 GAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLL 408

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + KA   D+   + H L E G  P   +   I++ + R
Sbjct: 409 MYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRR 449



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 2/162 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +S  ++I+ + K G +D+A+++F +      +     Y++++  LC       A+
Sbjct: 293 VGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAF 352

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + MI  G  PD      LV   C   ++ E+ E  Q M      P +   +LL+  L
Sbjct: 353 VVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKL 412

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             A   +   ++ +++ ++GF  D+E    ++ET+ +S + E
Sbjct: 413 CKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKE 454


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 136/284 (47%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A+++  K      +  V +YN+++ ALC+ +L   AY L   M  KG   D  
Sbjct: 176 KIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVV 235

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+  +C + K++EA   L EM  K  NP V   ++LV  L   G ++ AK ++  M
Sbjct: 236 TYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVM 295

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +K     D+ T+++L++      E++    ++ ++  +G+  DV +Y ILI    K  M+
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMV 355

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA  L   + +    P    Y+ +I G+ + G+    +    EM+ +G P N   Y  L
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSL 415

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I    + G    A     +M + G+ P S  F ++ DGL   G+
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGR 459



 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 148/332 (44%), Gaps = 35/332 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+ LV  A  +F++ TA      V+ Y +L++  C       A  L+  M+ K 
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT 264

Query: 83  FVPDKRTYAILVNAWCSSGKMREA-----------------------------------Q 107
             P+  TY ILV+A C  GK++EA                                   Q
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQ 324

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
                MS  G  P V    +L+ G      ++ A  +  +M ++  V  + T++SLI+ +
Sbjct: 325 HVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKSG + +  ++   +   G+ A+V TY  LI  + K G +D A  L + + + G +P  
Sbjct: 385 CKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCS 444

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  ++ G+ + G+  DA   F ++  KG+  +   Y ++I    + G   EA   L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSK 504

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M E G  P +  FD++ + L    ++D AEK+
Sbjct: 505 MEENGCVPNAVTFDIIINALFKKDENDKAEKL 536



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 123/274 (44%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+         ++ +N +L +  ++K +  A +L  R+  KG  PD  T  I
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G++      L ++  +G+ P       L++GL   G +  A    +K++ QG
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  ++ +LI  +CK G+    +++   +       +V  Y  +I A+ K  ++ EA+
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAY 219

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +   G       Y  +I G     +  +A    +EM +K   PN   Y +L+   
Sbjct: 220 GLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + G+  EA N L  M +  + P    +  + DG
Sbjct: 280 CKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDG 313



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 105/222 (47%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VFN  +       V  Y  L+   C+ K+   A  L + M +K  VP   TY+ L++
Sbjct: 323 AQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C SG++    + + EM D+G    V   + L+ GL   G+L+ A  + NKM  QG   
Sbjct: 383 GLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRP 442

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
              TF  L++ +CK G ++   E +  +   G   DV  Y ++I    K G+++EA  +L
Sbjct: 443 CSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTML 502

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
             + E+G  P    +  II  +F++ + D A     +M  +G
Sbjct: 503 SKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRG 544



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 129/282 (45%), Gaps = 2/282 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +++P   T +++++   K G V  A  V         +  V+ Y++L+     V     A
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKA 323

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M   G  PD  +Y IL+N +C +  + EA    +EM  K   P +     L+ G
Sbjct: 324 QHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDG 383

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +     ++++M  +G   ++ T+NSLI+ +CK+G ++  + ++  +   G+   
Sbjct: 384 LCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPC 443

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+ IL+  + K G + +A     +L+  G+      Y  +I G  ++G  ++A    S
Sbjct: 444 SFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLS 503

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  PN   + ++I    +     +A   L +M   GL
Sbjct: 504 KMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 73/154 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+   +  +  T + +I+   K+G +D A+ +FNK      + C   +  LL 
Sbjct: 393 VWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A    + ++ KG+  D   Y +++N  C  G + EA   L +M + G  P
Sbjct: 453 GLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVP 512

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                D+++  L      + A++++ +MI +G +
Sbjct: 513 NAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G +D+A E+ ++      Q  +  YNS++  LC+      A  L+   
Sbjct: 458 TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 517

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D  TY  L++A+C SG+M +AQE L+EM  KG  P +   ++L+ G    G L
Sbjct: 518 EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  ++++N M+ +G   +  TFNSL++  C    ++    +Y  +C  G+  D  TY+ L
Sbjct: 578 EDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL 637

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    KA  + EA+ L   +   G     S Y+ +IKG  +R +F +A   F +M+ +G 
Sbjct: 638 VKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 697

Query: 259 PPNRPVYTMLITMCGRGGR 277
             ++ ++        +G R
Sbjct: 698 AADKEIFDFFSDTKYKGKR 716



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 6/310 (1%)

Query: 17  PQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           P T+  + +I+ F K G +  A + F +  + +    VL Y +++   C++     A  L
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M  KG  PD  T+  L+N +C +G M++A      M   G +P V     L+ GL  
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G L+SA +++++M K G   ++ T+NS++  +CKSG +E  V++       GL AD  T
Sbjct: 469 EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 528

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  L+ A  K+G +D+A  +L  ++  G +P    +  ++ G    G  +D     + M 
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588

Query: 255 IKGHPPNRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            KG  PN   +  L+   C R       A Y  +M   G+ P  + ++ +  G  +C   
Sbjct: 589 AKGIAPNATTFNSLVKQYCIRNNLKAATAIY-KDMCSRGVGPDGKTYENLVKG--HCKAR 645

Query: 314 DLAEKIELLE 323
           ++ E   L +
Sbjct: 646 NMKEAWFLFQ 655



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S ++  + + G +D   ++         +    +Y S++  LC +     A      M
Sbjct: 283 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 342

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+G +PD   Y  L++ +C  G +R A +F  EM  +   P V     ++ G    G +
Sbjct: 343 IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ ++M  +G   D  TF  LI   CK+G ++    ++  + + G   +V TY  L
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D A  LLH + + G +P    Y  I+ G+ + G  ++A     E +  G 
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT L+    + G   +A   L EM   GL P    F+++ +G    G  +  EK
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 319 I 319
           +
Sbjct: 583 L 583



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 119/268 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++++   C        + LI  M RKG  P+   Y  ++   C   K+ EA+E   
Sbjct: 281 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 340

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +G  P       L+ G    G + +A +   +M  +    D+ T+ ++I   C+ G
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    ++++ +   GL  D  T+  LI    KAG + +AFR+ +++++ G  P    Y 
Sbjct: 401 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 460

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G  D A     EM   G  PN   Y  ++    + G   EA   + E    
Sbjct: 461 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 520

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL   +  +  + D     G+ D A++I
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEI 548



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 141/333 (42%), Gaps = 35/333 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   +++    T + II  F + G +  A ++F++      +   + +  L+   C+   
Sbjct: 377 MHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGH 436

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +   MI+ G  P+  TY  L++  C  G +  A E L EM   G  P +   + 
Sbjct: 437 MKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNS 496

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V GL  +G +E A ++V +    G   D  T+ +L++  CKSGE++   E+   +   G
Sbjct: 497 IVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKG 556

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----FPSL-------------- 229
           L   + T+ +L+      GM+++  +LL+ ++  G  P    F SL              
Sbjct: 557 LQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAAT 616

Query: 230 -----------------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                            Y  ++KG  +     +A+  F EMK KG   +   Y++LI   
Sbjct: 617 AIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGF 676

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            +  +F+EA     +M   GL      FD  +D
Sbjct: 677 LKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 40/344 (11%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            P+   +  +     GL+  A  VF K   +     V   N  L  L +   +  A A+I
Sbjct: 174 DPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK-DCYKTATAII 232

Query: 76  --RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
             R     G   +  +Y I+++  C  G+++EA   L  M  KG+ P V     +V G  
Sbjct: 233 VFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYC 292

Query: 134 NAGYLE-----------------------------------SAKQMVNKMIKQGFVLDLE 158
             G L+                                    A++  ++MI+QG + D  
Sbjct: 293 RFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            + +LI+  CK G++    + +Y +    +  DV TY  +I    + G + EA +L H +
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G +P    +  +I G  + G   DAF   + M   G  PN   YT LI    + G  
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             A   L EM ++GL P    ++ + +GL  C   ++ E ++L+
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGL--CKSGNIEEAVKLV 514



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+    T + +++ + K G +D A E+  +      Q  ++ +N L+   C   +     
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 581

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+ KG  P+  T+  LV  +C    ++ A    ++M  +G  P  +  + LV+G 
Sbjct: 582 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 641

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  ++ A  +  +M  +GF + + T++ LI+   K  +     E++  + + GL AD 
Sbjct: 642 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 701

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVED 221
             +        K    D     +  ++E+
Sbjct: 702 EIFDFFSDTKYKGKRPDTIVDPIDEIIEN 730


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 139/303 (45%), Gaps = 2/303 (0%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           ++ +G+ G V  AV+VF +   +NC+  VL YN+++  L E   F  A+ +  RM   G 
Sbjct: 83  MKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGI 142

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VPD  T+ I + ++C + +   A   L  M  +G          +V G     Y   A +
Sbjct: 143 VPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYE 202

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + N M++ G   D+ TFN L+ T+CK GEV+    +   V K G+C+++ T+ I I  + 
Sbjct: 203 LFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLC 262

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           + GM+  A  +L +++ +G  P    Y  +I G+ +     +A  +  ++   G  P+  
Sbjct: 263 RKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGF 322

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            Y  LI    + G    A   L      G  P    +  + +GL  C   ++   + L  
Sbjct: 323 TYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGL--CQNDEIDRALALFN 380

Query: 324 VSL 326
            +L
Sbjct: 381 AAL 383



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 142/298 (47%), Gaps = 2/298 (0%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N+ + P   T ++ I+ F +     +A+ + N   +  CQ   + Y +++    E     
Sbjct: 139 NVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRV 198

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            AY L   M+R G  PD  T+  L++  C  G+++E++  L ++  KG    +   ++ +
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           QGL   G L  A  M++ +I++G   D+ T+N+LI  +CK+  V    +  + +   GL 
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE 318

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  LI    K GM+  A ++L   +  G  P    Y  +I G+ +  + D A   
Sbjct: 319 PDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALAL 378

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           F+    KG  P   +Y MLI    + G  ++A   + EM+E G +     ++LV +GL
Sbjct: 379 FNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGL 436



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 121/257 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C++ +   A  +++  I KGFVPD+ TY  L+N  C + ++  A        
Sbjct: 324 YNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAAL 383

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V   ++L++GL   G +  A QM+N+M + G   D+ T+N +I  +CK G V 
Sbjct: 384 GKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVS 443

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +       G   DV T+  LI    K   ++   ++L+ +   G  P    Y  ++
Sbjct: 444 DANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  + +D    F  M  KG  PN+  Y +L     + G+  EA + + E+   G+T
Sbjct: 504 NGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGIT 563

Query: 295 PISRCFDLVTDGLKNCG 311
           P +  F  +  G  N G
Sbjct: 564 PDTVSFATIISGFANNG 580



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 146/306 (47%), Gaps = 1/306 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + ++    K G V  +  + NK         +  +N  +  LC   +  GA +++  
Sbjct: 217 STFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDS 276

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +IR+G  PD  TY  L+   C +  + EA+++L ++ + G  P     + L+ G    G 
Sbjct: 277 VIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGM 336

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L++A++++   I +GFV D  T+ SLI  +C++ E++  + ++ +    GL   V  Y +
Sbjct: 337 LQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNM 396

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  + + G+I +A ++++ + E+G       Y  +I G+ + G   DA    ++   KG
Sbjct: 397 LIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKG 456

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH-DLA 316
           + P+   +  LI    +  +       L +M   G+TP    ++ V +GL    K+ DL 
Sbjct: 457 YVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLM 516

Query: 317 EKIELL 322
           E  E +
Sbjct: 517 ETFETM 522



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 3/294 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +FN       +  V+LYN L+  LC+  L   A  ++  M   G   D  TY +
Sbjct: 372 IDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNL 431

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N  C  G + +A   + +   KG+ P V   + L+ G      +E+  Q++NKM   G
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+NS++  + K+ + E  +E + ++ + G   +  TY IL  ++ KAG ++EA 
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEAL 551

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN-RPVYTMLITM 271
            L+  ++  G  P    +A II G    G    A+  F  M  +    +    Y ++I  
Sbjct: 552 DLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINA 611

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK--IELLE 323
                         +EM   G  P +  + ++ DG    G  D   K  +E++E
Sbjct: 612 FAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIE 665



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 137/304 (45%), Gaps = 3/304 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+   + GL+  A+++ N+ +   C   +  YN ++  LC++     A  L+   I 
Sbjct: 395 NMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIA 454

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG+VPD  T+  L++ +C   KM    + L +M   G  P V   + ++ GL  A   E 
Sbjct: 455 KGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNED 514

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
             +    M+++G V +  T+N L E++CK+G+V   +++   +   G+  D  ++  +I 
Sbjct: 515 LMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIIS 574

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPS-LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +  G +  A++L   + E       +  Y  +I     +         F EM   G  
Sbjct: 575 GFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCA 634

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y ++I      G       +L+EM E G  P    F  V + L  C +H + E +
Sbjct: 635 PDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCL--CVQHRVHEAV 692

Query: 320 ELLE 323
           +++ 
Sbjct: 693 DIIH 696



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 1/217 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K   ++  +++ NK  +      V+ YNS+L  L +             M
Sbjct: 463 TFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETM 522

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG VP+K TY IL  + C +GK+ EA + + E+ +KG  P       ++ G  N G L
Sbjct: 523 VEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDL 582

Query: 139 ESAKQMVNKMIKQGFVLDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + A Q+  +M +Q  V     T+N +I    +  ++    +++  +   G   D  TY++
Sbjct: 583 KGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRV 642

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
           +I      G  D  ++ L  ++E G  P  + +  +I
Sbjct: 643 MIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVI 679



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 118/278 (42%), Gaps = 1/278 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I    K G V +A  + N   A      V  +N+L+   C+         ++ +M
Sbjct: 428 TYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKM 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  ++N    + K  +  E  + M +KG  P     ++L + L  AG +
Sbjct: 488 WSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKV 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC-KLGLCADVSTYKI 197
             A  +V++++ +G   D  +F ++I     +G+++   +++  +  +  +    +TY I
Sbjct: 548 NEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNI 607

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A ++   +    +L   +   G  P    Y  +I G    G  D  + F  EM  KG
Sbjct: 608 MINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKG 667

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+   +  +I       R  EA + +  M   G+ P
Sbjct: 668 FIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 136/325 (41%), Gaps = 45/325 (13%)

Query: 36  AVEVFNKCTAFNC-QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT----- 89
           A+E+FNK    +  +  +L Y  ++  L     FHG +  +  ++ +  +    +     
Sbjct: 23  ALEMFNKVKREDGFKHSLLTYKCIIQKLG----FHGNFVAMENVLAETRMDIDNSLLEGV 78

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y   + ++   GK++EA +  + M      P V   + ++  L+ +GY + A ++  +M 
Sbjct: 79  YIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMK 138

Query: 150 KQGFVLDLETFNSLIETICKS--------------------GEVEFCV------------ 177
             G V D+ TF   I++ C++                      V +C             
Sbjct: 139 NVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRV 198

Query: 178 ---EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  + ++G+  DVST+  L+  + K G + E+ RLL+ +++ G       +   I
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFI 258

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G+ R+G    A      +  +G  P+   Y  LI    +    VEA  YL ++   GL 
Sbjct: 259 QGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLE 318

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    ++ + DG    G    AEKI
Sbjct: 319 PDGFTYNTLIDGYCKMGMLQNAEKI 343



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + +T E M       +  T +++ E   K G V+ A+++ ++          + + +++ 
Sbjct: 515 LMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIIS 574

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                    GAY L RRM  +  V     TY I++NA+     +   ++   EM   G  
Sbjct: 575 GFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCA 634

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P      +++ G    G  +S  + + +MI++GF+  L TF  +I  +C    V   V++
Sbjct: 635 PDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDI 694

Query: 180 YYSVCKLGLCADV 192
            + +   G+  +V
Sbjct: 695 IHFMVHNGIVPEV 707


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 146/324 (45%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+   K   V+ A+++F+   A      +  YNSL+  LC    +  A A++  M
Sbjct: 264 TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 323

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------------------- 115
           +    +P+  T+++L+N +C  G + EA+  L+ M++                       
Sbjct: 324 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 383

Query: 116 ------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       KG  P V   ++L+ G   A  +  AKQ+ N+MI QG   D+ ++N+L
Sbjct: 384 VEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 443

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+ +C+ G +    +++ ++   G   D+ TY IL+    K G + +AFRL   +     
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP   +Y  +I  M +     +A   FSE+ ++G  PN  +YT +I    + G   EA  
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALE 563

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
               M E G  P    ++++  G 
Sbjct: 564 AFRNMEEDGCPPNEFSYNVIIRGF 587



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 137/312 (43%), Gaps = 4/312 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    TL ++I  F +   VD    V  K      Q  ++ +N+L+  LC+V  
Sbjct: 148 MELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGK 207

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  L   M+ +G+ PD  TY  ++N  C  G+   A    ++M + G  P V     
Sbjct: 208 FGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYST 267

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + + M  +G   ++ T+NSLI+ +C          M   +  L 
Sbjct: 268 IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLN 327

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  ++ T+ +LI    K G + EA  +L  + E G +P    Y+ ++ G   + +  +A 
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   Y +LI    +  R  EA     EM   GLTP    ++ + DGL
Sbjct: 388 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGL 447

Query: 308 KNCGK----HDL 315
              G+    HDL
Sbjct: 448 CQLGRLREAHDL 459



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 142/312 (45%), Gaps = 2/312 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L ++  T + +I    K G    AVE+F+   A   Q  V  Y +++  LC++     A 
Sbjct: 188 LQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAA 247

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R+M   G  PD  TY+ ++++ C   ++ EA +    M  KG +P +   + L+QGL
Sbjct: 248 GLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGL 307

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            N      A  M+N+M+    + ++ TF+ LI   CK G V     +  ++ ++G+  +V
Sbjct: 308 CNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNV 367

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+   S    + EA +L   ++  G KP    Y  +I G  +  +  +A   F+E
Sbjct: 368 VTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNE 427

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  P+   Y  LI    + GR  EA +    M   G  P    + ++ DG   C +
Sbjct: 428 MIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGF--CKQ 485

Query: 313 HDLAEKIELLEV 324
             LA+   L   
Sbjct: 486 GYLAKAFRLFRA 497



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/247 (27%), Positives = 111/247 (44%), Gaps = 2/247 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V P   T S ++  +     V  A ++F+      C+  V  YN L+   C+ K    
Sbjct: 361 MGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGE 420

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI +G  PD  +Y  L++  C  G++REA +  + M   G  P +    +L+ 
Sbjct: 421 AKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLD 480

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    GYL  A ++   M       ++  +N LI+ +CKS  ++   +++  +   GL  
Sbjct: 481 GFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 540

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V  Y  +I  + K G++DEA     N+ EDG  P    Y  II+G  +      A    
Sbjct: 541 NVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLI 600

Query: 251 SEMKIKG 257
            EM+ KG
Sbjct: 601 GEMREKG 607



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 126/264 (47%), Gaps = 1/264 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYA 91
           +D+A+  FN       + C++ +N LL A+ +++ +H A  +L ++M   G  PD  T  
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +L+N +    ++      L ++   G    +   + L+ GL   G    A ++ + M+ +
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G+  D+ T+ ++I  +CK GE      ++  + + G   DV TY  +I ++ K   ++EA
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +   +   G  P    Y  +I+G+    ++ +A    +EM      PN   +++LI +
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
             + G   EA   L  MTEMG+ P
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEP 365



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 37/338 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + II    K G    A  +F K     CQ  V+ Y++++ +LC+ +  + A  +   
Sbjct: 228 HTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSY 287

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ------- 130
           M  KG  P+  TY  L+   C+  + REA   L EM      P +    LL+        
Sbjct: 288 MKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 347

Query: 131 ------------------------GLLNAGYLES----AKQMVNKMIKQGFVLDLETFNS 162
                                    L+N   L++    A+++ + MI +G   D+ ++N 
Sbjct: 348 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNI 407

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           LI   CK+  +    +++  +   GL  D+ +Y  LI  + + G + EA  L  N++ +G
Sbjct: 408 LINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 467

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
           + P    Y+ ++ G  ++G    AF  F  M+     PN  +Y +LI    +     EA 
Sbjct: 468 NLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEAR 527

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
               E+   GL P  + +  + +GL  C +  L E +E
Sbjct: 528 KLFSELFVQGLQPNVQIYTTIINGL--CKEGLLDEALE 563



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++ F K G +  A  +F    +   +  +++YN L+ A+C+ +    A  L   +
Sbjct: 474 TYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSEL 533

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+ + Y  ++N  C  G + EA E  + M + G  P     +++++G L     
Sbjct: 534 FVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDE 593

Query: 139 ESAKQMVNKMIKQGFVLDLET 159
             A Q++ +M ++GFV D+ T
Sbjct: 594 SRAVQLIGEMREKGFVADVAT 614



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%)

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           Y ++   +  +M   G   D  T + LI    +   V+    +   + KLGL   + T+ 
Sbjct: 137 YHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFN 196

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI  + K G   +A  L  ++V  G++P    Y  II G+ + G+   A   F +M   
Sbjct: 197 TLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEA 256

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           G  P+   Y+ +I    +  R  EA +    M   G++P    ++ +  GL N
Sbjct: 257 GCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCN 309



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 35/211 (16%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I  + K   +  A ++FN+         ++ YN+L+  LC++     A+ L + M
Sbjct: 404 SYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 463

Query: 79  IRKGFVPDKRTYAIL-----------------------------------VNAWCSSGKM 103
           +  G +PD  TY+IL                                   ++A C S  +
Sbjct: 464 LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNL 523

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
           +EA++   E+  +G  P V+    ++ GL   G L+ A +    M + G   +  ++N +
Sbjct: 524 KEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVI 583

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           I    +  +    V++   + + G  ADV+T
Sbjct: 584 IRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  126 bits (316), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 142/292 (48%), Gaps = 6/292 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV----KLFHGAYAL 74
           T +++I    K G ++ A +V      + C   V+ YN+L+   C++    K++  A A+
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK-ADAV 283

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           ++ M+     P+  T+ IL++ +     +  + +  +EM D+   P V   + L+ GL N
Sbjct: 284 LKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCN 343

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +  A  M +KM+  G   +L T+N+LI   CK+  ++  ++M+ SV   G       
Sbjct: 344 GGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRM 403

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +LI A  K G ID+ F L   +  +G  P    Y  +I G+ R G  + A   F ++ 
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            KG P     + ++   C R G   +AA  L EM++MGL P    +++V  G
Sbjct: 464 SKGLPDLVTFHILMEGYC-RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKG 514



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 4/300 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I+ F K   +  +++VF +    + +  V+ YNSL+  LC       A 
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++  +M+  G  P+  TY  L+N +C +  ++EA +    +  +G  P  R  ++L+   
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++    +  +M ++G V D+ T+N LI  +C++G +E   +++  +   GL  D+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDL 470

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+ IL+    + G   +A  LL  + + G KP    Y  ++KG  + G    A    ++
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530

Query: 253 M-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           M K +    N   Y +L+    + G+  +A   L EM E GL P    +++V + + + G
Sbjct: 531 MEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 138/311 (44%), Gaps = 3/311 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+ V+     +++  +  +   +   E F +   +  +   L    L+ AL +       
Sbjct: 148 NVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADV 207

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + + MIR+   P+  T+ +++NA C +GKM +A++ +++M   G +P V   + L+ G
Sbjct: 208 EYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDG 267

Query: 132 ---LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
              L   G +  A  ++ +M++     +L TFN LI+   K   +   ++++  +    +
Sbjct: 268 YCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDV 327

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V +Y  LI  +   G I EA  +   +V  G +P    Y  +I G  +     +A  
Sbjct: 328 KPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALD 387

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F  +K +G  P   +Y MLI    + G+  +      EM   G+ P    ++ +  GL 
Sbjct: 388 MFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLC 447

Query: 309 NCGKHDLAEKI 319
             G  + A+K+
Sbjct: 448 RNGNIEAAKKL 458



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    ++G ++ A ++F++ T+      V  ++ L+   C       A  L++ M
Sbjct: 438 TYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVT-FHILMEGYCRKGESRKAAMLLKEM 496

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS-DKGFNPPVRGRDLLVQGLLNAGY 137
            + G  P   TY I++  +C  G ++ A     +M  ++     V   ++L+QG    G 
Sbjct: 497 SKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGK 556

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           LE A  ++N+M+++G V +  T+  + E +   G V
Sbjct: 557 LEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFV 592


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 129/259 (49%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I+   K G +D+A E+ ++      Q  +  YNS++  LC+      A  L+   
Sbjct: 901  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 960

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               G   D  TY  L++A+C SG+M +AQE L+EM  KG  P +   ++L+ G    G L
Sbjct: 961  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            E  ++++N M+ +G   +  TFNSL++  C    ++    +Y  +C  G+  D  TY+ L
Sbjct: 1021 EDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL 1080

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            +    KA  + EA+ L   +   G     S Y+ +IKG  +R +F +A   F +M+ +G 
Sbjct: 1081 VKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 1140

Query: 259  PPNRPVYTMLITMCGRGGR 277
              ++ ++        +G R
Sbjct: 1141 AADKEIFDFFSDTKYKGKR 1159



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 6/304 (1%)

Query: 17   PQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            P T+  + +I+ F K G +  A + F +  + +    VL Y +++   C++     A  L
Sbjct: 792  PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 851

Query: 75   IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
               M  KG  PD  T+  L+N +C +G M++A      M   G +P V     L+ GL  
Sbjct: 852  FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 911

Query: 135  AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
             G L+SA +++++M K G   ++ T+NS++  +CKSG +E  V++       GL AD  T
Sbjct: 912  EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 971

Query: 195  YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            Y  L+ A  K+G +D+A  +L  ++  G +P    +  ++ G    G  +D     + M 
Sbjct: 972  YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 1031

Query: 255  IKGHPPNRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             KG  PN   +  L+   C R       A Y  +M   G+ P  + ++ +  G  +C   
Sbjct: 1032 AKGIAPNATTFNSLVKQYCIRNNLKAATAIY-KDMCSRGVGPDGKTYENLVKG--HCKAR 1088

Query: 314  DLAE 317
            ++ E
Sbjct: 1089 NMKE 1092



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            + S ++  + + G +D   ++         +    +Y S++  LC +     A      M
Sbjct: 726  SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM 785

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            IR+G +PD   Y  L++ +C  G +R A +F  EM  +   P V     ++ G    G +
Sbjct: 786  IRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              A ++ ++M  +G   D  TF  LI   CK+G ++    ++  + + G   +V TY  L
Sbjct: 846  VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  + K G +D A  LLH + + G +P    Y  I+ G+ + G  ++A     E +  G 
Sbjct: 906  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 965

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
              +   YT L+    + G   +A   L EM   GL P    F+++ +G    G  +  EK
Sbjct: 966  NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1025

Query: 319  I 319
            +
Sbjct: 1026 L 1026



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 119/268 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++++   C        + LI  M RKG  P+   Y  ++   C   K+ EA+E   
Sbjct: 724 VISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFS 783

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +G  P       L+ G    G + +A +   +M  +    D+ T+ ++I   C+ G
Sbjct: 784 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 843

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    ++++ +   GL  D  T+  LI    KAG + +AFR+ +++++ G  P    Y 
Sbjct: 844 DMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYT 903

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G  D A     EM   G  PN   Y  ++    + G   EA   + E    
Sbjct: 904 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 963

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL   +  +  + D     G+ D A++I
Sbjct: 964 GLNADTVTYTTLMDAYCKSGEMDKAQEI 991



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 142/332 (42%), Gaps = 37/332 (11%)

Query: 11   YNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
            ++  ++P  L+   II  F + G +  A ++F++      +   + +  L+   C+    
Sbjct: 821  HSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHM 880

Query: 69   HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
              A+ +   MI+ G  P+  TY  L++  C  G +  A E L EM   G  P +   + +
Sbjct: 881  KDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 940

Query: 129  VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
            V GL  +G +E A ++V +    G   D  T+ +L++  CKSGE++   E+   +   GL
Sbjct: 941  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 1000

Query: 189  CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----FPSL--------------- 229
               + T+ +L+      GM+++  +LL+ ++  G  P    F SL               
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 1060

Query: 230  ----------------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
                            Y  ++KG  +     +A+  F EMK KG   +   Y++LI    
Sbjct: 1061 IYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFL 1120

Query: 274  RGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            +  +F+EA     +M   GL      FD  +D
Sbjct: 1121 KRKKFLEAREVFDQMRREGLAADKEIFDFFSD 1152



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 139/343 (40%), Gaps = 40/343 (11%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI- 75
           P+   +  +     GL+  A  VF K   +     V   N  L  L +   +  A A+I 
Sbjct: 618 PRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK-DCYKTATAIIV 676

Query: 76  -RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R     G   +  +Y I+++  C  G+++EA   L  M  KG+ P V     +V G   
Sbjct: 677 FREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCR 736

Query: 135 AGYLE-----------------------------------SAKQMVNKMIKQGFVLDLET 159
            G L+                                    A++  ++MI+QG + D   
Sbjct: 737 FGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVV 796

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           + +LI+  CK G++    + +Y +    +  DV TY  +I    + G + EA +L H + 
Sbjct: 797 YTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMF 856

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
             G +P    +  +I G  + G   DAF   + M   G  PN   YT LI    + G   
Sbjct: 857 CKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLD 916

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            A   L EM ++GL P    ++ + +GL  C   ++ E ++L+
Sbjct: 917 SANELLHEMWKIGLQPNIFTYNSIVNGL--CKSGNIEEAVKLV 957



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T ++++  F  HG++++  ++ N   A         +NSL+   C       A A+ + M
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              +G  PD +TY  LV   C +  M+EA    QEM  KGF+  V    +L++G L     
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 1125

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
              A+++ ++M ++G   D E F+   +T  K    +  V+
Sbjct: 1126 LEAREVFDQMRREGLAADKEIFDFFSDTKYKGKRPDTIVD 1165



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            L+    T + +++ + K G +D A E+  +      Q  ++ +N L+   C   +     
Sbjct: 965  LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1024

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             L+  M+ KG  P+  T+  LV  +C    ++ A    ++M  +G  P  +  + LV+G 
Sbjct: 1025 KLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGH 1084

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              A  ++ A  +  +M  +GF + + T++ LI+   K  +     E++  + + GL AD 
Sbjct: 1085 CKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADK 1144

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVED 221
              +        K    D     +  ++E+
Sbjct: 1145 EIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1173


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 133/273 (48%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            S S   +S ++E   K G ++ A+ +  +   F     + +YN+L+ +LC+ + FH A 
Sbjct: 328 FSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAE 387

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L  RM + G  P+  TY+IL++ +C  GK+  A  FL EM D G    V   + L+ G 
Sbjct: 388 LLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGH 447

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G + +A+  + +MI +     + T+ SL+   C  G++   + +Y+ +   G+   +
Sbjct: 448 CKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSI 507

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  L+  + +AG+I +A +L + + E   KP    Y  +I+G    G    AF F  E
Sbjct: 508 YTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           M  KG  P+   Y  LI      G+  EA  ++
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFV 600



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 135/345 (39%), Gaps = 35/345 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T S++I+ F + G +D A+    +      +  V  YNSL+   C+   
Sbjct: 393 MGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGD 452

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  MI K   P   TY  L+  +CS GK+ +A     EM+ KG  P +     
Sbjct: 453 ISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG +  A ++ N+M +     +  T+N +IE  C+ G++    E    + + G
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG 572

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA- 246
           +  D  +Y+ LI  +   G   EA   +  L +   +     Y  ++ G  R G+ ++A 
Sbjct: 573 IVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEAL 632

Query: 247 ----------------------------------FCFFSEMKIKGHPPNRPVYTMLITMC 272
                                             F    EM  +G  P+  +YT +I   
Sbjct: 633 SVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAK 692

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            + G F EA      M   G  P    +  V +GL   G  + AE
Sbjct: 693 SKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 37/349 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++ S  T + ++    + GL+ +AV++FN+   +N +   + YN ++   CE   
Sbjct: 498 MTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD 557

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+  ++ M  KG VPD  +Y  L++  C +G+  EA+ F+  +              
Sbjct: 558 MSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTG 617

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G LE A  +  +M+++G  LDL  +  LI+   K  + +    +   +   G
Sbjct: 618 LLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRG 677

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  +I A SK G   EAF +   ++ +G  P    Y  +I G+ + G  ++A 
Sbjct: 678 LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAE 737

Query: 248 CFFSEMK-----------------------------------IKGHPPNRPVYTMLITMC 272
              S+M+                                   +KG   N   Y MLI   
Sbjct: 738 VLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGF 797

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            R GR  EA+  +  M   G++P   C    T   + C ++D+ + IEL
Sbjct: 798 CRQGRIEEASELITRMIGDGVSP--DCITYTTMINELCRRNDVKKAIEL 844



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 134/338 (39%), Gaps = 35/338 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M+     V+    +++I+   K   V  AV +       + +  V+ Y +L++ LC+
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK 309

Query: 65  VKLF-----------------------------------HGAYALIRRMIRKGFVPDKRT 89
           V+ F                                     A  L++R++  G  P+   
Sbjct: 310 VQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFV 369

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y  L+++ C   K  EA+     M   G  P      +L+      G L++A   + +M+
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMV 429

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G  L +  +NSLI   CK G++         +    L   V TY  L+      G I+
Sbjct: 430 DTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKIN 489

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A RL H +   G  P    +  ++ G+FR G   DA   F+EM      PNR  Y ++I
Sbjct: 490 KALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                 G   +A  +L EMTE G+ P +  +  +  GL
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGL 587



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 120/279 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +  A E+     A  C   ++ YN L+  LC+ +    A  + + +  K   PD  TY  
Sbjct: 243 LSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCT 302

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           LV   C   +     E + EM    F+P       LV+GL   G +E A  +V +++  G
Sbjct: 303 LVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFG 362

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +L  +N+LI+++CK  +      ++  + K+GL  +  TY ILI    + G +D A 
Sbjct: 363 VSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTAL 422

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  +V+ G K     Y  +I G  + G    A  F +EM  K   P    YT L+   
Sbjct: 423 SFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGY 482

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              G+  +A     EMT  G+ P    F  +  GL   G
Sbjct: 483 CSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           KLF G   L++ M  +G  PD   Y  +++A   +G  +EA      M ++G  P     
Sbjct: 664 KLFFG---LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTY 720

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF--CVEMYYSV 183
             ++ GL  AG++  A+ + +KM     V +  T+   ++ + K GEV+    VE++ ++
Sbjct: 721 TAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK-GEVDMQKAVELHNAI 779

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K GL A+ +TY +LI    + G I+EA  L+  ++ DG  P    Y  +I  + RR   
Sbjct: 780 LK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             A   ++ M  KG  P+R  Y  LI  C   G   +A     EM   GL P
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIP 890



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 131/302 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +TLS ++    K      A+E+FN   +   +  V +Y  ++ +LCE+K    A  +I  
Sbjct: 193 RTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAH 252

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G   +   Y +L++  C   K+ EA    ++++ K   P V     LV GL     
Sbjct: 253 MEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQE 312

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E   +M+++M+   F       +SL+E + K G++E  + +   V   G+  ++  Y  
Sbjct: 313 FEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNA 372

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI ++ K     EA  L   + + G +P    Y+ +I    RRG+ D A  F  EM   G
Sbjct: 373 LIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTG 432

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   Y  LI    + G    A  ++ EM    L P    +  +  G  + GK + A 
Sbjct: 433 LKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKAL 492

Query: 318 KI 319
           ++
Sbjct: 493 RL 494



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 8/213 (3%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y S++ A  +   F  A+ +   MI +G VP++ TY  ++N  C +G + EA+    +
Sbjct: 683 VIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSK 742

Query: 113 MSDKGFNPPVRGR----DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           M      P         D+L +G ++   ++ A ++ N ++K G + +  T+N LI   C
Sbjct: 743 MQPVSSVPNQVTYGCFLDILTKGEVD---MQKAVELHNAILK-GLLANTATYNMLIRGFC 798

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G +E   E+   +   G+  D  TY  +I  + +   + +A  L +++ E G +P   
Sbjct: 799 RQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRV 858

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            Y  +I G    G+   A    +EM  +G  PN
Sbjct: 859 AYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 1/244 (0%)

Query: 74  LIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           + + MI K   +P+ RT + L++          A E   +M   G  P V     +++ L
Sbjct: 178 VFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSL 237

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                L  AK+M+  M   G  +++  +N LI+ +CK  +V   V +   +    L  DV
Sbjct: 238 CELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDV 297

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  + K    +    ++  ++     P  +  + +++G+ +RG+ ++A      
Sbjct: 298 VTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKR 357

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +   G  PN  VY  LI    +G +F EA      M ++GL P    + ++ D     GK
Sbjct: 358 VVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGK 417

Query: 313 HDLA 316
            D A
Sbjct: 418 LDTA 421



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 52/105 (49%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A  LI RMI  G  PD  TY  ++N  C    +++A E    M+
Sbjct: 790 YNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           +KG  P     + L+ G   AG +  A ++ N+M++QG + + +T
Sbjct: 850 EKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 77/178 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V+ A  + +K    +     + Y   L  L + ++       +   
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNA 778

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG + +  TY +L+  +C  G++ EA E +  M   G +P       ++  L     +
Sbjct: 779 ILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A ++ N M ++G   D   +N+LI   C +GE+    E+   + + GL  +  T +
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTSR 896



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 1   MWKTIELMKPY--NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           M K +EL       L  +  T +++I  F + G ++ A E+  +          + Y ++
Sbjct: 769 MQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTM 828

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC       A  L   M  KG  PD+  Y  L++  C +G+M +A E   EM  +G 
Sbjct: 829 INELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGL 888

Query: 119 NP 120
            P
Sbjct: 889 IP 890


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 142/279 (50%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++    T +++++ F K G V  A  V         +  V+ YNSL+     VK  + A
Sbjct: 172 NINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKA 231

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++   M + G  PD ++Y+IL+N +C    M EA E L+EM  K   P V     L+ G
Sbjct: 232 KSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDG 291

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A ++V++M  +G   ++ T++S+++ +CK+ +V+  + +   +   G+  +
Sbjct: 292 LCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPN 351

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY ILI  + ++G +++A ++  +L+  GH      Y  +I+G   +G FD+A    S
Sbjct: 352 MYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLS 411

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           +M+  G  PN   Y ++I    +      A   L EM E
Sbjct: 412 KMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450



 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 152/298 (51%), Gaps = 2/298 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G + +AV++FNK    N    V  +  L+   C+      A  ++  M+ +G  P   TY
Sbjct: 156 GKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTY 215

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +    ++ +A+     M+  G +P ++   +L+ G      ++ A +++ +M  
Sbjct: 216 NSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHH 275

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +  + ++ T++SLI+ +CKSG++ + +++   +   G   ++ TY  ++ A+ K   +D 
Sbjct: 276 KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDN 335

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LL  +   G +P    Y  +IKG+ + G+ +DA   F ++ +KGH  N   YT++I 
Sbjct: 336 AIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQ 395

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
                G F EA   L +M + G  P ++ ++++   L    ++++AEK+  E++E + 
Sbjct: 396 GFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIETNF 453



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 146/338 (43%), Gaps = 45/338 (13%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F  +  VD+AV +FN+    N     + +N +L +L + K +H    L ++M  +G  P+
Sbjct: 37  FHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPN 96

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-LNA---------G 136
                IL+N++C  G +  A   L ++   G+ P     + L++GL LN          G
Sbjct: 97  LVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVG 156

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE---------------------- 174
            L+ A  + NKMI +    D+ TF  L++  CK G V+                      
Sbjct: 157 KLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYN 216

Query: 175 ------FCVE-------MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
                 F V+       ++ ++ +LG+  D+ +Y ILI    K  M+DEA  LL  +   
Sbjct: 217 SLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHK 276

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
              P    Y+ +I G+ + G+   A     EM  +G PPN   Y+ ++    +  +   A
Sbjct: 277 QIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNA 336

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              L +M   G+ P    + ++  GL   GK + A K+
Sbjct: 337 IALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 105/209 (50%), Gaps = 3/209 (1%)

Query: 1   MWKTIELMKP-YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M + +EL+K  ++  + P   T S +I+   K G +  A+++ ++         ++ Y+S
Sbjct: 263 MDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSS 322

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L ALC+      A AL+ +M  +G  P+  TY IL+   C SGK+ +A++  +++  KG
Sbjct: 323 ILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
            N  V    +++QG  + G  + A  +++KM   G + + +T+  +I ++ K  E E   
Sbjct: 383 HNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAE 442

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           ++   + +      V+    LI ++   G
Sbjct: 443 KLLCEMIETNFDGRVALTNDLIASIWVTG 471


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 141/291 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A++  N   ++ C+  V+ +N +L ++C    +  A  L+  M
Sbjct: 280 TYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDM 339

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C    +  A + L++M   G  P     + L+ G      +
Sbjct: 340 LRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKM 399

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+ +G   D+ T+N+L+  +CK G+V+  VE+   +   G    + TY  +
Sbjct: 400 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTV 459

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K G  + A  LL  +   G KP    Y+ +++G+ R G+ D+A   F +M+    
Sbjct: 460 IDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSI 519

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y  ++    +  +   A ++L  M E G  P    + ++ +G+ +
Sbjct: 520 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIAD 570



 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 148/305 (48%), Gaps = 5/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G +D A+EV  +    +    V+ YN++L +LC+      A  ++ R 
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 234

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   PD  TY IL+ A C+   + +A + L EM  KG  P V   ++L+ G+   G L
Sbjct: 235 LQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 294

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G       +   + + G    V T+ IL
Sbjct: 295 DEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNIL 354

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +  ++  A  +L  + + G  P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 355 INFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 414

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+T   + G+   A   L +++  G +P+   ++ V DGL   GK + A  
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA-- 472

Query: 319 IELLE 323
           +ELLE
Sbjct: 473 VELLE 477



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 143/304 (47%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE       V  A+++ ++     C+  V+ YN L+  +C+      A   +  M
Sbjct: 245 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 304

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  T+ I++ + CS+G+  +A+  L +M  KG +P V   ++L+  L     L
Sbjct: 305 PSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLL 364

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ KM K G V +  ++N L+   C+  +++  +E    +   G   D+ TY  L
Sbjct: 365 GRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 424

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G +D A  +L+ L   G  P    Y  +I G+ + G+ + A     EM+ KG 
Sbjct: 425 LTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGL 484

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+   GR G+  EA     +M  + + P +  ++ +  GL  C     +  
Sbjct: 485 KPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL--CKAQQTSRA 542

Query: 319 IELL 322
           I+ L
Sbjct: 543 IDFL 546



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 5/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+   SL+   C       A  ++  +   G VPD  TY +L+  +C SG++ +A E L+
Sbjct: 141 VIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLE 200

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            MS     P V   + +++ L ++G L+ A +++++ +++    D+ T+  LIE  C   
Sbjct: 201 RMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDS 257

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   +++   + K G   DV TY +LI  + K G +DEA + L+N+   G KP    + 
Sbjct: 258 GVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHN 317

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I++ M   G++ DA    S+M  KG  P+   + +LI    R      A + L +M + 
Sbjct: 318 IILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 377

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G  P S  ++ +  G   C +  +   IE LE+
Sbjct: 378 GCVPNSLSYNPLLHGF--CQEKKMDRAIEYLEI 408



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 130/250 (52%), Gaps = 7/250 (2%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           + RMI +G +PD      L+  +C SGK ++A   ++ + + G  P V   ++L+ G   
Sbjct: 129 LERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCK 188

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           +G ++ A +++ +M       D+ T+N+++ ++C SG+++  +E+     +     DV T
Sbjct: 189 SGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVIT 245

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ILI A      + +A +LL  + + G KP    Y  +I G+ + G+ D+A  F + M 
Sbjct: 246 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 305

Query: 255 IKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + L  C K 
Sbjct: 306 SYGCKPNVITHNIILRSMCST-GRWMDAERLLSDMLRKGCSPSVVTFNILINFL--CRKR 362

Query: 314 DLAEKIELLE 323
            L   I++LE
Sbjct: 363 LLGRAIDVLE 372



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 35/225 (15%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S  T +++I    +  L+  A++V  K     C    L YN LL   C+ K    A  
Sbjct: 345 SPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIE 404

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  M+ +G  PD  TY  L+ A C  GK+  A E L ++S KG +P +   + ++ GL 
Sbjct: 405 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLT 464

Query: 134 NAGYLESAKQMVNKMIKQGFVLDL-----------------------------------E 158
             G  E A +++ +M ++G   D+                                    
Sbjct: 465 KVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAV 524

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           T+N+++  +CK+ +    ++    + + G     +TY ILI  ++
Sbjct: 525 TYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIA 569



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 82/181 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G VD AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 420 TYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEM 479

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  TY+ L+      GK+ EA +   +M      P     + ++ GL  A   
Sbjct: 480 RRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQT 539

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A   +  M+++G      T+  LIE I   G  E  +E+   +C  G     S  +++
Sbjct: 540 SRAIDFLAYMVEKGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQVV 599

Query: 199 I 199
           +
Sbjct: 600 V 600



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ ++ L+  G LE   + + +MI QG + D+    SLI   C+SG+ +    +   +  
Sbjct: 110 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILEN 169

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV TY +LI    K+G ID+A  +L  +      P    Y  I++ +   G+  +
Sbjct: 170 SGAVPDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKE 226

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A         +   P+   YT+LI          +A   L EM + G  P    ++++ +
Sbjct: 227 AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 286

Query: 306 GLKNCGKHDLAEKIELL 322
           G+  C +  L E I+ L
Sbjct: 287 GI--CKEGRLDEAIKFL 301


>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 511

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 144/293 (49%), Gaps = 5/293 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I    + G +D A ++     +F C   V+ YN+L+  LC +     A +L+R +
Sbjct: 179 TVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREV 238

Query: 79  IRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
              G F PD  +Y ++++ +C   KM E      EM + G  P     + L+ G    G 
Sbjct: 239 CLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGD 298

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + SA  + +KM+ QG + D+ TF SLI    +  +V   ++M++ + +  + A + TY +
Sbjct: 299 MASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSV 358

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  +     + +A  +L  L E    P P +Y P+I G  + G  D+A    +EM++  
Sbjct: 359 LVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 418

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             P++  +T+LI      GR  EA  +  +M  +G  P     ++  + L++C
Sbjct: 419 CKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGCAPD----EITVNNLRSC 467



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 127/303 (41%), Gaps = 1/303 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           + L  ++  +   G +D + E+       N     ++YN L   L        A  L R 
Sbjct: 108 RLLGFLVSSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRE 167

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +IR  + P   T  IL+   C  G++ EA + L+++   G  P V   + L+ GL     
Sbjct: 168 LIRLRYKPVTYTVNILIRGLCRVGEIDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINE 227

Query: 138 LESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           ++ A+ ++ ++   G F  D+ ++  +I   CK  ++E    ++  +   G   +  T+ 
Sbjct: 228 VDRARSLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFN 287

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI    K G +  A  L   ++  G  P  + +  +I G FR  Q   A   + +M  K
Sbjct: 288 ALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEK 347

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +   Y++L++      R  +A + L  + E  + P    ++ V DG    G  D A
Sbjct: 348 NIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEA 407

Query: 317 EKI 319
            KI
Sbjct: 408 NKI 410



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 129/310 (41%), Gaps = 37/310 (11%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           L Y+ LL +LC   L H A  +   M   G +PD R    LV+++   G++  ++E L +
Sbjct: 73  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVSSYAIVGRLDVSRELLAD 132

Query: 113 M--SDKGFN---------------------------------PPVRGRDLLVQGLLNAGY 137
           +  ++ G N                                 P     ++L++GL   G 
Sbjct: 133 VQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILIRGLCRVGE 192

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYK 196
           ++ A +++  +   G + D+ T+N+LI  +C   EV+    +   VC  G    DV +Y 
Sbjct: 193 IDEAFKLLKDLRSFGCLPDVITYNTLIHGLCLINEVDRARSLLREVCLNGEFAPDVVSYT 252

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ++I    K   ++E   L   ++  G  P    +  +I G  + G    A   +S+M ++
Sbjct: 253 MIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQ 312

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDL 315
           G  P+   +T LI    R  +  +A +   +M E  +      + ++  GL N  + H  
Sbjct: 313 GCLPDVATFTSLINGHFRVRQVHQAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKA 372

Query: 316 AEKIELLEVS 325
            + + LL  S
Sbjct: 373 RDILRLLNES 382



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 2/212 (0%)

Query: 12  NLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N   +P T +   +I+ FGK G + +A+ +++K     C   V  + SL+     V+  H
Sbjct: 276 NSGTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVH 335

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +  +M  K       TY++LV+  C++ ++ +A++ L+ +++    P     + ++
Sbjct: 336 QAMDMWHKMNEKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVI 395

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G   +G ++ A ++V +M       D  TF  LI   C  G +   +  +  +  +G  
Sbjct: 396 DGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGCA 455

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            D  T   L   + KAGM  EA R+   L ++
Sbjct: 456 PDEITVNNLRSCLLKAGMPGEAARVKEVLAQN 487



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 4/155 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW     M   N+  S  T S+++     +  +  A ++       +      +YN ++ 
Sbjct: 340 MWHK---MNEKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVID 396

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  ++  M      PDK T+ IL+   C  G+M EA  F  +M   G  P
Sbjct: 397 GYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFDKMLAVGCAP 456

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                + L   LL AG    A + V +++ Q   L
Sbjct: 457 DEITVNNLRSCLLKAGMPGEAAR-VKEVLAQNLTL 490


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 140/318 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK    M+   +     T S  +E   K    D A +VF +    +C    + YN ++ 
Sbjct: 229 VWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 288

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A+     M+  G  PD  TY  L+N  C  G+++EA+  L EMS  G  P
Sbjct: 289 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKP 348

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     LV G +  G    A  ++N+MI  G   +   +++LI  +CK G++    ++ 
Sbjct: 349 NVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 408

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K+G   D  TY  L+    +    D AF LL+ +   G  P    Y  +I G+ + 
Sbjct: 409 NEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQN 468

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  +A     EM  +G  PN  +Y  LI    + G    A   L  MT+  + P   C+
Sbjct: 469 GESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCY 528

Query: 301 DLVTDGLKNCGKHDLAEK 318
           + +  GL   G+ + AE+
Sbjct: 529 NSLIKGLSTVGRIEEAEE 546



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 138/318 (43%), Gaps = 7/318 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +KP     +P     +I    K G +  A E     T  N    +  YNSL+  L  V
Sbjct: 484 EGLKPNAFMYAP-----LIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTV 538

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A     ++ ++G VPD+ TY+ L++ +C +  + +A + LQ+M + G  P     
Sbjct: 539 GRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTY 598

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L++G   +   E    ++  M+  G   D   +  +I  + +S  +E    +   V K
Sbjct: 599 TDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEK 658

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D+  Y  LI  + K   +++A  LL  + ++G +P    Y  +I G  R G    
Sbjct: 659 NGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISR 718

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  +  KG  PN   YT LI    + G   +A +   +M + G+ P +  ++++  
Sbjct: 719 ARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLAT 778

Query: 306 GLKNCGKHDLAEKIELLE 323
           G  +    DL + + L E
Sbjct: 779 GCSDAA--DLEQALFLTE 794



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 153/369 (41%), Gaps = 70/369 (18%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV--------------K 66
           + +++ F K G    A ++ N+  +   Q   ++Y++L+  LC++              K
Sbjct: 354 ATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIK 413

Query: 67  LFH---------------------GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
           + H                     GA+ L+  M   G +P+  TY I++N  C +G+ +E
Sbjct: 414 VGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKE 473

Query: 106 AQEFLQEMSDKGFNPPV------------RGR------------------DL-----LVQ 130
           A   L+EM  +G  P               G                   DL     L++
Sbjct: 474 AGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIK 533

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G +E A++   ++ K+G V D  T++ LI   CK+  +E   ++   +   GL  
Sbjct: 534 GLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKP 593

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  L+    K+   ++   +L +++  G KP   +Y  +I+ + R    + AF   
Sbjct: 594 NADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVL 653

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +E++  G  P+  +Y+ LI+   +     +A   L EM + GL P   C++ + DG    
Sbjct: 654 TEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRS 713

Query: 311 GKHDLAEKI 319
           G    A  +
Sbjct: 714 GDISRARNV 722



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L ++++ + K+G V  A +V                N LL  L         + L   M 
Sbjct: 178 LDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFME 237

Query: 80  RKGFVPDKRTYA-----------------------------------ILVNAWCSSGKMR 104
             G  PD  TY+                                   ++++  C SG + 
Sbjct: 238 GAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVE 297

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA  F +EM D G +P       L+ GL   G L+ AK ++++M   G   ++  + +L+
Sbjct: 298 EAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLV 357

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           +   K G+     ++   +   G+  +   Y  LI  + K G +  A +LL+ +++ GH+
Sbjct: 358 DGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y P+++G F+    D AF   +EM+  G  PN   Y ++I    + G   EA N 
Sbjct: 418 PDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNL 477

Query: 285 LVEMTEMGLTP 295
           L EM   GL P
Sbjct: 478 LEEMISEGLKP 488



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 105/220 (47%), Gaps = 1/220 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ ++  + + G VPD   Y+ L++  C    M +A   L EM+ +G  P +   + L+ 
Sbjct: 649 AFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALID 708

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   +G +  A+ + + ++ +G + +  T+ +LI+  CK+G++    ++Y  +   G+  
Sbjct: 709 GFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAP 768

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y +L    S A  +++A  L   +   G+    SL++ +++G  +RG+  +     
Sbjct: 769 DAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHV-SLFSTLVRGFCKRGRLQETEKLL 827

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             M  +   PN      +IT  G+ G+  EA     E+ +
Sbjct: 828 HVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQ 867



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 115/238 (48%), Gaps = 2/238 (0%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +LV+ +  +G +R A + +  M D G  P  R  + L++ LL A  +E   ++   M   
Sbjct: 180 VLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGA 239

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+++ +E  CK+ + +   +++  + +     +  TY ++I  + ++G ++EA
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           F     +V+ G  P    Y  ++ G+ + G+  +A     EM   G  PN  VY  L+  
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDG 359

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             + G+  EA + L EM   G+ P    +D +  GL   G+   A K+  E+++V  R
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHR 417


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 140/304 (46%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K  N+  +  T +L+I+   + GLVD A+EVF +    NC      Y++L+  LC+ +  
Sbjct: 162 KSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERI 221

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A +L+  M  +G  P+   + +L++A C  G +  A + +  M  KG  P     + L
Sbjct: 222 DEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNAL 281

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V GL   G LE A  ++N+M+    V +  TF +LI      G       +  S+   G 
Sbjct: 282 VHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGH 341

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +   Y  LI  + K G  ++A  L   +V  G  P   +Y+ +I G+ R G+ D+A  
Sbjct: 342 RGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARG 401

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
           F SEMK KG+ PN   Y+ L+      G   +A     EM          C+ ++ +GL 
Sbjct: 402 FLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLC 461

Query: 309 NCGK 312
             GK
Sbjct: 462 KDGK 465



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 4/299 (1%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++ + +GK  L + AV++F++    F C+Q V  +NS+L  + +  LF+ A      ++ 
Sbjct: 101 VMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVA 160

Query: 81  K---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                  P+  T+ +++ A C  G + +A E  +E+  +   P       L+ GL     
Sbjct: 161 SKSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEER 220

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A  ++++M  +G   +L  FN LI  +CK G++    ++  ++   G   +  TY  
Sbjct: 221 IDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNA 280

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  +   G +++A  LL+ +V +   P    +  +I G   +G+  D       ++ +G
Sbjct: 281 LVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARG 340

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           H  N  VY+ LI+   + G+F +A     EM   G  P +  +  + DGL   GK D A
Sbjct: 341 HRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEA 399



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I  F   G   +   V     A   +    +Y+SL+  LC+   F+ A  L + M
Sbjct: 312 TFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEM 371

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P+   Y+ L++  C  GK+ EA+ FL EM +KG+ P       L++G   AG  
Sbjct: 372 VGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDS 431

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M     + +   ++ LI  +CK G+    + ++  +   G+  DV  Y  +
Sbjct: 432 HKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSM 491

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDG 222
           I     A ++++  +L + ++  G
Sbjct: 492 IHGFCNANLVEQGLKLFNQMLCQG 515



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/314 (20%), Positives = 120/314 (38%), Gaps = 37/314 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
             +++I    K G +  A ++ +      C    + YN+L+  LC       A +L+ +M
Sbjct: 242 AFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQM 301

Query: 79  IRKGFVPDKRTYAILVNAW-----------------------------------CSSGKM 103
           +    VP+  T+  L+N +                                   C  GK 
Sbjct: 302 VSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKF 361

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A E  +EM  KG  P       L+ GL   G L+ A+  +++M  +G++ +  T++SL
Sbjct: 362 NQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSL 421

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +    ++G+    + ++  +       +   Y ILI  + K G   EA  +   ++  G 
Sbjct: 422 MRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGI 481

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH--PPNRPVYTMLITMCGRGGRFVEA 281
           K     Y+ +I G       +     F++M  +G    P+   Y +L+           A
Sbjct: 482 KLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFRA 541

Query: 282 ANYLVEMTEMGLTP 295
            + L  M + G  P
Sbjct: 542 IDILNIMLDQGCDP 555



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 23/185 (12%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++I    K G    A+ V+ +  +   +  V+ Y+S++   C   L      L  +M+ 
Sbjct: 454 SILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLC 513

Query: 81  KGFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------------------FNP 120
           +G V  PD  TY IL+NA+C    +  A + L  M D+G                   NP
Sbjct: 514 QGPVVQPDVITYNILLNAFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNP 573

Query: 121 PVRGR---DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           P  GR   D LV  L+       A +++  M+ +  +    T+  +++ +CK   V   +
Sbjct: 574 PQDGREFLDELVVRLVKRQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKAI 633

Query: 178 EMYYS 182
              +S
Sbjct: 634 SECWS 638


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 6/314 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K      A EV  +            Y++L+  LC+      A  ++RRM
Sbjct: 286 TYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRM 345

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD   Y+ +++A+C SGK+ EAQ+ LQEM  +  +P V   + ++ GL   G +
Sbjct: 346 AGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKI 405

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+ ++ +M + G VL D+ T++++I  +CKS  +    ++   +CK G   DV TY  
Sbjct: 406 AEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTT 465

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K G ++EA  LL  +   G  P    Y  +I G+ +  + D+A     EM+  G
Sbjct: 466 IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG 525

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE--MGLTPISRCFDLVTDGLKNCGKHDL 315
            PPN   Y  ++      GR  EA   +  M +     +P +  +  + + L +    DL
Sbjct: 526 CPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMS---SDL 582

Query: 316 AEKIELLEVSLRSV 329
            ++ E L   ++S 
Sbjct: 583 VQEAEQLLEQMKST 596



 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 158/353 (44%), Gaps = 36/353 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+      +  T +++++   K  +V  A +V  K         V+ +NSL+   
Sbjct: 200 KLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGF 259

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L+  M+ KG  P+  TY+ L++  C S K  EA+E L+EM  +G  P  
Sbjct: 260 CKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDA 319

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVE 178
                L+ GL  A  +E A+QM+ +M   G   D+  ++S+I   CKSG++    +   E
Sbjct: 320 FTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQE 379

Query: 179 M-----------YYSV----CKLGLCA-----------------DVSTYKILIPAVSKAG 206
           M           Y +V    CKLG  A                 DV TY  +I  + K+ 
Sbjct: 380 MRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSD 439

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           M+ EA +LL  + + G  P    Y  II G+ + G+ ++A      MK  G  PN   YT
Sbjct: 440 MLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYT 499

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            LI+   +  +  EA   + EM   G  P    ++ + +GL   G+   A+++
Sbjct: 500 TLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQL 552



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 150/320 (46%), Gaps = 6/320 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    +    T + II      G +D A++      +  C   V+ Y +L+ A   
Sbjct: 135 LEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLR---SMGCDPNVVTYTALIAAFAR 191

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  L+  M  +G  P+  TY +LV+A C    +  AQ+ +++M + GF P V  
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 251

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + LV G    G ++ A++++  M+ +G   ++ T+++LI+ +CKS +     E+   + 
Sbjct: 252 FNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMK 311

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  D  TY  LI  + KA  I+EA ++L  +   G  P   +Y+ II    + G+  
Sbjct: 312 TRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLL 371

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLV 303
           +A     EM+ +   P+   Y  +I    + G+  EA   L +M E G + P    +  V
Sbjct: 372 EAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTV 431

Query: 304 TDGLKNCGKHDLAEKIELLE 323
            +GL  C    L E  +LL+
Sbjct: 432 INGL--CKSDMLVEAQKLLD 449



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 34/309 (11%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK------------------- 87
           +C+  V  YN ++   C     H A  L+  M   GF PD                    
Sbjct: 107 SCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGA 166

Query: 88  -------------RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
                         TY  L+ A+  + K+ EA + L+EM ++G  P +   ++LV  L  
Sbjct: 167 MDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              + +A+ +V KMI+ GF  ++ TFNSL++  CK G V+   ++   +   G+  +V T
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  + K+    EA  +L  +   G  P    Y+ +I G+ +  + ++A      M 
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  P+  VY+ +I    + G+ +EA   L EM +   +P    ++ V DGL   GK  
Sbjct: 347 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGK-- 404

Query: 315 LAEKIELLE 323
           +AE   +LE
Sbjct: 405 IAEAQVILE 413



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 3/265 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +NSLL  L   K    A  L R  +     PD  +Y I+++ +C++G +  A E L+EM 
Sbjct: 80  WNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMK 139

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P       ++  + NAG L+ A   +  M   G   ++ T+ +LI    ++ ++E
Sbjct: 140 SAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFARAKKLE 196

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +++   + + G   ++ TY +L+ A+ K  M+  A  ++  ++E G  P    +  ++
Sbjct: 197 EAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLV 256

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +RG  DDA      M  KG  PN   Y+ LI    +  +F+EA   L EM   G+T
Sbjct: 257 DGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVT 316

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P +  +  +  GL    K + AE++
Sbjct: 317 PDAFTYSALIHGLCKADKIEEAEQM 341



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFA 61
           KT++ M+    S    T + +I+   K G +  A  +  +   + +    V+ Y++++  
Sbjct: 375 KTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVING 434

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+  +   A  L+ RM + G  PD  TY  +++  C  G++ EA+  LQ M   G  P 
Sbjct: 435 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 494

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ GL  A  ++ A++++ +M   G   +L T+N+++  +C SG ++   ++  
Sbjct: 495 VVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQ 554

Query: 182 SV--CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +   +     D +TY+ ++ A+  + ++ EA +LL  +
Sbjct: 555 RMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 3/156 (1%)

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           GF     ++NSL++ + +  +     +++ S        DV +Y I+I     AG +  A
Sbjct: 72  GFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAA 131

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             LL  +   G  P    + PII  M   G  D A      M   G  PN   YT LI  
Sbjct: 132 LELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAA 188

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             R  +  EA   L EM E G  P    ++++ D L
Sbjct: 189 FARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDAL 224


>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49730-like [Cucumis sativus]
          Length = 641

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 149/312 (47%), Gaps = 2/312 (0%)

Query: 1   MWKTIELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   ++P+   +++  F    +V  AVEV ++   + C+    ++  LL
Sbjct: 160 VWALIEEMRKENPYMLTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLL 219

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  F P+ R +  L+  WC  GK+ EA+  L ++ + GF 
Sbjct: 220 DALCKNGSVKEAASLFEDM-RVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFE 278

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ +M K     +  +F  LI++ CK+ +++  + +
Sbjct: 279 PDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRI 338

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  +   G  ADV TY  LI    K G  D+A+ +L ++++ GH P    Y  I+    +
Sbjct: 339 FTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEK 398

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++      EM+  G  P+  +Y  +I +  + G   EA     EM   GL P    
Sbjct: 399 KEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDT 458

Query: 300 FDLVTDGLKNCG 311
           + L+  G  + G
Sbjct: 459 YILMVHGFLSQG 470


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 2/297 (0%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + + GL+ +A  +F       C +    Y +LL  LC   +   A ++   M   G  PD
Sbjct: 117 YCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              YA +V+  C +G+ REA+  L +   +GF P V   + L+ G  N G LE A  +  
Sbjct: 177 PHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFE 236

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M   G   ++ T+  LI   CKS +++  + ++  +   GL  +V TY  LI      G
Sbjct: 237 RMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDG 296

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D A+RLL ++   G  P     + +I  + +  +  +A      +  KG   N  VYT
Sbjct: 297 QLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYT 356

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            LI    + GRF  A   +  +   G  P +  +  + DGL  C + +L+E + +L+
Sbjct: 357 SLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGL--CRQKELSEAMLVLD 411



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 130/289 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ +   G ++ AV+VF +     C   V  Y  L+   C+ +    A  L  RM+  G
Sbjct: 218 LIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAG 277

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  TY  L+   CS G++  A   LQ M + G  P      +L+  L     +  A+
Sbjct: 278 LVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQ 337

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  +I++G  ++   + SLI+ +CK+G       +  ++   G   D  TY  LI  +
Sbjct: 338 LLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGL 397

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   + EA  +L +++E G +P P  Y  II  + R    D +     +M   G  P+ 
Sbjct: 398 CRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDV 457

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             YT+ +      GR  +A + ++ M + G+ P    ++ +  G  N G
Sbjct: 458 FTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 143/310 (46%), Gaps = 16/310 (5%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+   L  +  T S++I+   KH  V  A  +         +   ++Y SL+  
Sbjct: 302 YRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDG 361

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+   F  A  L++ ++ +GFVPD  TY+ L++  C   ++ EA   L +M +KG  P 
Sbjct: 362 LCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPS 421

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++  L+     + +K++++KMI  G   D+ T+   + + C  G +E    M  
Sbjct: 422 PVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMML 481

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G+C ++ TY  LI   +  G+  +AF    ++V +G KP    Y  +++ + ++ 
Sbjct: 482 HMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKE 541

Query: 242 QFDD------AFCFFSEMK---------IKGHPPNR-PVYTMLITMCGRGGRFVEAANYL 285
             ++      +    +EMK         +K   P+   +Y   +T   R  R  EA   L
Sbjct: 542 SSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILL 601

Query: 286 VEMTEMGLTP 295
           +EM    LTP
Sbjct: 602 IEMQSANLTP 611



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 134/289 (46%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G+V  A+ VF    A  C     +Y +++  LC       A  L+   + +GF P+   Y
Sbjct: 156 GMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVY 215

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +C+ G +  A +  + M   G +P VR    L+ G   +  L+ A  + ++M+ 
Sbjct: 216 NALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVD 275

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G V ++ T+ +LI+  C  G+++    +  S+   GL  +  T  +LI A+ K   + E
Sbjct: 276 AGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGE 335

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LL +L++ G K    +Y  +I G+ + G+F  A      +  +G  P+   Y+ LI 
Sbjct: 336 AQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLID 395

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              R     EA   L +M E G+ P    + ++ D L      D ++KI
Sbjct: 396 GLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKI 444



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 124/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    +  P   + ++      G    A  + +   A   +  V++YN+L+   C V  
Sbjct: 168 MQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGD 227

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +  RM   G  P+ RTY  L++ +C S K+  A      M D G  P V     
Sbjct: 228 LELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+QG  + G L+ A +++  M   G V +  T + LI+ +CK   V     +  S+ + G
Sbjct: 288 LIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKG 347

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  LI  + KAG    A RL+  LV  G  P    Y+ +I G+ R+ +  +A 
Sbjct: 348 IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAM 407

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               +M  KG  P+   YT++I    R      +   L +M   G+ P
Sbjct: 408 LVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKP 455



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S +   C   L   A  L   M  +G V    TY  L++  C +G +REA      M 
Sbjct: 110 YTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQ 169

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P       +V GL  AG    A+ +++  + +GF  ++  +N+LI+  C  G++E
Sbjct: 170 ADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLE 229

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V+++  +   G   +V TY  LI    K+  +D A  L   +V+ G  P    Y  +I
Sbjct: 230 LAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALI 289

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G    GQ D A+     M+  G  PN    ++LI    +  R  EA   L  + + G+ 
Sbjct: 290 QGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIK 349

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
                +  + DGL   G+   A+++
Sbjct: 350 VNEIVYTSLIDGLCKAGRFAAADRL 374



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 129/290 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M     S + +T + +I  F K   +D A+ +F++         V+ Y +L+   C  
Sbjct: 236 ERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSD 295

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY L++ M   G VP++ T ++L++A C   ++ EAQ  L  +  KG        
Sbjct: 296 GQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVY 355

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL  AG   +A +++  ++ QGFV D  T++SLI+ +C+  E+   + +   + +
Sbjct: 356 TSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMME 415

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+     TY I+I  + +    D + ++L  ++  G KP    Y   ++     G+ +D
Sbjct: 416 KGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMED 475

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A      M   G  PN   Y  LI      G   +A +    M   G  P
Sbjct: 476 AEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKP 525



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 4/264 (1%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+ L AL   ++     +   RM  +      RTY  L+NA+C +G +  ++  L  +  
Sbjct: 45  NAFLMALARHRMLADMESFASRMPARNL----RTYTTLINAYCLAGDLPASKRHLSSLLR 100

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            GF P        V G   AG L  A ++   M  +G V    T+ +L+  +C +G V  
Sbjct: 101 AGFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVRE 160

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + ++  +   G   D   Y  ++  +  AG   EA  LL + + +G +P   +Y  +I 
Sbjct: 161 AMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALID 220

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G    G  + A   F  M + G  PN   YT LI+   +  +   A      M + GL P
Sbjct: 221 GYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVP 280

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               +  +  G  + G+ D A ++
Sbjct: 281 NVVTYTALIQGQCSDGQLDCAYRL 304



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/329 (19%), Positives = 115/329 (34%), Gaps = 51/329 (15%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S +I+   +   +  A+ V +       Q   + Y  ++  L       G+  ++ +
Sbjct: 388 HTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDK 447

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI  G  PD  TY I V ++C  G+M +A+  +  M D G  P +   + L+ G  N G 
Sbjct: 448 MIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGL 507

Query: 138 LESA----KQMV-----------------------------------------------N 146
              A    K MV                                                
Sbjct: 508 TSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLE 567

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M+K     +++ +N  + ++C+   ++    +   +    L      Y  +I    +  
Sbjct: 568 EMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLK 627

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           M+ EA   + ++V+ G+ P    Y  II  +   G    A   F +M  K +      + 
Sbjct: 628 MLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWR 687

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +LI    + G   E ++ L  M E    P
Sbjct: 688 ILIDGLLQKGYVAECSSLLSVMEEKNYRP 716


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 3/320 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           TIE M+   L  +    + +I++F +  ++D A E   K         V  YN L+    
Sbjct: 299 TIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYG 358

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            + +F   + ++  M   G  P+  +Y  L+N  C  GK+ EA+  L++M  +G  P   
Sbjct: 359 RLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNAN 418

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++L+ G    G L  A +  ++M K G    + T+NSLI+ +CK G+++   EM++ +
Sbjct: 419 IYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLI 478

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G C DV TY  LI   S AG   +   L   + + G KP  + + P+I G  + G  
Sbjct: 479 TSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG-I 537

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
                 F+EM      P+R VY  +I      G   +A +   EM +MG+ P ++ ++ +
Sbjct: 538 KLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSL 597

Query: 304 TDGLKNCGKHDLAEKIELLE 323
             G    GK  L+E  +L++
Sbjct: 598 ILGHLKEGK--LSETKDLVD 615



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 150/354 (42%), Gaps = 36/354 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   NL  +  T + +I+ + K G VD A+ +  +      +  ++ +NSLL  LC+ + 
Sbjct: 127 MSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARR 186

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAI----------------------------------- 92
              A  ++  +   GFVPD  TY+I                                   
Sbjct: 187 IEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCS 246

Query: 93  -LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L+N  C  GK+ +A+E L+ + + G  P     + +V G    G ++ A   + +M  +
Sbjct: 247 ILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESR 306

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   +   FNS+I+  C+   ++   E    +   G+   V TY ILI    +  +    
Sbjct: 307 GLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRC 366

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           F++L  + E+G KP    Y  +I  + + G+  +A     +M  +G  PN  +Y MLI  
Sbjct: 367 FQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDG 426

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
               G+  EA  +  EM++ G+      ++ +  GL   GK   AE++  L  S
Sbjct: 427 SCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITS 480



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 128/294 (43%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + +   T S+++    K G V+ A EV             ++YN+++   C++     A 
Sbjct: 238 VKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAI 297

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             I +M  +G  P+   +  +++ +C    + +A+E++++M  KG  P V   ++L+ G 
Sbjct: 298 LTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY 357

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                     Q++ +M + G   ++ ++ SLI  +CK G++     +   +   G+  + 
Sbjct: 358 GRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNA 417

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + Y +LI      G + EA R    + ++G       Y  +IKG+ + G+  +A   F  
Sbjct: 418 NIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFL 477

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +   GH P+   Y  LI+     G   +       M ++GL P    F  +  G
Sbjct: 478 ITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG 531



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 36/323 (11%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           + +I+E   +    DN +++F +      +   L+Y   + A  ++     A  L   M 
Sbjct: 34  VRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMK 93

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+  VP+   Y +L+   C   ++R+A++   EMS +   P     + L+ G   AG ++
Sbjct: 94  RRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVD 153

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE------------------------- 174
            A  +  +M K+     + TFNSL+  +CK+  +E                         
Sbjct: 154 VAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIF 213

Query: 175 -----------FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                        +++Y      G+  D  T  IL+  + K G +++A  +L +LVE G 
Sbjct: 214 DGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGL 273

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y  I+ G  + G  D A     +M+ +G  PN   +  +I          +A  
Sbjct: 274 VPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEE 333

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
           ++ +M   G+ P    ++++ DG
Sbjct: 334 WVKKMVGKGIAPSVETYNILIDG 356



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 118/260 (45%), Gaps = 7/260 (2%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L E K F     L + M+  GF PDK  Y   + A    G ++ A E  + M  +   P
Sbjct: 40  SLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVP 99

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   ++L+ GL     +  A+++  +M  +  V +  TFN+LI+  CK+GEV+  + + 
Sbjct: 100 NVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLR 159

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +   + T+  L+  + KA  I+EA  +L+ +  +G  P    Y+ I  G+ + 
Sbjct: 160 ERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKS 219

Query: 241 GQFDD----AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
              DD    A   + E   KG   +    ++L+    + G+  +A   L  + E GL P 
Sbjct: 220 ---DDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPG 276

Query: 297 SRCFDLVTDGLKNCGKHDLA 316
              ++ + +G    G  D A
Sbjct: 277 EVIYNTIVNGYCQIGDMDRA 296



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 133/355 (37%), Gaps = 71/355 (20%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +  A+E+F           V +YN L+  LC+ K    A  L   M  +  VP++ 
Sbjct: 78  KLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRV 137

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  L++ +C +G++  A    + M  +   P +   + L+ GL  A  +E A+ M+N++
Sbjct: 138 TFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEI 197

Query: 149 IKQGFV------------------------------------LDLETFNSLIETICKSGE 172
              GFV                                    +D  T + L+  +CK G+
Sbjct: 198 KCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGK 257

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG-------------------------- 206
           VE   E+  S+ + GL      Y  ++    + G                          
Sbjct: 258 VEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS 317

Query: 207 ---------MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
                    MID+A   +  +V  G  P    Y  +I G  R   F   F    EM+  G
Sbjct: 318 VIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENG 377

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN   Y  LI    + G+ +EA   L +M   G+ P +  ++++ DG    GK
Sbjct: 378 EKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGK 432



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 98/214 (45%), Gaps = 5/214 (2%)

Query: 58  LLFALC-EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L ++C E K+      L   M ++G +P      ++V +   S K     +  +EM   
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGL 60

Query: 117 GFNPP--VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           GF P   V GR +L    +  G L+ A ++   M ++  V ++  +N LI  +CK   + 
Sbjct: 61  GFRPDKLVYGRAMLAA--VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIR 118

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +++  +    L  +  T+  LI    KAG +D A  L   + ++  +P    +  ++
Sbjct: 119 DAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLL 178

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            G+ +  + ++A C  +E+K  G  P+   Y+++
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTYSII 212



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L  +  T   +I    K G+      +FN+    N     ++YN+++    E 
Sbjct: 511 ETMKKLGLKPTINTFHPLISGCSKEGIKLKET-LFNEMLQMNLSPDRVVYNAMIHCYQET 569

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A++L + M+  G  PD +TY  L+      GK+ E ++ + +M  KG  P     
Sbjct: 570 GHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTY 629

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEM 179
            LL+QG  +      A     +M++ GF+ ++   N L   + K G ++     C EM
Sbjct: 630 SLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEM 687



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 102/261 (39%), Gaps = 34/261 (13%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A+  F++ +       ++ YNSL+  LC++     A  +   +   G  PD  TY
Sbjct: 431 GKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITY 490

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG-----------LLN----- 134
             L++ + ++G  ++  E  + M   G  P +     L+ G           L N     
Sbjct: 491 NSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEGIKLKETLFNEMLQM 550

Query: 135 ------------------AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
                              G+++ A  +  +M+  G   D +T+NSLI    K G++   
Sbjct: 551 NLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSET 610

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            ++   +   GL  +  TY +LI         + A+     ++E+G  P   +   +  G
Sbjct: 611 KDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCICNELSTG 670

Query: 237 MFRRGQFDDAFCFFSEMKIKG 257
           + + G+  +A    SEM   G
Sbjct: 671 LRKDGRLQEAQSICSEMIANG 691



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 57/139 (41%)

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+Y  + + G        ++++ ++ ++   D    L   +V  G +P   +Y   +   
Sbjct: 17  ELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAA 76

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G    A   F  MK +   PN  VY +LI    +  R  +A     EM+   L P  
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNR 136

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             F+ + DG    G+ D+A
Sbjct: 137 VTFNTLIDGYCKAGEVDVA 155



 Score = 41.2 bits (95), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 60/145 (41%)

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           ++E++ +S + +  ++++  +  LG   D   Y   + A  K G +  A  L   +    
Sbjct: 37  IVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRK 96

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P   +Y  +I G+ +  +  DA   F EM ++   PNR  +  LI    + G    A 
Sbjct: 97  VVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAI 156

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
                M +  + P    F+ +  GL
Sbjct: 157 GLRERMKKEKVEPSIITFNSLLSGL 181


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 137/287 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K   V  A++VF +      +  V+ YNSL+  LC     + A AL  +M
Sbjct: 238 TFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +     P+  T+  L+N +C +  +++A E   +M  +G  P V   ++L+        +
Sbjct: 298 VNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENM 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M+ +G   D+ T+N LI  +C+ G++E    +   +    L AD+ TY IL
Sbjct: 358 EDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNIL 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++   G + +A RLL  +   G KP    Y  +I G  + G    A    S+M+  G 
Sbjct: 418 IDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGR 477

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
             N   Y +LI    +  +  +A   L EM E GL P    +++VT+
Sbjct: 478 LANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTE 524



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 138/291 (47%), Gaps = 3/291 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE---VKLFHGAYALI 75
           + +++I    K G ++ A ++            V+ YN+L+   C+   +   + A A++
Sbjct: 165 SFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAIL 224

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M   G  P++ T+ IL++ +C    +  A +   EM+ +G  P V   + L+ GL N 
Sbjct: 225 KEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNN 284

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +  A  + ++M+      ++ T N+L+   CK+  V+   E++  + K G+  +V+TY
Sbjct: 285 GKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTY 344

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A  K   +++AF L   ++  G  P  S Y  +I G+ R+G  + A    SEM  
Sbjct: 345 NILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDT 404

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           K    +   Y +LI      G   +A   L EM   GL P    ++ + DG
Sbjct: 405 KHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDG 455



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 112/223 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K+ +V  A E+F+          V  YN L+ A C+ +    A+AL R M
Sbjct: 308 THNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIM 367

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY  L+   C  G +  A+  + EM  K     +   ++L+  L N G +
Sbjct: 368 LGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEM 427

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++++M ++G      T+N++I+  CK G +   + +   + K+G  A+V+TY +L
Sbjct: 428 KKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVL 487

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           I    K   +++A  LL+ ++E G  P    Y  + + M  +G
Sbjct: 488 IKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 122/281 (43%), Gaps = 5/281 (1%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E F + + +  +  V   N L+  L +V        + + MIR+   P   ++ I++N  
Sbjct: 114 EAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGL 173

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG---LLNAGYLESAKQMVNKMIKQGFV 154
           C  GK+ +A + +++M  +G +  V   + L+ G   +   G +  A  ++ +M   G  
Sbjct: 174 CKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGIC 233

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  TFN LI+  CK   V   ++++  + + G+  +V TY  LI  +   G ++EA  L
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +V    KP    +  ++ G  +      A   F +M  +G  PN   Y +LI    +
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                +A      M   G+ P    ++ +  GL  C K DL
Sbjct: 354 DENMEDAFALYRIMLGKGVCPDVSTYNCLIAGL--CRKGDL 392



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 3/207 (1%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           ILV A+  + + R   E  +  SD G    V   + L+ GL+  G +   + +  +MI++
Sbjct: 98  ILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRR 157

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
                L +FN +I  +CK G++    ++   +   G+ A+V TY  LI    K G I + 
Sbjct: 158 RIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKM 217

Query: 212 FR---LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ++   +L  +  DG  P    +  +I G  +      A   F+EM  +G  PN   Y  L
Sbjct: 218 YKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSL 277

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTP 295
           I      G+  EA     +M    L P
Sbjct: 278 INGLCNNGKVNEATALRDQMVNSCLKP 304



 Score = 41.6 bits (96), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 16/112 (14%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  S  T + +I+ + K G +  A+ + ++         V  YN L+   C+      A 
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDAN 501

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            L+  M+ KG +P++ TY I+                 +EM +KGF P + G
Sbjct: 502 GLLNEMLEKGLIPNRMTYEIVT----------------EEMMEKGFVPDIEG 537


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 144/310 (46%), Gaps = 8/310 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S   +S +++   K G + +A ++ NK   F     + +YN+L+ ++C+      A +L 
Sbjct: 319 SEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLF 378

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY+IL++++C  GK+  A  FL +M++ G    V     L+ G    
Sbjct: 379 NNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKL 438

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L +AK + ++MI  G   ++  + SLI   CK GE+     +Y+ +   G+  +  T+
Sbjct: 439 GKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  +  A  + EA +L   +VE    P    Y  +I+G  + G    AF    EM  
Sbjct: 499 TALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVE 558

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT--EMGLTPISRC------FDLVTDGL 307
           KG  P+   Y  LI+     GR  EA  ++ ++   +  L  I  C      +  + +GL
Sbjct: 559 KGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGL 618

Query: 308 KNCGKHDLAE 317
              G  D AE
Sbjct: 619 CKIGLMDKAE 628



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 2/321 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I  M+     +S  T ++ I    K+  V  AVE+ N  +    +  V  Y +L+  L
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGL 295

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V+ F     ++  MI  GFVP +   + LV+     G +  A + + ++   G  P +
Sbjct: 296 CKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+  +   G L+ A+ + N M  +G   +  T++ LI++ CK G+++  +     
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G+ A V  Y  LI    K G +  A  L   ++ +G KP   +Y  +I G  + G+
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +AF  + EM  KG  PN   +T LI+      R  EA     EM E  + P    +++
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           + +G  +C + +     ELL+
Sbjct: 536 LIEG--HCKEGNTVRAFELLD 554



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 2/287 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A EV  +  +  C   V  YN  +  LC+ +    A  +   +  KG   D  TY  LV 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C   +    +E + EM + GF P       LV GL   G + SA  +VNK+ K G   
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAP 353

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            L  +N+LI ++CK G+++    ++ ++   GL  +  TY ILI +  K G +D A   L
Sbjct: 354 SLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFL 413

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + E G K     Y+ +I G  + G+   A   F EM   G  PN  +YT LI+   + 
Sbjct: 414 GKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKE 473

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G    A     EMT  G++P +  F  +  GL  C  + +AE  +L 
Sbjct: 474 GELHNAFRLYHEMTGKGISPNTYTFTALISGL--CHANRMAEANKLF 518



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 137/307 (44%), Gaps = 9/307 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I        +  A ++F +   +N     + YN L+   C+   
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--------GFN 119
              A+ L+  M+ KG VPD  TY  L++  CS+G++ EA+EF+ ++  +        G  
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCL 605

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V     L+ GL   G ++ A+ +  +M+    + +  T+   ++ +   G +E  +++
Sbjct: 606 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 665

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  V   G  A+  TY ILI    K G I EA  +L N+++ G  P    Y+ II    R
Sbjct: 666 H-DVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           RG   +A   +  M  +G  P+   Y  LI  C   G   +A     +M   G+ P    
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRAT 784

Query: 300 FDLVTDG 306
           ++ +  G
Sbjct: 785 YNSLIHG 791



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 119/264 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           + +L  L  ++ F  A  L   ++  G  PD   Y  +V + C       A+E +  M  
Sbjct: 184 SGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMES 243

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G +  V   ++ ++GL     +  A ++ N +  +G   D+ T+ +L+  +CK  E E 
Sbjct: 244 SGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEA 303

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             EM   + + G     +    L+  + K G I  AF L++ + + G  P   +Y  +I 
Sbjct: 304 GEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALIN 363

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            M + G+ D+A   F+ M  KG  PN   Y++LI    + G+   A ++L +MTE+G+  
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               +  +  G    GK   A+ +
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSL 447



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 110/243 (45%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++R M+  G +P  RT + ++N      + R A     E+   G  P V     +V+ L 
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                  A++++ +M   G  L + T+N  I  +CK+  V   VE+   +   GL ADV 
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  L+  + K    +    +++ ++E G  P  +  + ++ G+ ++G    AF   +++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKV 346

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           K  G  P+  VY  LI    + G+  EA +    M   GL P    + ++ D     GK 
Sbjct: 347 KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKL 406

Query: 314 DLA 316
           D+A
Sbjct: 407 DVA 409



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C++     A  ++  MI  G  PD  +Y+ ++  +C  G ++EA +  + M 
Sbjct: 680 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 739

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G NP     + L+ G    G L  A ++ + M+++G   +  T+NSLI   C    V 
Sbjct: 740 NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVS 799

Query: 175 FCVEMYYSVCKLGLC 189
              + Y+S CKL  C
Sbjct: 800 STAD-YFS-CKLNWC 812



 Score = 38.5 bits (88), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   + S II E+ + G +  A++++            + YN L++  C       A+
Sbjct: 708 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 767

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L   M+R+G  P++ TY  L++  C    +    ++  
Sbjct: 768 ELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFS 806


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 138/291 (47%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  VD A E+ ++    + +  V +YN+L+           AY +I  M   G  PD  
Sbjct: 345 KNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIV 404

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY IL+N +C+ G M +A++ +++M   G NP     + L++GL     L+ A   V+  
Sbjct: 405 TYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDH 464

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   D  + N LI+  CK+ +V+  +E++  +   G+ AD  TY  LI  +   G  
Sbjct: 465 MEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYY 524

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   ++     P  +LY  ++  + + G F  A   FS M  K   P+   +  L
Sbjct: 525 NLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTL 584

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I   G+  R +EA N   +M   G+ P +  F  +  GL + GK  LA ++
Sbjct: 585 IYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEV 635



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 135/308 (43%), Gaps = 2/308 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   +++      +++  + + G  D+ +E F++     C++  + YN  +  L +   
Sbjct: 149 VKSQGVALHRSLYRILLSGYVRAGKFDSVIETFDEMVMSGCREFGVDYNRYIGVLVKNCC 208

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F          + KGF     TY+  ++A C S ++   QE L +M   G +P +   ++
Sbjct: 209 FDLVEKYYDMALAKGFCLTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNI 268

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +  L     L  A QMV KM  +G   D+ T+ +++  +C + +    + ++  + K  
Sbjct: 269 YIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRD 328

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  DV +   LI  + K   +DEAF L   ++    +    +Y  +I G +R G  D A+
Sbjct: 329 LKPDVFSCGALIFGLCKNNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAY 388

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              S M+  G  P+   Y +L+      G   +A   + +M   G+ P    ++ +  GL
Sbjct: 389 KIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGL 448

Query: 308 KNCGKHDL 315
             C  H L
Sbjct: 449 --CKTHQL 454



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 2/306 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           ++P T S  I    +   ++   E+        C   +   N  ++ LC+      A  +
Sbjct: 226 LTPFTYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQM 285

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           + +M  KG  PD  TY  +V+  C + K  EA    +EM  +   P V     L+ GL  
Sbjct: 286 VEKMRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCK 345

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              ++ A ++ ++M+     L +  +N+LI    ++G ++   ++   +   G   D+ T
Sbjct: 346 NNKVDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVT 405

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE-M 253
           Y IL+      GM+++A +L+  +   G  P    Y  ++KG+ +  Q D AF F S+ M
Sbjct: 406 YNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHM 465

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           ++ G         ++   C +  +   A     EM   G+   +  +  + +GL + G +
Sbjct: 466 EVGGFCDTVSCNILIDAFC-KTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYY 524

Query: 314 DLAEKI 319
           +LAE++
Sbjct: 525 NLAEEL 530



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 122/299 (40%), Gaps = 35/299 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   ++ +S    + +I  F + G +D A ++ +      C+  ++ YN LL   C + +
Sbjct: 359 MLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGM 418

Query: 68  FHGAYALIRRMIRKGFVPDKRTY-----------------------------------AI 92
              A  LIR+M   G  PD+ +Y                                    I
Sbjct: 419 MEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNI 478

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++A+C + K++ A E  +EM  KG          L+ GL + GY   A+++  +M+   
Sbjct: 479 LIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQ 538

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++  +N ++  +CK G  +    ++  + +  +  D  T+  LI  + K     EA 
Sbjct: 539 IDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIYWLGKRSRAIEAL 598

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            L  ++   G +P    +  +I G+   G+   A+  +  M   G   +R V   LI++
Sbjct: 599 NLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMMENGIILDREVSERLISV 657



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 60/137 (43%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A E+F +         V LYN +L  LC+V  F  A  +   MI+K   PD  T+
Sbjct: 522 GYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTF 581

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+       +  EA    ++M  +G  P       L+ GLL+ G    A ++   M++
Sbjct: 582 NTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEYMME 641

Query: 151 QGFVLDLETFNSLIETI 167
            G +LD E    LI  +
Sbjct: 642 NGIILDREVSERLISVL 658


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK  E M    +S    T S +IE + K    D A +V  +     C    + YN L+ 
Sbjct: 228 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 287

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A+   + M   G VPD  TY  L+N  C S +  EA+  L EMS     P
Sbjct: 288 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 347

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     L+ G +  G  + A +M+ +M+  G   +  T+++L+  +CK G+++    + 
Sbjct: 348 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 407

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +     D  TY ++I    +     +AFRLL  +   G  P    Y+ +I G+ + 
Sbjct: 408 KQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 467

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ + A     EM  KG  PN  VY  LI+   R G    A     +MT++ + P   C+
Sbjct: 468 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527

Query: 301 DLVTDGLKNCGKHDLAEK 318
           + +  GL   G+ + + K
Sbjct: 528 NSLIFGLSKVGRVEESTK 545



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 7/320 (2%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T + +KP     +P     +I  + + G V  A E+F+K T  N    +  YNSL+F L 
Sbjct: 481 TTKGLKPNAFVYAP-----LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 535

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +V     +     +M  +G +P++ TY+ L++ +  +G +  A++ +Q M D G  P   
Sbjct: 536 KVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 595

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L++    +  +E        M+ QG +LD   +  LI  +  SG +E    +   +
Sbjct: 596 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 655

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K G   DV  Y  LI  + K    ++AF +L  + + G  P    Y  +I G+ + G  
Sbjct: 656 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 715

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A   F+ +  KG  PN   YT LI    + G    A     EM   G+TP +  + ++
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 775

Query: 304 TDGLKNCGKHDLAEKIELLE 323
           T G  + G  DL + + L+E
Sbjct: 776 TTGCSSAG--DLEQAMFLIE 793



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F + G  D A ++  +  A   Q   + Y++L+  LC++     A  L+++M+R  
Sbjct: 355 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 414

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY +++         ++A   L EM + G +P V    +++ GL  +G  E A 
Sbjct: 415 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 474

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ +M  +G   +   +  LI   C+ G V    E++  + K+ +  D+  Y  LI  +
Sbjct: 475 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 534

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SK G ++E+ +    + E G  P    Y+ +I G  + G  + A      M   G  PN 
Sbjct: 535 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 594

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +Y  L+    +     + ++    M + G+   +R + ++   L + G  + A ++
Sbjct: 595 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 651



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 35/323 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +LIIE   +H    +A  + ++         V  Y+ ++  LC+      A  L+  M
Sbjct: 421 TYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 480

Query: 79  IRKGFVPDKRTYAILVNAWCSS-----------------------------------GKM 103
             KG  P+   YA L++ +C                                     G++
Sbjct: 481 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV 540

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            E+ ++  +M ++G  P       L+ G L  G LESA+Q+V +M+  G   +   +  L
Sbjct: 541 EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL 600

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +E+  KS ++E     + S+   G+  D   Y ILI  +S +G ++ AFR+L  + ++G 
Sbjct: 601 LESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS 660

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y+ +I G+ +    + AF    EM  KG  PN   Y  LI    + G    A N
Sbjct: 661 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 720

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
               +   GL P    +  + DG
Sbjct: 721 VFNSILAKGLVPNCVTYTSLIDG 743



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 1/259 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y  L+  L        A+ ++  + + G VPD   Y+ L++  C +    +A   L EM
Sbjct: 631 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 690

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S KG +P +   + L+ GL  +G +  A+ + N ++ +G V +  T+ SLI+  CK G++
Sbjct: 691 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 750

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                +Y  +   G+  D   Y +L    S AG +++A  L+  +   GH    S +  +
Sbjct: 751 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS-FNNL 809

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G  +RG+  +       +  +G  PN      +I+     G+  E     VE+ +   
Sbjct: 810 VDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTS 869

Query: 294 TPISRCFDLVTDGLKNCGK 312
              +R F  +   + N GK
Sbjct: 870 ESAARHFSSLFMDMINQGK 888



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 128/280 (45%), Gaps = 17/280 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVP--------------DKRTYAIL---VNAW 97
           +  L  +LC   LF+ A  L+ +MIR    P                R+ A+L   V+ +
Sbjct: 125 FAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTY 184

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
             SG++++A E +  M D+G  P +R  + L++ LL A  +    ++   M+  G   D+
Sbjct: 185 KKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDV 244

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+++LIE  CK  E +   ++   + + G   +  TY +LI  + ++G ++EAF    +
Sbjct: 245 YTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKD 304

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           + + G  P    Y  +I G+ +  + ++A     EM      PN  VY  LI    R G 
Sbjct: 305 MEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGN 364

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             EA   + EM   G+ P    +D +  GL   G+ D A 
Sbjct: 365 ADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRAS 404



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 120/273 (43%), Gaps = 20/273 (7%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+L+  LC+      A  +   ++ KG VP+  TY  L++  C  G +  A     
Sbjct: 699 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 758

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P      +L  G  +AG LE A  ++ +M  +G    + +FN+L++  CK G
Sbjct: 759 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCKRG 817

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA----FRLLHNLVEDGHKPFP 227
           +++  +++ + +   GL  +  T + +I  +S+AG + E       L     E   + F 
Sbjct: 818 KMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFS 877

Query: 228 SLYAPIIK----------GMFR----RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           SL+  +I            M R     G  D A      +  K  P     Y  ++    
Sbjct: 878 SLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLC 937

Query: 274 RGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTD 305
           R G+  EA N L EM + G+ P  ++C  L+T+
Sbjct: 938 RKGKLSEALNLLKEMDKRGICPSENQCLILLTN 970



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 33/183 (18%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N+L+   C+         L+  ++ +G VP+  T   +++    +GK+ E      E+ 
Sbjct: 806 FNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ 865

Query: 115 DKGFNPPVRGRDLLVQGLLNAGY--LESAKQMVNKMIKQGFV----------------LD 156
            K      R    L   ++N G   L+    M+    K+G +                + 
Sbjct: 866 QKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMG 925

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
             ++ ++++ +C+ G++   + +   + K G+C   +   IL+  +  +G I E   +L 
Sbjct: 926 CSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQEHNTVLD 985

Query: 217 NLV 219
           N++
Sbjct: 986 NML 988


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 144/302 (47%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K   +D A ++ +       +   + Y S++   C++ + + A  +I +M
Sbjct: 470 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 529

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P    +  L++ + S G+  EA + L EM+ +G  P V     L+  L + G +
Sbjct: 530 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 589

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + + MI++G   D  T+ ++I+   K G VE   E+   + K G+  D   Y  L
Sbjct: 590 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 649

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K   +D+AF +   +V  G KP    +  ++ G+F+ G+ D AF  F EM  K  
Sbjct: 650 MDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDE 709

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP    YT+LI   G+ GR  EA +   EM + G+ P    +  +   L   G+   A+
Sbjct: 710 VPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAK 769

Query: 318 KI 319
           K+
Sbjct: 770 KL 771



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 137/314 (43%), Gaps = 29/314 (9%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  + K G +D   ++  +  A  C      Y  L+  LC++     AY L  RM + G
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            + D  T+  L+ A  + GK+ EA E  +EM ++G+ P +  +D L+  L  AG ++ A 
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEAN 249

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   ++ +        +NSL++  CK G V+  +++   + +     D+ TY IL+   
Sbjct: 250 EIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGF 309

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE---------- 252
           S+A  +D+A  L   L   G KP  + Y  II+G++   + ++A  FF E          
Sbjct: 310 SRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTV 369

Query: 253 -------------------MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
                              +K  G  PN   YT +I    + GR  +      +M+    
Sbjct: 370 IKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSC 429

Query: 294 TPISRCFDLVTDGL 307
            P    + +V DGL
Sbjct: 430 VPTRTTYTVVIDGL 443



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 143/316 (45%), Gaps = 3/316 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +++M       +  T   I+  F K  +++ A EV  +     C+  + ++ SLL   
Sbjct: 489 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYY 548

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   AY ++  M  +G  PD   Y  L++   S+G++ EA+     M +KG  P  
Sbjct: 549 LSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDA 608

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++Q     G +E+A +++  M K G   D   +NSL++   K   V+    +Y  
Sbjct: 609 LTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDR 668

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRR 240
           +   G+  +  T+ +L+  + K G  D AF L   ++E    P P+L  Y  +I G+ + 
Sbjct: 669 MVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP-PTLVSYTILIDGLGKA 727

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  +AF  F EM  +G  P    YT LI    + GR  EA   + +M ++G+ P  + +
Sbjct: 728 GRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAY 787

Query: 301 DLVTDGLKNCGKHDLA 316
             +  GL +    D A
Sbjct: 788 SALITGLIDSSMVDTA 803



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 136/284 (47%), Gaps = 1/284 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+E+F +  +  C+  ++ YN+++  L  +     AY     MI  G  PD   +  
Sbjct: 36  IDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTT 95

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++ +C +G+ +     L + + K F P V     ++ G   AG L++  +++ +M+  G
Sbjct: 96  LIHGFCKAGQPQVGHMLLNQ-ALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAG 154

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            + D   +  LI+ +CK G V+   E++  + K G   D  T+  LI A+S  G +DEA 
Sbjct: 155 CIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEAC 214

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   ++E G++P+  +   +I  + + G+ D+A   +  +  K    +R  Y  L+   
Sbjct: 215 ELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGY 274

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            + GR  +    L++M E    P  + ++++  G     + D A
Sbjct: 275 CKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDA 318



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 6/295 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT ++++  F +   +D+A+E+F   +++ C+     Y +++  L + +    A A    
Sbjct: 300 QTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE 359

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +      D  +Y  ++     S ++ EA E  +++   G +P V     ++ GLL AG 
Sbjct: 360 AL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGR 413

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E   +    M     V    T+  +I+ +CK+  +    +++  + + G   D  TY  
Sbjct: 414 IEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTT 473

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI   SKA  +DEA +LL  ++  G +P    Y  I+ G  +    ++A    ++M+ +G
Sbjct: 474 LIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 533

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             P   ++T L++     GR  EA   L EMT  G  P    +  + D L + G+
Sbjct: 534 CEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGR 588



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 134/308 (43%), Gaps = 8/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +IE    HG +D A E++ +      +  + + +SL+FALC+      A  + + +
Sbjct: 196 TFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTV 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K     +  Y  L++ +C  G++ +  + L +M +    P ++  ++LV G   A  L
Sbjct: 256 VAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRL 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   +   G   +  T+ ++I+ +  +  +E     +          DV +Y  +
Sbjct: 316 DDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEAL------DVISYTTV 369

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++ +  IDEA  L   L   G  P    Y  +I G+ + G+ +D    F +M     
Sbjct: 370 IKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSC 429

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P R  YT++I    +     +A     +M + G  P +  +  + DG     K D A K
Sbjct: 430 VPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK 489

Query: 319 IELLEVSL 326
             LL+V L
Sbjct: 490 --LLDVML 495



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 36/274 (13%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A +V  + TA  C   V+LY SL+  L        A  +   MI KG  PD  TY
Sbjct: 552 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 611

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             ++  +   G +  A E L+ M+  G  P     + L+ G +    ++ A  + ++M+ 
Sbjct: 612 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 671

Query: 151 QGFVLDLETFNSL------------------------------------IETICKSGEVE 174
            G   +  TFN L                                    I+ + K+G V 
Sbjct: 672 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVS 731

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
                +  +   G+  +  TY  LI +++KAG I EA +L+ ++V+ G  P    Y+ +I
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            G+      D A+  F EM  +G  PN   Y +L
Sbjct: 792 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 1/225 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   II+ F K G V+ A E+               YNSL+    +++    A+ +  RM
Sbjct: 610 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 669

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQGLLNAGY 137
           +  G  P+  T+ +L++     GK   A    +EM +K   PP +    +L+ GL  AG 
Sbjct: 670 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGR 729

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A     +MI +G + +  T+ SLI ++ K+G +    ++   + KLG+  DV  Y  
Sbjct: 730 VSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 789

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           LI  +  + M+D A+ +   +++ G  P    Y  + +G    G+
Sbjct: 790 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 1/245 (0%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           ++ M   G +PD     I++N  C + K+ +A E   EM   G  P +   + ++ GL +
Sbjct: 8   LKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLAS 67

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              ++ A +  N MI  G   D+  F +LI   CK+G+ +    +     K     DV  
Sbjct: 68  IDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFL 126

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  +I    KAG +D  F++L  ++  G  P  + Y  +I  + + G+ D+A+  F  M+
Sbjct: 127 YTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G   +   +  LI      G+  EA     EM E G  P     D +   L   GK D
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVD 246

Query: 315 LAEKI 319
            A +I
Sbjct: 247 EANEI 251



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%), Gaps = 2/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I+       +D A E+F K     C   V+ Y +++  L +             M
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDM 424

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                VP + TY ++++  C +  + +A +  ++M  KG  P       L+ G   A  +
Sbjct: 425 SGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 484

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+++++ M+ +G      T+ S++   CK   +    E+   + + G    +  +  L
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSL 544

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G  +EA+++L  +   G  P   LY  +I  +F  G+  +A   F  M  KG 
Sbjct: 545 LSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGC 604

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y  +I    + G  VEAA  ++E M + G+ P    ++ + DG     + D A
Sbjct: 605 APDALTYGTIIQNFSKIGN-VEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQA 662



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 1/203 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +ELM    +       + +++ + K   VD A  V+++  A   +   + +N L+  L +
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 690

Query: 65  VKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A++L + M+ K  VP    +Y IL++    +G++ EA    QEM D+G  P   
Sbjct: 691 DGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECH 750

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+  L  AG +  AK++V  M+K G   D++ +++LI  +  S  V+   +++  +
Sbjct: 751 TYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 810

Query: 184 CKLGLCADVSTYKILIPAVSKAG 206
            K G   +  TYK+L      AG
Sbjct: 811 MKRGCAPNEVTYKVLRRGFRAAG 833


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 139/311 (44%), Gaps = 6/311 (1%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P T+     I   GK G  + AVE+  + TA         +NS + A  +   +  A 
Sbjct: 351 VAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEAL 410

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L++ M  K   PD  +Y   + A    G+   A E  ++M  KG  P V   ++ ++  
Sbjct: 411 ELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRAC 470

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G  +   +++ +M  QG   ++ T+NS I+T  K G+ E  +++   + +L +  D 
Sbjct: 471 GERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDS 530

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY   I A SK G   EA  LL  +   G  P    Y   I    + GQ++ A     +
Sbjct: 531 ITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQ 590

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  PN   Y  +I  CGRGG + +A + L E+ E  + P    ++L    +  CGK
Sbjct: 591 MPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLA---ISACGK 647

Query: 313 HD-LAEKIELL 322
                E ++LL
Sbjct: 648 RGRWEEALDLL 658



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 133/295 (45%), Gaps = 3/295 (1%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I+  G+ G  +  + +  +  +       + YNS++    +   +  A +++  M  KG 
Sbjct: 222 IKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGL 281

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            P+  +Y + + A   SG+ +EA E L++M  +G  P V   D  ++     G  E++  
Sbjct: 282 TPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVD 341

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           ++++M  +G   +   FNS I    K G+ E  VE+   V  LGL  D +++   I A +
Sbjct: 342 LLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACT 401

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K+G   EA  LL  +     KP    Y   I+   + GQ++ A     +M  KG  PN  
Sbjct: 402 KSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVI 461

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
              + I  CG  GR+ E    L +M   GLTP    ++     +K CGK    EK
Sbjct: 462 SSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYN---SAIKTCGKGGQWEK 513



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 10/321 (3%)

Query: 3   KTIELMKPYN-LSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K +EL++    L ++P   S    I    K G    A+E+  +  A   +   + YNS +
Sbjct: 373 KAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAI 432

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            A  +   +  A  L R+M  KG  P+  +  I + A    G+ +E  E L++M  +G  
Sbjct: 433 EACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLT 492

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V   +  ++     G  E A  ++ KM +     D  T+NS I    K G  +  V +
Sbjct: 493 PNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVAL 552

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   GL  DV +Y   I A  K G  + A  LL  +   G  P    Y  +IK   R
Sbjct: 553 LREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGR 612

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+++ A     E+K     P+   Y + I+ CG+ GR+ EA + L EM   GLTP    
Sbjct: 613 GGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTP---- 668

Query: 300 FDLV--TDGLKNCGKHDLAEK 318
            D++  T  ++ C      EK
Sbjct: 669 -DVISYTSAIRACNAEGEWEK 688



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 133/300 (44%), Gaps = 2/300 (0%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +S  + I   G+ G     +E+  +  A      V+ YNS +    +   +  A 
Sbjct: 456 LTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKAL 515

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ +M      PD  TY   + A    G+ +EA   L+EM  +G  P V      +   
Sbjct: 516 DLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAY 575

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G  E A +++ +M  +G   ++ T+NS+I+   + GE E  +++   + +  +  D+
Sbjct: 576 GKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDL 635

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            +Y + I A  K G  +EA  LL  +  +G  P    Y   I+     G+++ A    + 
Sbjct: 636 MSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNL 695

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M   G  P    Y++ I  CG+GGR  EA   + EM + GL+  +    L+ + L +  K
Sbjct: 696 MGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEALGDDAK 755



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/319 (24%), Positives = 135/319 (42%), Gaps = 4/319 (1%)

Query: 2   WK-TIELMKPYNLS-VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  +EL+K      + P  +S    IE  GK G  + A+E+  +         V+  N 
Sbjct: 406 WKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNI 465

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            + A  E   +     L+R+M  +G  P+  TY   +      G+  +A + L +M +  
Sbjct: 466 AIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELA 525

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     +  +      G  + A  ++ +M  QG   D+ ++ + I+   K+G+ E  V
Sbjct: 526 MTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAV 585

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+   +   GL  +V TY  +I A  + G  ++A  LL  L E    P    Y   I   
Sbjct: 586 ELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISAC 645

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +RG++++A     EM  +G  P+   YT  I  C   G + +A   L  M   G++P +
Sbjct: 646 GKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTA 705

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             + L  +     G+ + A
Sbjct: 706 TSYSLAIEACGKGGRREEA 724



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 5/275 (1%)

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMI-RKGFVPDKRTYAILVNAWCSSGKMRE-AQE 108
           C   Y + +        +  A  L+R +  ++G  P+   Y   + A C SG   E A  
Sbjct: 143 CAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEA-CGSGDQWEIAVS 201

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L+EM+D+   P     +  ++     G  E    ++ +M   G   D  T+NS+I    
Sbjct: 202 LLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCG 261

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G+ +  + +   +   GL  +  +Y + I A  ++G   EA  +L  +   G  P   
Sbjct: 262 KEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVI 321

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y   IK     GQ++ +     EM  +G  PN   +   I  CG+GG++ +A   L E+
Sbjct: 322 SYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREV 381

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T +GLTP +  F+         G+    E +ELL+
Sbjct: 382 TALGLTPDATSFNSAIAACTKSGRWK--EALELLK 414



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 121/303 (39%), Gaps = 1/303 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           V   + +  I   G+ G  + A+E+  +          V  YNS + A      +  A +
Sbjct: 142 VCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVS 201

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+R M  +  VPD+ +Y   + A    G+       L+EM   G  P     + ++ G  
Sbjct: 202 LLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCG 261

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A  ++ +M  +G   +  ++N  I    +SG  +  VE+   +   G+  DV 
Sbjct: 262 KEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVI 321

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +Y   I A    G  + +  LL  +   G  P    +   I    + GQ++ A     E+
Sbjct: 322 SYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREV 381

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G  P+   +   I  C + GR+ EA   L EM    L P +  ++   +     G+ 
Sbjct: 382 TALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQW 441

Query: 314 DLA 316
           ++A
Sbjct: 442 EMA 444



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 7/234 (2%)

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDL 157
           ++GK REA   L EM + G           +      G  E A +++ ++ +Q G   ++
Sbjct: 122 TTGKWREALGILDEMKEGGV-VCAHSYTTAITTCGRQGQWEKALELLREIPEQEGVSPNV 180

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             +NS IE      + E  V +   +    +  D  +Y   I A  + G  +    LL  
Sbjct: 181 FCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLRE 240

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G  P    Y  +I G  + GQ+ +A    +EM  KG  P    Y M I  CGR GR
Sbjct: 241 MPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGR 300

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE-KIELL-EVSLRSV 329
           + EA   L +M   G+TP    +D     +K CG     E  ++LL E++ R V
Sbjct: 301 WKEAVEVLRQMESQGVTPDVISYDAA---IKACGGGGQWETSVDLLDEMAGRGV 351


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/317 (27%), Positives = 149/317 (47%), Gaps = 4/317 (1%)

Query: 3   KTIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + + L++  +  ++P   T + ++    K   V  A +   +     C      YN+++ 
Sbjct: 168 EAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIID 227

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+  +   A  L++  I KGFVPD+ TY  L+N  C+ G +  A E   E   K   P
Sbjct: 228 GYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKP 287

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCVEM 179
            +   + LV+GL   G +  A Q++N+M++ G   D+ T+N +I  +CK G + +  V M
Sbjct: 288 DLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVM 347

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
             ++ K G   DV T+  +I    K   +D A +L+  +   G  P    Y  ++ G+ +
Sbjct: 348 NDAIVK-GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  +    F EM +KG  PN   Y +LI    +  +  EA+  +V M++ GL P +  
Sbjct: 407 AGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTIS 466

Query: 300 FDLVTDGLKNCGKHDLA 316
           F+ +  G    G  D A
Sbjct: 467 FNTLIHGFCRNGDLDGA 483



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G V+ A+E+FN+  A + +  +++YNSL+  LC   L   A  ++  M+  G
Sbjct: 260 LINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDG 319

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY I++N  C  G + +A   + +   KG+ P V   + ++ G      L+SA 
Sbjct: 320 CHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSAL 379

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+V +M   G   D  T+NS++  +CK+G+ +   E +  +   G   +  TY ILI   
Sbjct: 380 QLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 439

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   ++EA  ++  + +DG  P    +  +I G  R G  D A+  F ++  KG+    
Sbjct: 440 CKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 499

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + +LI           A     EM   G  P    + ++ DG
Sbjct: 500 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDG 543



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G + +A  V N          V  +N+++   C+      A  L+ RM
Sbjct: 326 TYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERM 385

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  ++N  C +GK +E  E  +EM  KG  P     ++L++       L
Sbjct: 386 WMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQL 445

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M + G V D  +FN+LI   C++G+++    ++  + + G  A   T+ IL
Sbjct: 446 EEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 505

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A S    +  A ++   ++  G+KP    Y  ++ G  +    D A+   +EM  KG 
Sbjct: 506 IGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGF 565

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   +  ++       R  EA   +  M  MG+ P
Sbjct: 566 VPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 2/305 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++   + GL+ +A++V N+     C   +  YN ++  LC++     A  ++   I KG
Sbjct: 295 LVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKG 354

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           ++PD  T+  +++ +C   K+  A + ++ M   G  P     + ++ GL  AG  +   
Sbjct: 355 YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVN 414

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +   +MI +G   +  T+N LIE  CK  ++E    +   + + GL  D  ++  LI   
Sbjct: 415 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGF 474

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G +D A+ L   L E G+      +  +I     +     A   F EM  KG+ P+ 
Sbjct: 475 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 534

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y +L+    +      A  +L EM   G  P    F  V + L     H ++E + ++
Sbjct: 535 YTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAM--NHRVSEAVAII 592

Query: 323 EVSLR 327
            + +R
Sbjct: 593 HIMVR 597



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 150/335 (44%), Gaps = 38/335 (11%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
            V P     ++     HG   +A  +F++    +    V  +N++L ALC+      + A
Sbjct: 77  DVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGA 136

Query: 74  LIRRMIRKG----------------------------------FVPDKRTYAILVNAWCS 99
           L+ +++++G                                    PD  TY  L+   C 
Sbjct: 137 LLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCK 196

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
             K++EA ++L+ M ++G  P     + ++ G      L+ A +++   I +GFV D  T
Sbjct: 197 DSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVT 256

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           + SLI  +C  G+VE  +E++       L  D+  Y  L+  + + G+I  A ++++ +V
Sbjct: 257 YCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMV 316

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF- 278
           EDG  P    Y  +I G+ + G   DA    ++  +KG+ P+  V+T    + G   R  
Sbjct: 317 EDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD--VFTFNTMIDGYCKRLK 374

Query: 279 VEAANYLVEMTEM-GLTPISRCFDLVTDGLKNCGK 312
           +++A  LVE   M G+ P +  ++ V +GL   GK
Sbjct: 375 LDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGK 409



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 3/300 (1%)

Query: 15  VSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P  +T ++ I+ F   G    A+ +        C    L Y +++  L      + A 
Sbjct: 41  VAPDARTHTVRIKSFCITGRPHVALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDAR 100

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M+R+   PD  T+  +++A C  G + E+   L ++  +G +      ++ ++GL
Sbjct: 101 HLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGL 160

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G LE A  +V  M       D+ T+N+L+  +CK  +V+   +    +   G   D 
Sbjct: 161 CEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDD 219

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  +I    K  M+ EA  LL + +  G  P    Y  +I G+   G  + A   F+E
Sbjct: 220 FTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE 279

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            + K   P+  VY  L+    R G  + A   + EM E G  P    +++V +GL   G 
Sbjct: 280 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN 339



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
           F C      YN+++ AL        A+ +  RM+  G  PD RT+ + + ++C +G+   
Sbjct: 4   FGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHV 63

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A   L+ + ++G +        +V+GL   G+   A+ + ++M+++    D+ TFN+++ 
Sbjct: 64  ALRLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLH 123

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-K 224
            +C+ G++     +   V K G+  +  T  I I  + + G ++EA  L+ ++  D +  
Sbjct: 124 ALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESM--DAYIA 181

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +++G+ +  +  +A  +   M  +G  P+   Y  +I    +     EA   
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           L +    G  P    +  + +GL  C + D+   +EL
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGL--CAEGDVERALEL 276



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 105/223 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  Y ++    T + ++    K G      E F +     C+   + YN L+   
Sbjct: 380 QLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 439

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C++     A  +I RM + G VPD  ++  L++ +C +G +  A    Q++ +KG++   
Sbjct: 440 CKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 499

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+    +   ++ A+++  +MI +G+  DL T+  L++  CK+  V+        
Sbjct: 500 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAE 559

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +   G    ++T+  ++ +++    + EA  ++H +V  G  P
Sbjct: 560 MVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVP 602



 Score = 40.0 bits (92), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T +++I  +     +  A ++F +  +   +  +  Y  L+   C+      AY 
Sbjct: 496 SATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYV 555

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  M+ KGFVP   T+  ++N+   + ++ EA   +  M   G  P V      V  +L
Sbjct: 556 HLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEV------VDTIL 609

Query: 134 NAGYLESA--KQMVNKMIKQGFV 154
           +    E A  K +V +++K+G +
Sbjct: 610 STDKKEIAAPKILVEELMKKGHI 632


>gi|449485620|ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 140/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M      V+ +T  ++I   G+ GL    VE F K   FN +     YN++L 
Sbjct: 170 MWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRVVERFIKSKTFNFRPYKHSYNAILH 229

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  VK +     +  +M+     PD  TY +L+ + C  GK+ +    L EM+ KGF+P
Sbjct: 230 GLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFSSCKLGKLDQFHRLLDEMARKGFSP 289

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + GF  ++  F +LI  + ++G ++ C   +
Sbjct: 290 DFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPNVLHFTTLINGLSRAGNLDACKYFF 349

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   DV  Y ++I + ++AG  ++A      ++  G  P    Y  +I+G    
Sbjct: 350 DELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFDEMIMKGQLPNVFTYNSMIRGFCMV 409

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A+   SEM+ +G  PN  VY+ L++     G+  EA   +  M E G
Sbjct: 410 GKFKEAYSMLSEMESRGCRPNFLVYSTLVSYLRNAGKLGEAHKVIKRMVENG 461



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 113/266 (42%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N +  V  Y+ ++    E + F   + ++  M  KG+    RT+ IL+     +G  +  
Sbjct: 146 NYRHTVNSYHIIMKIFAECEEFKAMWRVLDEMTEKGYPVTARTFMILICTCGEAGLAKRV 205

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E   +     F P     + ++ GL+     +    + ++M+      D+ T+N L+ +
Sbjct: 206 VERFIKSKTFNFRPYKHSYNAILHGLVIVKQYKLIGWVYDQMLLDDHSPDILTYNVLLFS 265

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK G+++    +   + + G   D  TY IL+  + K      A  LL+++ E G  P 
Sbjct: 266 SCKLGKLDQFHRLLDEMARKGFSPDFHTYNILLYVLGKGDKPLAALNLLNHMREVGFGPN 325

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              +  +I G+ R G  D    FF E+   G  P+   YT++IT     G+  +A  +  
Sbjct: 326 VLHFTTLINGLSRAGNLDACKYFFDELGNNGCIPDVVCYTVMITSFTEAGQHEKARAFFD 385

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G  P    ++ +  G    GK
Sbjct: 386 EMIMKGQLPNVFTYNSMIRGFCMVGK 411


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 145/306 (47%), Gaps = 7/306 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F K G   +   +     A   Q  V+ YN LL  LC+++ +H A  L+R M
Sbjct: 12  TFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDM 71

Query: 79  IRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           I +G    PD  TY+ L++ +C +GK+ E++E L+E+  +G  P       ++  L  + 
Sbjct: 72  ISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSA 131

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            L  A +++ +MI+ G    L TFN+LI   C+   +E    +  ++   G+ ADV TY 
Sbjct: 132 RLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYN 191

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+  + KAG + EA +LL  +   G  P    Y+  + G+ + G+  +A     +M+  
Sbjct: 192 TLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDS 251

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM---GLTPISRCFDLVTDGLKNCGKH 313
            H PN   Y  ++    + G+   A   + +M      GL  +   +  V DGL   G+ 
Sbjct: 252 DHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVG--YSTVVDGLCKLGRT 309

Query: 314 DLAEKI 319
             A  +
Sbjct: 310 QEARSV 315



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 126/267 (47%), Gaps = 6/267 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+  LC+      A  L+ RM   G  PD   Y+  V   C SGK+  A + L+
Sbjct: 187 VVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLE 246

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKS 170
           +M D   +P V   + ++ GL  +G +++A +M+ +M    G  L++  ++++++ +CK 
Sbjct: 247 QMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G  +    +  ++ + G   DV TY  L+  + KAG I+EA   +  +  +G KP    Y
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVYTMLITMCGRGGRFVEAANYL 285
             ++ G+   G+  +A     EM   G      PP+   Y  LI    + GR  +A  + 
Sbjct: 367 CSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFF 426

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGK 312
             M   G  P    +  + +GL   G+
Sbjct: 427 QRMRSQGCDPDGVSYSTIVEGLARSGR 453



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 135/283 (47%), Gaps = 6/283 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M    +     T + +++   K G +  A ++  +  A  C   V+ Y+S ++ LC+
Sbjct: 175 LQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCK 234

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVR 123
                 A+ ++ +M      P+  TY  +++  C SGK+  A E +++M S  G    V 
Sbjct: 235 SGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVV 294

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           G   +V GL   G  + A+ ++  M + G   D+ T++SL+  +CK+G++E  VE    +
Sbjct: 295 GYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREM 354

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL-----VEDGHKPFPSLYAPIIKGMF 238
              G   +  TY  L+  +   G + EA R++  +       D   P  S Y  +I G+ 
Sbjct: 355 AMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLC 414

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           + G+ DDA  FF  M+ +G  P+   Y+ ++    R GR ++A
Sbjct: 415 KAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 132/278 (47%), Gaps = 6/278 (2%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
            C   ++ +N+L+   C  K    A +L++ M   G   D  TY  L++  C +G+++EA
Sbjct: 147 GCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEA 206

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++ L+ M   G  P V      V GL  +G + +A Q++ +M       ++ T+N++++ 
Sbjct: 207 EQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDG 266

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +CKSG+++  +EM   +     C  +V  Y  ++  + K G   EA  ++  +   G +P
Sbjct: 267 LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRP 326

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y+ ++ G+ + G+ ++A     EM ++G  PN   Y  L+      GR  EA   +
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMV 386

Query: 286 VEMTEMGLT-----PISRCFDLVTDGLKNCGKHDLAEK 318
            EM+  G       P    ++ +  GL   G+ D A K
Sbjct: 387 EEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALK 424



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  + K G V+ + E+  +  +   +   L+Y  ++ +LC+      A  L+  M
Sbjct: 84  TYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEM 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR G  P   T+  L++  C    +  A   LQ M+  G    V   + L+ GL  AG L
Sbjct: 144 IRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRL 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+Q++ +M   G   D+  ++S +  +CKSG+V    ++   +       +V TY  +
Sbjct: 204 QEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTI 263

Query: 199 IPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  + K+G ID A  ++  +   DG       Y+ ++ G+ + G+  +A      M   G
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y+ L+    + G+  EA   + EM   G  P +  +  +  GL +CG+   AE
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAE 383

Query: 318 KI 319
           ++
Sbjct: 384 RM 385



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 111/210 (52%), Gaps = 6/210 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFA 61
           + +E M+  +   +  T + I++   K G +D A+E+  +  ++  C   V+ Y++++  
Sbjct: 243 QVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDG 302

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC++     A +++  M R G  PD  TY+ LVN  C +GK+ EA E ++EM+ +G  P 
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPN 362

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-----LETFNSLIETICKSGEVEFC 176
                 LV GL + G L  A++MV +M   G   D     + T+N+LI  +CK+G ++  
Sbjct: 363 AVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDA 422

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           ++ +  +   G   D  +Y  ++  ++++G
Sbjct: 423 LKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 119/283 (42%), Gaps = 39/283 (13%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G  P+  T+  LVN +   G+  + +  L+ M+ +G  P V   + L++GL     
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 138 LESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVE---------------MY 180
              A+++V  MI +G     DL T+++L+   CK+G+VE   E               MY
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 181 Y----SVCK----------------LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                S+CK                 G C  + T+  LI    +   ++ A  LL  +  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G K     Y  ++ G+ + G+  +A      MK  G  P+   Y+  +    + G+ + 
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           A   L +M +    P    ++ + DGL   GK D A  +E++E
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTA--LEMME 281


>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
          Length = 508

 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 140/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ +E M    L VS +T  L++   G+ GL    VE F K + FN +     +N++L 
Sbjct: 202 MWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAILH 261

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  ++ +     + ++MI +G  PD  TY +++ A    GK+ +  + L EM   G  P
Sbjct: 262 TLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMGKNGLAP 321

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   +LL+  L       +A  ++N M   G V  +  F +LI+ + ++G +E C   +
Sbjct: 322 DLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFF 381

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     AG  DEA +   +++  G  P    Y  +I G+   
Sbjct: 382 DEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIV 441

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD A     +M+ +G  PN  VY+ L++     G+  EA N +  MT  G
Sbjct: 442 GEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 493



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 120/303 (39%), Gaps = 39/303 (12%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN +L    E       + L+  M  KG     RT+ +LV     +G  R   E   + 
Sbjct: 185 MYNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKS 244

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+  + P     + ++  LL        + +  KMI +G   D+ T+N ++      G++
Sbjct: 245 SNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLGKL 304

Query: 174 EFCVEMYYSVCKLGLCADVSTYKI-----------------------------------L 198
               ++   + K GL  D+ TY +                                   L
Sbjct: 305 NQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNL 364

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +S+AG ++        +V+ G +P    Y  +I G    G+FD+A  FF +M ++G 
Sbjct: 365 IDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQ 424

Query: 259 PPNRPVYTMLITMCGR--GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN  VYT    +CG    G F +A + L +M   G TP    +  +   L+N GK   A
Sbjct: 425 LPN--VYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEA 482

Query: 317 EKI 319
             I
Sbjct: 483 NNI 485


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 142/318 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK  E M    +S    T S +IE + K    D A +V  +     C    + YN L+ 
Sbjct: 101 LWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIA 160

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A+   + M   G VPD  TY  L+N  C S +  EA+  L EMS     P
Sbjct: 161 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 220

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     L+ G +  G  + A +M+ +M+  G   +  T+++L+  +CK G+++    + 
Sbjct: 221 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLL 280

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +     D  TY ++I    +     +AFRLL  +   G  P    Y+ +I G+ + 
Sbjct: 281 KQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQS 340

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ + A     EM  KG  PN  VY  LI+   R G    A     +MT++ + P   C+
Sbjct: 341 GEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 400

Query: 301 DLVTDGLKNCGKHDLAEK 318
           + +  GL   G+ + + K
Sbjct: 401 NSLIFGLSKVGRVEESTK 418



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 162/356 (45%), Gaps = 43/356 (12%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T + +KP     +P     +I  + + G V  A E+F+K T  N    +  YNSL+F L 
Sbjct: 354 TTKGLKPNAFVYAP-----LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 408

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--- 120
           +V     +     +M  +G +P++ TY+ L++ +  +G +  A++ +Q M D G  P   
Sbjct: 409 KVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 468

Query: 121 --------------------------------PVRGRDLLVQGLLNAGYLESAKQMVNKM 148
                                             R   +L+  L ++G +E+A ++++++
Sbjct: 469 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEI 528

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            K G V D+  ++SLI  +CK+ + E    +   + K G+  ++  Y  LI  + K+G I
Sbjct: 529 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 588

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             A  + ++++  G  P    Y  +I G  + G   +AF  ++EM   G  P+  VY++L
Sbjct: 589 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 648

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            T C   G   +A   + EM   G   IS  F+ + DG   C +  + E ++LL V
Sbjct: 649 TTGCSSAGDLEQAMFLIEEMFLRGHASIS-SFNNLVDGF--CKRGKMQETLKLLHV 701



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F + G  D A ++  +  A   Q   + Y++L+  LC++     A  L+++M+R  
Sbjct: 228 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 287

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY +++         ++A   L EM + G +P V    +++ GL  +G  E A 
Sbjct: 288 HRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 347

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ +M  +G   +   +  LI   C+ G V    E++  + K+ +  D+  Y  LI  +
Sbjct: 348 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 407

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SK G ++E+ +    + E G  P    Y+ +I G  + G  + A      M   G  PN 
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 467

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +Y  L+    +     + ++    M + G+   +R + ++   L + G  + A ++
Sbjct: 468 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 524



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 133/294 (45%), Gaps = 1/294 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  + K+G +++A ++  +      +   ++Y  LL +  +        +  + M
Sbjct: 434 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSM 493

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G + D R Y IL++   SSG M  A   L E+   G  P V     L+ GL      
Sbjct: 494 LDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADR 553

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++++M K+G   ++  +N+LI+ +CKSG++ +   ++ S+   GL  +  TY  L
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G I  AF L + ++  G  P   +Y+ +  G    G  + A     EM ++GH
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                   ++   C R G+  E    L  +   GL P +   + +  GL   GK
Sbjct: 674 ASISSFNNLVDGFCKR-GKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGK 726



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 35/323 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +LIIE   +H    +A  + ++         V  Y+ ++  LC+      A  L+  M
Sbjct: 294 TYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSS-----------------------------------GKM 103
             KG  P+   YA L++ +C                                     G++
Sbjct: 354 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV 413

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            E+ ++  +M ++G  P       L+ G L  G LESA+Q+V +M+  G   +   +  L
Sbjct: 414 EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL 473

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +E+  KS ++E     + S+   G+  D   Y ILI  +S +G ++ AFR+L  + ++G 
Sbjct: 474 LESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGS 533

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y+ +I G+ +    + AF    EM  KG  PN   Y  LI    + G    A N
Sbjct: 534 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 593

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
               +   GL P    +  + DG
Sbjct: 594 VFNSILAKGLVPNCVTYTSLIDG 616



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 1/259 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y  L+  L        A+ ++  + + G VPD   Y+ L++  C +    +A   L EM
Sbjct: 504 IYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 563

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S KG +P +   + L+ GL  +G +  A+ + N ++ +G V +  T+ SLI+  CK G++
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                +Y  +   G+  D   Y +L    S AG +++A  L+  +   GH    S +  +
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS-FNNL 682

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G  +RG+  +       +  +G  PN      +I+     G+  E     VE+ +   
Sbjct: 683 VDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTS 742

Query: 294 TPISRCFDLVTDGLKNCGK 312
              +R F  +   + N GK
Sbjct: 743 ESAARHFSSLFMDMINQGK 761



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 126/274 (45%), Gaps = 17/274 (6%)

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVP--------------DKRTYAIL---VNAWCSSGK 102
            ++C   LF+ A  L+ +MIR    P                R+ A+L   V+ +  SG+
Sbjct: 3   MSMCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGR 62

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           +++A E +  M D+G  P +R  + L++ LL A  +    ++   M+  G   D+ T+++
Sbjct: 63  VQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYST 122

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           LIE  CK  E +   ++   + + G   +  TY +LI  + ++G ++EAF    ++ + G
Sbjct: 123 LIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 182

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y  +I G+ +  + ++A     EM      PN  VY  LI    R G   EA 
Sbjct: 183 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 242

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             + EM   G+ P    +D +  GL   G+ D A
Sbjct: 243 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 276



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 122/291 (41%), Gaps = 35/291 (12%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP  L ++++ + K G V +A EV            +   N+LL  L         + + 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVR 105

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+  G  PD  TY+ L+ A+C   K+RE                              
Sbjct: 106 EFMVGAGISPDVYTYSTLIEAYC---KVRE------------------------------ 132

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
              ++AK+++ +M ++G  L+  T+N LI  +C+SG VE        +   GL  D  TY
Sbjct: 133 --FDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 190

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + K+   +EA  LL  +     KP   +YA +I G  R G  D+AF    EM  
Sbjct: 191 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 250

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            G  PN+  Y  L+    + G+   A+  L +M      P +  ++L+ +G
Sbjct: 251 AGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 301



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 19/277 (6%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A  + ++ +       ++ YN+L+  LC+      A  +   ++ KG VP+  TY  L
Sbjct: 554 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 613

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C  G +  A     EM   G  P      +L  G  +AG LE A  ++ +M  +G 
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA-- 211
              + +FN+L++  CK G+++  +++ + +   GL  +  T + +I  +S+AG + E   
Sbjct: 674 A-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 732

Query: 212 --FRLLHNLVEDGHKPFPSLYAPIIK----------GMFR----RGQFDDAFCFFSEMKI 255
               L     E   + F SL+  +I            M R     G  D A      +  
Sbjct: 733 IFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVA 792

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           K  P     Y  ++    R G+  EA N L EM + G
Sbjct: 793 KSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  125 bits (314), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 36/332 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K   V+ A E+    T+      V  +NSL+  LC       A  L   M
Sbjct: 374 TYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEM 433

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG------- 124
             KG  PD+ TY+IL+ + CS  +++EA   L+EM   G       +N  + G       
Sbjct: 434 KEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRV 493

Query: 125 ---------------------RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                                 + L+ GL  +  +E A Q++++MI +G   D  T+ ++
Sbjct: 494 GDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTM 553

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           ++  C+ G+++   ++  ++   G   D+ TY  LI  + KAG +D A +LL ++   G 
Sbjct: 554 LKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGM 613

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAA 282
              P  Y P+I+ + +R +  +A   F EM  KG PP+   Y ++   +C  GG   EA 
Sbjct: 614 VLTPQAYNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAV 673

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           ++ VEM E G+ P    F  + +GL +    D
Sbjct: 674 DFTVEMLEKGILPEFPSFGFLAEGLCSLSMED 705



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 134/279 (48%), Gaps = 2/279 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +D AVE+ +   + +C+   + YN+L+  LC+      A  L R +
Sbjct: 339 TYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVL 398

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  T+  L+   C +     A E  +EM +KG +P      +L++ L +   L
Sbjct: 399 TSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRL 458

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M   G   ++  +N+LI+ +CK+  V    +++  +  LG+     TY  L
Sbjct: 459 KEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTL 518

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+  ++EA +L+  ++ +G KP    Y  ++K   ++G    A      M + G 
Sbjct: 519 INGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYL--VEMTEMGLTP 295
            P+   Y  LI    + GR   A+  L  V+M  M LTP
Sbjct: 579 EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTP 617



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 146/319 (45%), Gaps = 4/319 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y L    +T + +++ F +   V+ A+ +        C+   +  N L+  LC+
Sbjct: 222 LEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCK 281

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A   I     +GF PD+ T+  LVN  C +G +++  E +  M +KGF   V  
Sbjct: 282 EGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYT 339

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL   G ++ A ++++ M+ +    +  T+N+LI T+CK   VE   E+   + 
Sbjct: 340 YNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLT 399

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+  LI  +      + A  L   + E G  P    Y+ +I+ +    +  
Sbjct: 400 SKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLK 459

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM++ G   N  VY  LI    +  R  +A +   +M  +G++  S  ++ + 
Sbjct: 460 EALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLI 519

Query: 305 DGLKNCGKHDLAEKIELLE 323
           +GL  C    + E  +L++
Sbjct: 520 NGL--CKSKRVEEAAQLMD 536



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 161/368 (43%), Gaps = 51/368 (13%)

Query: 7   LMKPYNLSVSPQT------LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           L+   + +V P T      LSL+++   K  LV+    + +K  A      V  +N L+ 
Sbjct: 152 LLMERDFAVKPDTRFYNVALSLLVKA-NKLKLVET---LHSKMVADAVPPDVSTFNILIR 207

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYA----------------------------- 91
           ALC+      A  ++  M   G  PD++T+                              
Sbjct: 208 ALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCEL 267

Query: 92  ------ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
                 +LVN  C  G++ EA  F+ E  ++GF P     + LV GL   G+++   +M+
Sbjct: 268 TSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMM 325

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           + M+++GF LD+ T+NSLI  +CK GE++  VE+ + +       +  TY  LI  + K 
Sbjct: 326 DFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKE 385

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
             ++ A  L   L   G  P    +  +I+G+      + A   F EMK KG  P+   Y
Sbjct: 386 NHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTY 445

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KN---CGKHDLAEKIEL 321
           ++LI       R  EA   L EM   G       ++ + DGL KN       D+ +++E+
Sbjct: 446 SILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEM 505

Query: 322 LEVSLRSV 329
           L VS  SV
Sbjct: 506 LGVSRSSV 513



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 2/290 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ELM      ++  ++++++    K G ++ A+    +   F   Q    +N+L+  LC  
Sbjct: 258 ELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVT--FNALVNGLCRT 315

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                   ++  M+ KGF  D  TY  L++  C  G++ EA E L  M  +   P     
Sbjct: 316 GHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTY 375

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+  L    ++E+A ++   +  +G + D+ TFNSLI+ +C +   E  +E++  + +
Sbjct: 376 NTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKE 435

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D  TY ILI ++     + EA  LL  +   G      +Y  +I G+ +  +  D
Sbjct: 436 KGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGD 495

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A   F +M++ G   +   Y  LI    +  R  EAA  + +M   GL P
Sbjct: 496 AEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKP 545



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 6/271 (2%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE--FLQ 111
           +++ LL  L     F     L+R+M       D+ T+ I +  + +S  +       FL 
Sbjct: 94  VFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLL 153

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              D    P  R  ++ +  L+ A  L+  + + +KM+      D+ TFN LI  +CK+ 
Sbjct: 154 MERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAH 213

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++   + M   +   GL  D  T+  L+    +   ++ A R+   +VE G +       
Sbjct: 214 QLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVN 273

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ + G+ ++A  F  E   +G  P++  +  L+    R G   +    +  M E 
Sbjct: 274 VLVNGLCKEGRIEEALRFIYEE--EGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEK 331

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G       ++ +  GL   G+ D  E +E+L
Sbjct: 332 GFELDVYTYNSLISGLCKLGEID--EAVEIL 360



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 1/142 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G VD A ++               YN ++ ALC+ K    A  L R M
Sbjct: 584 TYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREM 643

Query: 79  IRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + KG  PD  TY I+    C+ G  ++EA +F  EM +KG  P       L +GL +   
Sbjct: 644 MEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSM 703

Query: 138 LESAKQMVNKMIKQGFVLDLET 159
            ++  Q++N ++++G     ET
Sbjct: 704 EDTLIQLINMVMEKGRFSQSET 725


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 138/291 (47%), Gaps = 3/291 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ELM+ ++  +   T +++I      G VD A E+     +F C   ++ YN LL  LC +
Sbjct: 203 ELMRSHS-CLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRI 261

Query: 66  KLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                A  L+  +  K  F P+  +Y  +++ +C   KM EA     EM   G  P V  
Sbjct: 262 DQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFT 321

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              LV G + AG + SA  M  K++  G   ++ T  SLI   C++G V   ++++  + 
Sbjct: 322 FSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMN 381

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              + A++ TY +LI A+ K+  + EA  LL  L +    P   +Y P+I G  + G  D
Sbjct: 382 ARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNID 441

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +A    +EM+ K   P++  +T+LI      GR  EA     +M   G TP
Sbjct: 442 EANAIVAEMEEKC-KPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTP 491



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 1/301 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L  ++  F      D + E+  +      Q  V++YN+ L  L +      A  L R ++
Sbjct: 146 LGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELM 205

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R     D  T+ IL+   C++G + EA E L +M   G +P +   ++L+ GL     ++
Sbjct: 206 RSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVD 265

Query: 140 SAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            A+ ++ ++ +K  F  ++ ++ ++I   C+  +++    ++Y + + G   +V T+  L
Sbjct: 266 RARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSAL 325

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    KAG +  A  +   ++  G  P       +I G  R G  +     + EM  +  
Sbjct: 326 VDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMNARNI 385

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           P N   Y++LI+   +  R  EA N L  + +  + P++  ++ V DG    G  D A  
Sbjct: 386 PANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNIDEANA 445

Query: 319 I 319
           I
Sbjct: 446 I 446



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 1/228 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN LL +LC+  L + A  L   M   G +PD R    LV+++  + +   ++E L E  
Sbjct: 111 YNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQ 170

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G    V   +  +  L+    L+ A  +  ++++    LD  TFN LI  +C +G+V+
Sbjct: 171 CSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVD 230

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPI 233
              E+   +   G   D+ TY IL+  + +   +D A  LL  + ++    P    Y  +
Sbjct: 231 EAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTV 290

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           I G  R  + D+A   F EM   G  PN   ++ L+    + G    A
Sbjct: 291 ISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASA 338



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 3/232 (1%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+ + C +G    A+     M   G  P  R    LV     A   + +K+++ + 
Sbjct: 110 TYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLGFLVSSFALADRFDVSKELLAEA 169

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G  +D+  +N+ +  + K   ++  + ++  + +   C D  T+ ILI  +  AG +
Sbjct: 170 QCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDV 229

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTM 267
           DEAF LL ++   G  P    Y  ++ G+ R  Q D A     E+ +K    PN   YT 
Sbjct: 230 DEAFELLGDMGSFGCSPDIVTYNILLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTT 289

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +I+   R  +  EA++   EM   G  P    F  + DG    G  D+A  +
Sbjct: 290 VISGYCRLSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAG--DMASAL 339



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 1/203 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ F K G + +A+ +  K     C   V+   SL+   C     +    L R M
Sbjct: 321 TFSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREM 380

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    +  TY++L++A C S +++EA+  L+ +      P     + ++ G   +G +
Sbjct: 381 NARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGNI 440

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +V +M ++    D  TF  LI   C  G     + ++Y +   G   D  T + L
Sbjct: 441 DEANAIVAEM-EEKCKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRTL 499

Query: 199 IPAVSKAGMIDEAFRLLHNLVED 221
              + K+GM  EA R+   L E+
Sbjct: 500 SSCLLKSGMPGEAARIKETLFEN 522


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 139/301 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S   +S +++   K G + +A ++ NK   F     + +YN+L+ ++C+      A +L 
Sbjct: 319 SEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLF 378

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY+IL++++C  GK+  A  FL +M++ G    V     L+ G    
Sbjct: 379 NNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKL 438

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L +AK + ++MI  G   ++  + SLI   CK GE+     +Y+ +   G+  +  T+
Sbjct: 439 GKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTF 498

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  +  A  + EA +L   +VE    P    Y  +I+G  + G    AF    EM  
Sbjct: 499 TALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVE 558

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG  P+   Y  LI+     GR  EA  ++ ++          CF  +  G    G+ D 
Sbjct: 559 KGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDD 618

Query: 316 A 316
           A
Sbjct: 619 A 619



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 2/321 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I  M+     +S  T ++ I    K+  V  AVE+ N  +    +  V  Y +L+  L
Sbjct: 236 EVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGL 295

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V+ F     ++  MI  GFVP +   + LV+     G +  A + + ++   G  P +
Sbjct: 296 CKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+  +   G L+ A+ + N M  +G   +  T++ LI++ CK G+++  +     
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G+ A V  Y  LI    K G +  A  L   ++ +G KP   +Y  +I G  + G+
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +AF  + EM  KG  PN   +T LI+      R  EA     EM E  + P    +++
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           + +G  +C + +     ELL+
Sbjct: 536 LIEG--HCKEGNTVRAFELLD 554



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 2/287 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A EV  +  +  C   V  YN  +  LC+ +    A  +   +  KG   D  TY  LV 
Sbjct: 234 AREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVL 293

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C   +    +E + EM + GF P       LV GL   G + SA  +VNK+ K G   
Sbjct: 294 GLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAP 353

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            L  +N+LI ++CK G+++    ++ ++   GL  +  TY ILI +  K G +D A   L
Sbjct: 354 SLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFL 413

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + E G K     Y+ +I G  + G+   A   F EM   G  PN  +YT LI+   + 
Sbjct: 414 GKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKE 473

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G    A     EMT  G++P +  F  +  GL  C  + +AE  +L 
Sbjct: 474 GELHNAFRLYHEMTGKGISPNTYTFTALISGL--CHANRMAEANKLF 518



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +D A+    K T    +  V  Y+SL+   C++     A +L   M
Sbjct: 392 TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEM 451

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G  P+   Y  L++ +C  G++  A     EM+ KG +P       L+ GL +A  +
Sbjct: 452 IANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRM 511

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M++   + +  T+N LIE  CK G      E+   + + GL  D  TY+ L
Sbjct: 512 AEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + EA   +++L  +  K     ++ ++ G  + G+ DDA     EM  +G 
Sbjct: 572 ISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGV 631

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             +   Y++LI    R        + L +M + GL P +  +  + D     G   +A
Sbjct: 632 AMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMA 689



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 146/353 (41%), Gaps = 36/353 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S +  T + +I        +  A ++F +   +N     + YN L+   C+   
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L+  M+ KG VPD  TY  L++  CS+G++ EA+EF+ ++  +           
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSA 605

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L+ A     +M+ +G  +DL  ++ LI  I +  +    +++   +   G
Sbjct: 606 LLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQG 665

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  +I A +KAG +  AF L   +V +G  P    Y  +I G+ + G  D A 
Sbjct: 666 LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAE 725

Query: 248 CFFSEMKIKGHPPNRPVY------------------------------TMLITMCGRG-- 275
               EM      PN+  Y                              T+   +  RG  
Sbjct: 726 LLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFC 785

Query: 276 --GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
             GR  EAA  LV M + G++P   C    T   + C + DL E I+L E  L
Sbjct: 786 KLGRIQEAAEVLVNMIDSGISP--DCISYSTIIYEYCRRGDLKEAIKLWESML 836



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 126/287 (43%), Gaps = 1/287 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S ++  + K G +D+A++   +         ++ Y+ L++ +   +       L+++M 
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            +G  PD   Y  +++A   +G ++ A      M  +G  P V     L+ GL   G ++
Sbjct: 663 DQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMD 722

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A+ +  +M+    + +  T+   ++ +   G +E  ++++  V   G  A+  TY ILI
Sbjct: 723 KAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLH-DVLLEGFLANTVTYNILI 781

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G I EA  +L N+++ G  P    Y+ II    RRG   +A   +  M  +G  
Sbjct: 782 RGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVN 841

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   Y  LI  C   G   +A     +M   G+ P    ++ +  G
Sbjct: 842 PDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 128/304 (42%), Gaps = 2/304 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  + K G + NA  ++++ T          + +L+  LC       A  L   M+   
Sbjct: 466 LISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWN 525

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P++ TY +L+   C  G    A E L EM +KG  P       L+ GL + G +  A+
Sbjct: 526 VIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           + +N +  +   L+   F++L+   CK G ++  ++    +   G+  D+  Y +LI  +
Sbjct: 586 EFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGI 645

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +         LL  + + G +P   LY  +I    + G    AF  +  M  +G  PN 
Sbjct: 646 LRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNV 705

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             YT LI    + G   +A     EM      P    +    D L + G  ++ + I+L 
Sbjct: 706 VTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEG--NIEKAIQLH 763

Query: 323 EVSL 326
           +V L
Sbjct: 764 DVLL 767



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 119/264 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           + +L  L  ++ F  A  L   ++  G  PD   Y  +V + C       A+E +  M  
Sbjct: 184 SGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMES 243

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G +  V   ++ ++GL     +  A ++ N +  +G   D+ T+ +L+  +CK  E E 
Sbjct: 244 SGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEA 303

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             EM   + + G     +    L+  + K G I  AF L++ + + G  P   +Y  +I 
Sbjct: 304 GEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALIN 363

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            M + G+ D+A   F+ M  KG  PN   Y++LI    + G+   A ++L +MTE+G+  
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               +  +  G    GK   A+ +
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSL 447



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 110/243 (45%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++R M+  G +P  RT + ++N      + R A     E+   G  P V     +V+ L 
Sbjct: 167 VVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLC 226

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                  A++++ +M   G  L + T+N  I  +CK+  V   VE+   +   GL ADV 
Sbjct: 227 ELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVG 286

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  L+  + K    +    +++ ++E G  P  +  + ++ G+ ++G    AF   +++
Sbjct: 287 TYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKV 346

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           K  G  P+  VY  LI    + G+  EA +    M   GL P    + ++ D     GK 
Sbjct: 347 KKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKL 406

Query: 314 DLA 316
           D+A
Sbjct: 407 DVA 409



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C++     A  ++  MI  G  PD  +Y+ ++  +C  G ++EA +  + M 
Sbjct: 777 YNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESML 836

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           ++G NP     + L+ G    G L  A ++ + M+++G   +  T+NSLI   C
Sbjct: 837 NRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 890



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 2/86 (2%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   + S II E+ + G +  A++++            + YN L++  C       A+
Sbjct: 805 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 864

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWC 98
            L   M+R+G  P++ TY  L++  C
Sbjct: 865 ELRDDMMRRGVKPNRATYNSLIHGTC 890


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 142/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M   N  V   T+ ++ +   K G V+    +  K     C   ++ YN+L+   
Sbjct: 188 KVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGY 247

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L + +  KGF+P  +TY  ++NA+C  GK     + L EM ++G    +
Sbjct: 248 CKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSL 307

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           +  + ++      G    A   V  MI+ G   D+ T+N+LI   C  G+V    E+   
Sbjct: 308 QIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEH 367

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             + GL  +  +Y  LI A SK G    A  LL  + E GH      Y  ++ G+   G+
Sbjct: 368 AIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGE 427

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A     +M  +G  P+  +Y +L++   + GRF  A   LVEM +  +TP +     
Sbjct: 428 VDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNAT 487

Query: 303 VTDGLKNCGKHDLAEKI 319
           + DG    G  D A+K+
Sbjct: 488 LVDGFIRHGNLDEAKKL 504



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 146/317 (46%), Gaps = 9/317 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALC 63
           +E MK   L  + + LS +I  +   GLV  A+E++N      NC   V   NSLL  L 
Sbjct: 119 LETMKSKELIPTCEALSFVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLL- 177

Query: 64  EVKLFHGAYALIRR----MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              + HG   + R+    M+ +    D  T  I+    C  GK+ E +  +++   KG  
Sbjct: 178 ---VHHGKVEIARKVYDEMVDRNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCV 234

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G    G +E A  +  ++  +GF+  ++T+ ++I   CK G+ E   ++
Sbjct: 235 PNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKL 294

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              + + GL   +  +  +I A  K G   EA   +  ++E G +P  + Y  +I G   
Sbjct: 295 LVEMKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCS 354

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           +G+  +A         +G  PN+  YT LI    + G +V A+  L+EM+E G T     
Sbjct: 355 KGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIA 414

Query: 300 FDLVTDGLKNCGKHDLA 316
           +  +  GL   G+ D+A
Sbjct: 415 YGALVHGLVVAGEVDVA 431



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 134/312 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+VS Q  + II+   KHG    A +         C+  +  YN+L+   C    
Sbjct: 298 MKERGLAVSLQIFNGIIDARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGK 357

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+   IR+G  P+K +Y  L++A+  +G+   A E L EMS++G    +     
Sbjct: 358 VREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGA 417

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV GL+ AG ++ A  + +KM+++G + D   +N L+  +CK G      ++   +    
Sbjct: 418 LVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQN 477

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D      L+    + G +DEA +L    +E G          +IKG  + G  +DA 
Sbjct: 478 VTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDAL 537

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M    H P+   Y+ +I    +      A      M +    P    F  + +G 
Sbjct: 538 LCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGF 597

Query: 308 KNCGKHDLAEKI 319
              G  + AEK+
Sbjct: 598 CRNGDLNRAEKV 609



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 128/300 (42%), Gaps = 5/300 (1%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P   S +P     +I  F K+G    A E+  + +       ++ Y +L+  L       
Sbjct: 375 PNKFSYTP-----LIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVD 429

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +  +M+ +G +PD   Y +L++  C  G+   A++ L EM D+   P       LV
Sbjct: 430 VALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNATLV 489

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G +  G L+ AK++    I++G    +   N++I+  CK G +   +  +  +      
Sbjct: 490 DGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHS 549

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  +I    K   +  A R+   +++   KP    +  +I G  R G  + A   
Sbjct: 550 PDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKV 609

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F EM+  G  PN   YT+LI    + G+  +A  +  +M      P    F+ + +GL N
Sbjct: 610 FEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTN 669



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/269 (18%), Positives = 112/269 (41%), Gaps = 15/269 (5%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  +L     +  S    + +I+ + K+G++++A+  F +            Y++++   
Sbjct: 503 KLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGY 562

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +     GA  +   M++K   P+  T+  L+N +C +G +  A++  +EM   GF P V
Sbjct: 563 VKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNV 622

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV--------- 173
               +L+      G L  A     +M+    + +  TFN L+  +  +  +         
Sbjct: 623 VTYTILIGYFCKEGKLTKACFFFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNS 682

Query: 174 --EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                +E +  +   G    ++ Y  ++  + +  M+  A +L   ++  G  P P  + 
Sbjct: 683 QPNLTLEFFGMMISDGWDWRIAAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFI 742

Query: 232 PIIKGMFRRGQFDDAF----CFFSEMKIK 256
            ++ G+   G+  D      C F+E +++
Sbjct: 743 ALLHGLCLEGRLQDWNNVIPCNFNERQLQ 771


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 143/292 (48%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L+ +I      G +  A E++    +  C   V  YN L+  LC++     A  ++  M 
Sbjct: 319 LNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEME 378

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG  P+  TY+ L++++C +G   +A+  L +MS KGF+   +G + ++  L   G L+
Sbjct: 379 EKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLD 438

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++V +M  QG   D+ T+N++I  +C + +++    ++ ++ + G+ A+  TY  LI
Sbjct: 439 EAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLI 498

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+  +G   E  RL + +V  G       Y  +IK + + G  D +     EM  KG  
Sbjct: 499 HALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIK 558

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           PN   Y MLI    + G+  +A     EM   GLTP    ++ + +GL   G
Sbjct: 559 PNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG 610



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 5/287 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++++    K G   +AV + ++     C   ++ Y++LL + C   ++  A A++ +
Sbjct: 352 HTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQ 411

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KGF  + + Y  ++ A    GK+ EA   +QEM  +G  P +   + ++  L N   
Sbjct: 412 MSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQ 471

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A+ +   ++++G V +  T+N+LI  +  SG  +  + +   +   G   DV +Y  
Sbjct: 472 MDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNG 531

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+ K G +D +  LL  ++  G KP    Y  +I  + + G+  DA     EM  +G
Sbjct: 532 LIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLNQG 591

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             P+   Y  LI    + G    A N L ++    + P     D+VT
Sbjct: 592 LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHP-----DIVT 633



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 121/290 (41%), Gaps = 31/290 (10%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC +     A AL+R M R G VPD   Y  +++A  + G + EA   L EM   G   
Sbjct: 189 ALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAA 248

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS---------- 170
            V   + +V GL   G++  A ++V++M+  G    + T+  L+  +C++          
Sbjct: 249 DVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAML 308

Query: 171 ---------------------GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                                G++    E+Y  +   G   DV TY IL+  + K G   
Sbjct: 309 GRVPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCG 368

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A R+L  + E G  P    Y+ ++    R G +DDA     +M  KG   N   Y  +I
Sbjct: 369 SAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGII 428

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G+ G+  EA   + EM   G  P    ++ +   L N  + D AE I
Sbjct: 429 YALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHI 478



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 121/273 (44%), Gaps = 4/273 (1%)

Query: 1   MWKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW      ++ M     S++ Q  + II   GK G +D A+ +  +  +  C+  +  YN
Sbjct: 401 MWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYN 460

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++++ LC       A  +   ++ +G V +  TY  L++A   SG+ +E      EM   
Sbjct: 461 TIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLH 520

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G    V   + L++ L   G ++ +  ++ +M+ +G   +  ++N LI  +CK+G+V   
Sbjct: 521 GCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDA 580

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +   GL  D+ TY  LI  + K G    A  LL  L  +   P    Y  +I  
Sbjct: 581 LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISW 640

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             +    DDA     +    G  PN   + M++
Sbjct: 641 HCKVRLLDDASMLLDKAVSGGIVPNERTWGMMV 673



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 135/285 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  F ++G+ D+A  + ++ +A         YN +++AL +      A  L++ M
Sbjct: 388 TYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEM 447

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY  ++   C++ +M EA+     + ++G        + L+  LL++G  
Sbjct: 448 KSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRW 507

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   ++ N+M+  G  LD+ ++N LI+ +CK G V+  + +   +   G+  +  +Y +L
Sbjct: 508 QEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNML 567

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG + +A  L   ++  G  P    Y  +I G+ + G    A     ++  +  
Sbjct: 568 INELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 627

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P+   Y +LI+   +     +A+  L +    G+ P  R + ++
Sbjct: 628 HPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMM 672



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 119/301 (39%), Gaps = 31/301 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G V  A  + ++     C   V  +N ++  LC +     A  L+ RM+  G
Sbjct: 221 VIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHG 280

Query: 83  FVPDKRTYAILVNAWC-------------------------------SSGKMREAQEFLQ 111
             P   TY  L+   C                               + GK+  A E  +
Sbjct: 281 CTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLAEGKLARATELYE 340

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG  P V   ++L+ GL   G   SA +M+++M ++G   ++ T+++L+ + C++G
Sbjct: 341 MMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNG 400

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +    M   +   G   +   Y  +I A+ K G +DEA RL+  +   G KP    Y 
Sbjct: 401 MWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYN 460

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  +    Q D+A   F  +  +G   N   Y  LI      GR+ E      EM   
Sbjct: 461 TIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLH 520

Query: 292 G 292
           G
Sbjct: 521 G 521



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 4/241 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L  L        A  L RRM+R    P   T+ +   A C  G+ R+A   L+ M+
Sbjct: 148 YNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRARDALALLRGMA 207

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P       ++  L+  G +  A  ++++M+  G   D+ TFN ++  +C  G V 
Sbjct: 208 RHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVR 267

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +   G    V TY  L+  + +    DEA+ +L  + E        +   +I
Sbjct: 268 EAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVN----VVMLNTVI 323

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G    G+   A   +  M  KG PP+   Y +L+    + GR   A   L EM E G  
Sbjct: 324 RGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCA 383

Query: 295 P 295
           P
Sbjct: 384 P 384


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 147/327 (44%), Gaps = 37/327 (11%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I    + GLV+ A   F +  A      V+ YNSLL   C+      A  L   +
Sbjct: 1227 TYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL 1286

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             R G  P   TY IL++ +C  G + EA+   +EM ++G  P V    +L++G LN   L
Sbjct: 1287 RRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSL 1346

Query: 139  ESAKQMVNKMIKQGF----------------------------VLDLE-------TFNSL 163
              A++  ++M+ +G                             VL LE       T+N L
Sbjct: 1347 AMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNIL 1406

Query: 164  IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
            I  +CK+G ++   E+   +   GL  D  TY  LI A  + G++ EA ++ +N++ DG 
Sbjct: 1407 IHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGL 1466

Query: 224  KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
             P    +  II    RRG    A+ +F +M  +G  PN   Y +LI    R GR   A++
Sbjct: 1467 LPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASH 1526

Query: 284  YLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +  EM E GL      + L+ DG  NC
Sbjct: 1527 HFHEMLERGLVANKYTYTLLIDG--NC 1551



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 86/185 (46%)

Query: 52   VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             + YN L+  LC+      A  L  +M+  G  PD  TY  L++A C  G +REA++   
Sbjct: 1400 TVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN 1459

Query: 112  EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
             M   G  P      +++      G L SA     KM+++G   +  T+N LI  +C+ G
Sbjct: 1460 NMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMG 1519

Query: 172  EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
              +     ++ + + GL A+  TY +LI    K G  ++A R    + ++G  P    + 
Sbjct: 1520 RTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHK 1579

Query: 232  PIIKG 236
             ++KG
Sbjct: 1580 ALLKG 1584



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 123/277 (44%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T +++I+ + + G ++ A  +  +     C   V  Y  L+     V+    A      M
Sbjct: 1297 TYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEM 1356

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + KG  PD   Y   + A    G +  A E  + +  +G +      ++L+ GL   G L
Sbjct: 1357 LSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNL 1416

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            + AK++  KM+  G   D  T+  LI   C+ G +    +++ ++   GL     T+ ++
Sbjct: 1417 KDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVI 1476

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I A  + G +  A+     ++E+G +P    Y  +I  + R G+   A   F EM  +G 
Sbjct: 1477 IHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGL 1536

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              N+  YT+LI    + G + +A  +  EM + G+ P
Sbjct: 1537 VANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHP 1573



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 2/250 (0%)

Query: 36   AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
            A E F++  +   Q     YN+ + A   +     A+ L   ++ +G   D  TY IL++
Sbjct: 1349 AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIH 1408

Query: 96   AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
              C +G +++A+E   +M   G  P       L+      G L  A+++ N MI  G + 
Sbjct: 1409 GLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLP 1468

Query: 156  DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
               TF  +I   C+ G +      +  + + G+  +  TY +LI A+ + G    A    
Sbjct: 1469 SAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHF 1528

Query: 216  HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            H ++E G       Y  +I G  + G ++DA  F+ EM   G  P+   +  L+   G  
Sbjct: 1529 HEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLK--GFD 1586

Query: 276  GRFVEAANYL 285
            G       YL
Sbjct: 1587 GHVHHTIEYL 1596



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 2/207 (0%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            +S    T +++I    K G + +A E+  K  +   Q   + Y  L+ A CE  L   A 
Sbjct: 1396 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREAR 1455

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +   MI  G +P   T+ ++++A+C  G +  A  + ++M ++G  P     ++L+  L
Sbjct: 1456 KIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G  + A    ++M+++G V +  T+  LI+  CK G  E  +  Y+ + + G+  D 
Sbjct: 1516 CRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDY 1575

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLV 219
             T+K L+      G +      L N++
Sbjct: 1576 LTHKALLKGFD--GHVHHTIEYLDNVI 1600



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 11/320 (3%)

Query: 13   LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALCEVKLF 68
            L + P   T + +++ F K G  D    +  +       C    + YN ++  L      
Sbjct: 1113 LGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDL 1172

Query: 69   HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
              A  L+  M R        TY  L+    + G +++  +   EM ++G  P V   + +
Sbjct: 1173 EEAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAM 1231

Query: 129  VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
            + GLL +G +E+A+    +M   G + D+ T+NSL+   CK+G ++  + ++  + + GL
Sbjct: 1232 IHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGL 1291

Query: 189  CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
               V TY ILI    + G ++EA  L   + E G  P    Y  ++KG         A  
Sbjct: 1292 APTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMARE 1351

Query: 249  FFSEMKIKGHPPNRPVYTMLI---TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            FF EM  KG  P+   Y   I    + G   R  E    L  M E G++  +  ++++  
Sbjct: 1352 FFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVL--MLE-GISSDTVTYNILIH 1408

Query: 306  GLKNCGKHDLAEKIELLEVS 325
            GL   G    A+++++  VS
Sbjct: 1409 GLCKTGNLKDAKELQMKMVS 1428



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 1/277 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T +++I    + G ++ A E+  +    + +     YN L+  L         Y L   M
Sbjct: 1158 TYNVVITGLTRKGDLEEAAELV-EGMRLSKKASSFTYNPLITGLLARGCVKKVYDLQLEM 1216

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              +G +P   TY  +++    SG +  AQ    EM   G  P V   + L+ G   AG L
Sbjct: 1217 ENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNL 1276

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            + A  +   + + G    + T+N LI+  C+ G++E    +   + + G   +V TY IL
Sbjct: 1277 KEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTIL 1336

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            +        +  A      ++  G +P    Y   I      G    AF     + ++G 
Sbjct: 1337 MKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGI 1396

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +   Y +LI    + G   +A    ++M   GL P
Sbjct: 1397 SSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQP 1433



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 7/206 (3%)

Query: 110  LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
             +EM+  G  P V+  + +++ L +A   +    +  +M++ G    + T+N+L+++  K
Sbjct: 1072 FREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVTYNTLLDSFLK 1131

Query: 170  SGEVEFCVEMYYSVCKLG---LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
             G  +    +   +   G   L  DV TY ++I  +++ G ++EA  L+  +     K  
Sbjct: 1132 EGRKDKVAMLLKEMETRGSGCLPNDV-TYNVVITGLTRKGDLEEAAELVEGM-RLSKKAS 1189

Query: 227  PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY-L 285
               Y P+I G+  RG     +    EM+ +G  P    Y  +I    + G  VEAA    
Sbjct: 1190 SFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSG-LVEAAQVKF 1248

Query: 286  VEMTEMGLTPISRCFDLVTDGLKNCG 311
             EM  MGL P    ++ + +G    G
Sbjct: 1249 AEMRAMGLLPDVITYNSLLNGYCKAG 1274


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/251 (30%), Positives = 125/251 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G+V  A  VF   T    +  +  YN+L+   C  +L + A  +   M
Sbjct: 305 TFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIM 364

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IRKG  P   +Y IL+N +C S +M EA+  L EM  K  NP       L+QGL   G  
Sbjct: 365 IRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP 424

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M   G   +L T+  L++  CK G ++  +++  S+ +  L  ++  Y IL
Sbjct: 425 KEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTIL 484

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  AG ++ A  L   L  DG +P    Y  +IKG+ + G  D+A+  F +M+  G 
Sbjct: 485 IEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGF 544

Query: 259 PPNRPVYTMLI 269
            PN   Y ++I
Sbjct: 545 LPNSCSYNVMI 555



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 152/319 (47%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L + P   T + +I      G +  AVE+FN+      +  V+ Y +++  LC+
Sbjct: 151 LGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCK 210

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  + ++M + G  P+  TY+ ++++ C    + +A EFL EM ++G  P V  
Sbjct: 211 TGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFT 270

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + +V G  N G L  A ++  +M+ +  + +  TF  L++ +CK G V     ++ ++ 
Sbjct: 271 YNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMT 330

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D+STY  L+       +++EA ++   ++  G  P    Y  +I G  +  + D
Sbjct: 331 EKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMD 390

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    +EM  K   P+   Y+ L+    + GR  EA N   EM   G  P    + ++ 
Sbjct: 391 EAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 305 DGLKNCGKHDLAEKIELLE 323
           DG   C    L E ++LL+
Sbjct: 451 DGF--CKHGHLDEALKLLK 467



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 145/301 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I    K G    AV+VF K     C+  V+ Y++++ +LC+ +L + A   +  M
Sbjct: 200 SYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEM 259

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY  +V+ +C+ G++ EA    +EM  +   P      +LV GL   G +
Sbjct: 260 VERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMV 319

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ +   M ++G   D+ T+N+L++  C    +    +++  + + G      +Y IL
Sbjct: 320 SEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNIL 379

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +DEA  LL  +      P    Y+ +++G+ + G+  +A   F EM   G 
Sbjct: 380 INGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGP 439

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +L+    + G   EA   L  M E  L P    + ++ +G+   GK ++A++
Sbjct: 440 HPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKE 499

Query: 319 I 319
           +
Sbjct: 500 L 500



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 39/341 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+   K  LV++A+E  ++         V  YNS++   C +   + A  L + M
Sbjct: 235 TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEM 294

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +P+  T+ ILV+  C  G + EA+   + M++KG  P +   + L+ G      +
Sbjct: 295 VGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLM 354

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMY----------YSVC 184
             AK++   MI++G      ++N LI   CKS  ++       EMY          YS  
Sbjct: 355 NEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTL 414

Query: 185 KLGLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
             GLC                      ++ TY IL+    K G +DEA +LL ++ E   
Sbjct: 415 MQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKL 474

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    Y  +I+GMF  G+ + A   FS++   G  P+   YT++I    + G   EA +
Sbjct: 475 EPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYD 534

Query: 284 YLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
              +M + G  P S  ++++  G L+N    D +  I L++
Sbjct: 535 LFRKMEDDGFLPNSCSYNVMIQGFLQN---QDSSTAIRLID 572



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 135/305 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + ++ +  +L+++I    +   VD +V V  K          + +N+L+  LC    
Sbjct: 119 MDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGK 178

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+++G  P+  +Y  ++N  C +G    A +  ++M   G  P V     
Sbjct: 179 IKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYST 238

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A + +++M+++G   ++ T+NS++   C  G++     ++  +    
Sbjct: 239 IIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRD 298

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  T+ IL+  + K GM+ EA  +   + E G +P  S Y  ++ G   +   ++A 
Sbjct: 299 VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAK 358

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P    Y +LI    +  R  EA + L EM    L P +  +  +  GL
Sbjct: 359 KVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 418

Query: 308 KNCGK 312
              G+
Sbjct: 419 CQLGR 423



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 99/209 (47%), Gaps = 2/209 (0%)

Query: 7   LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L + Y+ +++P T+  S +++   + G    A+ +F +  ++     ++ Y  LL   C+
Sbjct: 396 LAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCK 455

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L++ M  K   P+   Y IL+     +GK+  A+E   ++   G  P +R 
Sbjct: 456 HGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRT 515

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             ++++GLL  G  + A  +  KM   GF+ +  ++N +I+   ++ +    + +   + 
Sbjct: 516 YTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMV 575

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                 ++ST+++L+   S+  +I +  R
Sbjct: 576 GKRFSVNLSTFQMLLDLESQDEIISQFMR 604



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 3/216 (1%)

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
             FL   S K  + P +  D  V    N   ++ A     +M++      +  F   + +
Sbjct: 44  HHFLTSTSTKKPSLP-KNNDGFVSNNSNNVCVDDALASFYRMVRINPRPSVVEFGKFLGS 102

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
             K  +    V +   +    +  +V +  ILI  + +   +D +  +L  + + G  P 
Sbjct: 103 FAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPD 162

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              +  +I G+   G+  +A   F+EM  +GH PN   YT +I    + G    A +   
Sbjct: 163 AITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFK 222

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +M + G  P    +  + D L  C    + + +E L
Sbjct: 223 KMEQNGCKPNVVTYSTIIDSL--CKDRLVNDAMEFL 256



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            K ++ MK   L  +    +++IE     G ++ A E+F+K      +  +  Y  ++  
Sbjct: 463 LKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKG 522

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +  L   AY L R+M   GF+P+  +Y +++  +  +     A   + EM  K F+  
Sbjct: 523 LLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFSVN 582

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +    +L+        LES  +++++ ++
Sbjct: 583 LSTFQMLLD-------LESQDEIISQFMR 604


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 140/293 (47%), Gaps = 5/293 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+++++    + G +D A  + N   +F C   V+ YN+L+  LC +     A +L++ +
Sbjct: 178 TVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEV 237

Query: 79  IRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
              G F PD  +Y  +++ +C   KM E      EM   G  P     + L+ G    G 
Sbjct: 238 CLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGD 297

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + SA  +  KM+ QG V D+ TF SLI    + G+V   ++M++ +    + A + T+ +
Sbjct: 298 MASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSV 357

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  +     + +A  +L  L E    P P +Y P+I G  + G  D+A    +EM++  
Sbjct: 358 LVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNR 417

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             P++  +T+LI      GR  EA     +M  +G  P     ++  + L++C
Sbjct: 418 CKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPD----EITVNNLRSC 466



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 128/303 (42%), Gaps = 1/303 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           + L  ++  +   G +D + E+       N     ++YN L   L        A  L R 
Sbjct: 107 RLLGFLVWSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRE 166

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +IR  + P   T  IL+   C +G++ EA   L ++   G  P V   + L+ GL     
Sbjct: 167 LIRLRYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINE 226

Query: 138 LESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           ++ A+ ++ ++   G F  D+ ++ ++I   CK  ++E    ++  + + G   +  T+ 
Sbjct: 227 VDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFN 286

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI    K G +  A  L   ++  G  P  + +  +I G FR GQ   A   + +M  K
Sbjct: 287 ALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDK 346

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                   +++L++      R  +A + L  + E  + P    ++ V DG    G  D A
Sbjct: 347 NIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEA 406

Query: 317 EKI 319
            KI
Sbjct: 407 NKI 409



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 130/310 (41%), Gaps = 37/310 (11%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           L Y+ LL +LC   L H A  +   M   G +PD R    LV ++   G++  ++E L +
Sbjct: 72  LTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLGFLVWSYAIVGRLDVSRELLAD 131

Query: 113 M--SDKGFN---------------------------------PPVRGRDLLVQGLLNAGY 137
           +  ++ G N                                 P     ++L++GL  AG 
Sbjct: 132 VQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGE 191

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYK 196
           ++ A +++N +   G + D+ T+N+LI  +C+  EV+    +   VC  G    DV +Y 
Sbjct: 192 IDEAFRLLNDLRSFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYT 251

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I    K   ++E   L   ++  G  P    +  +I G  + G    A   + +M ++
Sbjct: 252 TIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQ 311

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDL 315
           G  P+   +T LI    R G+  +A +   +M +  +      F ++  GL N  + H  
Sbjct: 312 GCVPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKA 371

Query: 316 AEKIELLEVS 325
            + + LL  S
Sbjct: 372 RDILRLLNES 381



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 94/203 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  FGK G + +A+ ++ K     C   V  + SL+     +   H A  +  +M
Sbjct: 284 TFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKM 343

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K       T+++LV+  C++ ++ +A++ L+ +++    P     + ++ G   +G +
Sbjct: 344 NDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSGNV 403

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++V +M       D  TF  LI   C  G +   + +++ +  +G   D  T   L
Sbjct: 404 DEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAPDEITVNNL 463

Query: 199 IPAVSKAGMIDEAFRLLHNLVED 221
              + KAGM  EA R+   L ++
Sbjct: 464 RSCLLKAGMPGEAARVKKVLAQN 486



 Score = 38.5 bits (88), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 4/159 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW     M   N+  +  T S+++     +  +  A ++       +      +YN ++ 
Sbjct: 339 MWHK---MNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVID 395

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  ++  M      PDK T+ IL+   C  G+M EA     +M   G  P
Sbjct: 396 GYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAVGCAP 455

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
                + L   LL AG    A + V K++ Q   L + +
Sbjct: 456 DEITVNNLRSCLLKAGMPGEAAR-VKKVLAQNLTLGITS 493


>gi|357140802|ref|XP_003571952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Brachypodium distachyon]
          Length = 501

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 141/292 (48%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ +E M    LS+S +T  L+I   G+ GL    VE F K ++FN +     +N++L 
Sbjct: 195 MWRLLEEMTENGLSISARTFHLLICTCGQAGLRRRLVERFIKSSSFNYRPFRNSFNAILH 254

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  ++ +     + ++M+ +G  PD  TY I++ A    GK+ +    L EM   G  P
Sbjct: 255 TLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVMRAKYMLGKLDQFHRLLDEMGKNGLTP 314

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L+  L       +A  ++N M   G V  +  F +LI+ + ++G +E C   +
Sbjct: 315 DLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHFTNLIDGLSRAGNLEACKYFF 374

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     A  ++EA +L  +++  G  P    Y  +I+G+   
Sbjct: 375 DEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLVRGKLPNVYTYNTMIRGLCIV 434

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD A     +M ++G  PN  VY+ L+      G+  EA N +  M   G
Sbjct: 435 GEFDKACSMLKDMDLRGCTPNFSVYSTLVCRLRNAGKDAEANNVIKYMANKG 486



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 6/266 (2%)

Query: 54  LYNSLL--FALC-EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           +YN ++  FA C EVK     + L+  M   G     RT+ +L+     +G  R   E  
Sbjct: 178 MYNLVMKVFAQCGEVK---AMWRLLEEMTENGLSISARTFHLLICTCGQAGLRRRLVERF 234

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            + S   + P     + ++  LL        + +  KM+ +G   D+ T+N ++      
Sbjct: 235 IKSSSFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVMRAKYML 294

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+++    +   + K GL  D+ TY IL+  + K      A  LL+ + + G  P    +
Sbjct: 295 GKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCVPSVLHF 354

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G+ R G  +    FF EM  KG  P+   YT++IT         EA     +M  
Sbjct: 355 TNLIDGLSRAGNLEACKYFFDEMMKKGCEPDVVCYTVMITGYVAAAELEEAQKLFDDMLV 414

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLA 316
            G  P    ++ +  GL   G+ D A
Sbjct: 415 RGKLPNVYTYNTMIRGLCIVGEFDKA 440



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 35/197 (17%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++G+      +N +++   + GEV+    +   + + GL     T+ +LI    +AG+  
Sbjct: 169 QEGYHHSTGMYNLVMKVFAQCGEVKAMWRLLEEMTENGLSISARTFHLLICTCGQAGLRR 228

Query: 210 --------------EAFR-----LLHNLVE----------------DGHKPFPSLYAPII 234
                           FR     +LH L+                 +GH P    Y  ++
Sbjct: 229 RLVERFIKSSSFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMLMEGHSPDVLTYNIVM 288

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +  +  G+ D       EM   G  P+   Y +L+ + G+G + + A N L  M+++G  
Sbjct: 289 RAKYMLGKLDQFHRLLDEMGKNGLTPDLHTYNILLHVLGKGDKPLAALNLLNYMSDVGCV 348

Query: 295 PISRCFDLVTDGLKNCG 311
           P    F  + DGL   G
Sbjct: 349 PSVLHFTNLIDGLSRAG 365


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 155/343 (45%), Gaps = 35/343 (10%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL  +   L+ ++    K G    AVE++ +         ++  N+L+  LC+       
Sbjct: 461 NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQET 520

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+R M+ +G V D+ TY  L++  C  GK++E  E  +EM  KG  P +   +LL+ G
Sbjct: 521 LKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHG 580

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----------------- 174
           L NA  ++ A ++ ++  K G+V ++ T+  +I+  CK+ +VE                 
Sbjct: 581 LCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELN 640

Query: 175 ----------FCVEMYYSVC--------KLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                     +C+    +            G+    +TY  L+  +   G++D+A  LL 
Sbjct: 641 SVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLD 700

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + ++G  P    Y  II G  + GQ +       EM      PN+  YT++I    + G
Sbjct: 701 EMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLG 760

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +  EAA  L EMTE G+ P +  ++  T+GL   GK + A K+
Sbjct: 761 KTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKV 803



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 2/307 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP +++L  +I+ F K   +  A  V  +            ++ ++  LC    F  A 
Sbjct: 392 ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTAL 451

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             IR M+ +   P+      LV+  C +GK  EA E    +  KGF P +   + L+ GL
Sbjct: 452 HFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGL 511

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG ++   +++  M+++G V D  T+N+LI   CK G+V+   E+   + K G+  D+
Sbjct: 512 CKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDI 571

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+ +L+  +  A  IDEA RL H   ++G+ P    Y  +I G  +  + ++     +E
Sbjct: 572 YTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNE 631

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +  K    N  VY  LI      G    A     +M   G+      +  +  GL N G 
Sbjct: 632 LVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGL 691

Query: 313 HDLAEKI 319
            D A+ +
Sbjct: 692 VDDAKHL 698



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 137/317 (43%), Gaps = 39/317 (12%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S+ I    K   +D A  V  + +        ++YN+L+   C++     A 
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEAL 381

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG-------- 124
            +   M+ KG  P+  T   L+  +C S ++ +A+  L+EM  +G  P  +G        
Sbjct: 382 KIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL-PINQGSFSMVINW 440

Query: 125 -------------------RDL---------LVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
                              R+L         LV GL  AG    A ++  +++ +GFV +
Sbjct: 441 LCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPN 500

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           + T N+LI  +CK+G ++  +++   + + GL  D  TY  LI    K G + E F L  
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKE 560

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +V+ G +P    +  ++ G+    + D+A   + E K  G+ PN   Y ++I    +  
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKAN 620

Query: 277 RFVEAANYLVEMTEMGL 293
           +  E  N L E+    L
Sbjct: 621 KVEEGENLLNELVSKKL 637



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 126/271 (46%), Gaps = 2/271 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L+++++ A C+      A  L  +M + G  P+  TY  +++  C SG++ EA  F +
Sbjct: 256 VHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKE 315

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +  +P +    + + GL+    ++ A  ++ +M + GFV +   +N+LI+  CK G
Sbjct: 316 KMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMG 375

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   +++   +   G+  +  T   LI    K+  I +A  +L  ++  G       ++
Sbjct: 376 NISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFS 435

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  +  + +F  A  F  EM ++   PN  + T L++   + G+  EA      +   
Sbjct: 436 MVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK 495

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G  P     + +  GL  C   ++ E ++LL
Sbjct: 496 GFVPNIVTSNALIHGL--CKAGNMQETLKLL 524



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 5/286 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V    E+  +      Q  +  +N LL  LC       A  L    
Sbjct: 538 TYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHEC 597

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G+VP+  TY ++++ +C + K+ E +  L E+  K         + L++     G +
Sbjct: 598 KKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A ++ + M  +G +L   T++SL+  +C  G V+    +   + K GL  +V  Y  +
Sbjct: 658 NAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK G +++   +L  +      P    Y  +I G  + G+  +A    +EM  KG 
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGI 777

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            P+   Y        + G+  EA     EM+   +     C D +T
Sbjct: 778 LPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAV-----CLDEIT 818



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 2/218 (0%)

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           A +    ++ KG  P ++    L+  L+ A  L+ + ++ + +   G + D+  F+++I 
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             CK    +  + ++  + KLG+  +V TY  +I  + K+G +DEA+R    +V++   P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y+  I G+ +  + D+A C   EM   G  PN  VY  LI    + G   EA    
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +M   G++P S   + +  G   C    + +   +LE
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGF--CKSDQIGQAENVLE 420



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+SL+  LC + L   A  L+  M ++G +P+   Y  ++  +   G+M +    LQEMS
Sbjct: 679 YSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMS 738

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
               +P      +++ G    G  + A +++N+M ++G + D  T+N+    +CK G+VE
Sbjct: 739 SHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVE 798

Query: 175 FCVEMYYSVCKLGLCADVSTYKILI 199
              ++   +    +C D  TY  LI
Sbjct: 799 EAFKVCDEMSSGAVCLDEITYTTLI 823



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   + +S  T S ++      GLVD+A  + ++         V+ Y +++    ++  
Sbjct: 667 MKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQ 726

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            +    +++ M      P+K TY I+++ +C  GK +EA + L EM++KG  P     + 
Sbjct: 727 MNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNA 786

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
              GL   G +E A ++ ++M      LD  T+ +LI+
Sbjct: 787 FTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLID 824



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 65/142 (45%)

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
           F  +++  + K GL   + T   L+ ++ KA  + +++ +   +   G  P   L++ +I
Sbjct: 204 FAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMI 263

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               +  + DDA   FS+M+  G  PN   Y  +I    + GR  EA  +  +M +  ++
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVS 323

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P    + +  +GL    K D A
Sbjct: 324 PSLITYSVFINGLIKLEKIDEA 345


>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 154/326 (47%), Gaps = 10/326 (3%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  ++ M+   L  +P+T ++I E +   G  D A+++F       C Q +  +N++L 
Sbjct: 120 LWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKIFFSMHEHGCVQDLNSFNTILD 179

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    A   + ++ R  F        IL+  +  +G+++EA EF  +M  +    
Sbjct: 180 VLCKSKRVEMADNKLFKVFRGRF-------RILLKGFFRAGQLKEAWEFFLQMKKRKCEI 232

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     +V G   AG +  A+++ N+MI +G +  + T+N+ I+ +CK   VE  + ++
Sbjct: 233 DVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVF 292

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G   + +TY ++I  +   G +++A   +  + +D  +P   +Y  +I+     
Sbjct: 293 EEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDA 352

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT---MCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + +     F +M      PN   Y +LI+   +  +    + A   L+EM E G  P  
Sbjct: 353 EEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRK 412

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLE 323
             F+ V DGL   G  D A++I  L+
Sbjct: 413 FTFNRVLDGLLLTGNQDFAKEILRLQ 438


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 152/351 (43%), Gaps = 36/351 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     +  Y      Q  +++I +F K G + +A  +FN+      +   + +N+L+ 
Sbjct: 207 IWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLIN 266

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ +     + L + M      PD  TY++L++  C  G++  A++   EM  +G  P
Sbjct: 267 GLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRP 326

Query: 121 -----------PVRGR------------------------DLLVQGLLNAGYLESAKQMV 145
                        R R                        + L+ GL   G +  A+++V
Sbjct: 327 NGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M   G   D  T+ +LI+  CK G++E  +E+   + + G+  D   +  LI    + 
Sbjct: 387 DEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G + +A R L  +VE G KP  + Y  +I G  ++G     F    EM+I GH P    Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDL 315
            +L+    + G+   A   L  M  +G+TP    ++++ +G  KN    DL
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDL 557



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 126/272 (46%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L+   C+      A  +   + ++G  P   ++  L+N  C S  + E     +
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKK 282

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M +    P V    +L+ GL   G L+ A+Q+ ++M ++G   +  TF +LI+  C+S 
Sbjct: 283 TMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSR 342

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  +  Y+ +  +G+  D+  Y  L+  + K G +++A +L+  +   G KP    Y 
Sbjct: 343 RIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYT 402

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  + G  + A      M  +G   +   +T LI+   R GR  +A   L EM E 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+ P    + +V DG   C K ++    +LL+
Sbjct: 463 GMKPDDATYTMVIDGY--CKKGNVKMGFKLLK 492



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 123/275 (44%), Gaps = 3/275 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K G +D A ++F++      +   + + +L+   C  +    A     +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQM 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD   Y  L+N  C  G + +A++ + EM   G  P       L+ G    G L
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDL 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA ++   M ++G VLD   F +LI   C+ G V         + + G+  D +TY ++
Sbjct: 415 ESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMV 474

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +   F+LL  +  +GHKP    Y  ++ G+ ++GQ  +A      M   G 
Sbjct: 475 IDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGV 534

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            P+   Y +L+    + G+   A + L    E GL
Sbjct: 535 TPDDITYNILLEGHCKNGK---AEDLLKLRNEKGL 566



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 1/229 (0%)

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           A+++  W  SG + +A +  + + +  F  P  G   L+  ++N+    +     +++++
Sbjct: 158 ALMIAYW-DSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF   ++ +N LI   CK G +     ++  + K GL     ++  LI  + K+  +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            FRL   + E+   P    Y+ +I G+ + G+ D A   F EM+ +G  PN   +T LI 
Sbjct: 277 GFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              R  R   A N   +M  MG+ P    ++ + +GL   G  + A K+
Sbjct: 337 GQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    +     T +++I+ + K G V    ++  +      +  V+ YN L+  L
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C+      A  L+  M+  G  PD  TY IL+   C +GK   A++ L+  ++KG 
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK---AEDLLKLRNEKGL 566


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 152/351 (43%), Gaps = 36/351 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W     +  Y      Q  +++I +F K G + +A  +FN+      +   + +N+L+ 
Sbjct: 207 IWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLIN 266

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ +     + L + M      PD  TY++L++  C  G++  A++   EM  +G  P
Sbjct: 267 GLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRP 326

Query: 121 -----------PVRGR------------------------DLLVQGLLNAGYLESAKQMV 145
                        R R                        + L+ GL   G +  A+++V
Sbjct: 327 NGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M   G   D  T+ +LI+  CK G++E  +E+   + + G+  D   +  LI    + 
Sbjct: 387 DEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G + +A R L  +VE G KP  + Y  +I G  ++G     F    EM+I GH P    Y
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDL 315
            +L+    + G+   A   L  M  +G+TP    ++++ +G  KN    DL
Sbjct: 507 NVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAEDL 557



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L+   C+      A  +   + ++G  P   ++  L+N  C S  + E     +
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKK 282

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M +    P V    +L+ GL   G L+ A+Q+ ++M ++G   +  TF +LI+   +S 
Sbjct: 283 TMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSR 342

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  +  Y+ +  +G+  D+  Y  L+  + K G +++A +L+  +   G KP    Y 
Sbjct: 343 RMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYT 402

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  + G  + A      M  +G   +   +T LI+   R GR  +A   L EM E 
Sbjct: 403 TLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA 462

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+ P    + +V DG   C K ++    +LL+
Sbjct: 463 GMKPDDATYTMVIDGY--CKKGNVKMGFKLLK 492



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 122/275 (44%), Gaps = 3/275 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K G +D A ++F++      +   + + +L+      +    A     +M
Sbjct: 295 TYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQM 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD   Y  L+N  C  G + +A++ + EM   G  P       L+ G    G L
Sbjct: 355 LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDL 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA ++   M ++G VLD   F +LI   C+ G V         + + G+  D +TY ++
Sbjct: 415 ESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMV 474

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +   F+LL  +  +GHKP    Y  ++ G+ ++GQ  +A      M   G 
Sbjct: 475 IDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGV 534

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            P+   Y +L+    + G+   A + L    E GL
Sbjct: 535 TPDDITYNILLEGHCKNGK---AEDLLKLRNEKGL 566



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 108/229 (47%), Gaps = 1/229 (0%)

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           A+++  W  SG + +A +  + + +  F  P  G   L+  ++N+    +     +++++
Sbjct: 158 ALMIAYW-DSGFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILE 216

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF   ++ +N LI   CK G +     ++  + K GL     ++  LI  + K+  +DE
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            FRL   + E+   P    Y+ +I G+ + G+ D A   F EM+ +G  PN   +T LI 
Sbjct: 277 GFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              R  R   A N   +M  MG+ P    ++ + +GL   G  + A K+
Sbjct: 337 GQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKL 385



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    +     T +++I+ + K G V    ++  +      +  V+ YN L+  L
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGL 513

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C+      A  L+  M+  G  PD  TY IL+   C +GK   A++ L+  ++KG 
Sbjct: 514 CKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK---AEDLLKLRNEKGL 566


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 154/344 (44%), Gaps = 35/344 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S    T + +I+ +GK G ++   ++  +     C+  V+ YN+L+   C+   
Sbjct: 220 MKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGR 279

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY+    M R+G + +  T++  V+A+C +G +REA +   +M  KG  P       
Sbjct: 280 MERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTC 339

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV G   AG L+ A  + N+M++QG  L++ T+  L++ +CK G+V    +++  + + G
Sbjct: 340 LVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG 399

Query: 188 LCA-----------------------------------DVSTYKILIPAVSKAGMIDEAF 212
           + A                                   DVS Y  LI  +     +DEA 
Sbjct: 400 IRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAK 459

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL+ + E G KP   +Y  I+   F+  +  +A     +M   G  PN   Y  L+   
Sbjct: 460 SLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGL 519

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            + G   EA ++  +M ++GL P  + +  + DGL   G+ D A
Sbjct: 520 CKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKA 563



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 4/280 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S  P  +  ++      GL+D+AV    +             N +L  L   +    A+ 
Sbjct: 125 SALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWR 184

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L  ++      P+  T+ I+++  C  G + EA+  L  M   G +P V   + L+ G  
Sbjct: 185 LFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYG 240

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G LE  +++V +M   G   D+ T+N+L+   CK G +E     +  + + G+ A+V 
Sbjct: 241 KCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVV 300

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+   + A  K GM+ EA +L   +   G KP    Y  ++ G  + G+ DDA    +EM
Sbjct: 301 TFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEM 360

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G P N   YT+L+    + G+  EA +    M   G+
Sbjct: 361 VQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGI 400



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T S  ++ F K+G+V  A+++F +      +   + Y  L+   C+   
Sbjct: 290 MKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR 349

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+++G   +  TY +LV+  C  GK+ EA++  + M   G    +R  +L
Sbjct: 350 LDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAG----IRANEL 405

Query: 128 LVQGLLNAGYL----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           L   L++  ++    E A  ++++M  +G  LD+  + +LI  +C   +++    +   +
Sbjct: 406 LYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKM 465

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            + GL  +   Y  ++ A  KA    EA  LL  +++ G +P    Y  ++ G+ + G  
Sbjct: 466 DECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSI 525

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           D+A   F++M   G  PN   YT L+    + GR  +A   L EM + G++
Sbjct: 526 DEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMS 576



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 110/240 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V LY +L++ LC ++    A +L+ +M   G  P+   Y  +++A   + K  EA   LQ
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQ 498

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M D GF P +     LV GL  AG ++ A    NKM+  G   +++ + +L++ +CK+G
Sbjct: 499 KMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG 558

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  V +   +   G+  D      L+    K G + +AF L   ++  G +     Y 
Sbjct: 559 RLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYT 618

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             + G        +A    SEM   G  P+  VY  LI  C + G   EAA    EM  +
Sbjct: 619 CFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEMESL 678



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 105/222 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A  + NK      +   ++Y +++ A  + +    A AL+++M+  GF P+  TY  
Sbjct: 455 LDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCA 514

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           LV+  C +G + EA     +M D G  P V+    LV GL   G L+ A  ++++MI +G
Sbjct: 515 LVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKG 574

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD     SL++   K G ++    +   +   GL  D+  Y   +       MI EA 
Sbjct: 575 MSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAR 634

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            +L  ++E+G  P   +Y  +I    + G  ++A    +EM+
Sbjct: 635 EVLSEMIENGITPDAVVYNCLINKCQKLGNMEEAAILQNEME 676



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 69/156 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +++   K G +D A+  FNK      +  V  Y +L+  LC+      A  L+  M
Sbjct: 511 TYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEM 570

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG   D      L++     G +++A     +M + G    + G    V G  N   +
Sbjct: 571 IDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMI 630

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + A++++++MI+ G   D   +N LI    K G +E
Sbjct: 631 QEAREVLSEMIENGITPDAVVYNCLINKCQKLGNME 666


>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 1430

 Score =  125 bits (313), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 39/331 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +KT++ M   N++    + S++I+ F K+  +D A+ +FN    F  +  +L+YN+L+ +
Sbjct: 415 FKTVKRMVFPNIT----SFSIVIDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDS 470

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTY------------------------------- 90
           LC+      +Y L+R M   G  P   TY                               
Sbjct: 471 LCKSNRLEKSYELLREMKELGIEPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPW 530

Query: 91  ----AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                +LV   C  G++ EA EFL  M+ +GF P +      + GL+N   ++ A ++  
Sbjct: 531 IKHTTLLVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFK 590

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            +   G   D+  FN LI  +CK        ++++ + K GL   V TY + I    K G
Sbjct: 591 DLWSHGHCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVTYNLFIDCWCKNG 650

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D+A   L  + ++   P    Y  ++ G  +  + DDA   F EM+  G PPN+  + 
Sbjct: 651 NVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFM 710

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            LI    +  R  EA  YL EM +  + P S
Sbjct: 711 ALIYGLCKCCRPTEALCYLREMQQKEMKPDS 741



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      A   +  M ++GF+PD  +Y+  +    +  ++  A +  +++   G
Sbjct: 537 LVKELCDHGRVIEACEFLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKIFKDLWSHG 596

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   ++L++GL        A+ + ++++K+G    + T+N  I+  CK+G V+  +
Sbjct: 597 HCPDVVCFNVLIRGLCKVNRFTEAEDLFHELVKRGLSPSVVTYNLFIDCWCKNGNVDKAM 656

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
              + + K      V TY  L+    K    D+A  L   + ++G  P    +  +I G+
Sbjct: 657 AHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYGL 716

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL--TP 295
            +  +  +A C+  EM+ K   P+  +Y  L++          A     EM ++G    P
Sbjct: 717 CKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSAFEIFREMVDLGFFPKP 776

Query: 296 ISRCFDLVTDG-LKNCGKHDLAEKIELL 322
           + + +  V D  LK C     +  I++L
Sbjct: 777 LDKNYPTVVDAILKFCKDDRTSSGIQVL 804



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 138/336 (41%), Gaps = 21/336 (6%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC-QQCVLLYNSLLFALC 63
           +E M    + +S +T  ++I  F K   VD A+++F+K    +     V LY+ L+  LC
Sbjct: 253 VERMGECGMRLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLC 312

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           + K    A +L   M   G  PD      L++ +  S  M           ++     V 
Sbjct: 313 KNKDTDRAISLFSEMKEFGVRPDIGILTKLISCFSDSKSMVSRLLEEIPEGEEDEQTLVL 372

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--------------------LETFNSL 163
             + L+   +N G ++ A +++  MI+     D                    + +F+ +
Sbjct: 373 IYNALLTCYVNDGLMDEAYRLIRMMIQSKSSTDSDENRMDVFFKTVKRMVFPNITSFSIV 432

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+   K+ +++  + ++  + +      +  Y  LI ++ K+  +++++ LL  + E G 
Sbjct: 433 IDGFLKNDQLDLALSLFNDMRRFVDKPTILIYNNLIDSLCKSNRLEKSYELLREMKELGI 492

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    Y  I   + +R     A     EM   GH P     T+L+      GR +EA  
Sbjct: 493 EPTHFTYNSIYGCLCKRKDVSAACVMLKEMGSCGHGPWIKHTTLLVKELCDHGRVIEACE 552

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +L  MT+ G  P    +     GL N  + D A KI
Sbjct: 553 FLDNMTQQGFLPDIVSYSAAIGGLVNIQEVDHAMKI 588



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 46/263 (17%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-----YNSLLFALCEVKLF 68
           S +P   S  +   G   LV  A ++F++ +    ++ + +     +N+LL  + +  L 
Sbjct: 122 SFTPGAFSFFLRCLGNLRLVHQANQLFDEMS----RKGLFVPDRYSHNTLLEVISKCGLV 177

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
                 +  M   G+  DK T   ++  +C++ +  +A    +EM +KG+          
Sbjct: 178 DLMEMRLNEMKGFGWEFDKYTLTPVIVTYCNAQRFDQALSVYKEMEEKGW---------- 227

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
                         + V  M+   F               K GEV+   E+   + + G+
Sbjct: 228 ------------VDERVCSMMALCF--------------SKLGEVDKAFELVERMGECGM 261

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
                T+ +LI    K   +D+A +L   +  ED   P  SLY  +I G+ +    D A 
Sbjct: 262 RLSEKTFCVLIHGFVKESRVDKALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAI 321

Query: 248 CFFSEMKIKGHPPNRPVYTMLIT 270
             FSEMK  G  P+  + T LI+
Sbjct: 322 SLFSEMKEFGVRPDIGILTKLIS 344



 Score = 45.8 bits (107), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K    D+A+ +F +     C    + + +L++ LC+      A   +R M
Sbjct: 673 TYTTLVDGFCKEERPDDAILLFKEMEKNGCPPNQITFMALIYGLCKCCRPTEALCYLREM 732

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            +K   PD   Y  L++A+ S   +  A E  +EM D GF P
Sbjct: 733 QQKEMKPDSFIYVALLSAYLSDLNLTSAFEIFREMVDLGFFP 774


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 142 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAML 201

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G +PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 202 ASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 261

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 262 FAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 321

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     YA +I G+ + G+  DA     EM   G  
Sbjct: 322 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLK 381

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 382 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 141 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAM 200

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G + +  TF +LI+  CK+G V
Sbjct: 201 LASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRV 260

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +F +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 261 DFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 320

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   Y  LI+   + GR V+A   L EM  +GL
Sbjct: 321 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGL 380

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+ +  +LL+
Sbjct: 381 KPDTGTYTMIINEF--CKKGDVWKGSKLLK 408



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 135/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 72  FSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 131

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G+L+
Sbjct: 132 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLD 191

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G + D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 192 EGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 251

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 252 DGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 311

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 312 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKM 371

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 372 LREMLSVGLK 381



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + +RM
Sbjct: 211 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRM 270

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 271 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 330

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 331 DTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 390

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  +GH P    Y  ++ G
Sbjct: 391 INEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  +G +R+A E  +   +     P      +++ L+   Y +      
Sbjct: 68  DIYVFSGLITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFY 127

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + 
Sbjct: 128 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 187

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   ++  G  P    Y+ +I G+ +  + DDA   F EM +KG  PN   +
Sbjct: 188 GHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 247

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A      M    L P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 248 TTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLIDEM 305

Query: 325 SLRSV 329
           S++ +
Sbjct: 306 SMKGL 310


>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W+ ++ M    L  + +T +++I   G+ GL  + VE F K   FN +     YN++L 
Sbjct: 175 LWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKSLVERFIKSKTFNFRPFKHSYNAILH 234

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  +  +     + ++++  GF  D  TY I++ A    GK+ +    L EM   GF+P
Sbjct: 235 GLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSP 294

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + G    +  F +LI+ + ++G ++ C   +
Sbjct: 295 DFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFF 354

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     AG I++A ++   ++     P    Y  II+G+   
Sbjct: 355 DEMIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYMISREQVPNVFTYNSIIQGLCMA 414

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD+A     EMK KG  PN  VY  L +     G+  +A   + +MTE G
Sbjct: 415 GKFDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMTEKG 466



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 35/306 (11%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  Y+ ++    E + F   + L+  M+ KG     RT+ IL+     +G  +   E
Sbjct: 153 QHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGLPATARTFNILIRTCGEAGLAKSLVE 212

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
              +     F P     + ++ GLL     +  + +  +++  GF  D+ T+N ++    
Sbjct: 213 RFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDGFSSDILTYNIVMYAKY 272

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G+++    +   + + G   D  T+ IL+  + K      A  LL+++ E G +P   
Sbjct: 273 RLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVL 332

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-----------------M 271
            +  +I G+ R G  D    FF EM   G  P+   YT++IT                 M
Sbjct: 333 HFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYM 392

Query: 272 CGR------------------GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             R                   G+F EA + L EM   G +P S  ++ +   L+N GK 
Sbjct: 393 ISREQVPNVFTYNSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKT 452

Query: 314 DLAEKI 319
             A ++
Sbjct: 453 ADAHEV 458



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 41/238 (17%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++G+      Y +++N +    + +     + EM +KG     R  ++L++    AG   
Sbjct: 149 QEGYQHTVNAYHLVMNIYAECEEFKALWRLVDEMVEKGLPATARTFNILIRTCGEAGL-- 206

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            AK +V + IK     F     ++N+++  +    + +    +Y  +   G  +D+ TY 
Sbjct: 207 -AKSLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQLLLDGFSSDILTYN 265

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I++ A  + G +D+  RLL                                    EM   
Sbjct: 266 IVMYAKYRLGKLDQFHRLL-----------------------------------DEMGRN 290

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           G  P+   + +L+ + G+G + + A N L  M EMG+ P    F  + DGL   G  D
Sbjct: 291 GFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLD 348



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 77/177 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++++   GK      A+ + N       +  VL + +L+  L               
Sbjct: 297 HTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFFDE 356

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI+ G +PD   Y +++  +  +G++ +A +  Q M  +   P V   + ++QGL  AG 
Sbjct: 357 MIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYMISREQVPNVFTYNSIIQGLCMAGK 416

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            + A  M+ +M  +G   +   +N+L   +  +G+     E+   + + G  AD+ +
Sbjct: 417 FDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMTEKGKYADIHS 473



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 2/149 (1%)

Query: 13  LSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + + P  L  + +I+   + G +D     F++     C   V+ Y  ++           
Sbjct: 325 MGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIEK 384

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  + + MI +  VP+  TY  ++   C +GK  EA   L+EM  KG +P     + L  
Sbjct: 385 ALKMYQYMISREQVPNVFTYNSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVYNTLAS 444

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            L NAG    A +++ +M ++G   D+ +
Sbjct: 445 CLRNAGKTADAHEVIRQMTEKGKYADIHS 473



 Score = 44.3 bits (103), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ A++++    +      V  YNS++  LC    F  A ++++ M  KG  P+   Y
Sbjct: 380 GEIEKALKMYQYMISREQVPNVFTYNSIIQGLCMAGKFDEACSMLKEMKTKGCSPNSFVY 439

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
             L +   ++GK  +A E +++M++KG    +  R
Sbjct: 440 NTLASCLRNAGKTADAHEVIRQMTEKGKYADIHSR 474


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 119/252 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  Y+ L+  LC+      A  L   M  +G VP+  T+  L+N  C +G+     E  Q
Sbjct: 295 VFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  KG  P V   + L+ GL   G L  AK++V +M ++G   D  T+  LI+  CK G
Sbjct: 355 QMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEG 414

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E  +E+   + K G+  D   +  LI    + G + EA R L  ++E G KP  + Y 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  ++G     F    EM+  GH P    Y +L+    + G+   A   L  M  +
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 292 GLTPISRCFDLV 303
           G+ P    ++++
Sbjct: 535 GVVPDDITYNIL 546



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 2/318 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            L++ +NL +   +   + +   K  L   A   + +         V  +N L+  LC+ 
Sbjct: 179 RLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKE 238

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A  L   + ++G  P   ++  L+N +C SG + +     + M +    P V   
Sbjct: 239 HKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTY 298

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ GL   G L+ A ++  +M  +G V +  TF +LI   C +G  +  +E+Y  + +
Sbjct: 299 SVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR 358

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  + K G + EA +L+  + + G KP    Y  +I G  + G  + 
Sbjct: 359 KGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLES 418

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     EM  +G   +   +T LI+   R G+ +EA   L EM E G+ P    + +V  
Sbjct: 419 ALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIH 478

Query: 306 GLKNCGKHDLAEKIELLE 323
           G   C K D+    +LL+
Sbjct: 479 GF--CKKGDVKTGFKLLK 494



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 134/293 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++    K   ++ A  +F +      +  V+ +N+L+   C+       + L R M+
Sbjct: 228 FNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMM 287

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                PD  TY++L+N  C  G++ +A +   EM D+G  P       L+ G    G  +
Sbjct: 288 ENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRAD 347

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++  +M+++G   D+ T+N+LI  +CK G++    ++   + + GL  D  TY +LI
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ A  +   +V++G +     +  +I G  R GQ  +A     EM   G  
Sbjct: 408 DGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK 467

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           P+   YTM+I    + G        L EM   G  P    ++++ +GL   G+
Sbjct: 468 PDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 143/354 (40%), Gaps = 39/354 (11%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-YNSLLFALC 63
           I+L+     S+SP +L    +          ++  +   T F C   +L    SLL  + 
Sbjct: 71  IDLINLNPHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVV 130

Query: 64  EVKLFHGAYALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             K  + A ++   ++  +G       +++L+NA+  SG   +A +  + +       P 
Sbjct: 131 SRKGKNSASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPF 190

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L   L+       A     +++  G+  D+  FN L+  +CK  ++     ++  
Sbjct: 191 HSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGE 250

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K GL   V ++  LI    K+G +D+ FRL   ++E+   P    Y+ +I G+ + GQ
Sbjct: 251 IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQ 310

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT---MCGRG------------------------ 275
            DDA   F EM  +G  PN   +T LI    + GR                         
Sbjct: 311 LDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNT 370

Query: 276 --------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                   G   EA   ++EMT+ GL P    + ++ DG   C + DL   +E+
Sbjct: 371 LINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC--CKEGDLESALEI 422



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 35/222 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G  D  +E++ +      +  V+ YN+L+  LC+V     A  L+  M
Sbjct: 332 TFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEM 391

Query: 79  IRKGFVPDKRTYAILVNA-----------------------------------WCSSGKM 103
            ++G  PDK TY +L++                                    +C  G++
Sbjct: 392 TQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQV 451

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            EA+  L+EM + G  P      +++ G    G +++  +++ +M   G V  + T+N L
Sbjct: 452 IEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVL 511

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +  +CK G+++    +  ++  LG+  D  TY IL+    +A
Sbjct: 512 LNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQA 553



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    +     T +++I  F K G V    ++  +         V+ YN LL  L
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAIL----VNAWCSSG 101
           C+      A  L+  M+  G VPD  TY IL    + AW   G
Sbjct: 516 CKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWKQGG 558


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 151/313 (48%), Gaps = 3/313 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   + P+   ++I  F    +V  AVEV ++   +  +    ++  LL
Sbjct: 153 VWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLL 212

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A  +   M R+   P+ R +  L+  WC  GK+ EA+E L +M + G  
Sbjct: 213 DALCKNGSVKDASKVFEDM-REKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLE 271

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVE 178
           P +     L+ G  +AG +  A  ++N M K+G+  +   +  LI+ +C++ + ++  + 
Sbjct: 272 PDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMR 331

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  + + G  AD+ TY  LI    K GMID+ + +L ++ + G  P    Y  I+    
Sbjct: 332 VFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHE 391

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++ QF++      +MK  G  P+  +Y ++I +        EA     EM   GL+P + 
Sbjct: 392 KKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGAD 451

Query: 299 CFDLVTDGLKNCG 311
            F ++ +G  + G
Sbjct: 452 MFVIMINGFTSQG 464



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ Y       T + +I  F K G++D    V +           + Y  +L A  + + 
Sbjct: 336 MERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQ 395

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     LI +M + G  PD   Y +++   C+  +++EA     EM   G +P      +
Sbjct: 396 FEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVI 455

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--TFNSLIETICKSGEVEF------CVEM 179
           ++ G  + GYL  A     +M+ +G     +  T  SL+ T+ +  ++E       C+  
Sbjct: 456 MINGFTSQGYLIEACSHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKLEMAKDVWSCISN 515

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             S C+L    +VS + I I A+   G + EA     +++E    P P+ Y  ++KG+
Sbjct: 516 KTSSCEL----NVSAWTIWIHALFAKGHVKEACSYCLDMMEMDLMPQPNTYVKLMKGL 569



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +LI   + A M+ +A  +L  + + G +P   ++  ++  + + G   DA   F +M+ K
Sbjct: 175 VLIRRFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREK 234

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PPN   +T L+    R G+ +EA   LV+M E GL P    F  +  G  + GK  +A
Sbjct: 235 -IPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGK--MA 291

Query: 317 EKIELL 322
           +  +LL
Sbjct: 292 DAYDLL 297


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 145/301 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+   K   VD A  V         +  V+ YN+++  LC+ +    A  +++ M
Sbjct: 236 TYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG  PD  TY  +++  C +  +  A   LQ M DK   P ++  + L+ G L+ G  
Sbjct: 296 IDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEW 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   + + +M  +G   D+ T++ L++ +CK+G+     +++Y + + G+  +V+ Y IL
Sbjct: 356 KEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGIL 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   +  G I +   LL  +V +G  P   ++  ++    ++   D+A   FS M   G 
Sbjct: 416 LHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGL 475

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +LI    + GR  +A     +M   G+TP S  F+ +  GL    + + AE+
Sbjct: 476 SPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEE 535

Query: 319 I 319
           +
Sbjct: 536 L 536



 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 138/298 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K   VD A  V         +  V+ Y++++  LC+ +    A  +++ M
Sbjct: 201 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG  PD  TY  +++  C +  +  A+  LQ M DKG  P V   + ++ GL  A  +
Sbjct: 261 IDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAV 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++  MI +    D++T+N LI     +GE +  V     +   GL  DV TY +L
Sbjct: 321 DRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLL 380

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G   EA ++ + ++  G KP  ++Y  ++ G   RG   D       M   G 
Sbjct: 381 LDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGI 440

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN  ++ +++    +     EA +    M++ GL+P    + ++ D L   G+ D A
Sbjct: 441 SPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDA 498



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + LS    T  ++I+   K G VD+AV  FN+          +++NSL++ LC V  
Sbjct: 470 MSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDR 529

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  L   M  +G  P+   +  ++   C+ G++  AQ  +  M   G  P V   + 
Sbjct: 530 WEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNT 589

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG  + A Q+++ M+  G   DL ++++L+   CK+G ++    ++  + + G
Sbjct: 590 LIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKG 649

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +     TY  ++  +       EA  L  N+++ G +     Y  I+ G+ +    D+AF
Sbjct: 650 VTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAF 709

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F  +  K   PN   +T++I +  +GGR  +A +    +   GL P
Sbjct: 710 KIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVP 757



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 2/291 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +++  +   G + +  ++ +   A        ++N +L A  +  +   A  +  RM + 
Sbjct: 414 ILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQH 473

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  TY IL++A C  G++ +A     +M + G  P     + LV GL      E A
Sbjct: 474 GLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKA 533

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           +++  +M  QG   ++  FN+++  +C  G+V     +  S+ ++G+  +V +Y  LI  
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
              AG  DEA +LL  +V  G KP    Y  +++G  + G+ D+A+C F EM  KG  P 
Sbjct: 594 HCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPG 653

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNC 310
              Y+ ++       RF EA    + M + G       ++++ +GL   NC
Sbjct: 654 AVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNC 704



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 139/305 (45%), Gaps = 4/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRR 77
           T S++   F + G +++    F        +   ++ N LL  LC+ K    A   L+RR
Sbjct: 92  TYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRR 151

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLN 134
           M   G +P+  +   L+   C+  ++ EA E L  M++ G     P V   + ++ GL  
Sbjct: 152 MPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK 211

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           A  ++ A+ ++  MI +G  LD+ T++++I+ +CK+  V+    +   +   G+  DV T
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVT 271

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  +I  + KA  +D A  +L ++++ G KP    Y  II G+ +    D A      M 
Sbjct: 272 YNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMI 331

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            K   P+   Y  LI      G + E    L EM   GL P    + L+ D L   GK  
Sbjct: 332 DKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCT 391

Query: 315 LAEKI 319
            A KI
Sbjct: 392 EARKI 396



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 2/244 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+   C       A  L+  M+  G  PD  +Y  L+  +C +G++  A    +
Sbjct: 584 VISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFR 643

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P       ++QGL +      AK++   MIK G   D+ T+N ++  +CK+ 
Sbjct: 644 EMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTN 703

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+   +++ S+C   L  ++ T+ I+I  + K G   +A  L  ++   G  P    Y 
Sbjct: 704 CVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYC 763

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTE 290
            ++K + + G  D+    F  M+  G  P+  +   +I ++ GR G  + A  YL ++ E
Sbjct: 764 IMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGR-GEIMRAGAYLSKIDE 822

Query: 291 MGLT 294
           M  +
Sbjct: 823 MNFS 826



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 151/342 (44%), Gaps = 39/342 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K   VD A  V         +  V+ YN+++  LC+ +    A  +++ M
Sbjct: 271 TYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHM 330

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   PD +TY  L++ + S+G+ +E    L+EM  +G +P V    LL+  L   G  
Sbjct: 331 IDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKC 390

Query: 139 ESAKQMVNKMIKQGF-------------------------VLDLET----------FNSL 163
             A+++   MI++G                          +LDL            FN +
Sbjct: 391 TEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIV 450

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +    K   ++  + ++  + + GL  DV TY ILI A+ K G +D+A    + ++ DG 
Sbjct: 451 LCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGV 510

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAA 282
            P   ++  ++ G+    +++ A   F EM  +G  PN   + T++  +C  G   V A 
Sbjct: 511 TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMV-AQ 569

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             +  M  +G+ P    ++ +  G    G+ D  E  +LL+V
Sbjct: 570 RLIDSMERVGVRPNVISYNTLIGGHCLAGRTD--EAAQLLDV 609



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 112/244 (45%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  D A ++ +   +   +  ++ Y++LL   C+      AY L R M+RKG  P   TY
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + ++     + +  EA+E    M   G    +   ++++ GL     ++ A ++   +  
Sbjct: 658 STILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCS 717

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    ++ TF  +I+ + K G  +  ++++ S+   GL  +V TY I++  + + G++DE
Sbjct: 718 KDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDE 777

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
              L   + + G  P   +   II+ +  RG+   A  + S++            ++LI+
Sbjct: 778 FDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEASTTSLLIS 837

Query: 271 MCGR 274
           +  R
Sbjct: 838 LFSR 841



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 136/312 (43%), Gaps = 12/312 (3%)

Query: 20  LSLIIEEFGKHGL--VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG---AYAL 74
           L  +I +  + G   +D+A+++F++         V  +N LL  +   +       A +L
Sbjct: 15  LERVIADRARSGSLGIDDALKLFDELLPHARPASVRAFNHLLNVVARARCSSTSELAVSL 74

Query: 75  IRRMIR---KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             RM R       PD  TY+IL   +C  G++         +   G+       + L+ G
Sbjct: 75  FNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNG 134

Query: 132 LLNAGYLESAKQ-MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG--- 187
           L +A  ++ A   ++ +M + G + ++ + N+L++ +C    VE  +E+ +++ + G   
Sbjct: 135 LCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGN 194

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V TY  +I  + KA  +D A  +L ++++ G K     Y+ II G+ +    D A 
Sbjct: 195 CTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAE 254

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M  KG  P+   Y  +I    +      A   L  M + G+ P    ++ + DGL
Sbjct: 255 GVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 314

Query: 308 KNCGKHDLAEKI 319
                 D A+ +
Sbjct: 315 CKAQAVDRADGV 326


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 145/304 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    +    T + +I+  GK GL+D  + +F +    +C   V+ YN+L+   C+ + 
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 340

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+  +  M   G  P+  TY+  ++A+C  G ++EA +F  +M      P       
Sbjct: 341 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 400

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AG L  A ++V ++++ G  L++ T+ +L++ +C+ G ++   E++ ++   G
Sbjct: 401 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 460

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY  L+    KA  ++ A  +L  + E   KP   LY  I+ G+    + ++A 
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 520

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               E+K  G   N  +YT L+    + G+  EA   L EM ++GL      +  + DGL
Sbjct: 521 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGL 580

Query: 308 KNCG 311
              G
Sbjct: 581 CKSG 584



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+ +  T + +I+   K G +  A+++  +      +  V+ Y +LL  LCE   
Sbjct: 386 MRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR 445

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  + R M+  G  P++ TY  LV+ +  + +M  A++ L+EM +K   P +     
Sbjct: 446 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 505

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL N   LE AK ++ ++ + G   +   + +L++   KSG+    + +   +  LG
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L A   TY  LI  + K+G++ EA      + E G +P  ++Y  ++ G+ +   F+ A 
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  KG  P++  YT LI    + G   EA N    M E+G+      +  +  GL
Sbjct: 626 KLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGL 685

Query: 308 KNCGK 312
            + G+
Sbjct: 686 SHSGQ 690



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 139/314 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  +      T + +I  F K   +  A E  ++  A   +  V+ Y++ + A C+ 
Sbjct: 314 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKE 373

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A      M R    P++ TY  L++A C +G + EA + ++E+   G    V   
Sbjct: 374 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 433

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL   G ++ A+++   M+  G   + ET+ +L+    K+ E+E+  ++   + +
Sbjct: 434 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 493

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D+  Y  ++  +     ++EA  L+  + E G      +Y  ++   F+ GQ  +
Sbjct: 494 KCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATE 553

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     EM   G       Y  LI    + G   EA ++   M+E+GL P    +  + D
Sbjct: 554 ALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVD 613

Query: 306 GLKNCGKHDLAEKI 319
           GL      ++A+K+
Sbjct: 614 GLCKNNCFEVAKKL 627



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 135/302 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + +   P++ + ++    K G  D + + F    A   ++ V  YN ++  LC+   
Sbjct: 211 MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 270

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A +L  +M   GF PD  TY  L++     G + E     ++M D   +P V   + 
Sbjct: 271 LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 330

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        +  A + +++M   G   ++ T+++ I+  CK G ++  ++ +  + ++ 
Sbjct: 331 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 390

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  KAG + EA +L+  +++ G K     Y  ++ G+   G+  +A 
Sbjct: 391 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 450

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN+  YT L+    +      A + L EM E  + P    +  +  GL
Sbjct: 451 EVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGL 510

Query: 308 KN 309
            N
Sbjct: 511 CN 512



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 122/266 (45%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++++L  AL E+ +   A     +M +    P  R+   L++     G+   +++F ++M
Sbjct: 187 VFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDM 246

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G    V   ++++  L   G LE A+ +  +M + GF  D+ T+NSLI+   K G +
Sbjct: 247 GAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLL 306

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           + C+ ++  +       DV TY  LI    K   + +AF  LH +  +G KP    Y+  
Sbjct: 307 DECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTF 366

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + G   +A  FF +M+     PN   YT LI    + G   EA   + E+ + G+
Sbjct: 367 IDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGI 426

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
                 +  + DGL   G+   AE++
Sbjct: 427 KLNVVTYTALLDGLCEEGRMKEAEEV 452



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A  +F +         ++ YNSL+    ++ L      +  +M
Sbjct: 257 TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD  TY  L+N +C   +M +A EFL EM   G  P V      +      G L
Sbjct: 317 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +    M +     +  T+ SLI+  CK+G +   +++   + + G+  +V TY  L
Sbjct: 377 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + + G + EA  +   ++  G  P    Y  ++ G  +  + + A     EMK K  
Sbjct: 437 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 496

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+  +Y T+L  +C    R  EA   + E+ E G+   +  +  + D     G+    E
Sbjct: 497 KPDLLLYGTILWGLCNE-SRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA--TE 553

Query: 318 KIELLE 323
            + LLE
Sbjct: 554 ALTLLE 559



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 107/245 (43%), Gaps = 2/245 (0%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VP    +  L +A    G + EA E   +M      P  R  + L+  L   G  + +++
Sbjct: 182 VPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRK 241

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
               M   G    + T+N +I+ +CK G++E    ++  + + G   D+ TY  LI    
Sbjct: 242 FFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHG 301

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G++DE   +   + +    P    Y  +I    +  +   AF F  EMK  G  PN  
Sbjct: 302 KLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVV 361

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            Y+  I    + G   EA  + V+M  + LTP    +  + D   NC   +LAE ++L+E
Sbjct: 362 TYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDA--NCKAGNLAEALKLVE 419

Query: 324 VSLRS 328
             L++
Sbjct: 420 EILQA 424



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 110/236 (46%), Gaps = 16/236 (6%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L+I E  + G+  NAV                +Y +L+ A  +      A  L+  M+  
Sbjct: 521 LLIGEIKESGINTNAV----------------IYTTLMDAYFKSGQATEALTLLEEMLDL 564

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G +  + TY  L++  C SG ++EA      MS+ G  P V     LV GL      E A
Sbjct: 565 GLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVA 624

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           K++ ++M+ +G + D   + +LI+   K G ++  + +   + ++G+  D+  Y  LI  
Sbjct: 625 KKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWG 684

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +S +G + +A  LL  ++  G  P   +Y  +IK  +  G+ D+A    +EM  +G
Sbjct: 685 LSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 2/199 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L  +  T   +I+   K GLV  A+  F + +    Q  V +Y +L+  LC+
Sbjct: 558 LEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCK 617

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  A  L   M+ KG +PDK  Y  L++     G ++EA      M + G    +  
Sbjct: 618 NNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHA 677

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL ++G ++ A+ ++++MI +G + D   +  LI+     G+V+  +E+   + 
Sbjct: 678 YTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMA 737

Query: 185 KLGLCADVSTYKILIPAVS 203
           K G+   +S +   +P+V 
Sbjct: 738 KRGMITGLSDHA--VPSVQ 754



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 92/215 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   ++ +    + +++ + K G    A+ +  +          + Y +L+  LC+  L
Sbjct: 526 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGL 585

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A     RM   G  P+   Y  LV+  C +     A++   EM DKG  P       
Sbjct: 586 VQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTA 645

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G +  G L+ A  + ++MI+ G  LDL  + +LI  +  SG+V+    +   +   G
Sbjct: 646 LIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +  D   Y  LI      G +DEA  L + + + G
Sbjct: 706 VLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 740


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 149/341 (43%), Gaps = 38/341 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  + + G +  A  +F++  +      ++ YN+LL  LC       A  L   MI +G
Sbjct: 380 LIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG 439

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFL-------------------------------- 110
             PD  TY ILVN  C  G +  AQEF                                 
Sbjct: 440 IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAF 499

Query: 111 ---QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +EM  KGF P +   +++V GL   G LE A +++ KM+  G + D  T+ S+I   
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            ++G +    E++Y +   GL   V TY +LI   +  G ++ AF     + E G  P  
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNV 619

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G+ +  + D A+ FF+EM  KG  PN+  YT+LI      G + EA +   +
Sbjct: 620 ITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQ 679

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           M + G+ P S     +   LK  GK    + +  LE  L S
Sbjct: 680 MLDRGVQPDSCTHSAL---LKQLGKDCKLQAVRQLESLLDS 717



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 37/328 (11%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR------------ 76
           K G + +A++  +   A N    V+ YN+L++  C +     A+ L              
Sbjct: 351 KLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIV 410

Query: 77  -----------------------RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
                                   MI +G  PD  TY ILVN  C  G +  AQEF  EM
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEM 470

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G           + G L  G    A  +  +M+ +GF  DL  +N +++ +CK G +
Sbjct: 471 LHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNL 530

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   E+   +   G+  D  TY  +I A  + G + +   + + ++  G  P    Y  +
Sbjct: 531 EEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVL 590

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G   +G+ + AF +FSEM+ KG  PN   Y  LI    +  R  +A N+  EM E G+
Sbjct: 591 IHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGI 650

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            P    + ++ +  +NC   +  E + L
Sbjct: 651 FPNKYSYTILIN--ENCNMGNWQEALSL 676



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 141/346 (40%), Gaps = 36/346 (10%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K   L VS  T + +I  +   G++  A+ +  +         V  YNS ++ LC++
Sbjct: 294 EMLKT-GLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKL 352

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A   +  M+    +PD  +Y  L+  +C  G + +A     E+      P +   
Sbjct: 353 GRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTY 412

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYY 181
           + L+ GL   G LE A+Q+  +MI +G   D+ T+  L+   CK G +    EF  EM +
Sbjct: 413 NTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLH 472

Query: 182 SVCKL-------------------------------GLCADVSTYKILIPAVSKAGMIDE 210
              +L                               G   D+  Y +++  + K G ++E
Sbjct: 473 EGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEE 532

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LL  +V DG  P    Y  II      G+       F EM  KG  P+   YT+LI 
Sbjct: 533 ASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIH 592

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                GR   A  Y  EM E G+ P    ++ + +GL    + D A
Sbjct: 593 GHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 132/304 (43%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS + L L+I  + K  +V+  + VF+K         V   N +L  L +  L   A  +
Sbjct: 162 VSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEV 221

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R M   G  P   TY  L++++C  GK+++  + L EM  +G  P     ++L+ GL  
Sbjct: 222 YRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSK 281

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G  E AK ++ +M+K G  +   T+N LI      G +   + +   +   G    V+T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y   I  + K G + +A + L +++ +   P    Y  +I G  R G    AF  F E++
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
                P    Y  L+    R G    A    VEM   G+ P    + ++ +G    G   
Sbjct: 402 SIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLS 461

Query: 315 LAEK 318
           +A++
Sbjct: 462 MAQE 465



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           L+  AVEV+     F  +  ++ YN+LL + C+         L+  M R+G  P+  TY 
Sbjct: 214 LMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYN 273

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +L+N     G+  +A+  + EM   G        + L+ G  N G L  A  +  +M+ +
Sbjct: 274 VLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK 333

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G    + T+NS I  +CK G +   ++    +    L  DV +Y  LI    + G + +A
Sbjct: 334 GASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKA 393

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           F L   L      P    Y  ++ G+ R+G+ + A     EM  +G  P+   YT+L+  
Sbjct: 394 FLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNG 453

Query: 272 CGRGGRFVEAANYLVEMTEMGL 293
             + G    A  +  EM   GL
Sbjct: 454 SCKMGSLSMAQEFFDEMLHEGL 475



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 138/333 (41%), Gaps = 38/333 (11%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K +E+   M  + +  +  T + +++ + K G V   +++ ++     C    + YN 
Sbjct: 215 MSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  L +   F  A  LI  M++ G      TY  L+  + + G + EA    +EM  KG
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG 334

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--------------------- 156
            +P V   +  + GL   G +  A Q ++ M+    + D                     
Sbjct: 335 ASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAF 394

Query: 157 --------------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                         + T+N+L++ +C+ GE+E   ++   +   G+  D+ TY IL+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +  A      ++ +G +     YA  I G  + G    AF    EM  KG PP+ 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +Y +++    + G   EA+  L +M   G+ P
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIP 547



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ S  T +++I      G ++ A   F++         V+ YNSL+  LC+V+    AY
Sbjct: 580 LTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAY 639

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
                M+ KG  P+K +Y IL+N  C+ G  +EA    ++M D+G  P       L++ L
Sbjct: 640 NFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQL 699

Query: 133 LNAGYLESAKQM 144
                L++ +Q+
Sbjct: 700 GKDCKLQAVRQL 711



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 1/200 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++++   K G ++ A E+  K  +       + Y S++ A  E         +   M+ 
Sbjct: 518 NVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLS 577

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P   TY +L++     G++  A  +  EM +KG  P V   + L+ GL     ++ 
Sbjct: 578 KGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQ 637

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A     +M+++G   +  ++  LI   C  G  +  + +Y  +   G+  D  T+  L+ 
Sbjct: 638 AYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697

Query: 201 AVSKAGMIDEAFRLLHNLVE 220
            + K   + +A R L +L++
Sbjct: 698 QLGKDCKL-QAVRQLESLLD 716



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    ++G +    E+F +  +      V+ Y  L+           A+     M
Sbjct: 551 TYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEM 610

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +P+  TY  L+N  C   +M +A  F  EM +KG  P      +L+    N G  
Sbjct: 611 QEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNW 670

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           + A  +  +M+ +G   D  T ++L++ + K
Sbjct: 671 QEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 142/307 (46%), Gaps = 7/307 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G V +A   F K   F  +  V+ Y++++  LC          L+  M
Sbjct: 3   TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY  LVNA    G+ +EA   L+ M+  G  P +    L+++GL   G +
Sbjct: 63  AGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEI 122

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A ++V++M+ +GFV D+E    L+  +C+ G V+     +  V  +G   D  TY  +
Sbjct: 123 EAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTM 182

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + KAG ++ A  +L  L E    P    +   + G+ + G    A+ FF  M   G 
Sbjct: 183 VDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGV 242

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM-TEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PN   Y  LI    + G+   A   L +  ++ G+      F  +  GL  C  H L E
Sbjct: 243 SPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFA----FSSLLHGL--CQAHRLEE 296

Query: 318 KIELLEV 324
            I+LL+ 
Sbjct: 297 AIQLLKA 303



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 146/318 (45%), Gaps = 3/318 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC-QQCVLLYNSLLFA 61
           + ++ M     + +  T S I++   K G V  A+  F K          V+ Y++L+  
Sbjct: 669 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 728

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      AY  + RMIR G +PD  T++IL+N  C +G++    E    M+++G    
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKAD 788

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + ++      G   +A  ++ +M   G   +  T   +I+ +C +  ++  V  ++
Sbjct: 789 IYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFH 848

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S+ +   C D  +Y  LI ++  +   ++A  LL  +V DG  P    Y  ++ G+F+ G
Sbjct: 849 SIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAG 906

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             + A     EM+ +GH P+   YT++I+   +  +   A +Y  EM    L P +  + 
Sbjct: 907 SPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYS 966

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + D      K D A K+
Sbjct: 967 SLIDAFCKADKVDDAWKL 984



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 125/265 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN L+  LC+      A+   R+ I+ GF P   TY+ +++  C   ++ +  + L+
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM+ +G  P     + LV  LL  G  + A  ++ +M   G   +L TF  +I+ +CK G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E+E    +   +   G   DV  + +L+ A+ + G +DEA+     ++  G  P    Y 
Sbjct: 121 EIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYN 180

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+++ G+ + A      +      P    +T+ +    + G    A  +   M + 
Sbjct: 181 TMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQT 240

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G++P +  +D + DGL   GK D+A
Sbjct: 241 GVSPNTVTYDALIDGLCKAGKLDIA 265



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 130/282 (46%), Gaps = 3/282 (1%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  ++ YN+L+  L +  +   A  L+  MI  G  PD  T+  +++  C   ++ +A 
Sbjct: 469 CRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAH 528

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +   ++G  P V     L+ GL     ++ A Q++ KM++ G   +  T++++++ +
Sbjct: 529 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 588

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G +E  V +   +   G   D  TY  LI    K   + EA  LL  ++E G  P  
Sbjct: 589 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSV 648

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +  G+ R G+FD+A      M  +G  PN   Y+ ++    + GR  EA  Y  +
Sbjct: 649 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 708

Query: 288 MT-EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           M  +  + P    +  + DGL   G+ D  E  E LE  +R+
Sbjct: 709 MARDEVVAPHVIAYSALIDGLCKAGRID--EAYEFLERMIRA 748



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 1/297 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G+V +A+ +            V+ +NS+L  LC+ +    A+ + +R 
Sbjct: 475 TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY+ L++      KM EA + L +M + G          +V GLL  G +
Sbjct: 535 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 594

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M   G + D  T+N+LI+   K   +   V +   + + G    V TY  L
Sbjct: 595 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 654

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKG 257
              + ++G  DEA  +L  +   G  P    Y+ I+ G+ + G+  +A  +F +M + + 
Sbjct: 655 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             P+   Y+ LI    + GR  EA  +L  M   G  P    F ++ +GL + G+ D
Sbjct: 715 VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRID 771



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 1/289 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    LS    T + +++   K   + +A  VF +     C+  V+ Y++L+  L +
Sbjct: 496 LEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSK 555

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+ +M+  G   +  TY+ +V+     G+M +A   L++M D G  P    
Sbjct: 556 MAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVT 615

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G      L  A  ++ +M++ GF   + T+ +L   +C+SG  +  VE+   + 
Sbjct: 616 YNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 675

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HKPFPSLYAPIIKGMFRRGQF 243
             G   +  TY  ++  + KAG + EA      +  D    P    Y+ +I G+ + G+ 
Sbjct: 676 ARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRI 735

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           D+A+ F   M   G  P+   +++LI      GR          M E G
Sbjct: 736 DEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERG 784



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 39/319 (12%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     ++ A+++     A  C   V+ +NSL+  LC+ +    A+ L   M   G  
Sbjct: 286 HGLCQAHRLEEAIQLLK---AMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCS 342

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMS-DKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            D  TY IL+   C   ++ EA   ++ M   +G +P V     L+QGL NAG +  A +
Sbjct: 343 ADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWE 402

Query: 144 MVNKMIK-QGFVLDLETFNSLIETICKSGE---VEFCVE--------------------- 178
           +  +M+  +G   +  T+  L+E +CK+G+   +E C E                     
Sbjct: 403 VYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVD 462

Query: 179 -MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   VC+  L     TY  L+  +SK+GM+ +A  LL  ++E G  P    +  ++ G+
Sbjct: 463 FLMVQVCRPTLV----TYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGL 518

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +  +  DA   F     +G  PN   Y+ LI    +  +  EA   L +M E+G    +
Sbjct: 519 CKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT 578

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  V DGL   G+ + A
Sbjct: 579 VTYSTVVDGLLKVGRMEDA 597



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 153/350 (43%), Gaps = 36/350 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M     + +  T + ++      G    A  +  +  A  C   ++ +  ++  L
Sbjct: 57  KLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGL 116

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A+ ++  M+ +GFVPD   + +L++A C  G++ EA  F Q++   GF P  
Sbjct: 117 CKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYY 181
              + +V GL  AG LE+A  MV +++ + F    + TF   ++ + K+G +    E + 
Sbjct: 177 VTYNTMVDGLYKAGRLEAAG-MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAF----------------RLLHNLVEDGHK- 224
           S+ + G+  +  TY  LI  + KAG +D A                  LLH L +  H+ 
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHGLCQ-AHRL 294

Query: 225 -------------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
                        P    +  ++ G+ +  + D+AF  F  MK  G   +   Y +L+  
Sbjct: 295 EEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKG 354

Query: 272 CGRGGRFVEAANY--LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             +  R  EA  +  L+  TE G +P    F  +  GL N G+ + A ++
Sbjct: 355 LCKLRRIPEAYRHVELMRRTE-GCSPNVVTFSTLIQGLCNAGRVNQAWEV 403



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 2    WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            +  +E MK + ++ +  T  ++I+    +  +D AV  F+     +C+   + YN+L+ +
Sbjct: 809  YALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPE-DCRD-EISYNTLITS 866

Query: 62   LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            L   +    A  L+R M+  G  PD   Y  +++    +G    A + LQEM  +G +P 
Sbjct: 867  LVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926

Query: 122  VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            +R   +++ GL  A  L  A     +M+++    D   ++SLI+  CK+ +V+   ++  
Sbjct: 927  LRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR 986

Query: 182  SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            S    G+   ++ Y  ++ ++ K    D+A  ++  +     +P   ++  +       G
Sbjct: 987  SS---GIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEG 1043

Query: 242  QFDDAFCFFSEMK 254
            + D+A    ++++
Sbjct: 1044 RVDEAVKLVNDLQ 1056


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 2/280 (0%)

Query: 16  SPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  +S   +I  F K G V  A  + N+      +  V+ YNS++ ALC+ +    A  
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++R+M+ KG  PD  TY  +++ +  SG  +E+ +  ++M+ KG  P +   +  +  L 
Sbjct: 321 VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLC 380

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A+++   M  +G + DL +++ L+      G       +++S+   G+ A+  
Sbjct: 381 KHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCH 440

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            + ILI A +K GM+DEA  +   +   G +P    Y+ +I    R G+  DA   FS+M
Sbjct: 441 CFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQM 500

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              G  PN  VY  LI      G  V+A   + EM   G+
Sbjct: 501 ISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGI 540



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 132/276 (47%), Gaps = 2/276 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ +N+++    +      A  LI  M++KG  PD  TY  +V+A C +  M +A+
Sbjct: 260 CSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAE 319

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M DKG  P       ++ G   +G+ + + +M  KM  +G +  + TFNS + ++
Sbjct: 320 LVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSL 379

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G  +   E++  +   G   D+ +Y IL+   +  G   +   L H++ + G     
Sbjct: 380 CKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANC 439

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  +I    +RG  D+A   F+EM+ +G  P+   Y+ LI+   R GR  +A     +
Sbjct: 440 HCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQ 499

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M  +GL P +  +  +  G   C   DL +  EL+ 
Sbjct: 500 MISIGLEPNTVVYHSLIHGF--CMHGDLVKAKELVS 533



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 144/303 (47%), Gaps = 2/303 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II      G V +A +VFN       +  ++ +NSL+   C V     A+ ++  M+
Sbjct: 548 FSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 607

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY  LV+ +C SGK+ +     +EM  K   P      +++ GL +AG   
Sbjct: 608 SVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTS 667

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +AK+M ++MI  G  +D++T+  L++ +C++   +  + +++ +  +    D++    +I
Sbjct: 668 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVI 727

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K    +EA  L   +   G  P  S Y  +I  + + G  ++A   FS M+  G  
Sbjct: 728 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCA 787

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+  +   +I M  + G  V+A  Y+ ++    ++  +    L+     + GKH   E+I
Sbjct: 788 PSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKH--REQI 845

Query: 320 ELL 322
           + L
Sbjct: 846 KFL 848



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 9/294 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           + S+++  +   G   +   +F    +K    NC      +N L+ A  +  +   A  +
Sbjct: 406 SYSILLHGYATEGRFADMNNLFHSMADKGIVANCH----CFNILISAHAKRGMMDEAMLV 461

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M  +G  PD  TY+ L++A+C  G++ +A E   +M   G  P       L+ G   
Sbjct: 462 FTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCM 521

Query: 135 AGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            G L  AK++V++M+ +G    ++  F+S+I ++C  G V    +++  V  +G    + 
Sbjct: 522 HGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIV 581

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+  LI      G +++AF +L  +V  G +P    Y  ++ G  + G+ DD    F EM
Sbjct: 582 TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREM 641

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             K   P    Y++++      GR   A     EM + G       + ++  GL
Sbjct: 642 LHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGL 695



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 123/307 (40%), Gaps = 46/307 (14%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW----CSSGKMREAQ 107
           V  Y  L+   C  +      A   R++R G     RT  I  N +    C + +  EA 
Sbjct: 156 VHTYGILMDCCCRARRPDLGPAFFARLLRAGL----RTRTIEANTFLKCLCHAKRTDEAV 211

Query: 108 E-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLI 164
           +  L  MSD G  P     + +++ L      + A  MV +M K+G     D+ +FN++I
Sbjct: 212 DVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVI 271

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
               K GEV     +   + + G+  DV TY  ++ A+ KA  +D+A  +L  +V+ G +
Sbjct: 272 HGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVE 331

Query: 225 PFPSLYAPIIKG------------MFRR-----------------------GQFDDAFCF 249
           P    Y  II G            MFR+                       G+  DA   
Sbjct: 332 PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEI 391

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F  M  KGH P+   Y++L+      GRF +  N    M + G+     CF+++      
Sbjct: 392 FQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAK 451

Query: 310 CGKHDLA 316
            G  D A
Sbjct: 452 RGMMDEA 458



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 71/145 (48%), Gaps = 2/145 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +V   T  ++++   ++ L D A+ +F+K  A +C+  + + N+++ AL +V+    A  
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAND 741

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   +   G VP+  TY ++++     G + EA      M   G  P  R  + +++ LL
Sbjct: 742 LFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLL 801

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLE 158
             G +  A   ++K+   G ++ LE
Sbjct: 802 QKGDIVKAGYYMSKV--DGTIISLE 824


>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 8/309 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK      S      +I  + + GL + AVE+F +   F C   V +YN +L  L  
Sbjct: 98  LQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLG 157

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                  Y + R M R GF P+  TY +L+ A C + K+  A++ L EMS+KG  P    
Sbjct: 158 ENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVS 217

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++  +   G ++  +Q+  +     F   +  +N+LI  +CK  + +  VE+   + 
Sbjct: 218 YTTVISSMCEVGMVKEGRQLAER-----FEPVVSVYNALINGLCKERDYKGGVELMSEMV 272

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V +Y  LI  +S +G I+ AF LL  +++ G  P     + ++KG F RG   
Sbjct: 273 EKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTF 332

Query: 245 DAFCFFSEMKIKGH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           DA   +++M I+G    PN   Y  L+      G   +A +  + M E+G +P  R +  
Sbjct: 333 DALDMWNQM-IRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGS 391

Query: 303 VTDGLKNCG 311
           + +G    G
Sbjct: 392 LINGFTKRG 400



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 141/302 (46%), Gaps = 6/302 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K+  VD A ++  + +   C    + Y +++ ++CEV +      L  R 
Sbjct: 182 TYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAER- 240

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               F P    Y  L+N  C     +   E + EM +KG +P V     L+  L N+G +
Sbjct: 241 ----FEPVVSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQI 296

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKI 197
           E A  ++ +M+K+G   ++ T +SL++     G     ++M+  + +  GL  +V  Y  
Sbjct: 297 ELAFSLLAQMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNT 356

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+      G ID+A  +  ++ E G  P    Y  +I G  +RG  + A   +++M   G
Sbjct: 357 LVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSG 416

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN  VYT ++    R  +F EA + +  M++    P    F+    GL + G+ D AE
Sbjct: 417 CCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAE 476

Query: 318 KI 319
           K+
Sbjct: 477 KV 478



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 134/303 (44%), Gaps = 39/303 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V +YN+L+  LC+ + + G   L+  M+ KG  P+  +Y+ L+N   +SG++  A   L 
Sbjct: 245 VSVYNALINGLCKERDYKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLA 304

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICK 169
           +M  +G +P +     LV+G    G    A  M N+MI+ GF L  ++  +N+L++  C 
Sbjct: 305 QMLKRGCHPNIHTLSSLVKGCFVRGTTFDALDMWNQMIR-GFGLQPNVVAYNTLVQGFCS 363

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG------- 222
            G ++  V ++  + ++G   ++ TY  LI   +K G ++ A  + + ++  G       
Sbjct: 364 HGNIDKAVSVFLHMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVV 423

Query: 223 ----------HKPF----------------PSL--YAPIIKGMFRRGQFDDAFCFFSEMK 254
                     H  F                PS+  +   IKG+   G+ D A   F +M+
Sbjct: 424 YTSMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQME 483

Query: 255 IKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            +   PPN   Y  L+    +  R  EA     E+   G+   +  ++ +  G  N G  
Sbjct: 484 QQYRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLP 543

Query: 314 DLA 316
            +A
Sbjct: 544 GIA 546



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 3/247 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW   ++++ + L  +    + +++ F  HG +D AV VF       C   +  Y SL+ 
Sbjct: 337 MWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEIGCSPNIRTYGSLIN 394

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +     GA  +  +M+  G  P+   Y  +V A C   K +EA+  ++ MS +   P
Sbjct: 395 GFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEAESLIEIMSKENCAP 454

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICKSGEVEFCVEM 179
            V   +  ++GL +AG L+ A+++  +M +Q     ++ T+N L++ + K+  +E    +
Sbjct: 455 SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLAKANRIEEAYGL 514

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G+    STY  L+     AG+   A +L+  ++ +G  P       II    +
Sbjct: 515 TREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEITMNMIILAYCK 574

Query: 240 RGQFDDA 246
           +G+ + A
Sbjct: 575 QGKAERA 581



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 119/270 (44%), Gaps = 2/270 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
            TLS +++     G   +A++++N+    F  Q  V+ YN+L+   C       A ++  
Sbjct: 316 HTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFL 375

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
            M   G  P+ RTY  L+N +   G +  A     +M   G  P V     +V+ L    
Sbjct: 376 HMEEIGCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHS 435

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTY 195
             + A+ ++  M K+     + TFN+ I+ +C +G +++  +++  + +   C  ++ TY
Sbjct: 436 KFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTY 495

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+  ++KA  I+EA+ L   +   G +   S Y  ++ G    G    A     +M +
Sbjct: 496 NELLDGLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMV 555

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            G  P+     M+I    + G+   A   L
Sbjct: 556 NGKSPDEITMNMIILAYCKQGKAERAVQML 585



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+++M  +GF   +  +  +++ +   G    A E    + + G +P V+  + ++  LL
Sbjct: 97  LLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLL 156

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               ++    +   M + GF  ++ T+N L++ +CK+ +V+   ++   +   G C +  
Sbjct: 157 GENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPNAV 216

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +Y  +I ++ + GM+ E  +L         +P  S+Y  +I G+ +   +       SEM
Sbjct: 217 SYTTVISSMCEVGMVKEGRQLAERF-----EPVVSVYNALINGLCKERDYKGGVELMSEM 271

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             KG  PN   Y+ LI      G+   A + L +M + G  P
Sbjct: 272 VEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHP 313



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 9/198 (4%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +++++ L   G ++S + ++ +M  QGF    + F S+I    + G  E  VEM+Y + +
Sbjct: 79  EVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKE 138

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G    V  Y  ++  +     I   + +  ++  DG +P    Y  ++K + +  + D 
Sbjct: 139 FGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDG 198

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A     EM  KG  PN   YT +I +MC  G   V+    L E  E    P+   ++ + 
Sbjct: 199 AKKLLVEMSNKGCCPNAVSYTTVISSMCEVG--MVKEGRQLAERFE----PVVSVYNALI 252

Query: 305 DGLKNCGKHDLAEKIELL 322
           +GL  C + D    +EL+
Sbjct: 253 NGL--CKERDYKGGVELM 268



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 3/169 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALC 63
           IE+M   N + S  T +  I+     G +D A +VF +    + C   ++ YN LL  L 
Sbjct: 444 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLDGLA 503

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      AY L R +  +G      TY  L++  C++G    A + + +M   G +P   
Sbjct: 504 KANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSPDEI 563

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMI--KQGFVLDLETFNSLIETICKS 170
             ++++      G  E A QM++ +   ++ +  D+ ++ ++I  +C+S
Sbjct: 564 TMNMIILAYCKQGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRS 612


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 137/276 (49%), Gaps = 4/276 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II      G V +A+ + +      CQ  V+ Y  LL A+C+   F  A  ++  M
Sbjct: 143 TYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEM 202

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY +++N  C  G++ +A+E L  +S  GF P +     +++GL  A   
Sbjct: 203 RAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRW 262

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +  K +  +M+ +  V +  TF+ L+   C+ G VE  +++   + + G   + +   I+
Sbjct: 263 DDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIV 322

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ K G +D+A+  L+N+   G  P    Y  +++G+ R G+++ A     EM  K  
Sbjct: 323 INAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNC 382

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMG 292
           PPN   + T +  +C +G   +E A  L+E M E G
Sbjct: 383 PPNEVTFNTFICILCQKG--LIEQAIKLIELMPEYG 416



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 3/255 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IELM  Y  SV   T + ++  F   G VD+A+E+FN      C+   + Y +LL  L
Sbjct: 407 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LPCEPNTITYTTLLTGL 463

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A  L+  MI+K    +  T+ +LV+ +C  G + EA E + +M + G  P +
Sbjct: 464 CHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNL 523

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G+      E A ++++ ++ +G  LD  T++S+++ + +    E  ++M ++
Sbjct: 524 ITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHA 583

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           V  +G+   V  Y  ++ A+ K    D+A      +V +G  P  S Y  +I+G+   G 
Sbjct: 584 VQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGL 643

Query: 243 FDDAFCFFSEMKIKG 257
             +A    SE+  KG
Sbjct: 644 LKEARYVLSELYAKG 658



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 155/343 (45%), Gaps = 46/343 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G VD+A E+ N+ +++  Q  ++ Y ++L  LC  + +     L   M
Sbjct: 213 TYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM 272

Query: 79  IRKGFVPDKRTYAILV-----------------------------------NAWCSSGKM 103
           + K  VP++ T+ +LV                                   NA C  G++
Sbjct: 273 VDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRV 332

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A +FL  M   G NP       +++GL  AG  E AK+++ +M+++    +  TFN+ 
Sbjct: 333 DDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTF 392

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +E  +++   + + G    + TY  L+      G +D A  L +NL     
Sbjct: 393 ICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PC 449

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAA 282
           +P    Y  ++ G+    + D A    + M  K  P N   + +L++  C +G  FVE A
Sbjct: 450 EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKG--FVEEA 507

Query: 283 NYLV-EMTEMGLTPISRCFDLVTDGL-KNCGKHDLAEKIELLE 323
             LV +M E G TP    F+ + DG+ K+C      E +ELL 
Sbjct: 508 MELVNQMMEHGCTPNLITFNTLLDGITKDCNSE---EALELLH 547



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A+++      + C   ++ YN+L+   C       A  L   +  +   P+  
Sbjct: 398 QKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTI 454

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C + ++  A E L  M  K         ++LV      G++E A ++VN+M
Sbjct: 455 TYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 514

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L TFN+L++ I K    E  +E+ + +   G+  D  TY  ++  +S+    
Sbjct: 515 MEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRT 574

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++LH + + G +P   +Y  I+  + +R + D A  FF+ M   G  PN   Y +L
Sbjct: 575 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIIL 634

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I      G   EA   L E+   G+
Sbjct: 635 IEGLAHEGLLKEARYVLSELYAKGV 659



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 42/338 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G   +A  V     A      V  YN+L+   C       A  LI  M    
Sbjct: 80  LIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---P 136

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  ++   C  G++ +A   L +M  +G  P V    +L++ +  +     A 
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAM 196

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM---------------YYSVCKLG 187
            ++++M  +G   ++ T+N +I  +C+ G V+   E+               Y +V K G
Sbjct: 197 NVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLK-G 255

Query: 188 LCA-----DVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           LCA     DV                 T+ +L+    + GM++ A ++L  + + G  P 
Sbjct: 256 LCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPN 315

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
            +L   +I  + ++G+ DDA+ F + M + G  P+   YT ++    R GR+  A   L 
Sbjct: 316 TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLP 375

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           EM      P    F+     L  C K  + + I+L+E+
Sbjct: 376 EMVRKNCPPNEVTFNTFICIL--CQKGLIEQAIKLIEL 411



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 120/265 (45%), Gaps = 3/265 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L   L+  LC       A  ++R     G   D   Y  LV  +C  G++  A+  + 
Sbjct: 74  VYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIA 133

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P       +++GL + G +  A  +++ M+++G    + T+  L+E +CKS 
Sbjct: 134 SMP---VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSS 190

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                + +   +   G   ++ TY ++I  + + G +D+A  +L+ L   G +P    Y 
Sbjct: 191 GFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYT 250

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG+    ++DD    F+EM  K   PN   + ML+    RGG    A   L +M++ 
Sbjct: 251 TVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQH 310

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G TP +   ++V + +   G+ D A
Sbjct: 311 GCTPNTTLCNIVINAICKQGRVDDA 335



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/342 (21%), Positives = 146/342 (42%), Gaps = 34/342 (9%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M  +  + +    +++I    K G VD+A +  N    + C    + Y ++L  L
Sbjct: 302 QVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGL 361

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----- 117
           C    +  A  L+  M+RK   P++ T+   +   C  G + +A + ++ M + G     
Sbjct: 362 CRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGI 421

Query: 118 --FNPPVRG-------------------------RDLLVQGLLNAGYLESAKQMVNKMIK 150
             +N  V G                            L+ GL +A  L++A +++  MI+
Sbjct: 422 VTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQ 481

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +   L+  TFN L+   C+ G VE  +E+   + + G   ++ T+  L+  ++K    +E
Sbjct: 482 KDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEE 541

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLI 269
           A  LLH LV  G       Y+ ++  + R  + ++A      ++  G  P   +Y  +L 
Sbjct: 542 ALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILF 601

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            +C R     +A ++   M   G  P    + ++ +GL + G
Sbjct: 602 ALCKR-CETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEG 642


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  124 bits (312), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 140/318 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK    M+   +     T S  IE   K    D A +VF +    +C    + YN ++ 
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 286

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A+     M+  G  PD  TY  L+N  C   +++EA+  L EMS  G  P
Sbjct: 287 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKP 346

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     LV G +  G    A  ++ +MI  G   +   +++LI  +CK G++    ++ 
Sbjct: 347 NIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 406

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K+GL  D  TY  L+    +    D AF LL+ +   G  P    Y  +I G+ + 
Sbjct: 407 KEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQN 466

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  +A     EM  +G  PN  +Y  LI    + G    A   L +MT+  + P   C+
Sbjct: 467 GESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCY 526

Query: 301 DLVTDGLKNCGKHDLAEK 318
           + +  GL   G+ + AE+
Sbjct: 527 NSLIKGLSTVGRMEEAEE 544



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 7/318 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +KP     +P     +I    K G +  A E   K T  N    +  YNSL+  L  V
Sbjct: 482 EGLKPNAFMYAP-----LIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTV 536

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A     ++ ++G VPD+ TY+ L++ +C +G + +A + L++M + G  P     
Sbjct: 537 GRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTY 596

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L++G   +   E    ++  M+  G   D   +  +I  + +S  +E    +   V K
Sbjct: 597 TDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEK 656

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D+  Y  LI  + K   +++A  LL  + ++G +P    Y  +I G  R G    
Sbjct: 657 NGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISR 716

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  +  KG  PN   YT LI    + G   +A +   EM + G+ P +  ++++  
Sbjct: 717 ARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLAT 776

Query: 306 GLKNCGKHDLAEKIELLE 323
           G  +    DL + + L E
Sbjct: 777 GCSDAA--DLEQALFLTE 792



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 140/336 (41%), Gaps = 37/336 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++ F K G    A ++  +  +   Q   ++Y++L+  LC++     A  L++ MI+ G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 83  FVPDKRT-----------------------------------YAILVNAWCSSGKMREAQ 107
             PD  T                                   Y I++N  C +G+ +EA 
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L+EM  +G  P       L+ G    G +  A + + KM K     DL  +NSLI+ +
Sbjct: 474 NLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGL 533

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              G +E   E Y  V K GL  D  TY  LI    K G +++A +LL  ++  G KP  
Sbjct: 534 STVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNA 593

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +++G F+   ++        M   G  P+  +Y ++I    R      A   L E
Sbjct: 594 DTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTE 653

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           + + GL P    +  +  GL  C   D+ + + LL+
Sbjct: 654 VEKNGLVPDLHIYSSLISGL--CKIADMEKAVGLLD 687



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 143/312 (45%), Gaps = 5/312 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++P   + +P    L+   F +H   D A E+ N+         V  Y  ++  LC+   
Sbjct: 414 LRPDTFTYNP----LMQGHFQQHD-KDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGE 468

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  MI +G  P+   YA L+      G +  A E L++M+    +P +   + 
Sbjct: 469 SKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNS 528

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++GL   G +E A++   ++ K+G V D  T++ LI   CK+G +E   ++   +   G
Sbjct: 529 LIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSG 588

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  L+    K+   ++   +L +++  G KP   +Y  +I+ + R    + AF
Sbjct: 589 LKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAF 648

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +E++  G  P+  +Y+ LI+   +     +A   L EM + GL P   C++ + DG 
Sbjct: 649 MVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGF 708

Query: 308 KNCGKHDLAEKI 319
              G    A  +
Sbjct: 709 CRSGDISRARNV 720



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 135/332 (40%), Gaps = 37/332 (11%)

Query: 1   MWKTIELMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           + + I+     + S SP T  L ++++ + K G V NA +V                N L
Sbjct: 155 IQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGL 214

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA--------------------------- 91
           L  L         + L   M   G +PD  TY+                           
Sbjct: 215 LKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDC 274

Query: 92  --------ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
                   ++++  C SG + EA  F +EM D G +P       L+ GL     L+ AK 
Sbjct: 275 AMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKA 334

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           ++++M   G   ++  + +L++   K G+     ++   +   G+  +   Y  LI  + 
Sbjct: 335 LLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLC 394

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +  A +LL  +++ G +P    Y P+++G F++   D AF   +EM+  G  PN  
Sbjct: 395 KIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVY 454

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            Y ++I    + G   EA N L EM   GL P
Sbjct: 455 SYGIMINGLCQNGESKEAGNLLEEMISEGLKP 486



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 132/298 (44%), Gaps = 25/298 (8%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-----------------------RKGFVPDKRTYA 91
           +  L  +LC   LF  A  L+ +MI                        +   P      
Sbjct: 118 FARLAASLCAASLFPQANGLLHQMILAHPHPPLVLASIQRAIQDTDHRSRSPSPSTAVLD 177

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +LV+ +  +G +R A + +  M+D G  P  R  + L++ LL A  +E   ++   M   
Sbjct: 178 VLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFMEGA 237

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G + D+ T+++ IE  CK+ + +   +++  + +     +  TY ++I  + ++G ++EA
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           F     +V+ G  P    Y  ++ G+ +  +  +A     EM   G  PN  VY  L+  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             + G+  EA + L EM   G+ P    +D +  GL   G+   A K+  E+++V LR
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLR 415



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 103/220 (46%), Gaps = 1/220 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ ++  + + G VPD   Y+ L++  C    M +A   L EM+ +G  P +   + L+ 
Sbjct: 647 AFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALID 706

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   +G +  A+ + + ++ +G V +  T+ +LI+  CK+G++    ++Y  +   G+  
Sbjct: 707 GFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAP 766

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y +L    S A  +++A  L   +   G+    SL+  ++ G  +RG+  +     
Sbjct: 767 DAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANV-SLFNTLVHGFCKRGKLQETEKLL 825

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             M  +   PN      +++  G+ G+  EA     E+ +
Sbjct: 826 HVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 95/198 (47%), Gaps = 1/198 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    K   ++ AV + ++      +  ++ YN+L+   C       A  +   ++ 
Sbjct: 667 SSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILA 726

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG VP+  TY  L++  C +G + +A +  +EM D+G  P     ++L  G  +A  LE 
Sbjct: 727 KGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQ 786

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  +M  +G+  ++  FN+L+   CK G+++   ++ + +    +  +  T + ++ 
Sbjct: 787 ALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVS 845

Query: 201 AVSKAGMIDEAFRLLHNL 218
              KAG + EA R+   L
Sbjct: 846 EFGKAGKLGEAHRVFAEL 863


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 131/276 (47%), Gaps = 2/276 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ Y  ++  L        A  L   M++KG VP+  TY  +V+A C +  M +A+
Sbjct: 268 CSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAE 327

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M D    P       ++ G    G  + A +M  +M ++G + D+ TFNSL++++
Sbjct: 328 LVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSL 387

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK    +   E+++S+   G   D+ +Y IL+   +  G   +   L H++ ++G     
Sbjct: 388 CKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADS 447

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  +I    +RG  D+A   F+EM+ +G  PN   Y  +I    R GR  +A   L +
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M  +GL P +  +  +  G   C   DL +  EL+ 
Sbjct: 508 MISIGLKPNTVVYHSLIQGF--CTHGDLIKAKELVS 541



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 129/284 (45%), Gaps = 14/284 (4%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           H + DN +   + C           +N L+ A  +  +   A  +   M  +G  P+  T
Sbjct: 436 HSMTDNGIVADSHC-----------FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVT 484

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           YA ++ A C  G++ +A E L +M   G  P       L+QG    G L  AK++V++M+
Sbjct: 485 YATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMM 544

Query: 150 KQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            QG    ++  F+S+I ++C  G V    +++  V  +G   D+ T+  LI      G +
Sbjct: 545 DQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKM 604

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+AF +L  +V  G +P    Y+ +I G F+ G+ DD    F EM  K   P    Y+++
Sbjct: 605 DKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLV 664

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNC 310
           +    R GR   A     EM E G       + ++  GL   NC
Sbjct: 665 LDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQGLCRNNC 708



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 127/266 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II      G V NA +VFN       +  +  +NSL+   C V     A+ ++  M+
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMV 615

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY+ L+N +  SG++ +     +EM  K   P      L++ GL  AG   
Sbjct: 616 SAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTS 675

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +AK+M ++MI+ G  + + T+  +++ +C++   +  + +++ +  + L  +++    +I
Sbjct: 676 AAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMI 735

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K    +EA  L  ++   G  P  S Y  +I  + + G  ++A   FS M+  G  
Sbjct: 736 HALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCA 795

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYL 285
           P+  +   +I M  + G  V+A  Y+
Sbjct: 796 PSSRLLNDIIRMLLQKGEIVKAGYYM 821



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 73/159 (45%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++S  T ++I++   ++   D A+ +F+K  A N +  + + N+++ AL +VK    A+ 
Sbjct: 690 AMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHD 749

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   +   G VP+  TY +++      G + EA      M   G  P  R  + +++ LL
Sbjct: 750 LFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLL 809

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
             G +  A   ++K+      L+  T + LI      G 
Sbjct: 810 QKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGR 848


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 135/287 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 187 ANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 246

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK+G+++   ++   +   GL  D  TY  LI
Sbjct: 247 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 306

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF+    ++++  +     Y  +I G+ + GQ  DA     EM   G  
Sbjct: 307 DGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK 366

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 367 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + +RM
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRM 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C +G +++A + + EMS KG  P       L+ G    G L
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G+     +M   +  +GL  D+ TY ++
Sbjct: 316 DTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMI 375

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  +GH P    Y  ++ G
Sbjct: 376 INEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 119/265 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 148 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKE 207

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG +P+  T+  L++  C +G++  A E  + M  +   P +   
Sbjct: 208 SKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITY 267

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   +    + +
Sbjct: 268 NTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQ 327

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 328 ENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWK 387

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
                 EM+  GH P+   Y +L+ 
Sbjct: 388 GSKLLKEMQRNGHAPSVVTYNVLMN 412



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L +++ F   +     ++
Sbjct: 57  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEIL 116

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 117 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 176

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 177 EGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 236

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ + G    A     EM +KG  
Sbjct: 237 DGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLK 296

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 297 PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKM 356

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 357 LREMLSVGLK 366



 Score = 44.3 bits (103), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 35/199 (17%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMY-----------YSVCK------------------- 185
           D+  F+ LI    +SG +   +E Y           +  C+                   
Sbjct: 53  DIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFY 112

Query: 186 -----LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 G  A +  + IL+    K G I  A  +   + + G +P    Y  ++ G  R 
Sbjct: 113 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 172

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D+ F   S M   G  P+   Y++LI    +  +  +A     EM   GL P    F
Sbjct: 173 GDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 232

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             + DG    G+ DLA +I
Sbjct: 233 TTLIDGHCKNGRVDLAMEI 251


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 142/304 (46%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A   F++  +  C   V+ Y +LL A  + K 
Sbjct: 314 MKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQ 373

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-------- 119
              A  +  RMI  G  P+  TY+ LV+  C +G++++A E   ++     N        
Sbjct: 374 LPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFE 433

Query: 120 --------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
                   P V     L+ GL  A  +  A+++++ M+  G   +   +++LI+  CK G
Sbjct: 434 GKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVG 493

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI A+ K   +D A ++L  +VE    P    Y 
Sbjct: 494 KIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYT 553

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R G+   A    S M+ KG  PN   YT LI   G+ G+   +    ++M+  
Sbjct: 554 AMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTK 613

Query: 292 GLTP 295
           G  P
Sbjct: 614 GCAP 617



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 128/281 (45%), Gaps = 16/281 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ ++  LCE      A+ L + M   G  PD  TY IL++++C +G + +A+ +  EM 
Sbjct: 291 YSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR 350

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +  V     L+   L A  L  A  + N+MI  G   +  T+++L++ +CK+GE++
Sbjct: 351 SIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQ 410

Query: 175 FCVEMYYSVCKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              E+Y  +                    +  +V TY  LI  + KA  + +A  LL  +
Sbjct: 411 KACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAM 470

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           + +G +P   +Y  +I G  + G+ D+A   F  M   G+ P    YT LI    +  R 
Sbjct: 471 LSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRL 530

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             A   L +M E   TP    +  + DGL   G+   A K+
Sbjct: 531 DLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKL 571



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 4/280 (1%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S++P   T   +I+   K   V +A E+ +   +  C+   ++Y++L+   C+V     A
Sbjct: 439 SIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNA 498

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +  RM + G++P   TY  L++A     ++  A + L +M +    P V     ++ G
Sbjct: 499 QEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDG 558

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G  + A ++++ M ++G   ++ T+ +LI+ + KSG+V+  ++++  +   G   +
Sbjct: 559 LCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPN 618

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY++LI     AG++DEA  LL  + +     +   Y  +++G  ++  F  +     
Sbjct: 619 YVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKK--FIASLGLLE 676

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           E++  G  P  PVY +LI    + GR  EA     EM E+
Sbjct: 677 ELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMEL 716



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 121/266 (45%), Gaps = 36/266 (13%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I+   K   +D A++V ++    +C   V+ Y +++  LC +     A  L+  
Sbjct: 515 HTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSM 574

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG  P+  TY  L++    SGK+  + +   +MS KG  P      +L+     AG 
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGL 634

Query: 138 LESAKQMVNKM--------------IKQGF----------VLDLETFNS---------LI 164
           L+ A  ++++M              + QGF          + +LE+  +         LI
Sbjct: 635 LDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLI 694

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVST---YKILIPAVSKAGMIDEAFRLLHNLVED 221
           +   K+G +E  +E++  + +L    ++++   Y  LI A+  A  +++AF L   +   
Sbjct: 695 DNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRK 754

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAF 247
           G  P  S++  +IKG+ +  ++++A 
Sbjct: 755 GVVPELSVFVCLIKGLIKVNKWNEAL 780



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + +M+    S +  T + +I+  GK G VD ++++F + +   C    + Y  L+   
Sbjct: 570 KLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHC 629

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-- 120
           C   L   A++L+  M +  +    + Y  +V  +  S K   +   L+E+   G  P  
Sbjct: 630 CAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVPIA 687

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET---FNSLIETICKSGEVEFCV 177
           PV G  LL+     AG LE A ++  +M++    L++ +   + SLI+ +C + ++E   
Sbjct: 688 PVYG--LLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAF 745

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           E+Y  + + G+  ++S +  LI  + K    +EA +L +++ ++G
Sbjct: 746 ELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 105/313 (33%), Gaps = 73/313 (23%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR---------- 104
           YN+L+  L         + + + M   GF  DK T      A C  G+            
Sbjct: 43  YNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVMIERED 102

Query: 105 ----------------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                                 EA  FL  M      P V     L+ G L    L   K
Sbjct: 103 FKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCK 162

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++N M+K+G   +   FNSL+ + C + +  +  ++   +   G       Y I I ++
Sbjct: 163 RIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSI 222

Query: 203 SKA-----------------------------------------GMIDEAFRLLHNLVED 221
                                                       G  D AF+++  ++  
Sbjct: 223 CGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGK 282

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P  S Y+ +I  +    + + AF  F EMK  G  P+   YT+LI    + G   +A
Sbjct: 283 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQA 342

Query: 282 ANYLVEMTEMGLT 294
            ++  EM  +G +
Sbjct: 343 RSWFDEMRSIGCS 355



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 33/195 (16%)

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+ D G+ P     + LVQ L  AG ++   ++  +M + GF +D  T     + +CK G
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 172 ----------------EVEFCVEMYYSVCKLGL----------------CADVSTYKILI 199
                           +   C +M   + +  L                  +V TY+ L+
Sbjct: 90  RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL 149

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K   +    R+++ ++++G  P PSL+  ++        +  A+     M   G P
Sbjct: 150 TGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCP 209

Query: 260 PNRPVYTMLI-TMCG 273
           P    Y + I ++CG
Sbjct: 210 PGYVAYNIFIGSICG 224



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYALIRRM 78
           L+I+ F K G ++ A+E+  +    +    +    +Y SL+ ALC       A+ L   +
Sbjct: 692 LLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEI 751

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            RKG VP+   +  L+       K  EA +    + D+G N
Sbjct: 752 TRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVN 792


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 143/306 (46%), Gaps = 1/306 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   T +LII+ F + G V+  V  F K         V+ + +L+  LC+      A+ L
Sbjct: 257 VDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFEL 316

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +  M+R+G+ P+  T+  L++  C  G   +A + FL+ +   G+ P V     ++ G  
Sbjct: 317 LEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYC 376

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               L  A+ ++++M +QG V +  T+ +LI+  CK G      E+   + K G   ++ 
Sbjct: 377 KEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIY 436

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  +I  + K G +DEA+RLL+ +   G +     Y  ++    R+   + +  FF++M
Sbjct: 437 TYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKM 496

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G  P+   YT LI+   R  +  E+     E   +GL P  + +  +  G    G  
Sbjct: 497 LKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNT 556

Query: 314 DLAEKI 319
            LA K+
Sbjct: 557 SLAVKL 562



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 135/308 (43%), Gaps = 7/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G  + A  +F K    +  +  V  Y +++   C+    + A  L+ R
Sbjct: 331 THTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSR 390

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G VP+  TY  L++  C  G    A E +  M  +GF+P +   + ++ GL   G 
Sbjct: 391 MQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS 450

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A +++NK+   G   D  T+  L+   C+  +    +  +  + K+G   D+ +Y  
Sbjct: 451 LDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTT 510

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +   + E+ RL    V  G  P    Y  +I G  R G    A   F  M   G
Sbjct: 511 LISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHG 570

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
             P+   Y  LI+   +  +  +A N    M + GL+P  ++R    +T   + C K D 
Sbjct: 571 CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTR----LTLAYEYCKKDDS 626

Query: 316 AEKIELLE 323
           +  I +L+
Sbjct: 627 STAINVLD 634



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 122/255 (47%), Gaps = 3/255 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  ++  M  +G V   +T   +++     G +  A+    EM  +G +P      L+V 
Sbjct: 173 AVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVV 232

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
              N G +  A++ +N M+++GF++D  T   +I+  C+ G V   V  ++ + ++GL  
Sbjct: 233 ACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAP 292

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V  +  LI  + K G I +AF LL  +V  G KP    +  +I G+ ++G  + AF  F
Sbjct: 293 NVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLF 352

Query: 251 SEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            ++ +  G+ PN   YT +I    +  +   A   L  M E GL P +  +  + DG  +
Sbjct: 353 LKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDG--H 410

Query: 310 CGKHDLAEKIELLEV 324
           C   +     EL+++
Sbjct: 411 CKVGNFVRAYELMDL 425



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 137/317 (43%), Gaps = 40/317 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVF-NKCTAFNCQQCVLLYNSLLFALCEVK 66
           M+   L  S QTL+ +++     GLV+ A  +F   C       CV  +  ++ A C + 
Sbjct: 180 MQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVS-FKLMVVACCNMG 238

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A   +  M+ +GF+ D  T  ++++A+C  G +     +  +M + G  P V    
Sbjct: 239 RVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFT 298

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ GL   G ++ A +++ +M+++G+  ++ T  +LI+ +CK G  E            
Sbjct: 299 ALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTE------------ 346

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDD 245
                                  +AFRL   LV  DG+KP    Y  +I G  +  + + 
Sbjct: 347 -----------------------KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    S M+ +G  PN   YT LI    + G FV A   +  M + G +P    ++ + D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 306 GLKNCGKHDLAEKIELL 322
           GL  C K  L E   LL
Sbjct: 444 GL--CKKGSLDEAYRLL 458



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 113/277 (40%), Gaps = 3/277 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++LM     S +  T + II+   K G +D A  + NK +    Q   + Y  L+  
Sbjct: 420 YELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSV 479

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C     + +     +M++ GF PD  +Y  L++ +C   +M+E++   +E    G  P 
Sbjct: 480 HCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPT 539

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            +    ++ G    G    A ++  +M   G   D  T+ +LI  +CK  +++    +Y 
Sbjct: 540 KKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYD 599

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   GL     T   L     K      A  +L  L +   + +      +++ +   G
Sbjct: 600 AMMDKGLSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEK---RQWIRTVNTLVRKLCSEG 656

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           + D A  FF ++  K    NR      +  C    ++
Sbjct: 657 KLDMAALFFHKLLDKEPNVNRVTLLGFMNKCYESNKY 693



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 91/240 (37%), Gaps = 52/240 (21%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R Y +   A   +  +  A E +Q M               V      G L+ A  MV +
Sbjct: 135 RLYIVSATALIGNKNLERANEVMQCM---------------VMNFAENGKLKEAVNMVVE 179

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M  QG V   +T N +++     G VE    M+  +C+ G+  D  ++K+++ A    G 
Sbjct: 180 MQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGR 239

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + EA + L+ +VE G                     D+A C                 T+
Sbjct: 240 VLEAEKWLNAMVERGFI------------------VDNATC-----------------TL 264

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           +I    + G       Y  +M EMGL P    F  + +GL  C +  + +  ELLE  +R
Sbjct: 265 IIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGL--CKQGSIKQAFELLEEMVR 322


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  124 bits (312), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 132/270 (48%), Gaps = 1/270 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ I+LMK  N+ +S +T S++I  + + GL   AV  FN+   +NC+   + ++ L+  
Sbjct: 162 WQVIDLMKARNVEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISI 221

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC  +    A +    + +  F PD   Y  LV  WC +G + EA+    EM   G  P 
Sbjct: 222 LCRKRRATEAQSFFDSL-KDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPN 280

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +++  L   G +  A  +  +M+  G   +  TFN+L+    K+G  E  +++Y 
Sbjct: 281 VYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYN 340

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + ++G   D  TY  LI +  K G +DEA ++L+++V+ G  P  S +  +   + +  
Sbjct: 341 QMKRMGCPPDTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLR 400

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             + A   +++MK      N   Y +L+ M
Sbjct: 401 DVNGAHRLYAKMKELKCKANTVTYNILMRM 430



 Score = 50.8 bits (120), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  ++ K     C+   + YN L+    + K       L + M      P+  TY +
Sbjct: 402 VNGAHRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCV 461

Query: 93  LVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           L+  +C  G    A +F +EM  +K   P +   + ++Q L  AG L+  +++V  M+ +
Sbjct: 462 LIAMYCGMGHWNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDR 521

Query: 152 GFV 154
           GF 
Sbjct: 522 GFA 524


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L+ +I      G +  A E++    +  C   V  Y+ L+  LC++  F  A  ++  M 
Sbjct: 316 LNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEME 375

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG  P+  TY+ L++++C +G   +A+  L +M  KGF+   +G + ++  L   G L+
Sbjct: 376 EKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLD 435

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++V +M  QG   D+ T+N++I  +C +  +E    ++ ++ + G+ A+  TY  LI
Sbjct: 436 QATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLI 495

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ + G   E  RL   ++  G +     Y  +IK + + G  D +     EM  KG  
Sbjct: 496 HALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIK 555

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           PN   Y MLI    + G+  +A     EM   GLTP    ++ + +GL   G
Sbjct: 556 PNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG 607



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 142/303 (46%), Gaps = 13/303 (4%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+M          T S+++    K G   +AV + ++     C   ++ Y++LL + C  
Sbjct: 337 EMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRN 396

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            ++  A A++ +M+ KGF  + + Y  ++ A C  GK+ +A   +QEM  +G  P +   
Sbjct: 397 GMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTY 456

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFCVEMYY 181
           + ++  L N   +E A+ +   +I++G V +  T+N+LI  + ++G     +    EM  
Sbjct: 457 NTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLL 516

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             C+L    DV +Y  LI A+ K G +D +  LL  +V  G KP    Y  +I  + + G
Sbjct: 517 HGCQL----DVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAG 572

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  DA     EM  +G  P+   Y  LI    + G    A N L ++    + P     D
Sbjct: 573 KVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHP-----D 627

Query: 302 LVT 304
           +VT
Sbjct: 628 IVT 630



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 133/313 (42%), Gaps = 31/313 (9%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM-----------I 79
           G V  A  + ++     C   V+ Y  LL  LC  +    A A++ R+           I
Sbjct: 261 GRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVI 320

Query: 80  R--------------------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           R                    KG  PD  TY+IL++  C  G+   A   L EM +KG  
Sbjct: 321 RGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCA 380

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +     L+      G  + A+ M+++M+ +GF ++ + +N +I  +CK G+++    +
Sbjct: 381 PNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRL 440

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D+ TY  +I  +    +++EA  +  NL+E+G       Y  +I  + R
Sbjct: 441 VQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLR 500

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G++ +     SEM + G   +   Y  LI    + G    +   L EM   G+ P +  
Sbjct: 501 NGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFS 560

Query: 300 FDLVTDGLKNCGK 312
           ++++ + L   GK
Sbjct: 561 YNMLINELCKAGK 573



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 4/273 (1%)

Query: 1   MWKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW      ++ M     S++ Q  + II    K G +D A  +  +  +  C+  +  YN
Sbjct: 398 MWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYN 457

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++++ LC   L   A  + R +I +G V +  TY  L++A   +G+ +E      EM   
Sbjct: 458 TMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLH 517

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G    V   + L++ L   G ++ +  ++ +M+ +G   +  ++N LI  +CK+G+V   
Sbjct: 518 GCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDA 577

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +   GL  D+ TY  LI  + K G    A  LL  L  +   P    Y  +I  
Sbjct: 578 LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISW 637

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             +    DDA     +    G  PN   + M++
Sbjct: 638 HCKVRLLDDAAMLLDKAISGGIVPNERTWGMMV 670



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 138/312 (44%), Gaps = 6/312 (1%)

Query: 10  PYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           P   +VSP  ++ ++++    +     +A+ ++ +            +     ALC +  
Sbjct: 133 PRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGR 192

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL+R M R G VPD   Y  +++A  + G + EA   L EM   G    V   + 
Sbjct: 193 AGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFND 252

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV GL   G +  A ++V++M+ QG +  + T+  L++ +C++ + +    M   + ++ 
Sbjct: 253 LVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEV- 311

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V     +I      G +  A  L   +   G  P    Y+ ++ G+ + G+F  A 
Sbjct: 312 ---NVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAV 368

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM+ KG  PN   Y+ L+    R G + +A   L +M   G +  S+ ++ +   L
Sbjct: 369 RMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYAL 428

Query: 308 KNCGKHDLAEKI 319
              GK D A ++
Sbjct: 429 CKDGKLDQATRL 440


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  124 bits (311), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 139/292 (47%), Gaps = 3/292 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  +   G   + + +FN   +        ++N L+ A  +  +   A  +   M ++G
Sbjct: 411 LLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ +++A+   G++ +A E   +M  +G  P       ++QG    G L  AK
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 143 QMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           ++V++MI +G    D+  FNS+I ++CK G V    +++  V  +G   DV T+  LI  
Sbjct: 531 ELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               G +D+AF++L  +   G +     Y+ ++ G F+ G+ +D    F EM+ KG  PN
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNCG 311
              Y +++    R GR V A     EM E G T     + ++  GL   NC 
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 140/291 (48%), Gaps = 4/291 (1%)

Query: 6   ELMKPYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           ++M     + SP  ++   +I  F K G    A  +F++ T    +  V+ YN ++ ALC
Sbjct: 252 QMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALC 311

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           + +    A  ++R+M   G  PD  TY  +++ + + G+++EA +  ++M  +G  P + 
Sbjct: 312 KARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIV 371

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             +  +  L   G  + A ++ + M  +G   D+ ++ +L+      G     + ++ S+
Sbjct: 372 ICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSM 431

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+ AD   + ILI A +K GM+D+A  +   + + G  P    Y+ +I    R G+ 
Sbjct: 432 KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRL 491

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGL 293
            DA   F++M  +G  PN  VY  +I   C  GG  V+A   + EM   G+
Sbjct: 492 TDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGG-LVKAKELVSEMINKGI 541



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 137/308 (44%), Gaps = 2/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +LII+   K   +D A  V  + T    Q   + YN ++     +     A  + R+M
Sbjct: 302 TYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +P+       + + C  G+ +EA E    M+ KG  P +     L+ G  + G+ 
Sbjct: 362 KSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWF 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + N M   G   D   FN LI    K G V+  + ++  + + G+  DV TY  +
Sbjct: 422 ADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A S+ G + +A    + +V  G +P  ++Y  II+G    G    A    SEM  KG 
Sbjct: 482 ISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGI 541

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           P P+   +  +I    + GR ++A +    +T++G  P    F  + DG    GK D A 
Sbjct: 542 PRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAF 601

Query: 318 KI-ELLEV 324
           KI + +EV
Sbjct: 602 KILDAMEV 609



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 141/327 (43%), Gaps = 38/327 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S +I  F + G + +A+E FN+  A   Q    +Y+S++   C       A 
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 73  ALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            L+  MI KG   PD   +  ++N+ C  G++ +A +    ++D G  P V     L+ G
Sbjct: 531 ELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDG 590

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A ++++ M   G   D+ T+++L++   K+G +   + ++  + + G+  +
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY I++  + +AG    A +  H ++E G     S+Y  I+ G+ R    D+A   F 
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710

Query: 252 E---MKIK--------------------------------GHPPNRPVYTMLITMCGRGG 276
           +   M +K                                G  PN   Y ++I    + G
Sbjct: 711 KLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDG 770

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLV 303
              +A N    M + G+ P SR  + +
Sbjct: 771 AVEDANNMFSSMEKSGIVPGSRLLNRI 797



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 119/263 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G V +A ++F+  T    +  V+ + SL+   C V     A+ ++  M   G
Sbjct: 552 VINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVG 611

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D  TY+ L++ +  +G++ +     +EM  KG  P      +++ GL  AG   +A+
Sbjct: 612 VETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAAR 671

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +  ++MI+ G  + +  +  ++  +C++   +  + ++  +  + +   ++    +I A+
Sbjct: 672 KKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAM 731

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    +EA  L   +   G  P  S Y  +I  + + G  +DA   FS M+  G  P  
Sbjct: 732 YKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGS 791

Query: 263 PVYTMLITMCGRGGRFVEAANYL 285
            +   +I M    G   +A NYL
Sbjct: 792 RLLNRIIRMLLEKGEIAKAGNYL 814



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 110/247 (44%), Gaps = 3/247 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE-FL 110
           V  Y+ L+   C  +       L   ++R G    + T + L+   C + +  EA    L
Sbjct: 157 VHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLL 216

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETIC 168
             MS+ G  P V    ++++GL +    + A  +   M K+G     ++  +N++I    
Sbjct: 217 HRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFF 276

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K GE      +++ + + G+  DV TY ++I A+ KA  +D+A  +L  +  +G +P   
Sbjct: 277 KEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTV 336

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G    G+  +A   F +MK +G  PN  +    +    + GR  EAA     M
Sbjct: 337 TYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSM 396

Query: 289 TEMGLTP 295
           T  G  P
Sbjct: 397 TAKGHKP 403



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 111/264 (42%), Gaps = 3/264 (1%)

Query: 56  NSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++LL  LC       A   L+ RM   G VP+  +Y+I++   C +   + A +  Q M+
Sbjct: 196 STLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMA 255

Query: 115 DKGF--NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            +G   +P V   + ++ G    G    A  + ++M +QG   D+ T+N +I+ +CK+  
Sbjct: 256 KEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARA 315

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++    +   +   G   D  TY  +I   +  G + EA ++   +   G  P   +   
Sbjct: 316 MDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNS 375

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            +  + + G+  +A   F  M  KGH P+   Y  L+      G F +       M   G
Sbjct: 376 FLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           +    R F+++       G  D A
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDA 459



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 117/262 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +   G +D A ++ +       +  ++ Y++LL    +    +    L R M
Sbjct: 583 TFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREM 642

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY I++     +G+   A++   EM + G    V    +++ GL      
Sbjct: 643 QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  K+        +   N++I  + K    E   E++ ++   GL  + STY ++
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A  +  ++ + G  P   L   II+ +  +G+   A  + S++  K  
Sbjct: 763 IINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRI 822

Query: 259 PPNRPVYTMLITMCGRGGRFVE 280
                  ++++++  R G++ E
Sbjct: 823 LLEASTTSLMLSLFSRKGKYHE 844



 Score = 46.6 bits (109), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 3/166 (1%)

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR- 213
           L + T++ L++  C++   +  + ++  + + GL     T   L+  +  A   +EA   
Sbjct: 155 LTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNV 214

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLITM 271
           LLH + E G  P    Y+ I+KG+        A   F  M  +G    PN   Y  +I  
Sbjct: 215 LLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHG 274

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             + G   +A +   EMT  G+ P    ++L+ D L      D AE
Sbjct: 275 FFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAE 320


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 131/303 (43%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G +  A+ +F           VL YN LL   C +     A    + M
Sbjct: 374 TYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEM 433

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY IL+N       +   +EF  EM  KG  P     +  +   L  G  
Sbjct: 434 VEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGST 493

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+   MI +G   D  T+N  ++ +CKSG ++    ++  +   GL  D  TY  L
Sbjct: 494 SEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCL 553

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  + G + EA  +   ++  G  P    Y   I    RRG    A+ +F +M  +G 
Sbjct: 554 IHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGV 613

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +LI    R GR   A  +  EM E GL+P    + L+ DG  NC + +  E 
Sbjct: 614 RPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDG--NCKEGNWEEA 671

Query: 319 IEL 321
           I L
Sbjct: 672 IRL 674



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    + G V+ A   F +  A      ++ YNSL+   C+      A  L   +
Sbjct: 339 TYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDL 398

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  P   TY IL++ +C  G + EA+ F QEM ++G  P V    +L+ G      L
Sbjct: 399 KRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNL 458

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              ++  ++M+ +G   D   +N+ I      G      ++   +   G+ +D  TY I 
Sbjct: 459 AMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIF 518

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K+G + +A+ L   +V DG +P    Y  +I     RG+  +A   F  M + G 
Sbjct: 519 LDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGL 578

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   YT+ I    R G    A  +  +M E G+ P    ++++   L   G+ +LA +
Sbjct: 579 PPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQ 638

Query: 319 --IELLEVSL 326
              E+LE  L
Sbjct: 639 HFHEMLERGL 648



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 136/305 (44%), Gaps = 5/305 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFALCEVKL 67
            L + P   T + +++ F + G VD A ++  +  A    C    + YN ++  L     
Sbjct: 224 QLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGE 283

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ RM R        T+  L+  + + G + +A     EM ++G  P V   + 
Sbjct: 284 LEKAAQLVDRM-RMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNT 342

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G+  +G +E+A+    +M   G + DL T+NSLI   CK+G ++  + ++  + + G
Sbjct: 343 IIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAG 402

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   V TY IL+    + G ++EA R    +VE G +P  S Y  ++ G  +        
Sbjct: 403 LAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVR 462

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            FF EM  KG  P+   Y   I+     G   EA      M   G++  +  +++  DGL
Sbjct: 463 EFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGL 522

Query: 308 KNCGK 312
              G 
Sbjct: 523 CKSGN 527



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 1/198 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + YN  L  LC+      AY L  +M+  G  PD  TY  L++A C  G++REA++   
Sbjct: 512 TVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFD 571

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P      + +      G L SA     KM+++G   +  T+N LI  +C+ G
Sbjct: 572 GMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMG 631

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 + ++ + + GL  +  TY +LI    K G  +EA RL   + + G  P    + 
Sbjct: 632 RTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHN 691

Query: 232 PIIKGMFRRGQFDDAFCF 249
            + KG F  GQ   A  +
Sbjct: 692 ALFKG-FDEGQSKHAIQY 708



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 98/231 (42%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E F++  +   Q     YN+ + A   +     A+ L   MI +G   D  TY I ++  
Sbjct: 463 EFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGL 522

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C SG +++A     +M   G  P       L+      G L  A+ + + M+  G     
Sbjct: 523 CKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSA 582

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+   I   C+ G +      +  + + G+  +  TY +LI A+ + G  + A++  H 
Sbjct: 583 VTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHE 642

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ++E G  P    Y  +I G  + G +++A   +SEM   G  P+   +  L
Sbjct: 643 MLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNAL 693



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 1/218 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  E+M    +S    T ++ ++   K G + +A  ++ K  +   Q   + Y  L+ A
Sbjct: 497 FQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHA 556

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  +   M+  G  P   TY + ++A+C  G +  A  + Q+M ++G  P 
Sbjct: 557 HCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPN 616

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++L+  L   G    A Q  ++M+++G   +  T+  LI+  CK G  E  + +Y 
Sbjct: 617 EVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYS 676

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
            + + G+  D  T+  L     + G    A + + N+V
Sbjct: 677 EMHQHGIHPDHCTHNALFKGFDE-GQSKHAIQYMENVV 713



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 9/257 (3%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A  R M   G  P  +   +++ A     +  + +    EM   G  P +   + L+   
Sbjct: 182 AAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSF 241

Query: 133 LNAGYLESAKQMVNKM-IKQGFVLDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
              G ++ A +++ +M  + G  L  + T+N +I  + + GE+E   ++   + ++   A
Sbjct: 242 FREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRM-RMSKKA 300

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              T+  LI      G +++A  L   +  +G  P    Y  II GMFR G  + A   F
Sbjct: 301 SAFTFNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKF 360

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  P+   Y  LI    + G   EA     ++   GL P    ++++ DG   C
Sbjct: 361 VEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGY--C 418

Query: 311 GKHDLAE----KIELLE 323
              DL E    K E++E
Sbjct: 419 RLGDLEEARRFKQEMVE 435


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 159/327 (48%), Gaps = 22/327 (6%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L +  N++++ Q    ++ + G++G+               C+  ++ Y+ ++  LC+ +
Sbjct: 427 LCQTGNINIALQLHQEMLNDTGRYGI--------------KCKPTLISYSIIIDGLCKDR 472

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L   M  +G +PD  +Y  L++ +C SGK  +A+    EM D G  P V    
Sbjct: 473 REDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSS 532

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+  L   G +  A +++  +I++G +LD+ T  +L++ +C    +    +++  + KL
Sbjct: 533 VLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 592

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH------KPFPSLYAPIIKGMFRR 240
           G   +V T   L+  + ++G I  A  L  N++ D        KP    Y+ II G+ + 
Sbjct: 593 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 652

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A   F EMK  G  P+   YT LI    R G++ +A     EM ++G+ P    F
Sbjct: 653 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 712

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLR 327
            ++ D L  C +  + E  ELLEV ++
Sbjct: 713 SVLIDML--CKEGKVIEANELLEVMIQ 737



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 6/278 (2%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
             NC+   + Y+ ++  LC+      A  L + M   G +PD  +Y  L++ +C SGK +
Sbjct: 632 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 691

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A+    EM D G  P V    +L+  L   G +  A +++  MI++G + +  T+ +L+
Sbjct: 692 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 751

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED--- 221
           + +C +  +    +++  + KLG   DV TY  L+  + + G I  A  L   ++ D   
Sbjct: 752 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 811

Query: 222 ---GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
                KP    Y+ II G+ + G+ D+A   F EMK  G  PN   YT LI    R G+ 
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 871

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            +A +   EM + G+   +  + ++  G    G+ D A
Sbjct: 872 EDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 10  PYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           PY ++  P  +S  +II+   K G  D A E+F +  A      V+ Y SL+   C    
Sbjct: 630 PYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 689

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  L   M+  G  PD  T+++L++  C  GK+ EA E L+ M  +G  P       
Sbjct: 690 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 749

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-- 185
           LV+GL     +  A Q+  KM K G + D+ T+ +L++ +C++G ++  +E++  +    
Sbjct: 750 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 809

Query: 186 ----LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                    DV +Y I+I  + K G  DEA  L   +   G  P    Y  +I G  R G
Sbjct: 810 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 869

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           + +DA   F+EM  +G   N   Y+++I
Sbjct: 870 KLEDAKHLFNEMVDQGVQLNAVTYSVMI 897



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 157/331 (47%), Gaps = 17/331 (5%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ + P   T  ++I+ F K G V  A E+        C   ++ Y++L+  LC      
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA----QEFLQEMSDKGFN---PPV 122
            A  L   M + G  PD   Y  L+   C +GK+  A    QE L + S  G     P V
Sbjct: 288 EATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDV 347

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+  L   G +  A +++  MI++G +LD+ T+++LI+ +C    +     ++ S
Sbjct: 348 TTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMS 407

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPFPSL--YAPIIKG 236
           + KLG   D  TY  L+  + + G I+ A +L   ++ D    G K  P+L  Y+ II G
Sbjct: 408 MQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDG 467

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           + +  + D+A   F EMK +G  P+   YT LI      G++ +A     EM ++G+ P 
Sbjct: 468 LCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPD 527

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
                ++ D L  C K  + E  +LLEV ++
Sbjct: 528 VTTSSVLIDML--CKKGKVIEANKLLEVVIQ 556



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 40/279 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+  LC VK  +   A +  ++R+G++PD  TY+I                      
Sbjct: 13  FNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSI---------------------- 50

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P V    +L+  L   G +  A +++  MI++G +LD+ T+++LI+ +C    + 
Sbjct: 51  ----RPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRIS 106

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPFPSL- 229
               ++ S+ KLG   D  TY  L+  + + G I+ A +L   ++ D    G K  P+L 
Sbjct: 107 EATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLI 166

Query: 230 -YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y+ II G+ +  + D+A   F EMK +G  P+   YT LI      G++ +A     EM
Sbjct: 167 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEM 226

Query: 289 TEMGLTPISRCFDLVTDGL---KNCGKHDLAEKIELLEV 324
            ++G+ P     D+ T G+     C +  + E  ELLEV
Sbjct: 227 LDVGIQP-----DVTTSGVLIDMFCKEGKVIEANELLEV 260



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 143/317 (45%), Gaps = 21/317 (6%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L +  N++++ Q    ++ + G++G+               C+  ++ Y+ ++  LC+ +
Sbjct: 134 LCQTGNINIALQLHQEMLNDTGRYGI--------------KCKPTLISYSIIIDGLCKDR 179

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L + M  +G +PD  +Y  L++ +C SGK  +A+    EM D G  P V    
Sbjct: 180 REDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSG 239

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+      G +  A +++  M+ +G +LD+ T+++LI+ +C    +    +++ S+ KL
Sbjct: 240 VLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKL 299

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-------KPFPSLYAPIIKGMFR 239
           G   D   Y  L+  + + G I+ A  L   ++ D         +P  +  + +I  + +
Sbjct: 300 GCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCK 359

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  +A      M  +G   +   Y+ LI       R  EA    + M ++G  P +  
Sbjct: 360 EGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAIT 419

Query: 300 FDLVTDGLKNCGKHDLA 316
           +  +  GL   G  ++A
Sbjct: 420 YGTLMKGLCQTGNINIA 436



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 141/355 (39%), Gaps = 50/355 (14%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           Y++     T S++I+   K G V  A E+        C   ++ Y++L+  LC       
Sbjct: 48  YSIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 107

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR-------------------------- 104
           A  L   M + G  PD  TY  L+   C +G +                           
Sbjct: 108 ATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLIS 167

Query: 105 ---------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                          EA+E  +EM  +G  P V     L+ G  ++G  E AK + N+M+
Sbjct: 168 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEML 227

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G   D+ T   LI+  CK G+V    E+   +   G   D+ TY  LI  +     I 
Sbjct: 228 DVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRIS 287

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-------KIKGHPPNR 262
           EA +L  ++ + G +P    Y  ++KG+ + G+ + A     EM        IK   P+ 
Sbjct: 288 EATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDV 347

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +MLI +  + G+ +EA   L  M + G       +  +  GL  C +H ++E
Sbjct: 348 TTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL--CMEHRISE 400



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/354 (22%), Positives = 144/354 (40%), Gaps = 45/354 (12%)

Query: 11  YNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y +   P  +S  +II+   K    D A E+F +  A      V+ Y +L+   C    +
Sbjct: 450 YGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKW 509

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ----------------- 111
             A  L   M+  G  PD  T ++L++  C  GK+ EA + L+                 
Sbjct: 510 EKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTL 569

Query: 112 ------------------EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
                             +M   G  P V     L++GL  +G ++ A ++   M+    
Sbjct: 570 VKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTS 629

Query: 154 VLDLE------TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
              +       +++ +I+ +CK G  +   E++  +  LG+  DV +Y  LI    ++G 
Sbjct: 630 PYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 689

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
             +A  L + +V+ G +P  + ++ +I  + + G+  +A      M  +G  PN   YT 
Sbjct: 690 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 749

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           L+       R  EA    ++M ++G  P    +  +  GL  C   ++   +EL
Sbjct: 750 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGL--CQTGNIKTALEL 801



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 11  YNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y  +  P  +S  +II+   KHG  D A E+F +  A      V+ Y SL+   C     
Sbjct: 812 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 871

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
             A  L   M+ +G   +  TY+++++ +C  G++ +A
Sbjct: 872 EDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 909


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 147/315 (46%), Gaps = 7/315 (2%)

Query: 5   IELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +E M  Y   V+P   T + ++    K   V  A +   +     C      YN+++   
Sbjct: 269 VERMGAY---VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGY 325

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+  +   A  L++  + KGFVPD+ TY  L+N  C+ G +  A E   E   K   P +
Sbjct: 326 CKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDL 385

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCVEMYY 181
              + LV+GL   G +  A Q++N+M+++G   D+ T+N +I  +CK G + +  V M  
Sbjct: 386 VVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND 445

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ K G   DV T+  LI    K   +D A +L+  +   G  P    Y  ++ G+ + G
Sbjct: 446 AIVK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG 504

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +    F EM +KG  PN   Y +LI    +  +  EA+  +V M + GL P +  F+
Sbjct: 505 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFN 564

Query: 302 LVTDGLKNCGKHDLA 316
            +  G    G  D A
Sbjct: 565 TLIHGFCRNGDLDGA 579



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 136/294 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G ++ A+E+FN+  A + +  +++YNSL+  LC   L   A  ++  M+ +G
Sbjct: 356 LINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY I++N  C  G + +A   + +   KG+ P V   + L+ G      L+SA 
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSAL 475

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+V +M   G   D+ T+NS++  +CK+G+ +   E +  +   G   +  TY ILI   
Sbjct: 476 QLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 535

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   ++EA  ++  + +DG  P    +  +I G  R G  D A+  F ++  KG+    
Sbjct: 536 CKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             + +LI           A     EM   G  P    + ++ DGL      D A
Sbjct: 596 DTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRA 649



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 127/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    K G + +A  V N          V  +N+L+   C+      A  L+ RM
Sbjct: 422 TYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 481

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  ++N  C +GK +E  E  +EM  KG  P     ++L++       L
Sbjct: 482 WTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQL 541

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M + G V D  +FN+LI   C++G+++    ++  + + G  A   T+ IL
Sbjct: 542 EEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNIL 601

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A S    +  A ++   ++  G+KP    Y  ++ G+ +    D A+   +EM  KG 
Sbjct: 602 IGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGF 661

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   +  ++ +     R  EA   +  M  MG+ P
Sbjct: 662 VPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++   + GL+ +A++V N+     C   +  YN ++  LC++     A  ++   I KG
Sbjct: 391 LVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKG 450

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           ++PD  T+  L++ +C   K+  A + ++ M   G  P V   + ++ GL  AG  +   
Sbjct: 451 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +   +MI +G   +  T+N LIE  CK  ++E    +   +C+ GL  D  ++  LI   
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G +D A+ L   L E G+      +  +I     +     A   F EM  KG+ P+ 
Sbjct: 571 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 630

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y +L+    +      A  +L EM   G  P    F  + + L     H ++E + ++
Sbjct: 631 YTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAM--NHRVSEAVAII 688

Query: 323 EVSLR 327
            + +R
Sbjct: 689 HIMVR 693



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 141/300 (47%), Gaps = 7/300 (2%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I+ + + G +  AV+ F +   F C      YN+++ AL        A+ +  RM+  G 
Sbjct: 78  IQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGV 137

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD RT+ + + ++C +G+   A   L+ +S++G +        +V+GL   G+  +A+ 
Sbjct: 138 APDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARH 197

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + ++M+ +    D+ TFN+++  +C+ G+V     +   V K G+ A+  T  I I  + 
Sbjct: 198 LFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLC 257

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + G ++EA  L+  +   G    P +  Y  +++G+ +  +  +A  +   M  +G  P+
Sbjct: 258 EDGRLEEAVALVERM---GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPD 314

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y  +I    + G   EA   L +    G  P    +  + +GL  C + D+   +EL
Sbjct: 315 DFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGL--CAEGDIERALEL 372



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 143/330 (43%), Gaps = 34/330 (10%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           P     ++     HG   NA  +F++    +    V  +N++L ALC+      + AL+ 
Sbjct: 176 PAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLA 235

Query: 77  RMIRKGF----------------------------------VPDKRTYAILVNAWCSSGK 102
           +++++G                                    PD  TY  L+   C   K
Sbjct: 236 KVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSK 295

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           ++EA ++L  M ++G  P     + ++ G   +G L+ A +++   + +GFV D  T+ S
Sbjct: 296 VQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCS 355

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           LI  +C  G++E  +E++       L  D+  Y  L+  + + G+I  A ++++ +VE+G
Sbjct: 356 LINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEG 415

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y  II G+ + G   DA    ++  +KG+ P+   +  LI    +  +   A 
Sbjct: 416 CHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSAL 475

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +  M   G+ P    ++ V +GL   GK
Sbjct: 476 QLVERMWTYGIAPDVITYNSVLNGLCKAGK 505



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 104/221 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  Y ++    T + ++    K G      E F +     C+   + YN L+   C+
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  +I RM + G VPD  ++  L++ +C +G +  A    Q++ +KG++     
Sbjct: 538 INQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADT 597

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+    +   ++ A+++  +MI +G+  DL T+  L++ +CK+  V+        + 
Sbjct: 598 FNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMI 657

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             G    ++T+  ++  ++    + EA  ++H +V  G  P
Sbjct: 658 SKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVP 698



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 107/281 (38%), Gaps = 40/281 (14%)

Query: 80  RKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           R    PD  +  Y   + A+  +G++R A +  + M      P     + ++  L+NA Y
Sbjct: 62  RSHLAPDSLQPLYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAY 121

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA------- 190
            + A ++  +M+  G   D  T    +++ C +G     + +  S+ + G  A       
Sbjct: 122 HDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCT 181

Query: 191 ----------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                                       DV+T+  ++ A+ + G + E+  LL  +++ G
Sbjct: 182 VVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRG 241

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
                      I+G+   G+ ++A      M     P      T++  +C +  +  EAA
Sbjct: 242 MSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLC-KDSKVQEAA 300

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            YL  M   G  P    ++ + DG   C    L E  ELL+
Sbjct: 301 QYLGRMMNQGCIPDDFTYNTIIDGY--CKSGMLQEATELLK 339



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 8/143 (5%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T +++I  +     +  A ++F +  +   +  +  Y  L+  LC+      AYA
Sbjct: 592 SATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYA 651

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  MI KGFVP   T+  ++N    + ++ EA   +  M   G  P V      V  +L
Sbjct: 652 HLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPEV------VDTIL 705

Query: 134 NAGYLESA--KQMVNKMIKQGFV 154
           +    E A  K +V +++K+G +
Sbjct: 706 STDKKEIAAPKILVEELMKKGHI 728


>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1016

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 140/295 (47%), Gaps = 1/295 (0%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           N  +   K    N +  ++ Y +++   C+      A AL   MI  GF+PD  TY+ +V
Sbjct: 221 NIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIV 280

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           N  C  G++ EAQE L+EM   G +P       L+  L  AG    A    ++++ +G  
Sbjct: 281 NGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMT 340

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           LDL    +L++ + KS + +   +M+ ++ KL L  +  TY  LI    K G ++    L
Sbjct: 341 LDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESL 400

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  + E    P    Y+ II G  ++G  D+A     +M  +   PN  VY +LI    +
Sbjct: 401 LQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCK 460

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            G+   A +   EM   GL   +  FD++ + LK   + D AE++ L +V+ R +
Sbjct: 461 AGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEEL-LKDVTSRGL 514



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 141/301 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +  T +++I+ + K G +DNA+E++N+  +       +  N+L+  L E      A 
Sbjct: 583 LAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIEKAM 642

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M   G  P+   + +L+NA   SGK     +  +++ D G        + L+   
Sbjct: 643 NVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVF 702

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                 + A  ++  MI+ GFV D  T+N+LI   C+S  V+  +  Y  +   G+  ++
Sbjct: 703 CRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNI 762

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY +L+  +  AG++ E   L   + E+G  P  S Y  +I G  + G   ++   + E
Sbjct: 763 VTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCE 822

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  P    Y +LI+   + G+  +A   L EM   G+ P S  +D++  G  N  K
Sbjct: 823 MVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILICGWCNLSK 882

Query: 313 H 313
           H
Sbjct: 883 H 883



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 5/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II  + K G++D A+ V  K    N      +Y  L+   C+      A  L   M
Sbjct: 415 TYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEM 474

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   +   + +LVN      +M EA+E L++++ +G          L+ G   AG  
Sbjct: 475 KLSGLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKE 534

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A  MV +M ++    D+ T+N LI  + + G+ E    +Y  + ++GL  + +TY I+
Sbjct: 535 SAALNMVEEMTEKSIPFDVVTYNVLINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIM 593

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAFCFFSEMKIK 256
           I A  K G +D A  L + +    HK  PS      ++ G+   G+ + A    +EM + 
Sbjct: 594 IKAYCKQGELDNALELWNEM--KSHKIMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVM 651

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           G  PN  ++ +L+    + G+         ++ +MGL
Sbjct: 652 GIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGL 688



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%), Gaps = 23/287 (8%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++++  C+  L + A+  +  M++K    D  T  ILV  +C  G  +  +  +  + 
Sbjct: 80  YNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGERIMDNLV 139

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G    V G + L+ G   AG +  A  +V +M K+G + D+ ++N+LI   CK GE +
Sbjct: 140 SGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLINGFCKRGEYD 199

Query: 175 FCVEMYYSVCK---------------------LGLCADVSTYKILIPAVSKAGMIDEAFR 213
               + + + +                     L L AD+ TY  +I    K   ++EA  
Sbjct: 200 KAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEADLITYTTIISTYCKQHGLEEARA 259

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++ +G  P    Y+ I+ G+ + G+  +A     EMK  G  PN   YT LI    
Sbjct: 260 LYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLREMKKMGVDPNHVAYTTLIDSLF 319

Query: 274 RGGRFVEAANYLVEMTEMGLT-PISRCFDLVTDGLKNCGKHDLAEKI 319
           + G   EA     ++   G+T  +  C  LV DGL    K   AE +
Sbjct: 320 KAGSAWEAFACQSQLVVRGMTLDLVMCTTLV-DGLFKSSKPKEAEDM 365



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 125/292 (42%), Gaps = 7/292 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY---ALIRRMI 79
           +++ F K G    A+ +  + T  +    V+ YN L+  L E    HG Y   ++   MI
Sbjct: 524 LMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNVLINGLLE----HGKYEAKSVYSGMI 579

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P++ TY I++ A+C  G++  A E   EM      P     + LV GL  AG +E
Sbjct: 580 EMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIE 639

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++N+M   G   +L     L+    KSG+    ++M+  +  +GL  +   Y  LI
Sbjct: 640 KAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLI 699

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               +  M  +A  +L  ++ DG       Y  +I+G         A   +++M  +G  
Sbjct: 700 VVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVS 759

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           PN   Y +L+      G   E      +M E GL P +  +D +  G    G
Sbjct: 760 PNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIG 811



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 142/325 (43%), Gaps = 24/325 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +N+  +    + +I  F   GLV    +++ +         V  +N L+ A C++  
Sbjct: 1   MRKHNIVPTLLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGN 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+R +       D  TY  ++  +C  G + +A  FL  M  K         ++
Sbjct: 61  LILALDLLRNV---DVEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNI 117

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV+G    G  +  +++++ ++  G   D+  FN+LI+  CK+GE+   +++   + K G
Sbjct: 118 LVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEG 177

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNL-------------VEDGHKPFPSL----- 229
           L +D+ +Y  LI    K G  D+A  LLH +             ++D  K   +L     
Sbjct: 178 LLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLNLEAD 237

Query: 230 ---YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  II    ++   ++A   + EM I G  P+   Y+ ++    + GR  EA   L 
Sbjct: 238 LITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQELLR 297

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCG 311
           EM +MG+ P    +  + D L   G
Sbjct: 298 EMKKMGVDPNHVAYTTLIDSLFKAG 322



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 12/246 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+   C +++   A ++++ MIR GFV D  TY  L+  +C S  +++A     +M 
Sbjct: 695 YNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQML 754

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G +P +   +LL+ GLL AG +    ++ +KM + G   D  T+++LI    K G  +
Sbjct: 755 NEGVSPNIVTYNLLLGGLLGAGLMAERDELFDKMKENGLNPDASTYDTLISGYGKIGNKK 814

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +Y  +   G     STY +LI   +K G +D+A  LL+ +   G  P  S Y  +I
Sbjct: 815 ESIRLYCEMVAQGFVPKTSTYNVLISDFAKVGKMDQARELLNEMQVRGVPPSSSTYDILI 874

Query: 235 KG---MFRRGQFD---------DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            G   + +    D         DA    +EM  KG  P +     + +   R G+ ++A 
Sbjct: 875 CGWCNLSKHPDLDRTLKKIYRTDAKNLITEMNDKGFVPCKSTIACISSTFARPGKMLDAE 934

Query: 283 NYLVEM 288
             L E+
Sbjct: 935 KLLKEI 940



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 56/354 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F + GL      + +   +    + V+ +N+L+   C+      A  L+ RM
Sbjct: 114 TCNILVKGFCRIGLAKYGERIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERM 173

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRGR------ 125
            ++G + D  +Y  L+N +C  G+  +A+  L E+S+         FN   R +      
Sbjct: 174 RKEGLLSDIVSYNTLINGFCKRGEYDKAKSLLHEISESRGVKDSVFFNIDDRIKKDDNLN 233

Query: 126 ---DLLVQGLLNAGY-----LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
              DL+    + + Y     LE A+ +  +MI  GF+ D+ T++S++  +CK G +    
Sbjct: 234 LEADLITYTTIISTYCKQHGLEEARALYEEMIINGFLPDVVTYSSIVNGLCKDGRLSEAQ 293

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV------------------ 219
           E+   + K+G+  +   Y  LI ++ KAG   EAF     LV                  
Sbjct: 294 ELLREMKKMGVDPNHVAYTTLIDSLFKAGSAWEAFACQSQLVVRGMTLDLVMCTTLVDGL 353

Query: 220 ---------EDGHKPFPSL--------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
                    ED  +    L        Y  +I G  + G  +       EM+ K   PN 
Sbjct: 354 FKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGYCKVGDMERVESLLQEMEEKHINPNV 413

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y+ +I    + G   EA N + +M +  + P +  + ++ DG    GK ++A
Sbjct: 414 ITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAILIDGYCKAGKQEIA 467



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 137/299 (45%), Gaps = 1/299 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N+  +    +++I+ + K G  + A +++N+      +   +L++ L+  L   K 
Sbjct: 439 MLDQNIIPNAYVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKR 498

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L++ +  +G + D   Y  L++ +  +GK   A   ++EM++K     V   ++
Sbjct: 499 MDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTYNV 558

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GLL  G  E AK + + MI+ G   +  T+N +I+  CK GE++  +E++  +    
Sbjct: 559 LINGLLEHGKYE-AKSVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHK 617

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +     T   L+  +S+AG I++A  +L+ +   G  P   ++  ++    + G+ +   
Sbjct: 618 IMPSSITCNTLVVGLSEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVL 677

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++   G   N+  Y  LI +  R     +A + L  M   G    +  ++ +  G
Sbjct: 678 QMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIRDGFVADTVTYNALIRG 736


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 149/370 (40%), Gaps = 70/370 (18%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S+  QTL   I    +   V  A+++  +     C   V  +N ++  LC+V   H A  
Sbjct: 253 SIVYQTL---IHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATK 309

Query: 74  LIRRMIRKGFVPDKRTYAIL-------------------------------VNAWCSSGK 102
           L+ RM+ +GF PD  TY  L                               +N +  SG+
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQ 369

Query: 103 MREAQEFLQE------------------------------------MSDKGFNPPVRGRD 126
           ++EAQ FL E                                    MS +G  P V    
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYA 429

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +LV GL  AG LE A  ++++M  +G  ++   +N LI  +C+  +V   + +   +C  
Sbjct: 430 ILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   D+ TY  LI  + K   IDEAFRL HN++ DG       Y  +I  + RRG F  A
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++M  +G   ++  Y  LI    + G   +      +M   GL   +   +++ +G
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMING 609

Query: 307 LKNCGKHDLA 316
           L   GK D A
Sbjct: 610 LCKVGKVDNA 619



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 128/277 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K GL++ A  V ++ +A       ++YN L+ ALC  +  H A  L+  M
Sbjct: 427 TYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEM 486

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  L+   C   ++ EA      M   G        + L+  LL  G  
Sbjct: 487 CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +VN M+ +G  LD  T+N LI+  CK G +E  +E+Y  +   GL AD  +  I+
Sbjct: 547 QKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIM 606

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D AF  L + +  G  P    Y  ++ G+ + G+  +A   F  ++++G 
Sbjct: 607 INGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGV 666

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y   I+   + G   +A  +     E G  P
Sbjct: 667 RPDAFTYNTFISWQCKEGMVNDACLFFYRGIENGFVP 703



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 1/294 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           L+ +I  +   G +  A    N+    F  Q  +  YN L+  LC+      A  L+  M
Sbjct: 357 LNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM 416

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  P+  TYAILVN  C +G + EA   L EMS +G        + L+  L     +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++++M  +G   DL T+NSLI  +CK   ++    +++++   G  A+  TY  L
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G   +A  L+++++  G       Y  +IK   + G  +     + +M + G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +     ++I    + G+   A  +L +    G  P    ++ V +GL   G+
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 112/262 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+++    + +I    +   V  A+ + ++     C+  +  YNSL++ LC+V  
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDR 510

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M+  G V +  TY  L++A    G  ++A   + +M  +G        + 
Sbjct: 511 IDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++     G +E   ++  +MI  G   D  + N +I  +CK G+V+   E        G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D+ TY  ++  + K G I EA  L   L  +G +P    Y   I    + G  +DA 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 248 CFFSEMKIKGHPPNRPVYTMLI 269
            FF      G  P+   + +L+
Sbjct: 691 LFFYRGIENGFVPSNLTWNVLV 712



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 105/221 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A  +F+           + YN+L+ AL     F  A  L+  M+ +G   DK TY  
Sbjct: 511 IDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A+C  G + +  E  ++M   G        ++++ GL   G +++A + +   I +G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           FV D+ T+NS++  +CK G ++  + ++  +   G+  D  TY   I    K GM+++A 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
              +  +E+G  P    +  ++  + ++   ++ F    E+
Sbjct: 691 LFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF    +      V  +  ++ ALC       A +L+R M + G VP+   Y  L++
Sbjct: 202 ATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIH 261

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A     ++ EA + L+EM   G  P V+  + ++ GL     +  A ++V++M+ +GF  
Sbjct: 262 ALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYP 321

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+  L+  +C+ G++    ++   +     C + +    LI     +G + EA   L
Sbjct: 322 DNMTYGFLLHGLCRIGKLNEARKILIKIP----CPNNAILNTLINGYVMSGQLKEAQSFL 377

Query: 216 H-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           +  ++  G +P    Y  ++ G+ + G    A    +EM  +G  PN   Y +L+    +
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G   EA   L EM+  GLT  S  ++ +   L  C K  +   + LL 
Sbjct: 438 AGLLEEAGLVLHEMSARGLTINSVIYNCLICAL--CRKEKVHVALNLLS 484



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 1/216 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPPVRGRDLLVQGL 132
           L+ +M  +G V  +  + I++  +  +G+  +A   L +M       P  +  DL+++ L
Sbjct: 134 LLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEIL 193

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           +     + A  +   M+ +G    + TF  +++ +C   EV+    +   + K G   + 
Sbjct: 194 VTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNS 253

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y+ LI A+S+   + EA +LL  +   G  P    +  +I G+ +  +  DA      
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDR 313

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           M ++G  P+   Y  L+    R G+  EA   L+++
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 133/268 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y +++ + C+ KL   AY L   MI K   P+  T+  L+  +C  G+++EA   L 
Sbjct: 194 VIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLN 253

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EMS    NP V   ++L+ GL   G ++ A  +++ MIKQG   ++ T+ SL++      
Sbjct: 254 EMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVK 313

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV     ++ ++   G+  +V +Y ++I  + K  M+DEA +L   +      P    Y+
Sbjct: 314 EVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYS 373

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+  D +    E+  +G P N   Y  L+    +  +  +A   L +M + 
Sbjct: 374 SLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDE 433

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + DGL   G+   A++I
Sbjct: 434 GIQPDMSTYTTLVDGLCKNGRLKDAQRI 461



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 149/301 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F   G +  AV + N+ +  N    V  +N L+  LC+      A +++  M
Sbjct: 231 TFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVM 290

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G  P+  TY  L++ +    ++ +A+     +S +G  P V    +++ GL     +
Sbjct: 291 IKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMV 350

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +M  +    +  T++SLI+ +CKSG +    ++   +   G  A++ TY  L
Sbjct: 351 DEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSL 410

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   +D+A  LL  + ++G +P  S Y  ++ G+ + G+  DA   + ++  KG+
Sbjct: 411 LNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGY 470

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           P N  +YT++I    + G F EA + L +M + G  P +  ++ +   L    K+  A K
Sbjct: 471 PLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVK 530

Query: 319 I 319
           +
Sbjct: 531 L 531



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 136/281 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N++ +  T +++I+   K G V  A  V +       +  V+ Y SL+     VK 
Sbjct: 255 MSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  +   +  +G  P+  +Y++++N  C +  + EA +  +EM  K   P       
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  +G +     +++++  +G   ++ T+NSL+  +CK+ +V+  + +   +   G
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+STY  L+  + K G + +A R+  +L+  G+     +Y  +I G+ + G FD+A 
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEAL 494

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              S+M+  G  P+   Y  LI+   +  +  +A   L EM
Sbjct: 495 SLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 127/276 (46%), Gaps = 2/276 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQC-VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           +D+AV  FN     N     +  +N +L +L ++  F  A +  ++M  KG  P+  T+ 
Sbjct: 33  LDDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFN 92

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +    ++  A   + ++   G+ P     + L++GL   G ++ A    + +I++
Sbjct: 93  ILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRK 152

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAGMIDE 210
            F LD  ++ +LI  +CKSGE    +++   +  L L   DV  Y  +I +  K  ++ +
Sbjct: 153 RFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ L   ++     P    +  +I G    GQ  +A    +EM +    PN   + +LI 
Sbjct: 213 AYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILID 272

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              + G   +A + L  M + G+ P    +  + DG
Sbjct: 273 GLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG 308



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 2/207 (0%)

Query: 15  VSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   + S++I    K+ +VD AV++F +    N     + Y+SL+  LC+       +
Sbjct: 330 VTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVW 389

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            LI  +  +G   +  TY  L+N  C + ++ +A   L +M D+G  P +     LV GL
Sbjct: 390 DLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGL 449

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A+++   ++ +G+ L++  +  +I  +CK G  +  + +   +   G   D 
Sbjct: 450 CKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDA 509

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLV 219
            TY+ LI A+ K     +A +LL  ++
Sbjct: 510 VTYETLISALFKNNKNGKAVKLLREMI 536



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 64/151 (42%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ +       +  T + ++    K+  VD A+ +  K      Q  +  Y +L+ 
Sbjct: 388 VWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVD 447

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A  + + ++ KG+  + R Y +++N  C  G   EA   L +M D G  P
Sbjct: 448 GLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMP 507

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                + L+  L        A +++ +MI +
Sbjct: 508 DAVTYETLISALFKNNKNGKAVKLLREMIAR 538


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  124 bits (311), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 152/338 (44%), Gaps = 37/338 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G   NA+ V +      C   V+ Y  LL A C+   +  A  L+  M
Sbjct: 158 TYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 217

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P     +++++GL  A   
Sbjct: 218 RAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERW 277

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE-------------------M 179
           E A++++ +M ++G+  ++ TFN LI  +C+ G VE  +E                   +
Sbjct: 278 EDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPI 337

Query: 180 YYSVCK----------------LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
            ++ CK                 G   D+ +Y  L+ A+ + G +D A  LLH L + G 
Sbjct: 338 LHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGC 397

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I G+ + G+  +A    +EM  KG  P+   Y+ + +   R  R  EA  
Sbjct: 398 TPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIR 457

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              ++ +MG+ P +  ++ +  GL  C + +    I+L
Sbjct: 458 AFCKVQDMGIRPNTVLYNAILLGL--CKRRETHNAIDL 493



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 140/290 (48%), Gaps = 2/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    + G VD+A+E      +  C+   + YN +L  LC  + +  A  L+  M
Sbjct: 228 TYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEM 287

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG+ P+  T+ +L++  C  G +  A E L ++   G  P     + ++        +
Sbjct: 288 SQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKM 347

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   V  M+ +G   D+ ++N+L+  +C+ GEV+  VE+ + +   G    + +Y  +
Sbjct: 348 DRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 407

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++KAG   EA  LL+ +V  G +P    Y+ I  G+ R  + ++A   F +++  G 
Sbjct: 408 IDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGI 467

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN  +Y  +L+ +C R      A +  + M   G  P    + ++ +GL
Sbjct: 468 RPNTVLYNAILLGLCKRRETH-NAIDLFIYMISNGCMPNESTYTILIEGL 516



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 118/239 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV ++   + C    L YN +L A C+ K    A A +  M
Sbjct: 298 TFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 357

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C  G++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 358 VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 417

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M+ +G   D+ T++++   +C+   +E  +  +  V  +G+  +   Y  +
Sbjct: 418 KEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAI 477

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  + K      A  L   ++ +G  P  S Y  +I+G+   G   +A     E+  +G
Sbjct: 478 LLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRG 536



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 147/355 (41%), Gaps = 45/355 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M     S +P   + +I++    G    A  V   C     +  V+ YN+++   
Sbjct: 80  RLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAAC-----EPDVMAYNAMVAGY 134

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M  +   PD  TY  L+   C  G+   A   L +M  +G  P V
Sbjct: 135 CVTGQLDAARRLVADMPME---PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDV 191

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE---- 178
               +L++        + A +++++M  +G   D+ T+N ++  IC+ G V+  +E    
Sbjct: 192 VTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKS 251

Query: 179 ----------MYYSVCKLGLCA---------------------DVSTYKILIPAVSKAGM 207
                     + Y++   GLC                      +V T+ +LI  + + G+
Sbjct: 252 LPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGL 311

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           ++ A  +L  + + G  P    Y PI+    ++ + D A  F   M  +G  P+   Y  
Sbjct: 312 VEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNT 371

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           L+T   RGG    A   L ++ + G TP+   ++ V DGL   GK    E +ELL
Sbjct: 372 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTK--EALELL 424



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 5/213 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     I+  F K   +D A+       +  C   ++ YN+LL ALC      
Sbjct: 329 PNSLSYNP-----ILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVD 383

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   +Y  +++    +GK +EA E L EM  KG  P +     + 
Sbjct: 384 AAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTIS 443

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL     +E A +   K+   G   +   +N+++  +CK  E    ++++  +   G  
Sbjct: 444 SGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCM 503

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            + STY ILI  ++  G++ EA  LL  L   G
Sbjct: 504 PNESTYTILIEGLTYEGLVKEARELLGELCSRG 536


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 157/313 (50%), Gaps = 2/313 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+    T + +I+ +GK GL+D +  +F +     C+  V+ YN+L+   C+ + 
Sbjct: 278 MKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQ 337

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+  +  M   G  P+  TY+ L++A C    +++A +FL +M   G +P       
Sbjct: 338 MPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTS 397

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AGYL  A ++ ++M++     ++ T+ +L++ +CK G +    +++ ++ K G
Sbjct: 398 LIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAG 457

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  ++ TY  L+    K   ++ A  LL  + E   KP   LY  II G+  + + ++  
Sbjct: 458 VTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECE 517

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              SEMK  G   N  +YT+ +    + G+ VEA N L EM ++G+      F ++ DGL
Sbjct: 518 FVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGL 577

Query: 308 KNCGKHDLAEKIE 320
             C K  + E I+
Sbjct: 578 --CKKGLVEEAID 588



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 128/310 (41%), Gaps = 6/310 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W T  +  P    V     S+ IE     G+++ A + F++ T F         N+ L+
Sbjct: 171 LWSTRNVCVP-GFGVFDALFSVFIE----LGMLEEAGQCFSRMTRFRVFPKARSCNAFLY 225

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +      +    R M+  G      TY I++   C  G M  A+    +M   G  P
Sbjct: 226 RLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTP 285

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + L+ G    G L+ +  +  +M   G   D+ T+N+LI   CK  ++       
Sbjct: 286 DIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFL 345

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           + +   GL  +V TY  LI A+ K  M+ +A + L ++   G  P    Y  +I    + 
Sbjct: 346 HEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKA 405

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G   DA     EM       N   YT L+    + GR +EA +    M + G+TP  + +
Sbjct: 406 GYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTY 465

Query: 301 DLVTDG-LKN 309
             +  G +KN
Sbjct: 466 TALVHGHIKN 475



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 2/244 (0%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VP    +  L + +   G + EA +    M+     P  R  +  +  L   G  + + +
Sbjct: 179 VPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNK 238

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
               M+  G    + T+N +I  +CK G++     +++ + ++GL  D+ TY  LI    
Sbjct: 239 FFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYG 298

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G++DE+F L   + + G +P    Y  +I    +  Q   AF F  EMK  G  PN  
Sbjct: 299 KLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVV 358

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            Y+ LI    +     +A  +L++M  +GL+P    +  + D   NC    L++ ++L +
Sbjct: 359 TYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDA--NCKAGYLSDALKLAD 416

Query: 324 VSLR 327
             L+
Sbjct: 417 EMLQ 420



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 115/266 (43%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++++L     E+ +   A     RM R    P  R+    +     +GK   + +F ++M
Sbjct: 184 VFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDM 243

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G    V   ++++  +   G + +AK + ++M + G   D+ T+NSLI+   K G +
Sbjct: 244 VGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLL 303

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +    ++  +  +G   DV TY  LI    K   + +AF  LH +   G KP    Y+ +
Sbjct: 304 DESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTL 363

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + +      A  F  +M+  G  PN   YT LI    + G   +A     EM ++ +
Sbjct: 364 IDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQV 423

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
                 +  + DGL   G+   AE +
Sbjct: 424 GFNVVTYTTLLDGLCKEGRMMEAEDL 449



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 1/287 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +  T + +I+   K G + +A+++ ++         V+ Y +LL  LC+   
Sbjct: 383 MRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGR 442

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L R MI+ G  P+ +TY  LV+    + ++  A E L+E+ +K   P +     
Sbjct: 443 MMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGT 502

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL +   LE  + ++++M   G   +   +   ++   K+G+    + +   +C LG
Sbjct: 503 IIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLG 562

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP-SLYAPIIKGMFRRGQFDDA 246
           +   + T+ +LI  + K G+++EA      + +   +P   ++   +I G+ +    + A
Sbjct: 563 VEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAA 622

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              F EM+ K   P++  YT LI    +   F EA N    M+E+G+
Sbjct: 623 KKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGM 669



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 78/174 (44%), Gaps = 1/174 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ-QCVLLYNSLLFALCEVKLFHGA 71
           + V+  T  ++I+   K GLV+ A++ F +   FN Q   V +  +L+  LC+      A
Sbjct: 563 VEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAA 622

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   M  K  VPDK  Y  L++        +EA      MS+ G    +     LV G
Sbjct: 623 KKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWG 682

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           L     ++ A+  +N+MI +G V D      L+    + G ++  +E++  + K
Sbjct: 683 LSQGNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLK 736


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VFN  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 128 FNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 187

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM DKG  P       L+ G   +G ++
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVD 247

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 248 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G++ DA     EM   G  
Sbjct: 308 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLK 367

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G     +  L EM   G  P    ++++ +G
Sbjct: 368 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 127 FFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 186

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CKSG V
Sbjct: 187 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRV 246

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 247 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +   YT LI+   + GR+++A   L EM   GL
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGL 366

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+    +LL+
Sbjct: 367 KPDTGTYTMIINEF--CKKGDVWTGSKLLK 394



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 120/262 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+   
Sbjct: 151 ITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK 210

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+ KG VP+  T+  L++  C SG++  A E  ++M  +  +P +   + 
Sbjct: 211 MDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNT 270

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G++E   E    + +  
Sbjct: 271 LIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEN 330

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G      
Sbjct: 331 IRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGS 390

Query: 248 CFFSEMKIKGHPPNRPVYTMLI 269
               EM+  GH P+   Y +L+
Sbjct: 391 KLLKEMQRDGHVPSVVTYNVLM 412



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  + ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 96  VLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWG 155

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M   G   D+ T++ LI  +CK  +++   
Sbjct: 156 LRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDAN 215

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K+G +D A  +   ++     P    Y  +I G+
Sbjct: 216 ELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 276 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDD 335

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G++  AEK+  E+L   L+
Sbjct: 336 VAYTALISGLCQEGRYLDAEKVLREMLSAGLK 367



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 197 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 257 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 316

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +   +MI++   LD   + +LI  +C+ G      ++   +   GL  D  TY ++
Sbjct: 317 ETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMI 376

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G +    +LL  +  DGH P    Y  ++ G
Sbjct: 377 INEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 115/246 (46%), Gaps = 3/246 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ ++   Y +     
Sbjct: 53  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGF 112

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V ++  L+    +
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIR 172

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   +   G +P    Y+ +I G+ +  + DDA   F EM  KG  PN   
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVT 232

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-E 323
           +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E
Sbjct: 233 FTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHDLIDE 290

Query: 324 VSLRSV 329
           +S++ +
Sbjct: 291 MSMKGL 296


>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 638

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 148/312 (47%), Gaps = 2/312 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   + P+   ++++ F    +V  A+EV ++   F  +    ++  LL
Sbjct: 167 VWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLL 226

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A  L   M R  F  + R +  L+  WC   KM EA+  L +M + GF 
Sbjct: 227 DALCKHGSVKDAAKLFEDM-RLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFE 285

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +     L+ G  NAG +  A  ++  M ++GF  +   +  LI+ +CK   +E  +++
Sbjct: 286 PDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKV 345

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + +    ADV TY  L+    K G ID+ + +L ++++ G  P    Y  I+    +
Sbjct: 346 FVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIKKGLMPSQLTYMHIMAAHEK 405

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + +  +      +MK   + P+  +Y ++I +  + G   EA     EM   GL+P +  
Sbjct: 406 KEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADT 465

Query: 300 FDLVTDGLKNCG 311
           F ++ +GL + G
Sbjct: 466 FVIIINGLTSQG 477



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 106/255 (41%), Gaps = 38/255 (14%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+   K   ++ A++VF +   + C+  V+ Y +L+   C+       Y ++  MI+
Sbjct: 327 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYLVLDDMIK 386

Query: 81  KGFVPDKRTYA-----------------------------------ILVNAWCSSGKMRE 105
           KG +P + TY                                    +++   C  G+++E
Sbjct: 387 KGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACKLGEVKE 446

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF--VLDLETFNSL 163
           A     EM   G +P      +++ GL + G L  A     +M+ +G   V    T   L
Sbjct: 447 AVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMVARGLFSVPQYGTLKLL 506

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           + T+ K  ++E   +++  +   G C   VS++ I I A+   G   EA      ++E  
Sbjct: 507 LNTLLKDKKLEMAKDVWSCITSKGSCELSVSSWTIWIHALFSKGYEKEACSYCLEMIELE 566

Query: 223 HKPFPSLYAPIIKGM 237
             P P  +A ++KG+
Sbjct: 567 FMPQPDTFAKLMKGL 581



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 3/127 (2%)

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +L+   + A M+ +A  +L  +   G +P   ++  ++  + + G   DA   F +M+++
Sbjct: 189 VLVQRFASADMVKKAIEVLDEMPTFGLEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRLR 248

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P N   +T L+    R  + +EA   LV+M E G  P    +  +  G  N GK  +A
Sbjct: 249 -FPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGK--MA 305

Query: 317 EKIELLE 323
           +  +LL+
Sbjct: 306 DAYDLLK 312


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 149/370 (40%), Gaps = 70/370 (18%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S+  QTL   I    +   V  A+++  +     C   V  +N ++  LC+V   H A  
Sbjct: 253 SIVYQTL---IHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATK 309

Query: 74  LIRRMIRKGFVPDKRTYAIL-------------------------------VNAWCSSGK 102
           L+ RM+ +GF PD  TY  L                               +N +  SG+
Sbjct: 310 LVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQ 369

Query: 103 MREAQEFLQE------------------------------------MSDKGFNPPVRGRD 126
           ++EAQ FL E                                    MS +G  P V    
Sbjct: 370 LKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYA 429

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +LV GL  AG LE A  ++++M  +G  ++   +N LI  +C+  +V   + +   +C  
Sbjct: 430 ILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTK 489

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   D+ TY  LI  + K   IDEAFRL HN++ DG       Y  +I  + RRG F  A
Sbjct: 490 GCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKA 549

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               ++M  +G   ++  Y  LI    + G   +      +M   GL   +   +++ +G
Sbjct: 550 LTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMING 609

Query: 307 LKNCGKHDLA 316
           L   GK D A
Sbjct: 610 LCKVGKVDNA 619



 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 129/277 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K GL++ A  V ++ +A       ++YN L+ ALC  +  H A  L+  M
Sbjct: 427 TYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEM 486

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  L+   C   ++ EA      M   G        + L+  LL  G  
Sbjct: 487 CTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAF 546

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +VN M+ +G  LD  T+N LI+  CK G +E  +E+Y  +   GL AD  +  I+
Sbjct: 547 QKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIM 606

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D AF  L + +  G  P    Y  ++ G+ + G+  +A   F  ++++G 
Sbjct: 607 INGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGV 666

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y   I+   + G   +A ++     E G  P
Sbjct: 667 RPDAFTYNTFISWQCKEGMVNDACSFFYRGIENGFVP 703



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 1/294 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           L+ +I  +   G +  A    N+    F  Q  +  YN L+  LC+      A  L+  M
Sbjct: 357 LNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM 416

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  P+  TYAILVN  C +G + EA   L EMS +G        + L+  L     +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSARGLTINSVIYNCLICALCRKEKV 476

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++++M  +G   DL T+NSLI  +CK   ++    +++++   G  A+  TY  L
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G   +A  L+++++  G       Y  +IK   + G  +     + +M + G 
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +     ++I    + G+   A  +L +    G  P    ++ V +GL   G+
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGR 650



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 112/262 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+++    + +I    +   V  A+ + ++     C+  +  YNSL++ LC+V  
Sbjct: 451 MSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDR 510

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M+  G V +  TY  L++A    G  ++A   + +M  +G        + 
Sbjct: 511 IDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++     G +E   ++  +MI  G   D  + N +I  +CK G+V+   E        G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D+ TY  ++  + K G I EA  L   L  +G +P    Y   I    + G  +DA 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 248 CFFSEMKIKGHPPNRPVYTMLI 269
            FF      G  P+   + +L+
Sbjct: 691 SFFYRGIENGFVPSNLTWNVLV 712



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 105/221 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A  +F+           + YN+L+ AL     F  A  L+  M+ +G   DK TY  
Sbjct: 511 IDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNG 570

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A+C  G + +  E  ++M   G        ++++ GL   G +++A + +   I +G
Sbjct: 571 LIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRG 630

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           FV D+ T+NS++  +CK G ++  + ++  +   G+  D  TY   I    K GM+++A 
Sbjct: 631 FVPDIVTYNSVLNGLCKVGRIKEALNLFDRLQVEGVRPDAFTYNTFISWQCKEGMVNDAC 690

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
              +  +E+G  P    +  ++  + ++   ++ F    E+
Sbjct: 691 SFFYRGIENGFVPSNLTWNVLVYTLLKQSNQENNFFVLDEL 731



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 129/289 (44%), Gaps = 7/289 (2%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF    +      V  +  ++ ALC       A +L+R M + G VP+   Y  L++
Sbjct: 202 ATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIH 261

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A     ++ EA + L+EM   G  P V+  + ++ GL     +  A ++V++M+ +GF  
Sbjct: 262 ALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYP 321

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+  L+  +C+ G++    ++   +     C + +    LI     +G + EA   L
Sbjct: 322 DNMTYGFLLHGLCRIGKLNEARKILIKI----PCPNNAILNTLINGYVMSGQLKEAQSFL 377

Query: 216 H-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           +  ++  G +P    Y  ++ G+ + G    A    +EM  +G  PN   Y +L+    +
Sbjct: 378 NETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCK 437

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G   EA   L EM+  GLT  S  ++ +   L  C K  +   + LL 
Sbjct: 438 AGLLEEAGLVLHEMSARGLTINSVIYNCLICAL--CRKEKVHVALNLLS 484



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 1/216 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPPVRGRDLLVQGL 132
           L+ +M  +G V  +  + I++  +  +G+  +A   L +M       P  +  DL+++ L
Sbjct: 134 LLMQMKEEGIVFRESIFMIIMKHYGKAGQPGQAIRLLLDMRAVYLCEPTFKSYDLVLEIL 193

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           +     + A  +   M+ +G    + TF  +++ +C   EV+    +   + K G   + 
Sbjct: 194 VTGNCPQVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNS 253

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y+ LI A+S+   + EA +LL  +   G  P    +  +I G+ +  +  DA      
Sbjct: 254 IVYQTLIHALSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDR 313

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           M ++G  P+   Y  L+    R G+  EA   L+++
Sbjct: 314 MLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKI 349


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 142/291 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G +  A ++F++    +    ++ YNSL+   C       A  +   M
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 371

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K  +PD  TY  L+N +C + K+ +  E  ++MS +G          L+ G   A   
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+ +  +M+  G   ++ T+N+L++ +CK+G++E  + ++  + K  +  D+ TY I+
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              + KAG +++ + L  +L   G KP    Y  +I G  ++G  ++A+  F +MK  G 
Sbjct: 492 SEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y  LI    R G    +A  + EM        +  + LVTD L +
Sbjct: 552 LPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLHD 602



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 134/287 (46%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+   K+  VD+A+ +F +      +  V  Y+SL+  LC    +  A  L+  M+ 
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P+  T+  L++A+   GK+ EA++   EM  +  +P +   + L+ G      L+ 
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+Q+   M+ +  + D+ T+N+LI   CK+ +V   +E++  + + GL  +  TY  LI 
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIH 423

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              +A   D A  +   +V DG  P    Y  ++ G+ + G+ + A   F  ++     P
Sbjct: 424 GFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP 483

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +   Y ++     + G+  +  +    ++  G+ P    ++ +  G 
Sbjct: 484 DIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGF 530



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 120/264 (45%), Gaps = 2/264 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T + +I  F  H  +D A ++F    + +C   V+ YN+L+   C+ K     
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDG 399

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M R+G V +  TY  L++ +  +     AQ   ++M   G +P +   + L+ G
Sbjct: 400 MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDG 459

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G LE A  +   + K     D+ T+N + E +CK+G+VE   +++ S+   G+  D
Sbjct: 460 LCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  Y  +I    K G+ +EA+ L   + EDG  P    Y  +I+   R G    +     
Sbjct: 520 VIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIK 579

Query: 252 EMKIKGHPPNRPVYTMLITMCGRG 275
           EM+      +   Y ++  M   G
Sbjct: 580 EMRSCRFAGDASTYGLVTDMLHDG 603



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 133/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G  D A+ + NK      +  V++Y++++ +LC+ +    A  L   M
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ L++  C+ G+  +A   L +M ++  NP V   + L+      G L
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MI++    ++ T+NSLI   C    ++   +++  +       DV TY  L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  + +   L  ++   G       Y  +I G F+    D+A   F +M   G 
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN   Y  L+    + G+  +A      + +  + P    ++++++G+   GK
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGK 500



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 126/271 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  LC       A A++ +M++ G+ P   T   L+N +C   ++ EA   + +M 
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P       LV GL        A  +V +M+ +G   DL T+ ++I  +CK GE +
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + ADV  Y  +I ++ K   +D+A  L   +   G +P    Y+ +I
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  +   PN   +  LI    + G+ +EA     EM +  + 
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           P    ++ + +G     + D A++I  L VS
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 373



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 140/299 (46%), Gaps = 2/299 (0%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           H  +D AV++F +         ++ ++ LL A+ ++K F    +   +M   G   +  T
Sbjct: 43  HLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYT 102

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y I++N  C   ++  A   L +M   G+ P +   + L+ G  +   +  A  +V++M+
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G+  D  TF +L+  + +  +    V +   +   G   D+ TY  +I  + K G  D
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 222

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  LL+ + +   +    +Y+ +I  + +    DDA   F+EM  KG  P+   Y+ LI
Sbjct: 223 LALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI 282

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
           +     GR+ +A+  L +M E  + P    F+ + D     GK   AEK+  E+++ S+
Sbjct: 283 SCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI 341



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 2/317 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +S +  T +++I    +   +  A+ +  K         ++  NSLL   C  
Sbjct: 89  EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL+ +M+  G+ PD  T+  LV+      K  EA   ++ M  KG  P +   
Sbjct: 149 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL   G  + A  ++NKM K     D+  ++++I+++CK   V+  + ++  +  
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  +   G   +A RLL +++E    P    +  +I    + G+  +
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIE 328

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F EM  +   PN   Y  LI       R  EA      M      P    ++ + +
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query: 306 GLKNCGKHDLAEKIELL 322
           G   C    + + +EL 
Sbjct: 389 GF--CKAKKVVDGMELF 403



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 124/301 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++  F     +  AV + ++      Q   + + +L+  L +      A AL+ RM
Sbjct: 137 TLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERM 196

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY  ++N  C  G+   A   L +M        V     ++  L    ++
Sbjct: 197 VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHV 256

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M  +G   D+ T++SLI  +C  G       +   + +  +  +V T+  L
Sbjct: 257 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSL 316

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K G + EA +L   +++    P    Y  +I G     + D+A   F+ M  K  
Sbjct: 317 IDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDC 376

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI    +  + V+      +M+  GL   +  +  +  G       D A+ 
Sbjct: 377 LPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQM 436

Query: 319 I 319
           +
Sbjct: 437 V 437


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 140/301 (46%), Gaps = 2/301 (0%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP  LS  L+I+   K GLVD A+EVF +     C+  V  Y +L+  LC+      A
Sbjct: 183 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 242

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+  M  +G  P   T+ +L+N  C  G M    + +  M  KG  P     + ++ G
Sbjct: 243 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 302

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G L+ A  ++++M+    V +  T+ +LI  + K G     V +  S+ + G  A+
Sbjct: 303 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 362

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI  + K    +EA  L   +VE G +P   +Y+ +I G+ R G+ D+A     
Sbjct: 363 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 422

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  PN   Y+ LI    + G   +A     EM +    P   C+ ++  GL   G
Sbjct: 423 EMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDG 482

Query: 312 K 312
           K
Sbjct: 483 K 483



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 147/322 (45%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLL 59
           +++  + MK        +   L+   +GK  L + A+E+F +    F C++ V  +NS+L
Sbjct: 99  LFQVFDRMKRERRVFIEKNFILVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVL 158

Query: 60  FALCEVKLFHGAYALIRRMI--RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
             + +  LFH A       +  +    P+  ++ +++ A C  G +  A E  +EM+ + 
Sbjct: 159 NVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQK 218

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V     L+ GL     ++ A  ++++M  +G      TFN LI  +CK G++    
Sbjct: 219 CEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVT 278

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           ++  ++   G   +  TY  +I  +   G +D+A  LL  +V     P    Y  +I G+
Sbjct: 279 KLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGL 338

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G+  D     S ++ +GH  N   Y+ LI+   +  +  EA     +M E G  P  
Sbjct: 339 VKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNI 398

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             +  + DGL   GK D A++I
Sbjct: 399 VVYSALIDGLCREGKLDEAKEI 420



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 133/313 (42%), Gaps = 4/313 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T +++I    K G +    ++ +      C    + YN+++  LC       A +L+
Sbjct: 257 SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLL 316

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            RM+    VP+  TY  L+N     G+  +    L  + ++G +        L+ GL   
Sbjct: 317 DRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKE 376

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
              E A  +  KM+++G   ++  +++LI+ +C+ G+++   E+   +   G   +  TY
Sbjct: 377 EKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTY 436

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G   +A R+   + ++   P    Y+ +I G+   G+  +A   ++ M  
Sbjct: 437 SSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLG 496

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM--TEMGLTPISRCFDLVTDGLKNCGKH 313
           +G  P+   Y+ +I      G          EM   E    P    ++++   L  C ++
Sbjct: 497 RGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRAL--CKQN 554

Query: 314 DLAEKIELLEVSL 326
            ++  I+LL   L
Sbjct: 555 SISHAIDLLNSML 567



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II      G +D AV + ++  A  C    + Y +L+  L +         L+  +
Sbjct: 295 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 354

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   ++  Y+ L++      K  EA    ++M +KG  P +     L+ GL   G L
Sbjct: 355 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 414

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK+++ +M+ +G   +  T++SLI+   K+G  +  + ++  + K     +   Y +L
Sbjct: 415 DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVL 474

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM--KIK 256
           I  + + G + EA  +  +++  G +P    Y+ +I G+   G  +     F+EM  +  
Sbjct: 475 IHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQES 534

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              P+   Y +L+    +      A + L  M + G  P     DL+T
Sbjct: 535 DSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNP-----DLIT 577



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 16/251 (6%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+   + G +D A E+  +     C      Y+SL+    +      A  + + M +
Sbjct: 402 SALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 461

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
              VP++  Y++L++  C  GK+REA      M  +G  P V     ++ GL NAG +E 
Sbjct: 462 NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEV 521

Query: 141 AKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             ++ N+M+ Q      D+ T+N L+  +CK   +   +++  S+   G   D+ T  I 
Sbjct: 522 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 581

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +           A R   N  +DG +    L    +  + +R +   A      M  K  
Sbjct: 582 L----------NALREKLNPPQDGREFLDEL----VVRLHKRQRIVGAAKIIEVMLQKFL 627

Query: 259 PPNRPVYTMLI 269
           PPN   +  +I
Sbjct: 628 PPNASTWERII 638



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           S +I      G V+  +++FN+  C   + Q  V+ YN LL ALC+      A  L+  M
Sbjct: 507 SSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSM 566

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR---DLLVQGLLNA 135
           + +G  PD  T  I +NA      +RE             NPP  GR   D LV  L   
Sbjct: 567 LDRGCNPDLITCNIFLNA------LREK-----------LNPPQDGREFLDELVVRLHKR 609

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             +  A +++  M+++    +  T+  +I  +CK  +V+  ++  +S
Sbjct: 610 QRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWS 656


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 137/291 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K G +  A +++N+      +   + YNSL++ LC  K    A  ++  M
Sbjct: 337 TFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLM 396

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  TY IL+N +C + ++ +     ++MS +G          L+QG   +  L
Sbjct: 397 VSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKL 456

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M+ QG    + T+  L++ +C +GE+E  + +   + K  +  D+  Y I+
Sbjct: 457 IVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNII 516

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +  A  +D+A+ L  +L   G K     Y  ++ G+ +R    +A   F +MK  G+
Sbjct: 517 IHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGY 576

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y  LI    RG     +   + EM   G +  +    +V D L +
Sbjct: 577 EPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSS 627



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 143/299 (47%), Gaps = 2/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+   K G +D+A+  F++      +  V  YNSL+ + C    +     L+R M
Sbjct: 267 TYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDM 326

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  T++ L+++    GK+ EA++   EM  +G  P     + L+ GL N   L
Sbjct: 327 ITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRL 386

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A QM++ M+ +G   D+ T+N LI   CK+ +V+  + ++  +   G+ AD  TY  L
Sbjct: 387 DEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTL 446

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    ++  +  A ++   +V  G  P    YA ++ G+   G+ ++A     +M     
Sbjct: 447 IQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKM 506

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             +  +Y ++I       +  +A +    +   G+    + ++++  GL  C +  L+E
Sbjct: 507 ELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGL--CKRSSLSE 563



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ I+        V  AV++  +  A  CQ     Y  +L  +C+      A  L+R+M
Sbjct: 197 TLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P   TY I+++  C  G++ +A  F  EM  KG    V   + L+    + G  
Sbjct: 257 EHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRW 316

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   Q++  MI +    ++ TF++LI+++ K G++    ++Y  +   G+  +  TY  L
Sbjct: 317 DDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSL 376

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +     +DEA +++  +V  G  P    Y  +I G  +  Q DD    F +M ++G 
Sbjct: 377 IYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGM 436

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y+ LI    +  + + A     EM   G+ P    + ++ DGL  C   +L E 
Sbjct: 437 IADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGL--CDNGELEEA 494

Query: 319 IELLE 323
           + +L+
Sbjct: 495 LGILD 499



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A ++ +   +  C   +  YN L+   C+ K       L R+M  +G + D  TY+ 
Sbjct: 386 LDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYST 445

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+  +C S K+  A++  QEM  +G +P +    +L+ GL + G LE A  ++++M K  
Sbjct: 446 LIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCK 505

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD+  +N +I  +C + +V+    ++ S+   G+  D+ +Y I++  + K   + EA 
Sbjct: 506 MELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEAD 565

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + EDG++P    Y  +I+   R      +     EMK  G   +     +++ M 
Sbjct: 566 ALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDML 625

Query: 273 GRG 275
             G
Sbjct: 626 SSG 628



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 126/288 (43%), Gaps = 4/288 (1%)

Query: 29  KHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           + GLVD    +AV +F           V+ +N L   L   K +    AL ++M  KG  
Sbjct: 63  RSGLVDIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIA 122

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D  T  I++N +C   K+  A   + ++   G+ P     + L+ GL   G +  A ++
Sbjct: 123 YDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVEL 182

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V+ M+    V DL T N+++  +C    V   V++   +   G   +  TY  ++  + K
Sbjct: 183 VDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCK 242

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G    A  LL  +     KP    Y  II  + + G+ DDA  FFSEM+ KG   N   
Sbjct: 243 SGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFT 302

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           Y  LI      GR+ + A  L +M    +TP    F  + D L   GK
Sbjct: 303 YNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGK 350



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    K G   +A+++  K      +  V+ Y  ++  LC+      A +    M  KG
Sbjct: 236 ILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKG 295

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              +  TY  L+ ++CS G+  +  + L++M  +   P V     L+  L+  G L  AK
Sbjct: 296 IKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAK 355

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + N+MI +G   +  T+NSLI  +C    ++   +M   +   G   D+ TY ILI   
Sbjct: 356 DLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF 415

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            KA  +D+  RL   +   G       Y+ +I+G  +  +   A   F EM  +G  P  
Sbjct: 416 CKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGI 475

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y +L+      G   EA   L +M +  +      ++++  G+ N  K D A
Sbjct: 476 MTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDA 529



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 138/313 (44%), Gaps = 5/313 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC-EVKLFHGAYALIRR 77
           TL+++I  F +   +  A     K      +   + +N+LL  LC E ++F  A  L+  
Sbjct: 127 TLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFE-AVELVDC 185

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+    VPD  T   +VN  C   ++ EA + +  M   G  P       ++  +  +G 
Sbjct: 186 MVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGN 245

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             SA  ++ KM  +     + T+  +I+ +CK G ++  +  +  +   G+ A+V TY  
Sbjct: 246 TASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNS 305

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI +    G  D+  +LL +++     P    ++ +I  + + G+  +A   ++EM  +G
Sbjct: 306 LIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRG 365

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y  LI       R  EA   +  M   G  P    ++++ +G   C    + +
Sbjct: 366 IEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF--CKAKQVDD 423

Query: 318 KIELL-EVSLRSV 329
            + L  ++SLR +
Sbjct: 424 GMRLFRKMSLRGM 436



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 6/187 (3%)

Query: 136 GYLESAKQ------MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           G L   KQ      +  +M  +G   DL T N +I   C+  ++ F       + KLG  
Sbjct: 98  GLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYE 157

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  T+  L+  +   G + EA  L+  +V   H P       I+ G+  + +  +A   
Sbjct: 158 PNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDL 217

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            + M   G  PN+  Y  ++    + G    A + L +M    + P    + ++ D L  
Sbjct: 218 IARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCK 277

Query: 310 CGKHDLA 316
            G+ D A
Sbjct: 278 DGRLDDA 284


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 128/284 (45%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           AV++  K     C   V  Y +L+  L     F  A  +  +M+  G VP   TY+ L+N
Sbjct: 326 AVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALIN 385

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                G+   A    + M      P     +++++G  + GY++ A  + ++M+K G   
Sbjct: 386 QLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSP 445

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           ++ T+N +I    K G +   + +   +   GL  D  TY  LI   S+ G ++ AF L 
Sbjct: 446 NVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLF 505

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + +VE G  P    Y  II G     + DDA   F +M   G+ P+   Y M+I+   + 
Sbjct: 506 NEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKT 565

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            R  EA N+  +M + GL P    +    DGL   G+  LA KI
Sbjct: 566 NRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKI 609



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 129/288 (44%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+G +D A E+F++     C    + Y++L+  LC       A  ++  MI KG  P   
Sbjct: 249 KNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y I + + C +G+  EA + L +M  +G  P V+    L+ GL   G  E A  + +KM
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +  G V    T+++LI  +   G  E  + ++  +       +  TY ++I      G I
Sbjct: 369 LADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYI 428

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            +A  +   +++ G  P    Y  II   F++G  ++A      MK  G   +   Y  L
Sbjct: 429 QKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANL 488

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           I+   RGG+   A +   EM E G++P    ++ + +G     K D A
Sbjct: 489 ISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDA 536



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 119/262 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y SL+   C+      A+ +  RM++ G  P+  TY+ L+N  CS G++ EA + L+EM 
Sbjct: 240 YTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMI 299

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           DKG  P V    + +  L +AG    A +++ KM K+G   +++T+ +LI  + + G+ E
Sbjct: 300 DKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFE 359

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +Y+ +   GL     TY  LI  +   G  + A  +   ++     P    Y  II
Sbjct: 360 VAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVII 419

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG    G    A   F +M   G  PN   Y ++I +  + G    A   L  M   GL 
Sbjct: 420 KGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLK 479

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
             +  +  +  G    GK + A
Sbjct: 480 LDTWTYANLISGFSRGGKLEHA 501



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 139/312 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK      + QT + +I    + G  + A+ V++K  A       + Y++L+  L     
Sbjct: 333 MKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGR 392

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +   M+    +P+  TY +++  +CS G +++A     +M   G +P V   ++
Sbjct: 393 FETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNI 452

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++      GY+ +A +++  M   G  LD  T+ +LI    + G++E    ++  + + G
Sbjct: 453 IIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHG 512

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +V TY  +I        +D+A  L   +VE G+ P    Y  +I G  +  +  +A 
Sbjct: 513 ISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAE 572

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            F  +M  +G  PN   YT  I    + GR   A     EM +    P    +  + DGL
Sbjct: 573 NFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGL 632

Query: 308 KNCGKHDLAEKI 319
              G+ + AE++
Sbjct: 633 CQEGQAEDAERL 644



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 14/295 (4%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M  ++   + +T ++II+ F   G +  A  +F++         V+ YN ++    + 
Sbjct: 401 EWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQ 460

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A  L+  M   G   D  TYA L++ +   GK+  A     EM + G +P V   
Sbjct: 461 GYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTY 520

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYY 181
           + ++ G L    ++ A  +  KM++ G V    T+N +I    K+  +     FC +M  
Sbjct: 521 NAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKM-- 578

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
              K GL  +V TY   I  + K G    AF++ H + +  + P    Y+ +I G+ + G
Sbjct: 579 --VKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEG 636

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTP 295
           Q +DA     +    G  PN   YT L+  +CG+ GR  EA   +  M + GL P
Sbjct: 637 QAEDAERLLDD----GCEPNVDTYTTLVRGLCGK-GRCYEADQLVESMKKKGLQP 686



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 6/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I +    G  + A+ +F    + +       YN ++   C +     A A+  +M
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+  TY I+++ +   G M  A   L+ M   G          L+ G    G L
Sbjct: 439 LKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKL 498

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  + N+M++ G   ++ T+N++I       +V+  + +++ + + G      TY ++
Sbjct: 499 EHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMM 558

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK   I EA      +V+ G  P    Y   I G+ + G+   AF  F EMK + +
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y+ LI    + G+  +A   L +    G  P    +  +  GL  CGK    E 
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGL--CGKGRCYEA 672

Query: 319 IELLE 323
            +L+E
Sbjct: 673 DQLVE 677



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 123/277 (44%), Gaps = 4/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II  + K G ++NA+ +         +     Y +L+           A++L   M
Sbjct: 449 TYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEM 508

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY  ++N + +  K+ +A     +M + G  P     ++++ G      +
Sbjct: 509 VEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI 568

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+    KM+KQG + ++ T+ S I+ +CK+G      ++++ + K     ++ TY  L
Sbjct: 569 SEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSL 628

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G  ++A RLL    +DG +P    Y  +++G+  +G+  +A      MK KG 
Sbjct: 629 IDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGL 684

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+  +Y  L+    +      A      M   G  P
Sbjct: 685 QPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQP 721



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 128/298 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+   Y+   +  + S ++ + GK  +     +V+ +      +  +  +N+++  LC  
Sbjct: 156 EINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRPNLFTFNAMIKILCNK 215

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  +   G  PD  TY  L+   C +G +  A E    M   G +P     
Sbjct: 216 GKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTY 275

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL + G LE A  M+ +MI +G    +  +   I ++C +G     V++   + K
Sbjct: 276 SALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKK 335

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   +V TY  LI  +S+ G  + A  + H ++ DG  P    Y+ +I  ++  G+F+ 
Sbjct: 336 RGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFET 395

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           A   F  M      PN   Y ++I      G   +A     +M + G +P    ++++
Sbjct: 396 ALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNII 453



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/291 (24%), Positives = 130/291 (44%), Gaps = 1/291 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           L+I+     G V   ++V ++  T ++    +  +++LL  L +  +      +   M+ 
Sbjct: 136 LMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLN 195

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P+  T+  ++   C+ GK++EA+  +  +   G  P       L+ G    G L+ 
Sbjct: 196 SGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDL 255

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +M ++M+K G   +  T+++LI  +C  G +E  ++M   +   G+   V  Y I I 
Sbjct: 256 AFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIV 315

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           ++  AG   EA +LL  + + G  P    Y  +I G+ R G+F+ A   + +M   G  P
Sbjct: 316 SLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVP 375

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
               Y+ LI      GRF  A      M      P +  ++++  G  + G
Sbjct: 376 TAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIG 426



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 6/248 (2%)

Query: 73  ALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS---DKGFNPPVRGRDLL 128
           +++ R++R + FVP      +++ +  + G+++   + L E++   D G+        L+
Sbjct: 116 SMLNRLVRDRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLI 175

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
             G  +   L   + +  +M+  G   +L TFN++I+ +C  G+V+    +   +   G 
Sbjct: 176 QLGKFDMDGL--GRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGA 233

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           C D  TY  LI    K G +D AF +   +V+DG  P    Y+ +I G+   G+ ++A  
Sbjct: 234 CPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMD 293

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
              EM  KG  P    YT+ I      GR  EA   L +M + G  P  + +  +  GL 
Sbjct: 294 MLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLS 353

Query: 309 NCGKHDLA 316
             GK ++A
Sbjct: 354 RDGKFEVA 361



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 125/298 (41%), Gaps = 31/298 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E+MK   L +   T + +I  F + G +++A  +FN+         V+ YN+++   
Sbjct: 468 RLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGY 527

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             V     A AL  +M+  G VP   TY ++++ +  + ++ EA+ F  +M  +G  P V
Sbjct: 528 LTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNV 587

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL------------------------- 157
                 + GL   G    A ++ ++M K+ +  +L                         
Sbjct: 588 ITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD 647

Query: 158 ------ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
                 +T+ +L+  +C  G      ++  S+ K GL      Y+ L+    K   ++ A
Sbjct: 648 GCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESA 707

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            ++  ++V  G +P  S Y  +I  + +      A C F  M  K    +  V+T+L+
Sbjct: 708 LKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLL 765



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 4/229 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T +++I  F K   +  A     K         V+ Y S +  LC+      A+ + 
Sbjct: 551 SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIF 610

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M ++ + P+  TY+ L++  C  G+  +A+  L    D G  P V     LV+GL   
Sbjct: 611 HEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVDTYTTLVRGLCGK 666

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G    A Q+V  M K+G     E + +L+   CK+ EVE  ++++ S+   G    +S Y
Sbjct: 667 GRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDY 726

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K LI A+ KA    +A  +   +++        ++  ++ G+ + G+ D
Sbjct: 727 KALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETD 775



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 97/208 (46%)

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + G  P +   + +++ L N G ++ A+ ++  +   G   D  T+ SLI   CK+G
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++   EM+  + K G   +  TY  LI  +   G ++EA  +L  +++ G +P    Y 
Sbjct: 252 NLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYT 311

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             I  +   G+  +A     +MK +G  PN   YT LI+   R G+F  A     +M   
Sbjct: 312 IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLAD 371

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL P +  +  + + L   G+ + A  I
Sbjct: 372 GLVPTAVTYSALINQLYVEGRFETALTI 399



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 4/198 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +  I+   K+G    A ++F++    +    +  Y+SL+  LC+     G      R+
Sbjct: 589 TYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQ----EGQAEDAERL 644

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY  LV   C  G+  EA + ++ M  KG  P       L+ G      +
Sbjct: 645 LDDGCEPNVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEV 704

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA ++ + M+  GF   L  + +LI  +CK+   +    M+ ++ K    +D   + +L
Sbjct: 705 ESALKIFDSMVTTGFQPCLSDYKALICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVL 764

Query: 199 IPAVSKAGMIDEAFRLLH 216
           +  + K G  D +  LLH
Sbjct: 765 LDGLLKEGETDLSLELLH 782



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 3/209 (1%)

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEV 173
           D+ F P    R L+++   N G ++   Q+++++     F   L +F++L+  + K    
Sbjct: 124 DRLFVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMD 183

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++Y  +   G+  ++ T+  +I  +   G + EA  ++ ++   G  P    Y  +
Sbjct: 184 GLGRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSL 243

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF  F  M   G  PN   Y+ LI      GR  EA + L EM + G+
Sbjct: 244 IIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGI 303

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            P    + +    L + G+    E ++LL
Sbjct: 304 EPTVHAYTIPIVSLCDAGRS--CEAVKLL 330



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 17/216 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   + G  ++A  + +      C+  V  Y +L+  LC     + A  L+  M
Sbjct: 624 TYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVESM 679

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  P +  Y  L+   C + ++  A +    M   GF P +     L+  L  A + 
Sbjct: 680 KKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKANFR 739

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV----CKLGLCADVST 194
           + A+ M   M+K+ +  D   +  L++ + K GE +  +E+ + +    C L     V  
Sbjct: 740 QKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQTRVML 799

Query: 195 YK--------ILIPAVSKA-GMIDEAFRLLHNLVED 221
            +        I IP +SK  G++ E  +   +++ D
Sbjct: 800 ARELSALGCSIEIPQISKQLGIVKEKQKQTADVLRD 835



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   L  S +    ++    K+  V++A+++F+       Q C+  Y +L+ ALC+
Sbjct: 676 VESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCK 735

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  + + M++K +  D+  + +L++     G+   + E L  M  +      + 
Sbjct: 736 ANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRNCTLNFQT 795

Query: 125 RDLLVQGLLNAG 136
           R +L + L   G
Sbjct: 796 RVMLARELSALG 807


>gi|255584082|ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527472|gb|EEF29603.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 487

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + LS  P T +++I    K+G   NA+ +F           ++ YN L+  LC+ +    
Sbjct: 171 HGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRA 230

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A ++++ +   G+VP+  TY  ++     S + ++  E LQEM DKG+         +V 
Sbjct: 231 ARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVG 290

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L+  G LE A + + +MIK G   DL ++N+LI   CK G +E   ++   + K GL  
Sbjct: 291 VLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQC 350

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  T+ ILI  + KAG I  A R + ++   G          ++ G+ + GQ D A   F
Sbjct: 351 DEYTHTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKLF 410

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             MK++    +   Y+ L+    + GRF  A+  L+     G+  +     +V  GL+  
Sbjct: 411 ESMKMR----DSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKILPSAQRVVISGLRYS 466

Query: 311 GKHDLAEKIE 320
           G    A K++
Sbjct: 467 GFQKEARKLK 476



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 109/241 (45%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L N  + +LC+ K  + A ++I   IR G +PD  TY  L++A+        A   L  M
Sbjct: 39  LLNISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRM 98

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            +   +P V   + L+ G      L  +  + ++M+  G V D+ ++N+L+    K G+ 
Sbjct: 99  REASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGKA 158

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   E+   +   GL    +T+ I+I  + K G    A  L  +L + G  P    Y  +
Sbjct: 159 EEANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNIL 218

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G+ +  +   A     E++  G+ PN   YT ++  C R  RF +    L EM + G 
Sbjct: 219 INGLCKDRRLRAARSMLKELETSGYVPNAITYTTVMKFCFRSRRFKQGLEILQEMIDKGY 278

Query: 294 T 294
           T
Sbjct: 279 T 279



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 108/242 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A      F+ AY+L+ RM      PD  TY  L+     +  + E+     
Sbjct: 72  VVTYNTLIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFD 131

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + G  P V   + L+      G  E A +++ ++   G      TFN +I  +CK+G
Sbjct: 132 EMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMINGLCKNG 191

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                + ++ S+ + G    + TY ILI  + K   +  A  +L  L   G+ P    Y 
Sbjct: 192 FTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVPNAITYT 251

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++K  FR  +F        EM  KG+  +   Y  ++ +  + GR  EA  Y+ +M + 
Sbjct: 252 TVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYMRQMIKN 311

Query: 292 GL 293
           G+
Sbjct: 312 GI 313



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 145/344 (42%), Gaps = 37/344 (10%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L V P   T + +I+ + +    + A  + N+    +    V+ YNSL+       L   
Sbjct: 66  LGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRMREASISPDVVTYNSLIAGAARNCLLLE 125

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           +  L   M+  G VPD  +Y  L++ +   GK  EA E L+++   G +P     ++++ 
Sbjct: 126 SLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGKAEEANEVLRQIFGHGLSPCPTTFNIMIN 185

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----------------SGEV- 173
           GL   G+  +A  +   + + GFV  L T+N LI  +CK                SG V 
Sbjct: 186 GLCKNGFTSNALMLFRSLKQHGFVPQLITYNILINGLCKDRRLRAARSMLKELETSGYVP 245

Query: 174 ---------EFC---------VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
                    +FC         +E+   +   G   D   Y  ++  + K G ++EA   +
Sbjct: 246 NAITYTTVMKFCFRSRRFKQGLEILQEMIDKGYTFDGFAYCTVVGVLIKTGRLEEATEYM 305

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++++G +   + Y  +I    ++G  + A+    E++ +G   +   +T+LI    + 
Sbjct: 306 RQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIEKEGLQCDEYTHTILINWMCKA 365

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  + A  ++  M  MG        + + DGL   G+ D A K+
Sbjct: 366 GNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQIDHAVKL 409



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 4/201 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +++  L +      A   +R+MI+ G   D  +Y  L+N +C  G +  A + L E+ 
Sbjct: 285 YCTVVGVLIKTGRLEEATEYMRQMIKNGIEHDLASYNTLINLYCKQGNLEAAYQLLDEIE 344

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G         +L+  +  AG +  A++ +  M   GF   L   N +++ +CK+G+++
Sbjct: 345 KEGLQCDEYTHTILINWMCKAGNILGARRHMQHMNMMGFDSCLVALNCMVDGLCKNGQID 404

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V+++ S+ K+    D  TY  L+  + K G    A +LL + +  G K  PS    +I
Sbjct: 405 HAVKLFESM-KM---RDSFTYSSLVHNLCKNGRFHRASKLLLSCLRSGMKILPSAQRVVI 460

Query: 235 KGMFRRGQFDDAFCFFSEMKI 255
            G+   G   +A    S++K+
Sbjct: 461 SGLRYSGFQKEARKLKSKIKL 481



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 68/153 (44%)

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           L     N  I ++CK+ E+     +     +LG+  DV TY  LI A S+    + A+ L
Sbjct: 35  LSTRLLNISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSL 94

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L+ + E    P    Y  +I G  R     ++   F EM   G  P+   Y  L+    +
Sbjct: 95  LNRMREASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFK 154

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            G+  EA   L ++   GL+P    F+++ +GL
Sbjct: 155 LGKAEEANEVLRQIFGHGLSPCPTTFNIMINGL 187



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 35/205 (17%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK---------------- 169
           ++ +  L  A  L  A+ ++   I+ G + D+ T+N+LI+   +                
Sbjct: 41  NISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVSFNAAYSLLNRMRE 100

Query: 170 --------------SGEVEFC-----VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                         +G    C     + ++  +  +G+  DV +Y  L+    K G  +E
Sbjct: 101 ASISPDVVTYNSLIAGAARNCLLLESLNLFDEMLNMGIVPDVWSYNTLMHCFFKLGKAEE 160

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +L  +   G  P P+ +  +I G+ + G   +A   F  +K  G  P    Y +LI 
Sbjct: 161 ANEVLRQIFGHGLSPCPTTFNIMINGLCKNGFTSNALMLFRSLKQHGFVPQLITYNILIN 220

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
              +  R   A + L E+   G  P
Sbjct: 221 GLCKDRRLRAARSMLKELETSGYVP 245


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 143/309 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   L ++    + +I+ FG  GLV+  + V+ +         +  YN L+  L     
Sbjct: 176 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 235

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M     VPD  TY I++  +C +GK+++A E  ++M  K   P       
Sbjct: 236 IESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMT 295

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q   +    ++   +  +M ++G  +   +++ +I  +CK  +      ++ ++ + G
Sbjct: 296 LIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG 355

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             A+V+ Y  LI + SK G ++EA RL   +  +G +P    Y+ ++ G+ + G+ DD  
Sbjct: 356 CRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGM 415

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F   + KG   N   Y  LI   G+ GR  +A N   EM+E G    S C++ + D L
Sbjct: 416 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDAL 475

Query: 308 KNCGKHDLA 316
              GK D A
Sbjct: 476 AKHGKIDQA 484



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E+M    +     T +++I+ + K G +  A+E F      N +   + Y +L+ A 
Sbjct: 241 KVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQAC 300

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
              + F    +L   M  +G      +Y++++   C   K  EA    + M+ KG    V
Sbjct: 301 YSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANV 360

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+      G +E A ++  +M  +GF  D  T++ L+  +CKSG ++  +E++  
Sbjct: 361 AIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDF 420

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
               G+  +   Y  LI  + KAG I++A  L   + E G       Y  II  + + G+
Sbjct: 421 CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGK 480

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F  M+ +G       +T+LI    +  +  EA  +  +M + G+TP    F  
Sbjct: 481 IDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRA 540

Query: 303 VTDGLKNCGKHDLAEKI 319
           +  GL  CGK   A KI
Sbjct: 541 LAIGLCLCGKVARACKI 557



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 1/312 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L + P + SL+I    K      A  VF       C+  V +Y +L+ +  +   
Sbjct: 316 MEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGS 375

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  RM  +GF PD  TY++LVN  C SG++ +  E      +KG          
Sbjct: 376 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS 435

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG +E A+ +  +M ++G   D   +N++I+ + K G+++  + ++  + + G
Sbjct: 436 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 495

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               V T+ ILI  + K    +EA +    +++ G  P  + +  +  G+   G+   A 
Sbjct: 496 CDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARAC 555

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               ++   G  P      M+ T+C +  R  EA      + + G     R   ++ + L
Sbjct: 556 KILDDLAPMGIIPETAFEDMINTLC-KAQRIKEACKLADGIVDRGREIPGRIRTVLINAL 614

Query: 308 KNCGKHDLAEKI 319
           +  G  DL  K+
Sbjct: 615 RKAGNSDLVIKL 626



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E MK         T S+++    K G +D+ +E+F+ C         + Y SL+  L
Sbjct: 381 RLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 440

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +      A  L   M  KG   D   Y  +++A    GK+ +A      M ++G +  V
Sbjct: 441 GKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTV 500

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ GL      E A +  +KMI +G    + +F +L   +C  G+V    ++   
Sbjct: 501 YTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDD 560

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +  +G+  + + ++ +I  + KA  I EA +L   +V+ G +    +   +I  + + G 
Sbjct: 561 LAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGN 619

Query: 243 FD 244
            D
Sbjct: 620 SD 621



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+  GK G +++A  +F + +   C +    YN+++ AL +      A AL  RM  +G
Sbjct: 436 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 495

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                 T+ IL++      K  EA +F  +M DKG  P V     L  GL   G +  A 
Sbjct: 496 CDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARAC 555

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++++ +   G + +   F  +I T+CK+  ++   ++   +   G         +LI A+
Sbjct: 556 KILDDLAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINAL 614

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            KAG  D   +L+H+ +  G+    S+
Sbjct: 615 RKAGNSDLVIKLMHSKIGIGYDRMGSI 641



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 35/238 (14%)

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+ D+G        + L++   N G +E    +  +M + G    L T+N L+  +  S 
Sbjct: 175 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 234

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +E   +++  +    +  D  TY I+I    KAG + +A     ++     KP    Y 
Sbjct: 235 FIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYM 294

Query: 232 PIIKGMFRRGQFD-----------------------------------DAFCFFSEMKIK 256
            +I+  +    FD                                   +A+  F  M  K
Sbjct: 295 TLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQK 354

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           G   N  +YT LI    + G   EA      M   G  P +  + ++ +GL   G+ D
Sbjct: 355 GCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLD 412


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M+  +   +   L  S    + ++      G   +AV+ F++   F  +    +YN++L 
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILK 180

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           AL +  +   A AL  RM+  G  P++ TY +L++  C  G   +A +   EM D+G  P
Sbjct: 181 ALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMP 240

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V+   +L+  L NAG ++ A Q++  M  +G + D  T+N+ +  +CK G V    +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G    +  Y  LI  + +A   DE F     ++E    P   LY  +I+G    
Sbjct: 301 VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEA 360

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRG 275
           G+ +DA  F   MK KG  P+   Y T+L  +C  G
Sbjct: 361 GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 15/289 (5%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP  +  +++I    + G +++A+   +             YN++L  LC+      A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M++   V D  T  I++   C  G + EA +   EM + G +P V   + L+ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 LLNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSGEVEFCVE 178
               G LE A+ + +KM             +    V D E+   L+  +C+SG+V    +
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  S+   G+  DV TY  LI  + KA  +D A RL   L   G  P    Y  +I G+ 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           R  + +DA   F  +   G  P+  +Y  ++    R  +  +A N  ++
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLD 630



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 152/324 (46%), Gaps = 18/324 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++      G +D AV++        C    + YN+ L  LC+V   + A+  +  +  
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            GF    + Y+ L++    + +  E   + + M ++  +P V    ++++G   AG +E 
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIED 365

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A   ++ M K+GFV D   +N++++ +C  G++E    +   + +  L  D +T  I+I 
Sbjct: 366 ALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G++DEA ++   + E G  P    Y  +I G +R G+ ++A   F +M++  +P 
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPS 485

Query: 261 --------------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                         +  +  ++  MC + G+ ++A   L  + + G+ P    ++ + +G
Sbjct: 486 LFLRLTLGANQVCDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544

Query: 307 LKNCGKHDLAEKIELL-EVSLRSV 329
           L  C   +L   + L  E+ L+ +
Sbjct: 545 L--CKARNLDGAVRLFKELQLKGI 566



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 37/282 (13%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G       +A LV A  S+G+  +A +    M +    P     + +++ L+++G +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + N+M+  G   +  T+N L++ +CK G     ++M+  +   G+  +V  Y +L+ +
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKP---------------------FPSL----------- 229
           +  AG IDEA +LL ++ + G  P                     F  L           
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 230 ---YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+F+  +FD+ F ++  M  +   P+  +YT++I  C   GR  +A ++L 
Sbjct: 312 LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLD 371

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            M + G  P + C++ V   L + G  + A  +  E+L+ +L
Sbjct: 372 VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNL 413



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 144/330 (43%), Gaps = 18/330 (5%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA------LCEV 65
           NL +   T +++I    K GLVD A+++F++     C   V+ YN+L+        L E 
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 66  K-LFH------GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + LFH           +R  +    V D  +   LV+  C SG++ +A + L+ + D G 
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   + L+ GL  A  L+ A ++  ++  +G   D  T+ +LI+ + ++      + 
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL-LHNLVEDGHKPFPSLYAPIIKGM 237
           ++ ++ + G    +S Y  ++ ++ +   + +A  L L  L +  + P  S         
Sbjct: 592 LFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKE 651

Query: 238 FRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
              G  DD      ++  + G+  + P    LI +C +  R  +A      + E G+   
Sbjct: 652 IEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLC-QVRRTDDALRIFHTLQEFGIDIT 710

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
             C  L+ + L  C   +L   ++++  +L
Sbjct: 711 PACCALLINYL--CWDRNLNAAVDIMLYAL 738


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 154/354 (43%), Gaps = 39/354 (11%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V P   T + +I      G   NA+ V        C   V+ Y  LL A C+   + 
Sbjct: 159 DMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYK 218

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+  M  KG  PD  TY +++N  C  G++ +A EFL+ +   G  P     ++++
Sbjct: 219 QAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVL 278

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE----------- 178
           +GL  A   E A++++ +M  +G   ++ TFN LI  +C+ G VE  +E           
Sbjct: 279 KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCT 338

Query: 179 --------MYYSVCK----------------LGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                   + ++ CK                 G   D+ +Y  L+ A+ + G +D A  L
Sbjct: 339 PNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIEL 398

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           LH L + G  P    Y  +I G+ + G+  +A     EM  KG  P+   Y+ + +   R
Sbjct: 399 LHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCR 458

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             R  EA     ++ +MG+ P +  ++ +  GL  C + +    I+L    + S
Sbjct: 459 EDRIEEAVRTFCKVQDMGIRPTAALYNAILLGL--CKRRETHNAIDLFAYMISS 510



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 119/239 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV  +   + C    L YN LL A C+ K  H A   +  M
Sbjct: 308 TFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C +G++  A E L ++ DKG +P +   + ++ GL  AG  
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKT 427

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++++M  +G   D+ T++++   +C+   +E  V  +  V  +G+    + Y  +
Sbjct: 428 KEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAI 487

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  + K      A  L   ++  G  P  S Y  +++G+   G   +A   F+++  +G
Sbjct: 488 LLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRG 546



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 12/298 (4%)

Query: 29  KHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + G +D+A+ + +     N      V    +L+  LC      G  A  RR++     PD
Sbjct: 79  RRGELDDALRLVDSLAGLNPPSPAAVGPCAALIKKLCA----SGRTADARRVLAASG-PD 133

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              Y  +V  +C +G++  A+  + +M      P     + L++GL   G   +A  ++ 
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAVLE 190

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M ++G + D+ T+  L+E  CK    +  +++   +   G   D+ TY +++  + + G
Sbjct: 191 DMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEG 250

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +++A   L NL   G +P    Y  ++KG+F   +++DA     EM  KG PPN   + 
Sbjct: 251 RVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFN 310

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           MLI+   R G    A   L +M + G TP S  ++ +      C +  + + +E +E+
Sbjct: 311 MLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAF--CKQKKIHKAMEFVEL 366



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 127/307 (41%), Gaps = 40/307 (13%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++   C       A  L+  M      PD  TY  L+   C  G+   A   L+
Sbjct: 134 VMVYNAMVAGYCGAGQLDAARRLVADM---PVEPDAYTYNTLIRGLCGRGRTSNALAVLE 190

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +G  P V    +L++        + A +++++M  +G   D+ T+N ++  IC+ G
Sbjct: 191 DMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEG 250

Query: 172 EVE----------------------------FCVEMYYSVCKL-------GLCADVSTYK 196
            VE                            F  E +    KL       G   +V T+ 
Sbjct: 251 RVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFN 310

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +LI  + + G+++ A  +L  + + G  P    Y P++    ++ +   A  F   M  +
Sbjct: 311 MLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSR 370

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   Y  L+T   R G    A   L ++ + G +P+   ++ V DGL   GK    
Sbjct: 371 GCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTK-- 428

Query: 317 EKIELLE 323
           E +ELL+
Sbjct: 429 EALELLD 435



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  Y  + +  + + ++  F K   +  A+E      +  C   ++ YN+LL AL
Sbjct: 327 EVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTAL 386

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+ ++  KG  P   +Y  +++    +GK +EA E L EM+ KG  P +
Sbjct: 387 CRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDI 446

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                +  GL     +E A +   K+   G       +N+++  +CK  E    ++++  
Sbjct: 447 ITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAY 506

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +   G   + STY IL+  ++  G++ EA  L   L   G
Sbjct: 507 MISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRG 546



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           ++G VD A+E+ ++     C   ++ YN+++  L +      A  L+  M  KG  PD  
Sbjct: 388 RNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDII 447

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+ + +  C   ++ EA     ++ D G  P     + ++ GL       +A  +   M
Sbjct: 448 TYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYM 507

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           I  G + +  T+  L+E +   G V+   E++  +C  G+
Sbjct: 508 ISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 146/327 (44%), Gaps = 37/327 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    + GLV+ A   F +  A      V+ YNSLL   C+      A  L   +
Sbjct: 312 TYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDL 371

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  P   TY I ++ +C  G + EA+   +EM ++G  P V    +L++G LN   L
Sbjct: 372 RRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSL 431

Query: 139 ESAKQMVNKMIKQGF----------------------------VLDLE-------TFNSL 163
             A++  ++M+ +G                             VL LE       T+N L
Sbjct: 432 AMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNIL 491

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +CK+G ++   E+   +   GL  D  TY  LI A  + G++ EA ++ +N++ DG 
Sbjct: 492 IHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGL 551

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    +  II    RRG    A+ +F +M  +G  PN   Y +LI    R GR   A++
Sbjct: 552 LPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASH 611

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +  EM E GL      + L+ DG  NC
Sbjct: 612 HFHEMLERGLVANKYTYTLLIDG--NC 636



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 85/182 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+  LC+      A  L  +M+  G  PD  TY  L++A C  G +REA++    M 
Sbjct: 488 YNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMI 547

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      +++      G L SA     KM+++G   +  T+N LI  +C+ G  +
Sbjct: 548 SDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQ 607

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
                ++ + + GL A+  TY +LI    K G  ++A R    + ++G  P    +  ++
Sbjct: 608 LASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALV 667

Query: 235 KG 236
           KG
Sbjct: 668 KG 669



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 121/274 (44%), Gaps = 16/274 (5%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           ++ EE G+ G + N            C   +L+  SL   +C + +   A      M+ K
Sbjct: 401 ILKEEMGEQGCLPNV-----------CTYTILMKGSL--NVCSLAM---AREFFDEMLSK 444

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD   Y   + A    G +  A E  + +  +G +      ++L+ GL   G L+ A
Sbjct: 445 GLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDA 504

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           K++  KM+  G   D  T+  LI   C+ G +    +++ ++   GL     T+ ++I A
Sbjct: 505 KELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHA 564

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G +  A+     ++E+G +P    Y  +I  + R G+   A   F EM  +G   N
Sbjct: 565 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVAN 624

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +  YT+LI    + G + +A  +  EM + G+ P
Sbjct: 625 KYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHP 658



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 4/236 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR--MIRKGFVPDKRTYAIL 93
           A E F++  +   Q     YN+ + A  E+ L   A AL  R  ++ +G   D  TY IL
Sbjct: 434 AREFFDEMLSKGLQPDCFAYNTRICA--ELILGDIARALELREVLMLEGISSDTVTYNIL 491

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C +G +++A+E   +M   G  P       L+      G L  A+++ N MI  G 
Sbjct: 492 IHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGL 551

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           +    TF  +I   C+ G +      +  + + G+  +  TY +LI A+ + G    A  
Sbjct: 552 LPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASH 611

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             H ++E G       Y  +I G  + G ++DA  F+ EM   G  P+   +  L+
Sbjct: 612 HFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALV 667



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 94/194 (48%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++    +S    T +++I    K G + +A E+  K  +   Q   + Y  L+ A CE 
Sbjct: 474 EVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCER 533

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            L   A  +   MI  G +P   T+ ++++A+C  G +  A  + ++M ++G  P     
Sbjct: 534 GLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITY 593

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L+  L   G  + A    ++M+++G V +  T+  LI+  CK G  E  +  Y+ + +
Sbjct: 594 NVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQ 653

Query: 186 LGLCADVSTYKILI 199
            G+  D  T+K L+
Sbjct: 654 NGIHPDYLTHKALV 667



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 11/321 (3%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALCEVKL 67
            L + P   T + +++ F K G  D    +  +       C    + YN ++  L     
Sbjct: 197 QLGIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGD 256

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M R        TY  L+    + G +++  +   EM ++G  P V   + 
Sbjct: 257 LEEAAELVEGM-RLSKKASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNA 315

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GLL +G +E+A+    +M   G + D+ T+NSL+   CK+G ++  + ++  + + G
Sbjct: 316 MIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAG 375

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   V TY I I    + G ++EA  L   + E G  P    Y  ++KG         A 
Sbjct: 376 LAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAR 435

Query: 248 CFFSEMKIKGHPPNRPVYTMLIT---MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            FF EM  KG  P+   Y   I    + G   R +E    L  M E G++  +  ++++ 
Sbjct: 436 EFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVL--MLE-GISSDTVTYNILI 492

Query: 305 DGLKNCGKHDLAEKIELLEVS 325
            GL   G    A+++++  VS
Sbjct: 493 HGLCKTGNLKDAKELQMKMVS 513



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 115/320 (35%), Gaps = 73/320 (22%)

Query: 76  RRMIRKGFVPDKR-----------------------------------TYAILVNAWCSS 100
           R M   G  PD +                                   TY  L++++   
Sbjct: 158 REMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVTYNTLLDSFLKE 217

Query: 101 GKMREAQEFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKM---------- 148
           G+  +    L+EM  +G    P     ++++ GL   G LE A ++V  M          
Sbjct: 218 GRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEAAELVEGMRLSKKASSFT 277

Query: 149 -------------IKQGFVLDLE-----------TFNSLIETICKSGEVEFCVEMYYSVC 184
                        +K+ + L LE           T+N++I  + +SG VE     +  + 
Sbjct: 278 YNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMR 337

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +GL  DV TY  L+    KAG + EA  L  +L   G  P    Y   I G  R G  +
Sbjct: 338 AMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLE 397

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM  +G  PN   YT+L+           A  +  EM   GL P   CF   T
Sbjct: 398 EARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQP--DCFAYNT 455

Query: 305 DGLKNCGKHDLAEKIELLEV 324
                    D+A  +EL EV
Sbjct: 456 RICAELILGDIARALELREV 475



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 52/116 (44%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T ++II  + + G + +A   F K      +   + YN L+ ALC +     A    
Sbjct: 554 SAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHF 613

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             M+ +G V +K TY +L++  C  G   +A  F  EM   G +P       LV+G
Sbjct: 614 HEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALVKG 669


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 3/308 (0%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T S  ++I  F +    D+AV  F       C+  +  +  L+  LC+  +   A+
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209

Query: 73  ALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +   M+  GFVP D+  +  +V     + +++EA+E   +M   GF P     + ++ G
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AG+ + A ++++ M+ +  V    T+  L+ ++CK+G +E   E++  +   G   +
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI   +K+G + EA  L   +VE G++P    +  +I G+ + G F+ A   F 
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM   G  PN   YT +I    + GR   A   +  M   G  P S  +  + DG    G
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG 449

Query: 312 KHDLAEKI 319
           + D A ++
Sbjct: 450 RLDEAAQL 457



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 3/307 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K    ++ P     II    K G +D A  +F +  +  C+     YN L+  LC  
Sbjct: 495 EQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRS 554

Query: 66  K--LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A+AL+  + + G++PD  TY  L    C  G++  A + L+E S +G+N  V 
Sbjct: 555 RENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L  GL   G ++ A  +  +M++QG   D   +  +I  + K  ++E   + +  +
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEM 674

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQ 242
              G    V+TY  L+ A+  AG +DEAF    +++  G      + Y  +I G  +  +
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALK 734

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F +M  +G+ P       L     R G+  +A   L EM   G  P +  F  
Sbjct: 735 VDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTA 794

Query: 303 VTDGLKN 309
           + DGL+ 
Sbjct: 795 ILDGLRK 801



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 126/286 (44%), Gaps = 1/286 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G    A++V +   A  C    + Y  L+ +LC+      A  L R M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F P+   Y  L++ +  SG+M+EA     EM + G+ P V    +++ GL  +G  E A 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +   +M++ G   ++ T+ ++I+ + K G V     +   +   G   D  TY  L+   
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMKIKGHPPN 261
            K G +DEA +LL  L +    P   LY+ ++ G+   G  +      F + K      +
Sbjct: 446 CKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLD 505

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   +I    + GR  EA      M   G  P +  ++++ +GL
Sbjct: 506 PGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 1/271 (0%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN L+  L   K +   YA+   M++ G  P+  ++ IL+ ++  + +  +A  
Sbjct: 116 QHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVT 175

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETI 167
             + M  K   P +    +LV  L  AG  E A ++ ++M+  GFV  D     +++ T+
Sbjct: 176 CFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K+  V+   E++  + K G   D   Y  +I  ++KAG   EA ++L N++     P  
Sbjct: 236 LKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE 295

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++  + + G  + A   F  M   G  PN  +YT LI    + GR  EA +   E
Sbjct: 296 VTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDE 355

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           M E G  P      ++ DGL   G  + A K
Sbjct: 356 MVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 140/307 (45%), Gaps = 1/307 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCE 64
           E+MK         T  ++++   K G+ + A EVF++  A         L+ +++  L +
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  +  +M + GF PD   Y  +++    +G  +EA + L  M  K   P    
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +LV  L  AG LE A+++   M   GF  +   + SLI    KSG ++    ++  + 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   DV T+ ++I  + K+G  ++A +    ++  G KP    Y  II+G+ + G+  
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +AF     M   G  P+   Y  L+    + GR  EAA  L E+ +   +P  + +  + 
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 305 DGLKNCG 311
           +GL + G
Sbjct: 478 NGLCDGG 484



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 131/340 (38%), Gaps = 39/340 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K G V NA  +     A  C    + Y  LL   C++     A  L+  +
Sbjct: 402 TYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDEL 461

Query: 79  IRKGFVPDKRTYAILVNAWCS------------------------------------SGK 102
            +    P+ + Y+ LVN  C                                     +G+
Sbjct: 462 DKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR 521

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--GYLESAKQMVNKMIKQGFVLDLETF 160
           + EA    Q M  +G  P     ++L+ GL  +    +E A  +++ + K G++ D  T+
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
             L   +CK GEV+  V+M       G  ADV  Y  L   +   G +D A  L   +V 
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P  + Y  II G+ +  + +DA  FF EM  KG  P    YT L+      G   E
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDE 701

Query: 281 AANYLVEMTEMG-LTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A +    M   G L      +D +  G     K D A K+
Sbjct: 702 AFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKL 741



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 4/312 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G ++ A E+F    A   +   ++Y SL+    +      A +L   M
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G+ PD  T+ ++++  C SG   +A +  +EM   G  P V     ++QGL   G +
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A +++  MI  G   D  T+  L++  CK G ++   ++   + K     ++  Y  L
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPF-PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  +   G +++    L    +   +   P L   II G+ + G+ D+A   F  M  +G
Sbjct: 477 VNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEG 536

Query: 258 HPPNRPVYTMLIT-MC-GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             P+   Y +LI  +C  R  R   A   L ++ ++G  P +  +  +  GL   G+ D 
Sbjct: 537 CKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDR 596

Query: 316 AEKIELLEVSLR 327
           A K+ L E S R
Sbjct: 597 AVKM-LEEASSR 607



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 1/141 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG-FVPDKRTYA 91
           +++A + F++      +  V  Y +L+ ALC       A+     M+ +G  V     Y 
Sbjct: 664 LEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYD 723

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L++ +C + K+  A +  ++M  +G  P       L  GL+ +G  E A++++ +M   
Sbjct: 724 ALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAG 783

Query: 152 GFVLDLETFNSLIETICKSGE 172
           G      TF ++++ + KS E
Sbjct: 784 GSPPHAATFTAILDGLRKSDE 804


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K+ +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +    +Y  +I G+ R GQ  DA     EM   G  
Sbjct: 325 DGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 2/268 (0%)

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G  P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 176

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+ G +  G L+   ++ + M+  G   D+ T++ LI  +CK  +++   E++ 
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 236

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+ ++G
Sbjct: 237 EMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKG 296

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
               A     EM +KG  P++  YT LI  C + G    A  +   M +         + 
Sbjct: 297 DLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYT 356

Query: 302 LVTDGLKNCGKHDLAEKI--ELLEVSLR 327
            +  GL   G+   AEK+  E+L V L+
Sbjct: 357 ALISGLCREGQSVDAEKMLREMLSVGLK 384



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 3/246 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 70  SDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 130 YEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 249

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-E 323
           +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L+ E
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLIDE 307

Query: 324 VSLRSV 329
           +S++ +
Sbjct: 308 MSMKGL 313


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 9/303 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR-K 81
           +IE   + G++D A + F +  + N      L+N+L+ A+C+ K       L +RM   K
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 82  GFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            F   P+  TY I+V+  C + ++ EAQE + EM++ G +P V     LV GL   G L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +M K+G   D  T  S++  + K+G+V++ +    ++   G   D+ TY  L+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + KAG IDEA   L  +V     P    Y  II  + R GQ   A   F EM  +G  
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL-TPISRCFDLVTDGLKNCGK-HDLAE 317
           P+  +Y  L+    R G      +  +E+ +  L  P      +V DGL   GK  D  E
Sbjct: 512 PDTVLYHSLLDGLARNG----LEDLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACE 567

Query: 318 KIE 320
            +E
Sbjct: 568 VVE 570



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 136/309 (44%), Gaps = 24/309 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T S++I+   K   VD+A+E+F   +A   C   V+ +NSLL  LC  +    A+ L   
Sbjct: 110 TYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEY 169

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M + G  P+  +Y+ L++  C +G++ EA    +EM +K   P +      V GL  A  
Sbjct: 170 MAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANR 229

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A     KM+ +G   D   F+++I  +CK G  E                       
Sbjct: 230 VAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE------------------EAQNQ 271

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + ++GM+DEA +    ++   H P   L+  +I  + +  +  D    F  MK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 258 H---PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               PPN   Y +++    +  +  EA   + EM   GL+P    +  + DGL   GK D
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 315 LAEKIELLE 323
            A   +LLE
Sbjct: 392 RA--CDLLE 398



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN  L AL +      AY   ++M R+G+ PD  TY+I++   C +G++ +A+E
Sbjct: 35  QHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKE 94

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETI 167
            L ++ + G    V    +++ G   A  ++ A ++   M    G V D+ TFNSL++ +
Sbjct: 95  LLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGL 154

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C    +     ++  + K G   +V +Y  L+  + KAG +DEA RL   +VE    P  
Sbjct: 155 CSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y   + G+ +  +  +A     +M  KG   +   ++ +I +  + G   EA N ++E
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 142/298 (47%), Gaps = 4/298 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +++ ++ MK +    + +T +++++   K   +D A E+ N+   +     V+ Y++L+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC++     A  L+  M ++G  PD  T A ++NA   +GK+  A   L+ M  +G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + L+ GL  AG ++ A   + KM+      D+ ++  +I  +C+SG+      ++
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  D   Y  L+  +++ G+ D A  LL   +    KP   ++  ++ G+ + 
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVVDGLCKA 559

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           G+ +DA      M   G P +   Y  ++    + G+ V+ A  LV+      T + R
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGK-VDKARQLVDDASETHTSVER 616



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 1/225 (0%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +KG+     TY   ++A   +   + A E  Q+M  +G+ P      ++++GL  AG L+
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKIL 198
            AK+++ ++ + G  L++ T++ +I+  CK+  V+  +E++ ++   G C  DV T+  L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPDVVTFNSL 150

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +     + EAF L   + + G +P    Y+ ++ G+ + G+ D+A   + EM  K  
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSC 210

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P+   YT  +T   +  R  EA +   +M   G    +  F  V
Sbjct: 211 VPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 140/301 (46%), Gaps = 2/301 (0%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP  LS  L+I+   K GLVD A+EVF +     C+  V  Y +L+  LC+      A
Sbjct: 167 NISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEA 226

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+  M  +G  P   T+ +L+N  C  G M    + +  M  KG  P     + ++ G
Sbjct: 227 VLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIING 286

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G L+ A  ++++M+    V +  T+ +LI  + K G     V +  S+ + G  A+
Sbjct: 287 LCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHAN 346

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI  + K    +EA  L   +VE G +P   +Y+ +I G+ R G+ D+A     
Sbjct: 347 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILC 406

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  PN   Y+ LI    + G   +A     EM +    P   C+ ++  GL   G
Sbjct: 407 EMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDG 466

Query: 312 K 312
           K
Sbjct: 467 K 467



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI- 79
           L+   +GK  L + A+E+F +    F C++ V  +NS+L  + +  LFH A       + 
Sbjct: 104 LVFRAYGKAHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVG 163

Query: 80  -RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    P+  ++ +++ A C  G +  A E  +EM+ +   P V     L+ GL     +
Sbjct: 164 GKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRI 223

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++++M  +G      TFN LI  +CK G++    ++  ++   G   +  TY  +
Sbjct: 224 DEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTI 283

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G +D+A  LL  +V     P    Y  +I G+ ++G+  D     S ++ +GH
Sbjct: 284 INGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGH 343

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   Y+ LI+   +  +  EA     +M E G  P    +  + DGL   GK D A++
Sbjct: 344 HANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKE 403

Query: 319 I 319
           I
Sbjct: 404 I 404



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 133/313 (42%), Gaps = 4/313 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T +++I    K G +    ++ +      C    + YN+++  LC       A +L+
Sbjct: 241 SSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLL 300

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            RM+    VP+  TY  L+N     G+  +    L  + ++G +        L+ GL   
Sbjct: 301 DRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKE 360

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
              E A  +  KM+++G   ++  +++LI+ +C+ G+++   E+   +   G   +  TY
Sbjct: 361 EKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTY 420

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G   +A R+   + ++   P    Y+ +I G+   G+  +A   ++ M  
Sbjct: 421 SSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLG 480

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM--TEMGLTPISRCFDLVTDGLKNCGKH 313
           +G  P+   Y+ +I      G          EM   E    P    ++++   L  C ++
Sbjct: 481 RGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRAL--CKQN 538

Query: 314 DLAEKIELLEVSL 326
            ++  I+LL   L
Sbjct: 539 SISHAIDLLNSML 551



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 127/288 (44%), Gaps = 7/288 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II      G +D AV + ++  A  C    + Y +L+  L +         L+  +
Sbjct: 279 TYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSL 338

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   ++  Y+ L++      K  EA    ++M +KG  P +     L+ GL   G L
Sbjct: 339 EERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKL 398

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK+++ +M+ +G   +  T++SLI+   K+G  +  + ++  + K     +   Y +L
Sbjct: 399 DEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVL 458

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM--KIK 256
           I  + + G + EA  +  +++  G +P    Y+ +I G+   G  +     F+EM  +  
Sbjct: 459 IHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQES 518

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              P+   Y +L+    +      A + L  M + G  P     DL+T
Sbjct: 519 DSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNP-----DLIT 561



 Score = 77.4 bits (189), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 16/251 (6%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+   + G +D A E+  +     C      Y+SL+    +      A  + + M +
Sbjct: 386 SALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 445

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
              VP++  Y++L++  C  GK+REA      M  +G  P V     ++ GL NAG +E 
Sbjct: 446 NNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEV 505

Query: 141 AKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             ++ N+M+ Q      D+ T+N L+  +CK   +   +++  S+   G   D+ T  I 
Sbjct: 506 GLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIF 565

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +           A R   N  +DG +    L    +  + +R +   A      M  K  
Sbjct: 566 L----------NALREKLNPPQDGREFLDEL----VVRLHKRQRIVGAAKIIEVMLQKFL 611

Query: 259 PPNRPVYTMLI 269
           PPN   +  +I
Sbjct: 612 PPNASTWERII 622



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 22/167 (13%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           S +I      G V+  +++FN+  C   + Q  V+ YN LL ALC+      A  L+  M
Sbjct: 491 SSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSM 550

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR---DLLVQGLLNA 135
           + +G  PD  T  I +NA      +RE             NPP  GR   D LV  L   
Sbjct: 551 LDRGCNPDLITCNIFLNA------LREK-----------LNPPQDGREFLDELVVRLHKR 593

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             +  A +++  M+++    +  T+  +I  +CK  +V+  ++  +S
Sbjct: 594 QRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQAIIDKCWS 640


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 143/309 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   L ++    + +I+ FG  GLV+  + V+ +         +  YN L+  L     
Sbjct: 174 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 233

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M     VPD  TY I++  +C +GK+++A E  ++M  K   P       
Sbjct: 234 IESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMT 293

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q   +    ++   +  +M ++G  +   +++ +I  +CK  +      ++ ++ + G
Sbjct: 294 LIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG 353

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             A+V+ Y  LI + SK G ++EA RL   +  +G +P    Y+ ++ G+ + G+ DD  
Sbjct: 354 CRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGM 413

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F   + KG   N   Y  LI   G+ GR  +A N   EM+E G    S C++ + D L
Sbjct: 414 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDAL 473

Query: 308 KNCGKHDLA 316
              GK D A
Sbjct: 474 AKHGKIDQA 482



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 139/317 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E+M    +     T +++I+ + K G +  A+E F      N +   + Y +L+ A 
Sbjct: 239 KVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQAC 298

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
              + F    +L   M  +G      +Y++++   C   K  EA    + M+ KG    V
Sbjct: 299 YSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANV 358

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+      G +E A ++  +M  +GF  D  T++ L+  +CKSG ++  +E++  
Sbjct: 359 AIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDF 418

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
               G+  +   Y  LI  + KAG I++A  L   + E G       Y  II  + + G+
Sbjct: 419 CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGK 478

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F  M+ +G       +T+LI    +  +  EA  +  +M + G+TP    F  
Sbjct: 479 IDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRA 538

Query: 303 VTDGLKNCGKHDLAEKI 319
           +  GL  CGK   A KI
Sbjct: 539 LAIGLCLCGKVARACKI 555



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 1/312 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L + P + SL+I    K      A  VF       C+  V +Y +L+ +  +   
Sbjct: 314 MEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGS 373

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  RM  +GF PD  TY++LVN  C SG++ +  E      +KG          
Sbjct: 374 MEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYAS 433

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG +E A+ +  +M ++G   D   +N++I+ + K G+++  + ++  + + G
Sbjct: 434 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 493

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               V T+ ILI  + K    +EA +    +++ G  P  + +  +  G+   G+   A 
Sbjct: 494 CDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARAC 553

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               ++   G  P      M+ T+C +  R  EA      + + G     R   ++ + L
Sbjct: 554 KILDDLAPMGIIPETAFEDMINTLC-KAQRIKEACKLADGIVDRGREIPGRIRTVLINAL 612

Query: 308 KNCGKHDLAEKI 319
           +  G  DL  K+
Sbjct: 613 RKAGNSDLVIKL 624



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 1/242 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E MK         T S+++    K G +D+ +E+F+ C         + Y SL+  L
Sbjct: 379 RLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL 438

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +      A  L   M  KG   D   Y  +++A    GK+ +A      M ++G +  V
Sbjct: 439 GKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTV 498

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ GL      E A +  +KMI +G    + +F +L   +C  G+V    ++   
Sbjct: 499 YTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKILDD 558

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +  +G+  + + ++ +I  + KA  I EA +L   +V+ G +    +   +I  + + G 
Sbjct: 559 LAPMGIIPE-TAFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRKAGN 617

Query: 243 FD 244
            D
Sbjct: 618 SD 619



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+  GK G +++A  +F + +   C +    YN+++ AL +      A AL  RM  +G
Sbjct: 434 LIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 493

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                 T+ IL++      K  EA +F  +M DKG  P V     L  GL   G +  A 
Sbjct: 494 CDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARAC 553

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++++ +   G + +   F  +I T+CK+  ++   ++   +   G         +LI A+
Sbjct: 554 KILDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINAL 612

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            KAG  D   +L+H+ +  G+    S+
Sbjct: 613 RKAGNSDLVIKLMHSKIGIGYDRMGSI 639



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 86/238 (36%), Gaps = 35/238 (14%)

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+ D+G        + L++   N G +E    +  +M + G    L T+N L+  +  S 
Sbjct: 173 ELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSM 232

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +E   +++  +    +  D  TY I+I    KAG + +A     ++     KP    Y 
Sbjct: 233 FIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYM 292

Query: 232 PIIKGMFRRGQFD-----------------------------------DAFCFFSEMKIK 256
            +I+  +    FD                                   +A+  F  M  K
Sbjct: 293 TLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQK 352

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           G   N  +YT LI    + G   EA      M   G  P +  + ++ +GL   G+ D
Sbjct: 353 GCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLD 410


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M+  +   +   L  S    + ++      G   +AV+ F++   F  +    +YN++L 
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILK 180

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           AL +  +   A AL  RM+  G  P++ TY +L++  C  G   +A +   EM D+G  P
Sbjct: 181 ALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMP 240

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V+   +L+  L NAG ++ A Q++  M  +G + D  T+N+ +  +CK G V    +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G    +  Y  LI  + +A   DE F     ++E    P   LY  +I+G    
Sbjct: 301 VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEA 360

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRG 275
           G+ +DA  F   MK KG  P+   Y T+L  +C  G
Sbjct: 361 GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 15/289 (5%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP  +  +++I    + G +++A+   +             YN++L  LC+      A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M++   V D  T  I++   C  G + EA +   EM + G +P V   + L+ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 LLNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSGEVEFCVE 178
               G LE A+ + +KM             +    V D E+   L+  +C+SG+V    +
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYK 521

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  S+   G+  DV TY  LI  + KA  +D A RL   L   G  P    Y  +I G+ 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           R  + +DA   F  +   G  P+  +Y  ++    R  +  +A N  ++
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLD 630



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 152/324 (46%), Gaps = 18/324 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++      G +D AV++        C    + YN+ L  LC+V   + A+  +  +  
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            GF    + Y+ L++    + +  E   + + M ++  +P V    ++++G   AG +E 
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIED 365

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A   ++ M K+GFV D   +N++++ +C  G++E    +   + +  L  D +T  I+I 
Sbjct: 366 ALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G++DEA ++   + E G  P    Y  +I G +R G+ ++A   F +M++  +P 
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPS 485

Query: 261 --------------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                         +  +  ++  MC + G+ ++A   L  + + G+ P    ++ + +G
Sbjct: 486 LFLRLTLGANQVCDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544

Query: 307 LKNCGKHDLAEKIELL-EVSLRSV 329
           L  C   +L   + L  E+ L+ +
Sbjct: 545 L--CKARNLDGAVRLFKELQLKGI 566



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 37/282 (13%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G       +A LV A  S+G+  +A +    M +    P     + +++ L+++G +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + N+M+  G   +  T+N L++ +CK G     ++M+  +   G+  +V  Y +L+ +
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKP---------------------FPSL----------- 229
           +  AG IDEA +LL ++ + G  P                     F  L           
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 230 ---YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+F+  +FD+ F ++  M  +   P+  +YT++I  C   GR  +A ++L 
Sbjct: 312 LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLD 371

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            M + G  P + C++ V   L + G  + A  +  E+L+ +L
Sbjct: 372 VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNL 413



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 144/330 (43%), Gaps = 18/330 (5%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA------LCEV 65
           NL +   T +++I    K GLVD A+++F++     C   V+ YN+L+        L E 
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 66  K-LFH------GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + LFH           +R  +    V D  +   LV+  C SG++ +A + L+ + D G 
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   + L+ GL  A  L+ A ++  ++  +G   D  T+ +LI+ + ++      + 
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL-LHNLVEDGHKPFPSLYAPIIKGM 237
           ++ ++ + G    +S Y  ++ ++ +   + +A  L L  L +  + P  S         
Sbjct: 592 LFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKE 651

Query: 238 FRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
              G  DD      ++  + G+  + P    LI +C +  R  +A      + E G+   
Sbjct: 652 IEDGSLDDGVRELIKIDQEYGYISSNPYTIWLIGLC-QVRRTDDALRIFHTLQEFGIDIT 710

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
             C  L+ + L  C   +L   ++++  +L
Sbjct: 711 PACCALLINYL--CWDRNLNAAVDIMLYAL 738


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           +  +G+ G V  AV+VF +   +NC+  +  YN+++  L E   F+ A+ +  RM  +G 
Sbjct: 83  MRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGI 142

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD  T+ I + ++C + +   A   L  M  +G          ++ G     Y   A +
Sbjct: 143 APDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYE 202

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + NKM++ G    + TFN L+  +CK G ++   ++   V K G+C ++ T+ I I  + 
Sbjct: 203 LFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLC 262

Query: 204 KAGMID-------EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           + G+++       EA   LH +V  G +P    Y  II G  + G+  DA     + K K
Sbjct: 263 RKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFK 322

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           G  P+   Y  LI    + G    A     E    GL P    ++ +  GL   G
Sbjct: 323 GFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG 377



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 149/336 (44%), Gaps = 38/336 (11%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G +D+A+ +F +      +  ++LYN+L+  L +  L   A  L+  M ++G  PD  
Sbjct: 340 QDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIW 399

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +++N  C  G + +A   L     KG+ P +   + L+ G      +++A  +++ M
Sbjct: 400 TYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM 459

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   D+ T+NS++  +CK+ + E  +E +  + + G   ++ TY ILI ++ KA  +
Sbjct: 460 WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKV 519

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF------------C-------- 248
            EA  LL  +   G  P P  +  +I G    G  D+A+            C        
Sbjct: 520 TEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNI 579

Query: 249 ----------------FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
                            F EM  KG  P+   Y ++I    + G      ++L++  E+G
Sbjct: 580 MINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIG 639

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             P    F  V + L  C +H + E + ++ + +R+
Sbjct: 640 FVPSLTTFGRVINCL--CVQHRVHEAVGIVHLMVRT 673



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 120/268 (44%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++++   +V     A  +++    KGFVPD+ TY  L+   C  G +  A    +E  
Sbjct: 296 YNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEAL 355

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +   + L++GL   G +  A Q++N M K+G   D+ T+N +I  +CK G V 
Sbjct: 356 GKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVS 415

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +  +    G   D+ T+  LI    K   +D A  +L ++   G  P    Y  I+
Sbjct: 416 DANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSIL 475

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  + +D    F  +  KG  PN   Y +LI    +  +  EA + L E+   GL 
Sbjct: 476 NGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLI 535

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
           P    F  V  G   C   DL E  +L 
Sbjct: 536 PDPVSFGTVISGF--CNNGDLDEAYQLF 561



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 141/308 (45%), Gaps = 8/308 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F +      A E+FNK         +  +N L+  LC+         L+ ++++ G
Sbjct: 187 VISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNG 246

Query: 83  FVPDKRTYAILVNAWCSSG-------KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             P+  T+ I +   C  G       K+ EA+ +L +M +KG  P     + ++ G    
Sbjct: 247 VCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKV 306

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A +++     +GFV D  T+ SLI  +C+ G+++  + ++      GL   +  Y
Sbjct: 307 GKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLY 366

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  +S+ G++ +A +L++++ ++G  P    Y  +I G+ + G   DA    +    
Sbjct: 367 NTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIA 426

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HD 314
           KG+ P+   +  LI    +  +   A   L  M   G+TP    ++ + +GL    K  D
Sbjct: 427 KGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPED 486

Query: 315 LAEKIELL 322
           + E  +++
Sbjct: 487 VMETFKMI 494



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 136/300 (45%), Gaps = 6/300 (2%)

Query: 1   MWKTIELMKPYN---LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           + K ++LM   +   +S    T +L+I    K G V +A  + N   A      +  +N+
Sbjct: 379 VLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNT 438

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C+      A  ++  M   G  PD  TY  ++N  C + K  +  E  + + +KG
Sbjct: 439 LIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG 498

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   ++L++ L  A  +  A  ++ ++  +G + D  +F ++I   C +G+++   
Sbjct: 499 CLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAY 558

Query: 178 EMYYSV-CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++  +  +  +C  V+TY I+I A S+   +D A +L H + + G  P    Y  +I G
Sbjct: 559 QLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDG 618

Query: 237 MFRRGQFDDAFCF-FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             + G  +  + F   E++I G  P+   +  +I       R  EA   +  M   G+ P
Sbjct: 619 FCKVGNVNSGYDFLLKEIEI-GFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVP 677



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K   +DNA+ + +   +      V+ YNS+L  LC+           + +
Sbjct: 435 TFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMI 494

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG +P+  TY IL+ + C + K+ EA + L+E+ ++G  P       ++ G  N G L
Sbjct: 495 MEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDL 554

Query: 139 ESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + A Q+  +M +Q  +   + T+N +I    +  +++   ++++ +   G   D  TY++
Sbjct: 555 DEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRV 614

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K G ++  +  L   +E G  P  + +  +I  +  + +  +A      M   G
Sbjct: 615 MIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTG 674

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             P       ++T+     + V A   +VE            ++L+ DG++N
Sbjct: 675 VVPE-----AVVTIFDADKKAVAAPKIIVEDLLKKSHITYYAYELLYDGIRN 721



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 12/264 (4%)

Query: 68  FHGAYALIRRMIR--KGFVPDKRTYAILVNA---WCSSGKMREAQEFLQEMSDKGFNPPV 122
           FHG +  + R++   +  V +     + V+A   +   GK++EA +  + M      P +
Sbjct: 52  FHGEFDAMERVLMEMRLNVDNSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSI 111

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++  L+  GY   A ++  +M  +G   D+ TF   I++ C++      + +  +
Sbjct: 112 FSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNN 171

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   +   Y  +I    +     EA+ L + ++  G  P  + +  ++  + ++G 
Sbjct: 172 MPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGH 231

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRG------GRFVEAANYLVEMTEMGLTP 295
             +     +++   G  PN   + + I  +C +G       + VEA NYL +M   GL P
Sbjct: 232 LQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEP 291

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               ++ +  G    GK   A +I
Sbjct: 292 DDFTYNTIIYGYSKVGKIQDASRI 315


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 52  VLLYNSLLFALCE-VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           V+  N L+ ALC+  +    A+ L R M  +G  PD  TY  L+N  C  GK+ +A+E L
Sbjct: 155 VVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELL 214

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            EM +KG +P V     L+ GL  +  L+ A +++ +MI  G   ++ T++SL++ +CKS
Sbjct: 215 DEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKS 274

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G     +E+   + +  L  ++ TY  LI  + K G   EA  +L  +   G KP   +Y
Sbjct: 275 GHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMY 334

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             II G+     + +A  F  EM + G  PNR  +T  + M
Sbjct: 335 GRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKM 375



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 1/292 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK  +  V+      I   +G+     +A+ VF+K   F  +     Y ++   L E
Sbjct: 73  LERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKMEDFQVKPTQKSYLTVFDILVE 132

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ-EFLQEMSDKGFNPPVR 123
                 A    + M  KG  P   +  IL+ A C + +  E+     +EM ++G  P   
Sbjct: 133 ENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSY 192

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ GL   G +  AK+++++M ++G    + ++ SLI  +C+S  ++  +E+   +
Sbjct: 193 TYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEM 252

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  +V TY  L+  + K+G   +A  LL  +V     P    Y+ +I G+ + G+ 
Sbjct: 253 IINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKH 312

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +A      M+++G  P+  +Y  +I+       + EAAN++ EM   G++P
Sbjct: 313 REAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISP 364



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 115/243 (47%), Gaps = 7/243 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   LS S  + + +I    +   +D A+E+  +      +  V  Y+SL+  LC+
Sbjct: 214 LDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCK 273

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M+R+  +P+  TY+ L+N  C  GK REA E L  M  +G  P    
Sbjct: 274 SGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGM 333

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMI-------KQGFVLDLETFNSLIETICKSGEVEFCV 177
              ++ GL  A   + A   +++M        +  +   ++  N +++ +C + +     
Sbjct: 334 YGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAF 393

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           ++Y S+   G+  ++ T+  L+    K G +++A R+L  ++ DG  P   ++  ++ G+
Sbjct: 394 QLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGL 453

Query: 238 FRR 240
           + R
Sbjct: 454 WDR 456



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 1/224 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL-NAGYLESAKQ 143
           P +++Y  + +       ++ A  F +EM +KG  P V   ++L++ L  N   +ESA +
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  +M  +G   D  T+ +LI  +CK G++    E+   + + GL   V +Y  LI  + 
Sbjct: 178 LFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLC 237

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           ++  +DEA  LL  ++ +G +P    Y+ ++ G+ + G    A      M  +   PN  
Sbjct: 238 QSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMV 297

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            Y+ LI    + G+  EA   L  M   GL P +  +  +  GL
Sbjct: 298 TYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGL 341



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 113/270 (41%), Gaps = 3/270 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + +++  L  V  F  A  ++ RM ++     +  +  +   +    +  +A     +M 
Sbjct: 53  FGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAIRVFHKME 112

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-V 173
           D    P  +    +   L+   +++ A     +M ++G    + + N LI+ +CK+ E V
Sbjct: 113 DFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETV 172

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E    ++  +   G   D  TY  LI  + K G I +A  LL  + E G  P    Y  +
Sbjct: 173 ESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSL 232

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G+ +    D+A     EM I G  PN   Y+ L+    + G   +A   L  M    L
Sbjct: 233 IHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRL 292

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    +  + +GL   GKH   E +E+L+
Sbjct: 293 LPNMVTYSTLINGLCKEGKH--REAVEILD 320


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 127/261 (48%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y++++  LC+ KL   AY L   M  +G  PD  TY  L+  +C +G++ EA   L 
Sbjct: 150 VVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLN 209

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP +   + L+  L   G ++ +K ++  M K+G   D+  ++ L++  C  G
Sbjct: 210 EMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVG 269

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV+   +++  + + G+  DV +Y I+I  + K   +DEA  LL  ++     P    Y+
Sbjct: 270 EVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYS 329

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+         EM  +G P N   Y  L+    +     +A    ++M E 
Sbjct: 330 SLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKER 389

Query: 292 GLTPISRCFDLVTDGLKNCGK 312
           G+ P    +  + DGL   G+
Sbjct: 390 GIQPNKYTYTALIDGLCKGGR 410



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 148/301 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F   G +  A  + N+    N    +  YN+L+  LC+      +  L+  M
Sbjct: 187 TYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVM 246

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  PD   Y+IL++ +C  G++++A++    M   G NP V   ++++ GL     +
Sbjct: 247 TKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRV 306

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M+ +  + D  T++SLI+ +CK G +   +++   +   G  A++ TY  L
Sbjct: 307 DEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   +D+A  L   + E G +P    Y  +I G+ + G+       F  + +KG+
Sbjct: 367 LDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGY 426

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT++I+   + G F EA     +M + G  P +  F+++   L    ++D AEK
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEK 486

Query: 319 I 319
           +
Sbjct: 487 L 487



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 128/280 (45%), Gaps = 7/280 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           + +TIE     + S  P  +  S II+   K  LVD A +++++  A      V+ Y +L
Sbjct: 137 LLRTIE-----DRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTL 191

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +   C       A+ L+  MI K   P+  TY  L++  C  GK++E++  L  M+ KG 
Sbjct: 192 ICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGV 251

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V    +L+ G    G ++ AKQ+   M++ G   D+ ++N +I  +CK   V+  + 
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +    +  D  TY  LI  + K G I     L   +   G       Y  ++ G+ 
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLC 371

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +    D A   F +MK +G  PN+  YT LI    +GGR 
Sbjct: 372 KNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRL 411



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 135/274 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +  +L +L ++K +    +L ++M  KG VPD  T +IL+N +C  G+M  +   L 
Sbjct: 10  IIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLG 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G+ P     + L++GL   G ++ +    +K++ QGF +D  ++  L+  +CK G
Sbjct: 70  KILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E    +++  ++       DV  Y  +I  + K  ++DEA+ L   +   G  P    Y 
Sbjct: 130 ETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYT 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G    GQ  +AF   +EM +K   PN   Y  LI    + G+  E+ N L  MT+ 
Sbjct: 190 TLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK 249

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           G+ P    + ++ DG    G+   A++I L+ V 
Sbjct: 250 GVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQ 283



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 142/317 (44%), Gaps = 4/317 (1%)

Query: 7   LMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T  L+ +++     G V  ++   +K  A   Q   + Y  LL  LC+
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+R +  +   PD   Y+ +++  C    + EA +   EM+ +G  P V  
Sbjct: 128 IGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVIT 187

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G   AG L  A  ++N+MI +    ++ T+N+LI+T+CK G+V+    +   + 
Sbjct: 188 YTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMT 247

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G+  DV  Y IL+      G + +A ++   +V+ G  P    Y  II G+ +  + D
Sbjct: 248 KKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVD 307

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM  K   P+   Y+ LI    + GR     +   EM   G       ++ + 
Sbjct: 308 EAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLL 367

Query: 305 DGLKNCGKHDLAEKIEL 321
           DGL  C   +L + I L
Sbjct: 368 DGL--CKNQNLDKAIAL 382



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T + +I+   K G V  +  +    T    +  V++Y+ L+   C V     A
Sbjct: 215 NINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKA 274

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M++ G  PD  +Y I++N  C   ++ EA   L+EM  K   P       L+ G
Sbjct: 275 KQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDG 334

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G + +   +  +M  +G   +L T+NSL++ +CK+  ++  + ++  + + G+  +
Sbjct: 335 LCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPN 394

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI  + K G + +   L  +L+  G+      Y  +I G+ + G FD+A    S
Sbjct: 395 KYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKS 454

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +M+  G  PN   + ++I          +A   L EM   GL P
Sbjct: 455 KMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 117/246 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++++ +   G V  A ++F           V  YN ++  LC+ K    A  L+R M+ 
Sbjct: 259 SILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLH 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K  +PD  TY+ L++  C  G++    +  +EM  +G    +   + L+ GL     L+ 
Sbjct: 319 KNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDK 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  KM ++G   +  T+ +LI+ +CK G ++    ++  +   G C DV TY ++I 
Sbjct: 379 AIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMIS 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K GM DEA  +   + ++G  P    +  II+ +  + + D A     EM  KG  P
Sbjct: 439 GLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKGLLP 498

Query: 261 NRPVYT 266
            R  ++
Sbjct: 499 FRNFHS 504



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 133/294 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS++I  F   G +  +  V  K      Q   ++ N+L+  LC       +     ++
Sbjct: 47  TLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  D+ +Y IL+N  C  G+ R A + L+ + D+   P V     ++ GL     +
Sbjct: 107 VAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLV 166

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M  +G   D+ T+ +LI   C +G++     +   +    +  ++ TY  L
Sbjct: 167 DEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTL 226

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + E+  LL  + + G KP   +Y+ ++ G    G+   A   F  M   G 
Sbjct: 227 IDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGV 286

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   Y ++I    +G R  EA N L EM    + P +  +  + DGL   G+
Sbjct: 287 NPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K   +D A ++ +       +   + Y S++   C++ + + A  +I +M
Sbjct: 215 TYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQM 274

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P    +  L++ + S G+  EA + L EM+ +G  P V     L+  L + G +
Sbjct: 275 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 334

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + + MI++G   D  T+ ++I+   K G VE   E+   + K G+  D   Y  L
Sbjct: 335 PEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSL 394

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K   +D+AF +   +V  G KP    +  ++ G+F+ G+ D AF  F EM  K  
Sbjct: 395 MDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEE 454

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP    YT+LI   G+ GR  EA     EM + G+ P    +  +   L   G+   A+
Sbjct: 455 VPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAK 514

Query: 318 KI 319
           K+
Sbjct: 515 KL 516



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 137/300 (45%), Gaps = 3/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   I+  F K  +++ A EV  +     C+  + ++ SLL           AY ++  M
Sbjct: 250 TYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 309

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD   Y  L++   S+G++ EA+     M +KG  P       ++Q     G +
Sbjct: 310 TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 369

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +++  M K G   D   +NSL++   K   V+    +Y  +   G+  +  T+ +L
Sbjct: 370 EAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVL 429

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +  + K G  D AF L   ++E    P P+L  Y  +I G+ + G+  +AF  F EM  +
Sbjct: 430 MHGLFKDGKTDRAFSLFKEMLEKEEVP-PTLVSYTILIDGLGKAGRVSEAFLQFQEMIDR 488

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P    YT LI    + GR  EA   + +M ++G+ P  + +  +  GL +    D A
Sbjct: 489 GIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTA 548



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 133/312 (42%), Gaps = 33/312 (10%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A + FN      C+  V+ + +L+   C+       + L+ + +++ F PD   Y  
Sbjct: 23  MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTS 81

Query: 93  LVNAWCSSG--------------------------------KMREAQEFLQEMSDKGFNP 120
           +++ +C +G                                ++ EA E  +E+   G +P
Sbjct: 82  VIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSP 141

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     ++ GLL AG +E   +   +M     V    T+  +I+ +CK+  +    +++
Sbjct: 142 NVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVF 201

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G   D  TY  LI   SKA  +DEA +LL  ++  G +P    Y  I+ G  + 
Sbjct: 202 EQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKL 261

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              ++A    ++M+ +G  P   ++T L++     GR  EA   L EMT  G  P    +
Sbjct: 262 DMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILY 321

Query: 301 DLVTDGLKNCGK 312
             + D L + G+
Sbjct: 322 TSLIDLLFSTGR 333



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 6/245 (2%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   +Y  +++   S  KM EA +F   M D G  P V     L+ G   AG  +  
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++N+ +K+ F  D+  + S+I   CK+G+++     Y+         DV +Y  +I  
Sbjct: 62  HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLD---TGYFRAVTPKASLDVISYTTVIKG 117

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           ++ +  IDEA  L   L   G  P    Y  +I G+ + G+ +D    F EM      P 
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPT 177

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           R  YT++I    +     +A     +M + G  P +  +  + DG     K D A K  L
Sbjct: 178 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARK--L 235

Query: 322 LEVSL 326
           L+V L
Sbjct: 236 LDVML 240



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 36/274 (13%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A +V  + TA  C   V+LY SL+  L        A  +   MI KG  PD  TY
Sbjct: 297 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             ++  +   G +  A E L+ M+  G  P     + L+ G +    ++ A  + ++M+ 
Sbjct: 357 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 151 QGFVLDLETFNSL------------------------------------IETICKSGEVE 174
            G   +  TFN L                                    I+ + K+G V 
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
                +  +   G+  +  TY  LI +++KAG I EA +L+ ++V+ G  P    Y+ +I
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 536

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            G+      D A+  F EM  +G  PN   Y +L
Sbjct: 537 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 1/225 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   II+ F K G V+ A E+               YNSL+    +++    A+ +  RM
Sbjct: 355 TYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRM 414

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQGLLNAGY 137
           +  G  P+  T+ +L++     GK   A    +EM +K   PP +    +L+ GL  AG 
Sbjct: 415 VASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGR 474

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A     +MI +G + +  T+ SLI ++ K+G +    ++   + KLG+  DV  Y  
Sbjct: 475 VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSA 534

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           LI  +  + M+D A+ +   +++ G  P    Y  + +G    G+
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 137/321 (42%), Gaps = 8/321 (2%)

Query: 3   KTIELMKPYNLSVSPQ------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K  +L   Y  +V+P+      + + +I+       +D A E+F +     C   V+ Y 
Sbjct: 88  KAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYT 147

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +++  L +             M     VP + TY ++++  C +  + +A +  ++M  K
Sbjct: 148 AVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQK 207

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       L+ G   A  ++ A+++++ M+ +G      T+ S++   CK   +   
Sbjct: 208 GCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEA 267

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+   + + G    +  +  L+      G  +EA+++L  +   G  P   LY  +I  
Sbjct: 268 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 327

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTP 295
           +F  G+  +A   F  M  KG  P+   Y  +I    + G  VEAA  ++E M + G+ P
Sbjct: 328 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGN-VEAAGEILELMAKSGVGP 386

Query: 296 ISRCFDLVTDGLKNCGKHDLA 316
               ++ + DG     + D A
Sbjct: 387 DCFAYNSLMDGYVKLERVDQA 407



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 1/203 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +ELM    +       + +++ + K   VD A  V+++  A   +   + +N L+  L +
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFK 435

Query: 65  VKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                 A++L + M+ K  VP    +Y IL++    +G++ EA    QEM D+G  P   
Sbjct: 436 DGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECH 495

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+  L  AG +  AK++V  M+K G   D++ +++LI  +  S  V+   +++  +
Sbjct: 496 TYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEM 555

Query: 184 CKLGLCADVSTYKILIPAVSKAG 206
            K G   +  TYK+L      AG
Sbjct: 556 MKRGCAPNEVTYKVLRRGFRAAG 578


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  124 bits (310), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 132/268 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++ A+C+ +L   AY L   M  KG   D  TY  L+  +C  GK++EA   L 
Sbjct: 199 VVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLN 258

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP V   ++LV  L   G ++ AK ++  M+K     D+ T+++L++      
Sbjct: 259 EMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVY 318

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           EV+    ++ ++  +G+  DV TY ILI    K  M+DEA  L   + +    P    Y+
Sbjct: 319 EVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYS 378

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+    +    EM+ +G P +   Y+ LI    + G    A     +M + 
Sbjct: 379 SLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQ 438

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + P    F ++ DGL   G+   A+++
Sbjct: 439 EIRPNIFTFTILLDGLCKGGRLKDAQEV 466



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 35/332 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+ LV  A  +F++         V+ YN+L++  C V     A  L+  M+ K 
Sbjct: 205 IIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKT 264

Query: 83  FVPDKRTYAILVNAWCSSGKMRE-----------------------------------AQ 107
             P+  TY ILV+A C  GK++E                                   AQ
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
                MS  G  P V    +L+ G      ++ A  +  +M ++  V  + T++SLI+ +
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKSG + +  ++   +   G  ADV TY  LI  + K G +D A  L + + +   +P  
Sbjct: 385 CKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNI 444

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  ++ G+ + G+  DA   F ++  KG+  N   Y ++I    + G   EA   L +
Sbjct: 445 FTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSK 504

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M + G  P +  F+ +   L    ++D AEK+
Sbjct: 505 MEDNGCIPNAFTFETIIIALFKKDENDKAEKL 536



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 127/274 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+         ++ +N +L +  ++K +  A +L  R+  KG  PD  T  I
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G++      L ++  +G+ P     + L++GL   G ++ A    +K++ QG
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F L+  ++ +LI  +CK G+    ++    +       DV  Y  +I A+ K  ++ EA+
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAY 219

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +   G       Y  +I G    G+  +A    +EM +K   PN   Y +L+   
Sbjct: 220 GLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + G+  EA + L  M +  + P    +  + DG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A  VFN  +       V  Y  L+   C+ K+   A  L + M +K  VP   TY+ 
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++    + + EM D+G    V     L+ GL   G+L+ A  + NKM  Q 
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ TF  L++ +CK G ++   E++  +   G   +V TY ++I    K G+++EA 
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +L  + ++G  P    +  II  +F++ + D A     +M  +G
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 134/285 (47%), Gaps = 8/285 (2%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL---FALCEVKLF 68
           +++P   T +++++   K G V  A  V         +  V+ Y++L+   F + EVK  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK-- 321

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  +   M   G  PD  TY IL+N +C +  + EA    +EM  K   P +     L
Sbjct: 322 -KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL  +G +     ++++M  +G   D+ T++SLI+ +CK+G ++  + ++  +    +
Sbjct: 381 IDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             ++ T+ IL+  + K G + +A  +  +L+  G+      Y  +I G  ++G  ++A  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             S+M+  G  PN   +  +I    +     +A   L +M   GL
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/325 (21%), Positives = 136/325 (41%), Gaps = 35/325 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I++ F K      AV + ++      Q  ++  N L+   C +      ++++ +++++G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 83  FVPDKRT-----------------------------------YAILVNAWCSSGKMREAQ 107
           + PD  T                                   YA L+N  C  G  R A 
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAI 184

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           +FL+++  +   P V   + ++  +     +  A  + ++M  +G   D+ T+N+LI   
Sbjct: 185 KFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGF 244

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C  G+++  + +   +    +  +V TY IL+ A+ K G + EA  +L  +++   KP  
Sbjct: 245 CIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ ++ G F   +   A   F+ M + G  P+   YT+LI    +     EA N   E
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGK 312
           M +  + P    +  + DGL   G+
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+         T S +I+   K+G +D A+ +FNK      +  +  +  LL 
Sbjct: 393 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD 452

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A  + + ++ KG+  +  TY +++N  C  G + EA   L +M D G  P
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                + ++  L      + A++++ +MI +G +
Sbjct: 513 NAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 3/308 (0%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T S  ++I  F +    D+AV  F       C+  +  +  L+  LC+  +   A+
Sbjct: 150 IAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF 209

Query: 73  ALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +   M+  GFVP D+  +  +V     + +++EA+E   +M   GF P     + ++ G
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AG+ + A ++++ M+ +  V    T+  L+ ++CK+G +E   E++  +   G   +
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPN 329

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  LI   +K+G + EA  L   +VE G++P    +  +I G+ + G F+ A   F 
Sbjct: 330 SVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFE 389

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM   G  PN   YT +I    + GR   A   +  M   G  P S  +  + DG    G
Sbjct: 390 EMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLG 449

Query: 312 KHDLAEKI 319
           + D A ++
Sbjct: 450 RLDEAAQL 457



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 3/306 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K    ++ P     II    K G +D A  +F +  +  C+     YN L+  LC  
Sbjct: 495 EQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRS 554

Query: 66  K--LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A+AL+  +   G++PD  TY  L    C  G++  A + L+E S +G+N  V 
Sbjct: 555 RENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVV 614

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L  GL   G ++ A  +  +M++QG   D   +  +I  + K  ++E   + +  +
Sbjct: 615 AYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEM 674

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQ 242
              G    V+TY  L+ A+  AG +DEAF     ++  G      + Y  +I G  +  +
Sbjct: 675 IGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALK 734

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A   F +M  +G+ P       L     R G+  +A   L EM   G  P +  F  
Sbjct: 735 VDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTA 794

Query: 303 VTDGLK 308
           + DGL+
Sbjct: 795 ILDGLR 800



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 1/286 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G    A++V +   A  C    + Y  L+ +LC+      A  L R M   G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F P+   Y  L++ +  SG+M+EA     EM + G+ P V    +++ GL  +G  E A 
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAA 385

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +   +M++ G   ++ T+ ++I+ + K G V     +   +   G   D  TY  L+   
Sbjct: 386 KSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGF 445

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMKIKGHPPN 261
            K G +DEA +LL  L +    P   LY+ ++KG+   G  ++     F + K      +
Sbjct: 446 CKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLD 505

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +   +I    + GR  EA      M   G  P +  ++++ +GL
Sbjct: 506 PGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGL 551



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 1/271 (0%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN L+  L   K +   YA+   M++ G  P+  ++ IL+ ++  + +  +A  
Sbjct: 116 QHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVT 175

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETI 167
             + M  K   P +    +LV  L  AG  E A ++ ++M+  GFV  D     +++ T+
Sbjct: 176 CFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTL 235

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K+  V+   E++  + K G   D   Y  +I  ++KAG   EA ++L N++     P  
Sbjct: 236 LKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTE 295

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++  + + G  + A   F  M   G  PN  +YT LI    + GR  EA +   E
Sbjct: 296 VTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDE 355

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           M E G  P      ++ DGL   G  + A K
Sbjct: 356 MVEAGYRPDVITHTVMIDGLCKSGNFEQAAK 386



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 38/336 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G  + A + F +     C+  V+ Y +++  L ++     A+ +++ M
Sbjct: 367 THTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGM 426

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G  PD  TY  L++ +C  G++ EA + L E+     +P ++    LV+GL + G +
Sbjct: 427 IAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSV 486

Query: 139 ES------------------------------------AKQMVNKMIKQGFVLDLETFNS 162
           E+                                    A ++  +M+ +G   D  T+N 
Sbjct: 487 ENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNI 546

Query: 163 LIETICKSGE--VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           LI  +C+S E  VE    + + +  +G   D  TY  L   + K G +D A ++L     
Sbjct: 547 LINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASS 606

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G       Y  +  G+  +GQ D A   F EM  +G  P+   Y  +I    +G +  +
Sbjct: 607 RGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLED 666

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           A  +  EM   G  P    +  +   L + G  D A
Sbjct: 667 ACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEA 702



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 139/307 (45%), Gaps = 1/307 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCE 64
           E+MK         T  ++++   K G+ + A EVF++  A         L+ +++  L +
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLK 237

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  +  +M + GF PD   Y  +++    +G  +EA + L  M  K   P    
Sbjct: 238 AKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVT 297

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +LV  L  AG LE A+++   M   GF  +   + SLI    KSG ++    ++  + 
Sbjct: 298 YGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMV 357

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   DV T+ ++I  + K+G  ++A +    ++  G KP    Y  II+G+ + G+  
Sbjct: 358 EAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVA 417

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +AF     M   G  P+   Y  L+    + GR  EAA  L E+ +   +P  + +  + 
Sbjct: 418 NAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLV 477

Query: 305 DGLKNCG 311
            GL + G
Sbjct: 478 KGLCDGG 484



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 138/312 (44%), Gaps = 4/312 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G ++ A E+F    A   +   ++Y SL+    +      A +L   M
Sbjct: 297 TYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEM 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G+ PD  T+ ++++  C SG   +A +  +EM   G  P V     ++QGL   G +
Sbjct: 357 VEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRV 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A +++  MI  G   D  T+  L++  CK G ++   ++   + K     ++  Y  L
Sbjct: 417 ANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPF-PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  +   G ++     L    +   +   P L   II G+ + G+ D+A   F  M  +G
Sbjct: 477 VKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEG 536

Query: 258 HPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEM-GLTPISRCFDLVTDGLKNCGKHDL 315
             P+   Y +LI  +C      VE A  L+   EM G  P +  +  +  GL   G+ D 
Sbjct: 537 CKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDR 596

Query: 316 AEKIELLEVSLR 327
           A K+ L E S R
Sbjct: 597 AVKM-LEEASSR 607



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 1/151 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K   +++A + F++      +  V  Y +L+ ALC       A+     M+ +G
Sbjct: 654 IINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713

Query: 83  -FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
             V     Y  L++ +C + K+  A +  ++M  +G  P       L  GL+ +G  E A
Sbjct: 714 ELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKA 773

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           ++++ +M   G      TF ++++ + KS E
Sbjct: 774 QELLQEMAAGGSPPHAATFTAILDGLRKSDE 804


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 136/277 (49%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A E++       CQ     Y+ L+  LC++     A  L+R M +KGF P+  TY
Sbjct: 325 GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTY 384

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++++C +G   + +  L+EMS KG     +G + ++  L   G ++ A  ++ +M  
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRS 444

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           QG   D+ ++N++I  +C + ++E    M+ ++ + G+ A+  TY  +I A+ + G   +
Sbjct: 445 QGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQD 504

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RL   ++  G       Y  +IK M + G  D +     EM  KG  PN   Y +LI+
Sbjct: 505 AVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILIS 564

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +  R  +A     +M   GL P    ++ + +GL
Sbjct: 565 ELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGL 601



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S+++    K G + +AV +  +         V+ Y  +L + C+  ++    AL+  
Sbjct: 347 HTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG   + + Y  ++ A C  G+M EA   +QEM  +G NP +   + ++  L N   
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A+ M   ++++G V +  T+N++I  + + G  +  V +   +   G   DV +Y  
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+ K G +D +  LL  + E G KP    Y  +I  + +  +  DA     +M  +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+   Y  LI    + G    A N L ++    + P
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHP 624



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 113/265 (42%), Gaps = 4/265 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A+ +        C    +LY +++ ALC+      A  L+  M+  G   D  T+
Sbjct: 189 GRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 248

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             +V   C  G++REA   +  M  KG  P V     L+QGL      + A+ M+ ++ +
Sbjct: 249 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE 308

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              VL    FN++I      G++    E+Y ++   G   D  TY IL+  + K G I  
Sbjct: 309 LNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISS 364

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RLL  + + G  P    Y  ++    + G +DD      EM  KG   N   Y  +I 
Sbjct: 365 AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 424

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
              + GR  EA   + EM   G  P
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNP 449



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 128/271 (47%), Gaps = 4/271 (1%)

Query: 52  VLLYNSLLFA-LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           V+L+N+++   L E KL   A  L   M  KG  PD  TY+IL++  C  G++  A   L
Sbjct: 311 VVLFNTVIGGCLAEGKLAE-ATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLL 369

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           +EM  KGF P V    +++      G  +  + ++ +M  +G  L+ + +N +I  +CK 
Sbjct: 370 REMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKD 429

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G ++  + +   +   G   D+ +Y  +I  +     ++EA  +  NL+E+G       Y
Sbjct: 430 GRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITY 489

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             II  + R G++ DA     EM + G   +   Y  LI    + G    +   L EM E
Sbjct: 490 NTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAE 549

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            G+ P +  ++++   L  C +  + + +EL
Sbjct: 550 KGIKPNNVSYNILISEL--CKERRVRDALEL 578



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 120/252 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F K+G+ D+   +  + +A         YN +++ALC+      A  LI+ M
Sbjct: 383 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 442

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  +Y  ++   C++ +M EA+   + + ++G        + ++  LL  G  
Sbjct: 443 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 502

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +MI  G  LD+ ++N LI+ +CK G V+  + +   + + G+  +  +Y IL
Sbjct: 503 QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNIL 562

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   + +A  L   ++  G  P    Y  +I G+ + G    A     ++  +  
Sbjct: 563 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 259 PPNRPVYTMLIT 270
            P+   Y +LI+
Sbjct: 623 HPDIITYNILIS 634



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 31/301 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G V  A  + N+     C   V  ++ ++  +C +     A  L+ RM+ KG
Sbjct: 216 VIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKG 275

Query: 83  FVPDKRTYAILVNAWC-------------------------------SSGKMREAQEFLQ 111
            +P   TY  L+   C                               + GK+ EA E  +
Sbjct: 276 CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYE 335

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG  P      +L+ GL   G + SA +++ +M K+GF  ++ T+  ++ + CK+G
Sbjct: 336 TMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNG 395

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +    +   +   GL  +   Y  +I A+ K G +DEA  L+  +   G  P    Y 
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  +    Q ++A   F  +  +G   N   Y  +I    R GR+ +A     EM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 292 G 292
           G
Sbjct: 516 G 516



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 5/251 (1%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMR 104
           F  Q     YN +L  L        A AL RRM+ +  VP    T+ +   A C  G+  
Sbjct: 133 FGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRAN 192

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA   L+ M+  G  P       ++  L + G +  A  ++N+M+  G   D+ TF+ ++
Sbjct: 193 EALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVV 252

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +C  G V     +   +   G    V TY  L+  + +    DEA  +L  + E    
Sbjct: 253 RGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN-- 310

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
               L+  +I G    G+  +A   +  M +KG  P+   Y++L+    + GR   A   
Sbjct: 311 --VVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRL 368

Query: 285 LVEMTEMGLTP 295
           L EM + G  P
Sbjct: 369 LREMEKKGFAP 379



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 4/250 (1%)

Query: 1   MWKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW      +E M    L+++ Q  + +I    K G +D A+ +  +  +  C   +  YN
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++++ LC  +    A  +   ++ +G V +  TY  +++A    G+ ++A    +EM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +  V   + L++ +   G ++ +  ++ +M ++G   +  ++N LI  +CK   V   
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +   GL  D+ TY  LI  + K G +  A  LL  L  +   P    Y  +I  
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 237 MFRRGQFDDA 246
             +    DDA
Sbjct: 636 HCKVRLLDDA 645



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+++ AL     +  A  L + MI  G   D  +Y  L+ A C  G +  +   L+E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M++KG  P     ++L+  L     +  A ++  +M+ QG   D+ T+N+LI  +CK G 
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +   + +   +    +  D+ TY ILI    K  ++D+A  LL+
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G VD ++ +  +      +   + YN L+  LC+ +    A  L ++M+ +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N  C  G M  A   L+++ ++  +P +   ++L+        L+ A 
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 646

Query: 143 QMVNKMI 149
            ++N+ +
Sbjct: 647 MLLNRAM 653



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQF 243
           + G+     +Y +++  +++A    +A  L   +V  D   P    +    + + R G+ 
Sbjct: 132 RFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRA 191

Query: 244 DDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           ++A      M   G  P+  +Y T++  +C +GG   EAA  L EM  MG       FD 
Sbjct: 192 NEALALLRGMARHGCVPDAVLYQTVIHALCDQGG-VTEAATLLNEMLLMGCAADVNTFDD 250

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           V  G+  CG   + E   L++
Sbjct: 251 VVRGM--CGLGRVREAARLVD 269



 Score = 42.0 bits (97), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 5/104 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N+S +     ++I E  K   V +A+E+  +         ++ YN+L+  LC++  
Sbjct: 552 IKPNNVSYN-----ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            H A  L+ ++  +   PD  TY IL++  C    + +A   L 
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 120/249 (48%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YNSL+   C       AY L+  M  +G VPD+RTY   ++  C S ++ EA+    
Sbjct: 327 LITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFD 386

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            ++++G +  V    +L+ G    G ++ A  +  KM+ +    +  TFN+LI  +C +G
Sbjct: 387 SLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAG 446

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  + ++  + K+GL   V T+ ILI  + K G  D+A + L  ++  G KP    Y 
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYN 506

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             I+     G+  +A     +MK +G PP+   YT LI   G+ G    A + L  M + 
Sbjct: 507 AFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDA 566

Query: 292 GLTPISRCF 300
              P    F
Sbjct: 567 DCEPSHHTF 575



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 1/273 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G +D AV +F +     C   V  Y +L+  LC  K  H A  L+  M+ + 
Sbjct: 264 LIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDEMLERN 322

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VPD  TY  L+   C +G +  A   L  M ++G  P  R     +  L  +  +E A+
Sbjct: 323 LVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEAR 382

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + + ++G   ++  ++ LI+  CK G+V+    ++  +       +  T+  LI  +
Sbjct: 383 RLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGL 442

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             AG + EA  L   +V+ G KP    +  +I  M ++G FDDA     +M   G  P  
Sbjct: 443 CSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVA 502

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             Y   I +    G+  EA + +V+M E G+ P
Sbjct: 503 RTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPP 535



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 132/287 (45%), Gaps = 5/287 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+A  VF +    N     + YN L+  LCE      A +L  RM      P+  TY  
Sbjct: 243 VDSAFRVFEEMPNRN----EVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTA 298

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+   C    + +A   L EM ++   P +   + L+ G   AG+L+SA ++++ M ++G
Sbjct: 299 LIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERG 357

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V D  T+   I+ +CKS  VE    ++ S+ + G+ A+V  Y +LI    K G +DEA 
Sbjct: 358 LVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAG 417

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   ++     P    +  +I G+   G   +A   F +M   G  P    + +LI   
Sbjct: 418 CLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRM 477

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G F +A   L +M   G  P++R ++   +   + GK   AE +
Sbjct: 478 LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDM 524



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 136/306 (44%), Gaps = 5/306 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S+   T +L+I  + K G V  A +   K              S +   C  K    A+
Sbjct: 188 VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAF 247

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M  +  V    +Y  L++  C +G++ EA      M D    P V     L++GL
Sbjct: 248 RVFEEMPNRNEV----SYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGL 303

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A  ++++M+++  V DL T+NSLI   C++G ++    +   + + GL  D 
Sbjct: 304 CRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQ 362

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY   I  + K+  ++EA RL  +L E+G      +Y+ +I G  + G+ D+A C F +
Sbjct: 363 RTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEK 422

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   PN   +  LI      G   EA +   +M +MGL P    F+++   +   G 
Sbjct: 423 MLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGD 482

Query: 313 HDLAEK 318
            D A K
Sbjct: 483 FDDAHK 488



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 140/331 (42%), Gaps = 29/331 (8%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LMK   L    +T    I+   K   V+ A  +F+  T       V++Y+ L+  
Sbjct: 347 YRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDG 406

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V     A  L  +M+ K   P+  T+  L++  CS+G ++EA     +M   G  P 
Sbjct: 407 YCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPT 466

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   ++L+  +L  G  + A + + KM+  G      T+N+ IE  C +G+V+   +M  
Sbjct: 467 VYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMV 526

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  TY  LI A  K G+   AF +L ++ +   +P    +  +IK +F + 
Sbjct: 527 QMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKR 586

Query: 242 -----------------------------QFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                                        +FD     F EM+  G  P+   Y  LI+  
Sbjct: 587 YVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGI 646

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +      A   L +M + G++P    F+ V
Sbjct: 647 CKVENLGIALKLLDQMQKEGISPSEMVFNAV 677



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 5/220 (2%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           + Y  L+      G + E  +   EM ++  +  +   +L++      G+++ AKQ + K
Sbjct: 158 KCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCK 217

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           MI+ G   D  T  S I   C+S +V+    ++  +       +  +Y  LI  + +AG 
Sbjct: 218 MIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPN----RNEVSYNQLIHGLCEAGR 273

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  L   + +D   P    Y  +IKG+ R+     A     EM  +   P+   Y  
Sbjct: 274 IDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK-NVHKAMGLLDEMLERNLVPDLITYNS 332

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           LI    R G    A   L  M E GL P  R +    D L
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFL 372



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 120/318 (37%), Gaps = 29/318 (9%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G  D+A +   K  +   +     YN+ +   C       A  ++ +M
Sbjct: 469 TFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQM 528

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY  L+ A+   G    A + L+ M D    P       L++ L +  Y+
Sbjct: 529 KEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYV 588

Query: 139 ---------ESAK--------------------QMVNKMIKQGFVLDLETFNSLIETICK 169
                    ES                      ++  +M K G   D + +  LI  ICK
Sbjct: 589 VEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICK 648

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
              +   +++   + K G+      +  +I    K     EA  ++ +++  GH P    
Sbjct: 649 VENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEH 708

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
              +I G++  G+ +     F +++  G+  +   + +LI    + G   E +    EM 
Sbjct: 709 CKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEME 768

Query: 290 EMGLTPISRCFDLVTDGL 307
           + G     R + ++T  L
Sbjct: 769 KNGCNFSPRTYSILTQKL 786



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 23/275 (8%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMRE 105
           N +  V  Y SLL  +   K+      +I  MI+  +  PD    A+ V+  C     + 
Sbjct: 96  NFKHNVDSYASLLTLIDHHKIVSDVPKIIVSMIKCCYSAPD----ALFVSDICR----KM 147

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           +++ + ++S K +N        L+  L   G ++   Q+  +M+++   +D+ TFN +I 
Sbjct: 148 SKDDITKLSLKCYNE-------LLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMIN 200

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             CK G V+   +    + + GL  D  T    I    ++  +D AFR+   +       
Sbjct: 201 VYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNRNEVS 260

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANY 284
               Y  +I G+   G+ D+A   F  MK     PN   YT LI  +C +     +A   
Sbjct: 261 ----YNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVH--KAMGL 314

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           L EM E  L P    ++ +  G    G  D A ++
Sbjct: 315 LDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349


>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
           Japonica Group]
 gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
 gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
          Length = 665

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  VD A E+ ++    + Q  V +YN+L+           AY  +  M R G  PD  
Sbjct: 347 KNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVV 406

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY IL+N +CS G   +A+  +++M   G NP     ++L++GL  A  L+ A   V+  
Sbjct: 407 TYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDH 466

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   D+ + N LI+  C++ +V   + ++  +   G+ AD  TY ILI  +   G  
Sbjct: 467 MEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYS 526

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   ++     P  ++Y  ++  + + G F  A   F +M  K   P+   +  L
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I   G+  R VEA +   EM   G+ P +  F  +  GL + GK  LA +I
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEI 637



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 8/318 (2%)

Query: 9   KPYNLSV------SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K YN+++      +P T S  I    +   ++   E+      F C       N  +  L
Sbjct: 216 KYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYL 275

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C     + A  ++ +M  KG  PD  TY  +V+  C   +  EA    +EM  +G  P V
Sbjct: 276 CGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDV 335

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL     ++ A ++ ++M+     L++  +N+LI    ++G +E   +    
Sbjct: 336 VACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSF 395

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G   DV TY IL+      GM D+A  L+  +   G  P    Y  ++KG+ +  Q
Sbjct: 396 MQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQ 455

Query: 243 FDDAFCFFSE-MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            D AF F S+ M++ G         ++   C R  +   A N   EM   G+   +  + 
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFC-RAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++ +GL   G  +LAE++
Sbjct: 515 ILINGLFGIGYSNLAEEL 532



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 2/294 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +++  + + G  D+ +E F++     C++  + YN  +  + +   F          + K
Sbjct: 165 VLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAK 224

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           GF     TY+  + A C S ++   +E L +M   G  P     ++ V  L     L  A
Sbjct: 225 GFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDA 284

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            QMV KM  +G   D+ T+ +++  +C        V ++  + + GL  DV     LI  
Sbjct: 285 LQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFG 344

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K   +DEAF L   ++    +   S+Y  +I G +R G  + A+   S M+  G  P+
Sbjct: 345 LCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPD 404

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
              Y +L+      G   +A N + +M   G+ P    ++++  GL  C  H L
Sbjct: 405 VVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGL--CKAHQL 456



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 117/270 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +KT+  M+         T ++++  +   G+ D A  +  K            YN LL  
Sbjct: 390 YKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKG 449

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+A +   +  G   D  +  IL++A+C + K+  A    +EM  KG    
Sbjct: 450 LCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQAD 509

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL   GY   A+++ ++M+    V ++  +N ++  +CK G  +   ++++
Sbjct: 510 AVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFW 569

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  D  T+  LI  + K+    EA  L   +   G +P    +  II G+   G
Sbjct: 570 QMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEG 629

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +   A+  +  M   G   +R V   LI++
Sbjct: 630 KATLAYEIWEYMMENGIILDRDVSERLISV 659



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I      G  + A E+F++         V +YN +L  LC+V  F  A  +  +M
Sbjct: 512 TYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQM 571

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  T+  L+     S +  EA +  +EM  KG  P       ++ GLL+ G  
Sbjct: 572 TQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKA 631

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             A ++   M++ G +LD +    LI  +
Sbjct: 632 TLAYEIWEYMMENGIILDRDVSERLISVL 660


>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
          Length = 665

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 138/291 (47%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  VD A E+ ++    + Q  V +YN+L+           AY  +  M R G  PD  
Sbjct: 347 KNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVV 406

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY IL+N +CS G   +A+  +++M   G NP     ++L++GL  A  L+ A   V+  
Sbjct: 407 TYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQLDKAFAFVSDH 466

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   D+ + N LI+  C++ +V   + ++  +   G+ AD  TY ILI  +   G  
Sbjct: 467 MEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQADAVTYGILINGLFGIGYS 526

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   ++     P  ++Y  ++  + + G F  A   F +M  K   P+   +  L
Sbjct: 527 NLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQMTQKEVSPDTVTFNTL 586

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I   G+  R VEA +   EM   G+ P +  F  +  GL + GK  LA +I
Sbjct: 587 IYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKATLAYEI 637



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 138/318 (43%), Gaps = 8/318 (2%)

Query: 9   KPYNLSV------SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K YN+++      +P T S  I    +   ++   E+      F C       N  +  L
Sbjct: 216 KYYNMALAKGFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYL 275

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C     + A  ++ +M  KG  PD  TY  +V+  C   +  EA    +EM  +G  P V
Sbjct: 276 CGHNRLYDALQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDV 335

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL     ++ A ++ ++M+     L++  +N+LI    ++G +E   +    
Sbjct: 336 VACGALIFGLCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSF 395

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G   DV TY IL+      GM D+A  L+  +   G  P    Y  ++KG+ +  Q
Sbjct: 396 MQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQ 455

Query: 243 FDDAFCFFSE-MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            D AF F S+ M++ G         ++   C R  +   A N   EM   G+   +  + 
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFC-RAKKVNSALNLFKEMGYKGIQADAVTYG 514

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++ +GL   G  +LAE++
Sbjct: 515 ILINGLFGIGYSNLAEEL 532



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 128/294 (43%), Gaps = 2/294 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +++  + + G  D+ +E F++     C++  + YN  +  + +   F          + K
Sbjct: 165 VLLAGYARAGKFDSVIETFDEMVTSGCREFGVDYNRFIGVMIKNCCFDLVEKYYNMALAK 224

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           GF     TY+  + A C S ++   +E L +M   G  P     ++ V  L     L  A
Sbjct: 225 GFCLTPFTYSRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDA 284

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            QMV KM  +G   D+ T+ +++  +C        V ++  + + GL  DV     LI  
Sbjct: 285 LQMVEKMTMKGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMVRRGLKPDVVACGALIFG 344

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K   +DEAF L   ++    +   S+Y  +I G +R G  + A+   S M+  G  P+
Sbjct: 345 LCKNQKVDEAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPD 404

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
              Y +L+      G   +A N + +M   G+ P    ++++  GL  C  H L
Sbjct: 405 VVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGL--CKAHQL 456



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 117/270 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +KT+  M+         T ++++  +   G+ D A  +  K            YN LL  
Sbjct: 390 YKTVSFMQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKG 449

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+A +   +  G   D  +  IL++A+C + K+  A    +EM  KG    
Sbjct: 450 LCKAHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEMGYKGIQAD 509

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL   GY   A+++ ++M+    V ++  +N ++  +CK G  +   ++++
Sbjct: 510 AVTYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFW 569

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  D  T+  LI  + K+    EA  L   +   G +P    +  II G+   G
Sbjct: 570 QMTQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEG 629

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +   A+  +  M   G   +R V   LI++
Sbjct: 630 KATLAYEIWEYMMENGIILDRDVSERLISV 659



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I      G  + A E+F++         V +YN +L  LC+V  F  A  +  +M
Sbjct: 512 TYGILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHAQKIFWQM 571

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  T+  L+     S +  EA +  +EM  KG  P       ++ GLL+ G  
Sbjct: 572 TQKEVSPDTVTFNTLIYWLGKSSRAVEALDLFKEMRTKGVEPDNLTFRYIISGLLDEGKA 631

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             A ++   M++ G +LD +    LI  +
Sbjct: 632 TLAYEIWEYMMENGIILDRDVSERLISVL 660


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 126/259 (48%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I+   K G +D+A E+ ++      Q  +  YNS++  LC+      A  L+   
Sbjct: 881  TYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF 940

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               G   D  TY  L++A+C SG+M +AQE L EM  KG  P +   ++L+ G    G L
Sbjct: 941  EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGML 1000

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            E  ++++N M+ +G   +  TFN L++  C    ++    +Y  +C  G+  D  TY+ L
Sbjct: 1001 EDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENL 1060

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            +     A  + EA+ L   +   G     S Y+ +IKG F+R +F +A   F +M+  G 
Sbjct: 1061 VKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGL 1120

Query: 259  PPNRPVYTMLITMCGRGGR 277
              ++ ++        +G R
Sbjct: 1121 AADKEIFDFFSDTKYKGKR 1139



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 135/301 (44%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            + S +I  + + G +D   ++  K      +     Y S++  LC +     A      M
Sbjct: 706  SYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEM 765

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            I +G +PD   Y  LV+ +C  G +R A +F  EM  +   P V     ++ G    G +
Sbjct: 766  IGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              A ++ ++M+ +G   D+ TF  L+   CK+G ++    ++  + + G   +V TY  L
Sbjct: 826  VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  + K G +D A  LLH + + G +P    Y  I+ G+ + G  ++A     E +  G 
Sbjct: 886  IDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 945

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
              +   YT L+    + G   +A   L EM   GL P    F+++ +G    G  +  EK
Sbjct: 946  NADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 1005

Query: 319  I 319
            +
Sbjct: 1006 L 1006



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 149/321 (46%), Gaps = 3/321 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKH-GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           K  E M  Y L +S  + ++ +    K       A+ VF +         V  YN ++  
Sbjct: 619 KVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHF 678

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +C++   + A+ L+  M  KG+ PD  +Y+ ++N +C  G++ +  + +++M  KG  P 
Sbjct: 679 VCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPN 738

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++  L     L  A++  ++MI QG + D   + +L++  CK G++    + +Y
Sbjct: 739 SYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFY 798

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  DV TY  +I    + G + EA +L H ++  G +P    +  ++ G  + G
Sbjct: 799 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAG 858

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
              DAF   + M   G  PN   YT LI    + G    A   L EM ++GL P    ++
Sbjct: 859 HIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 918

Query: 302 LVTDGLKNCGKHDLAEKIELL 322
            + +GL  C   ++ E ++L+
Sbjct: 919 SIVNGL--CKSGNIEEAVKLV 937



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 6/310 (1%)

Query: 17   PQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            P T+  + +++ F K G +  A + F +  + +    VL Y +++   C++     A  L
Sbjct: 772  PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 831

Query: 75   IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
               M+ +G  PD  T+  L+N +C +G +++A      M   G +P V     L+ GL  
Sbjct: 832  FHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 891

Query: 135  AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
             G L+SA +++++M K G   ++ T+NS++  +CKSG +E  V++       GL AD  T
Sbjct: 892  EGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVT 951

Query: 195  YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            Y  L+ A  K+G +D+A  +L  ++  G +P    +  ++ G    G  +D     + M 
Sbjct: 952  YTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 1011

Query: 255  IKGHPPNRPVYTMLITM-CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             KG  PN   +  L+   C R       A Y  +M   G+ P  + ++ +  G  +C   
Sbjct: 1012 AKGIAPNATTFNCLVKQYCIRNNLKAATAIY-KDMCSRGVEPDGKTYENLVKG--HCNAR 1068

Query: 314  DLAEKIELLE 323
            ++ E   L +
Sbjct: 1069 NMKEAWFLFQ 1078



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 135/301 (44%)

Query: 1    MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            +WK IE MK   L  +  T   II    +   +  A E F++          ++Y +L+ 
Sbjct: 723  VWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVD 782

Query: 61   ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              C+      A      M  +   PD  TY  +++ +C  G M EA +   EM  +G  P
Sbjct: 783  GFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEP 842

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
             +     L+ G   AG+++ A ++ N MI+ G   ++ T+ +LI+ +CK G+++   E+ 
Sbjct: 843  DIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELL 902

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            + + K+GL  ++ TY  ++  + K+G I+EA +L+      G       Y  ++    + 
Sbjct: 903  HEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKS 962

Query: 241  GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            G+ D A    +EM  KG  P    + +L+      G   +    L  M   G+ P +  F
Sbjct: 963  GEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 1022

Query: 301  D 301
            +
Sbjct: 1023 N 1023



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 122/268 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++++   C        + LI +M +KG  P+  TY  ++   C   K+ EA+E   
Sbjct: 704 VISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFS 763

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +G  P       LV G    G + +A +   +M  +    D+ T+ ++I   C+ G
Sbjct: 764 EMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 823

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    ++++ +   GL  D+ T+  L+    KAG I +AFR+ +++++ G  P    Y 
Sbjct: 824 DMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYT 883

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G  D A     EM   G  PN   Y  ++    + G   EA   + E    
Sbjct: 884 TLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA 943

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL   +  +  + D     G+ D A++I
Sbjct: 944 GLNADTVTYTTLMDAYCKSGEMDKAQEI 971



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 12/238 (5%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQ-------EMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           D +    L++++    K+   + F+Q          D G +P  R  D+  Q L+  G L
Sbjct: 557 DLKVAQSLISSFWERPKLNVTESFVQFFDLLVYTYKDWGSDP--RVFDVFFQVLVEFGML 614

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+++  KM+  G VL +++ N  +  + K   +    + ++    ++G+C +V++Y I
Sbjct: 615 PEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNI 674

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  V + G I+EA  LL  +   G+ P    Y+ +I G  R G+ D  +    +MK KG
Sbjct: 675 VIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG 734

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             PN   Y  +I +  R  +  EA     EM   G+ P +  +  + DG   C + D+
Sbjct: 735 LKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGF--CKRGDI 790



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 92/209 (44%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            L+    T + +++ + K G +D A E+  +      Q  ++ +N L+   C   +     
Sbjct: 945  LNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGE 1004

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             L+  M+ KG  P+  T+  LV  +C    ++ A    ++M  +G  P  +  + LV+G 
Sbjct: 1005 KLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGH 1064

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             NA  ++ A  +  +M  +GF + + T++ LI+   K  +     E++  + + GL AD 
Sbjct: 1065 CNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADK 1124

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVED 221
              +        K    D     +  ++E+
Sbjct: 1125 EIFDFFSDTKYKGKRPDTIVDPIDEIIEN 1153


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 1/276 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M+  +   +   L  S    + ++      G   +AV+ F++   F  +    +YN++L 
Sbjct: 121 MFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILK 180

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           AL +  +   A AL  RM+  G  P++ TY +L++  C  G   +A +   EM D+G  P
Sbjct: 181 ALVDSGVILLALALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMP 240

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V+   +L+  L NAG ++ A Q++  M  +G + D  T+N+ +  +CK G V    +  
Sbjct: 241 NVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRL 300

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G    +  Y  LI  + +A   DE F     ++E    P   LY  +I+G    
Sbjct: 301 VMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEA 360

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRG 275
           G+ +DA  F   MK KG  P+   Y T+L  +C  G
Sbjct: 361 GRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHG 396



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 15/289 (5%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP  +  +++I    + G +++A+   +             YN++L  LC+      A
Sbjct: 342 NISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERA 401

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M++   V D  T  I++   C  G + EA +   EM + G +P V   + L+ G
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 LLNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSGEVEFCVE 178
               G LE A+ + +KM             +    V D E+   L+  +C+SG+V    +
Sbjct: 462 FYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYK 521

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  S+   G+  DV TY  LI  + KA  +D A RL   L   G  P    Y  +I G+ 
Sbjct: 522 LLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLL 581

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           R  + +DA   F  +   G  P+  +Y  ++    R  +  +A N  ++
Sbjct: 582 RAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLD 630



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 152/324 (46%), Gaps = 18/324 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++      G +D AV++        C    + YN+ L  LC+V   + A+  +  +  
Sbjct: 246 TVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQD 305

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            GF    + Y+ L++    + +  E   + + M ++  +P V    ++++G   AG +E 
Sbjct: 306 GGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIED 365

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A   ++ M K+GFV D   +N++++ +C  G++E    +   + +  L  D +T  I+I 
Sbjct: 366 ALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMIC 425

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G++DEA ++   + E G  P    Y  +I G +R G+ ++A   F +M++  +P 
Sbjct: 426 GLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEARMLFHKMEMGNNPS 485

Query: 261 --------------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                         +  +  ++  MC + G+ ++A   L  + + G+ P    ++ + +G
Sbjct: 486 LFLRLTLGANQVRDSESLRKLVHDMC-QSGQVLKAYKLLRSIIDSGVVPDVVTYNTLING 544

Query: 307 LKNCGKHDLAEKIELL-EVSLRSV 329
           L  C   +L   + L  E+ L+ +
Sbjct: 545 L--CKARNLDGAVRLFKELQLKGI 566



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 129/282 (45%), Gaps = 37/282 (13%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G       +A LV A  S+G+  +A +    M +    P     + +++ L+++G +  A
Sbjct: 132 GLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLA 191

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + N+M+  G   +  T+N L++ +CK G     ++M+  +   G+  +V  Y +L+ +
Sbjct: 192 LALYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSS 251

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKP---------------------FPSL----------- 229
           +  AG IDEA +LL ++ + G  P                     F  L           
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALG 311

Query: 230 ---YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+F+  +FD+ F ++  M  +   P+  +YT++I  C   GR  +A ++L 
Sbjct: 312 LKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLD 371

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            M + G  P + C++ V   L + G  + A  +  E+L+ +L
Sbjct: 372 VMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNL 413



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 143/330 (43%), Gaps = 18/330 (5%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA------LCEV 65
           NL +   T +++I    K GLVD A+++F++     C   V+ YN+L+        L E 
Sbjct: 412 NLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEEA 471

Query: 66  K-LFH------GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + LFH           +R  +    V D  +   LV+  C SG++ +A + L+ + D G 
Sbjct: 472 RMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGV 531

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   + L+ GL  A  L+ A ++  ++  +G   D  T+ +LI+ + ++      + 
Sbjct: 532 VPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMM 591

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL-LHNLVEDGHKPFPSLYAPIIKGM 237
           ++ ++ + G    +S Y  ++ ++ +   + +A  L L  L +  + P  S         
Sbjct: 592 LFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEVLANAHKE 651

Query: 238 FRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
              G  DD      ++  + G   + P    LI +C +  R  +A      + E G+   
Sbjct: 652 IEDGSLDDGVRELIKIDQEYGSISSNPYTIWLIGLC-QVRRTDDALRIFHTLQEFGIDIT 710

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
             C  L+ + L  C   +L   ++++  +L
Sbjct: 711 PACCALLINYL--CWDRNLNAAVDIMLYAL 738


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  123 bits (309), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G+VD A E+        C+  V+ YN LL AL     +     L+ +M
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TY+IL+   C  GK+ EA   L+ M +KG  P     D L+      G L
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  MI  G + D+  +N+++ T+CK+G+ +  +E++  + ++G   + S+Y  +
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+  +G    A  ++  ++ +G  P    Y  +I  + R G  D+AF    +M+    
Sbjct: 445 FSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +++    +  R  +A N L  M   G  P    + ++ +G+   G    AE 
Sbjct: 505 HPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYR--AEA 562

Query: 319 IEL 321
           +EL
Sbjct: 563 MEL 565



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 131/271 (48%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN+L+   C++     A  ++ RM  K F PD  TY I++ + CS GK+  A +
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L ++      P V    +L++  +  G ++ A +++++M+ +G   D+ T+N++I  +C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G V+   EM  ++   G   DV +Y IL+ A+   G  +E  +L+  +  +   P   
Sbjct: 275 KEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y+ +I  + R G+ ++A      MK KG  P+   Y  LI    R GR   A  +L  M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G  P    ++ V   L   GK D A +I
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEI 425



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 140/305 (45%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G VD A+++ ++  +   +  +  YN+++  +C+  +   A+ ++R +
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y IL+ A  + GK  E ++ + +M  +  +P V    +L+  L   G +
Sbjct: 290 ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKI 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M ++G   D  +++ LI   C+ G ++  +E   ++   G   D+  Y  +
Sbjct: 350 EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTV 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G  D+A  +   L E G  P  S Y  +   ++  G    A     EM   G 
Sbjct: 410 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  +I+   R G   EA   LV+M      P    +++V  G   C  H + + 
Sbjct: 470 DPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF--CKAHRIEDA 527

Query: 319 IELLE 323
           I +LE
Sbjct: 528 INVLE 532



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 38/341 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC------------------- 63
           +I  F K   +D+A  V ++  + +     + YN ++ +LC                   
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223

Query: 64  ------------EVKLFHG----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                       E  +  G    A  L+  M+ +G  PD  TY  ++   C  G +  A 
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E ++ +  KG  P V   ++L++ LLN G  E  ++++ KM  +    ++ T++ LI T+
Sbjct: 284 EMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C+ G++E  + +   + + GL  D  +Y  LI A  + G +D A   L  ++ DG  P  
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++  + + G+ D A   F ++   G  PN   Y  + +     G  + A + ++E
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           M   G+ P    ++ +   L  C +  + E  ELL V +RS
Sbjct: 464 MMSNGIDPDEITYNSMISCL--CREGMVDEAFELL-VDMRS 501



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 45/303 (14%)

Query: 65  VKLFH-----GAYA----LIRRMIRKGF-------------------------------- 83
           +K+FH     G Y     L+  M+RKG+                                
Sbjct: 93  LKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK 152

Query: 84  --VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
              PD   Y  L+N +C   ++ +A   L  M  K F+P     ++++  L + G L+ A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++N+++       + T+  LIE     G V+  +++   +   GL  D+ TY  +I  
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K GM+D AF ++ NL   G +P    Y  +++ +  +G++++     ++M  +   PN
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y++LIT   R G+  EA N L  M E GLTP +  +D +       G+ D+A  IE 
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA--IEF 390

Query: 322 LEV 324
           LE 
Sbjct: 391 LET 393



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 104/235 (44%), Gaps = 10/235 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LMK   L+    +   +I  F + G +D A+E      +  C   ++ YN++L  LC+
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P+  +Y  + +A  SSG    A   + EM   G +P    
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A +++  M    F   + T+N ++   CK+  +E  + +  S+ 
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV 535

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DG---------HKPFPSL 229
             G   + +TY +LI  +  AG   EA  L ++LV  D          H+ FP L
Sbjct: 536 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYSFKRLHRTFPLL 590


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 144/304 (47%), Gaps = 3/304 (0%)

Query: 21  SLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +++I  + K G +D A   +++K     C+  V  +N+L+  LC+  L   A  ++  M 
Sbjct: 348 TILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMS 407

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+  TY  L++ +C   ++ EA   L EMS KGF   + G ++L++ L   G + 
Sbjct: 408 ANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVP 467

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  M+ +M  +G   D+ TFN+LI  +CK    E  + +Y  +   G+ A+  TY  LI
Sbjct: 468 KALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLI 527

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A  + G I EA +L+++++  G       Y  +IK   + G  + A   F EM  K   
Sbjct: 528 HAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLV 587

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+     +LI    R G+   A   L +M   GL P    ++ + +GL  C   ++ E  
Sbjct: 588 PSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGL--CKMGNIREAF 645

Query: 320 ELLE 323
            L  
Sbjct: 646 NLFN 649



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 152/332 (45%), Gaps = 36/332 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K GL+ +AV++ N  +A  C   ++ Y +LL   C+      A  ++  M
Sbjct: 382 TFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEM 441

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG------- 124
             KGF  +   Y +L+ A C +GK+ +A + L EMSDKG       FN  + G       
Sbjct: 442 SAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRK 501

Query: 125 -------RDLLVQGL--------------LNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                  RD+L+ G+              L  G ++ A ++VN M+ +G  LD  T+N L
Sbjct: 502 EDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGL 561

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+  CK G  E  + ++  + +  L     +  +LI  + + G +  A  LL +++  G 
Sbjct: 562 IKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGL 621

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I G+ + G   +AF  F++++ +G  P+   Y  LI    R G F +A  
Sbjct: 622 APDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYL 681

Query: 284 YLVEMTEMGLTPIS-RCFDLVTDGLKNCGKHD 314
            L+   E    P     + LV++ +K  GK +
Sbjct: 682 LLLRGVENAFIPNDVTWYILVSNFIKEIGKEN 713



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 9/307 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA--LCEVKLFHGAYALIR 76
           T  +++    + G VD A  + NK    N     +L N  + +  L E   F     L  
Sbjct: 315 TYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDEANAF-----LYD 369

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           +MI+ G  PD  T+  L++  C  G M  A + + +MS  G  P +     L+ G     
Sbjct: 370 KMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKN 429

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            LE A  ++N+M  +GF L++  +N L+  +CK+G+V   ++M   +   G   D+ T+ 
Sbjct: 430 QLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFN 489

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI  + K    ++A  L  +++ DG       Y  +I    R G   +A    ++M  +
Sbjct: 490 TLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFR 549

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G P +   Y  LI    + G   +A     EM    L P +   +L+ +GL   GK  + 
Sbjct: 550 GCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGK--VC 607

Query: 317 EKIELLE 323
             +ELL 
Sbjct: 608 NALELLR 614



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 129/297 (43%), Gaps = 8/297 (2%)

Query: 23  IIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           I++ +G+  L   A   + +    + C+     YN +L  L        A  +   M+ K
Sbjct: 143 IMKYYGRANLPGQATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSK 202

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G +P   T+ +++ A C   ++  A   L++M+  G  P       L+  L     +  A
Sbjct: 203 GVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEA 262

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++ +M   G + D++TFN +I  +C+   +    ++   +   G   +  TY +L+  
Sbjct: 263 LKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNG 322

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPP 260
           + + G +DEA  LL+ +      P    +  +I G  + G+ D+A  F  +  IK G  P
Sbjct: 323 LCRVGKVDEAQVLLNKV----PTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRP 378

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           +   +  LI    + G    A + + +M+  G TP    +  + DG   C K+ L E
Sbjct: 379 DVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGF--CKKNQLEE 433


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I    + G +D A  +  + +       V  Y +L+  LC V     A  +  +M
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+   + IL++A C  G      E  +EM ++G  P     + +V GL  A  L
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA  +V +M   G   D  T+ +LI+  CK  E++  +E+  ++   G+  D  TY  L
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SKAG   +A R+L  ++E G +P  + Y  +I    R+G          EM+ KG 
Sbjct: 333 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 392

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    Y +++    + G+   A   L  M  +G++P    ++++ DG  +C KH     
Sbjct: 393 KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG--HC-KHGKVTD 449

Query: 319 IELLEVSLRSV 329
           IE L+ +  +V
Sbjct: 450 IEELKSAKGTV 460



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++ +  + G + +A  VF++  +   ++ V+ +N+++  +C      GA  L RRM  
Sbjct: 120 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE 179

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD  TY  L+   C  G++ +A+   ++M  +G  P      +L+      G  E+
Sbjct: 180 AGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAET 239

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
             ++  +M ++G   D  T+N+++  +C++ +++    +   +   GL  D  TY  LI 
Sbjct: 240 MLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 299

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K   +D A  +  N+V +G       Y  +I G+ + G+  DA     EM   G  P
Sbjct: 300 GYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEP 359

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +   YTM+I    R G        L EM   G  P    ++++ +G    G+
Sbjct: 360 DNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L+N L+  L  +     A  +   M  +G      ++  +++  C +G +  A+   + M
Sbjct: 118 LFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM 177

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+ G  P V     L+QGL   G +E A+ +  KM  +G   +   F  LI+  CK G+ 
Sbjct: 178 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 237

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E  +E++  + + G+  D  TY  ++  + +A  +  A  ++  +   G +P    Y  +
Sbjct: 238 ETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTL 297

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  +  + D A      M  +G   +   YT LI+   + GR  +A   L EM E GL
Sbjct: 298 IDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGL 357

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + +V D    C K D+   + LL+
Sbjct: 358 EPDNTTYTMVIDAF--CRKGDVKTGLRLLK 385



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 106/216 (49%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA  F  ++ D G  P  +  ++L++ L+  G L SA+ + ++M  +G    + +FN++I
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +C++G+++    ++  + + G+  DV TY  LI  + + G I++A  +   +   G K
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P   ++  +I    ++G  +       EM+ +G  P+   Y  ++    R      A+  
Sbjct: 219 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 278

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           +VEM   GL P +  +  + DG     + D+A +I+
Sbjct: 279 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 314



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 3/197 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I+ + K   +D A+E+     A       + Y +L+  L +   
Sbjct: 282 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M+  G  PD  TY ++++A+C  G ++     L+EM +KG  P V   ++
Sbjct: 342 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 401

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G +++A  ++N MI  G   D  T+N L++  CK G+V    E+  +    G
Sbjct: 402 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAK---G 458

Query: 188 LCADVSTYKILIPAVSK 204
              D+  Y  ++  + K
Sbjct: 459 TVPDLGVYTSIVGEIVK 475


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 134/292 (45%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           TI  M+    S    T + +I  + K G +  A    ++    N +   +  N++L  LC
Sbjct: 405 TITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLC 464

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             K    AY L+    ++G+  D+ +Y  L+  +   G +  A +   EM +K   P   
Sbjct: 465 REKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL   G  E A   +N++++ G + D  T+N+++   C+ G+VE   + +  +
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +     DV T  IL+  +   GM+++A +L +  V  G       Y  +I  + + G+ 
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DDAF   SEM+ K   P+   Y  +IT     GR  EA  ++ +M E G  P
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 2/285 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E FN          V  +N +++  C    F  A   +  M +    PD  TY  +++A 
Sbjct: 194 EAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDAL 253

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G++ +A++ L +M  +G  P     ++LV G    G+L+ A  ++  M +   + D+
Sbjct: 254 CKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDV 313

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+N LI  +C  G +E   ++   +  L L  DV +Y  LI    +   I EAF+LL  
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           + E G KP    +  ++K   + G+ DDA    ++M+  G  P+   Y  LI    + G 
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             EA   + EM    +   S   + +   L  C +  L E  +LL
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTL--CREKKLEEAYKLL 476



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IELM   NL     T +++I      G ++ A ++ ++         V+ YN+L+    E
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L+  M  KG  P+  T+ I+V  +C  GKM +A   + +M + GF+P    
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G   AG +  A + +++M ++   +D  T N+++ T+C+  ++E   ++  S  
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G   D  +Y  LI    K G +D A +L   + E    P    Y  II G+ + G+ +
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            A    +E+   G  P+   Y  ++    R G   +A  +  +M E    P
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKP 591



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 148/346 (42%), Gaps = 37/346 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I  +       +AVE  N    +NC    + YN++L ALC+      A  L+  
Sbjct: 209 NTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMD 268

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G +P++ TY ILV  +C  G ++EA   ++ M+     P V   ++L+ GL N G 
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLI--------------------------------- 164
           +E A ++ ++M     + D+ ++N+LI                                 
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 165 --ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
             +  CK G+++        + + G   D  TY  LI    KAG + EAFR +  +    
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            K        I++ + R  + ++A+   S  + +G+  +   Y  LI    + G    A 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRAL 508

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD--LAEKIELLEVSL 326
               EM E  + P +  ++ +  GL  CGK +  +++  ELLE  L
Sbjct: 509 KLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGL 554



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 3/296 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG--- 70
           S S   L   I  + + G   +A ++F K      +  +L  N+LL +L      H    
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           +       I+ G VP+  T+ I++  +C   K ++A EFL  M     +P     + ++ 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G L  A+ ++  M  +G + +  T+N L+   CK G ++    +   + +  L  
Sbjct: 252 ALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV TY +LI  +   G I+EAF+L   +      P    Y  +I G     +  +AF   
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  KG  PN   + +++    + G+  +A+N + +M E G +P    ++ + +G
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 3/197 (1%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYS 182
           D  +   + +G    A Q+  KM +     +L T N+L+ ++ +   S  V F  E +  
Sbjct: 139 DTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFND 198

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             KLG+  +V+T+ I+I          +A   L+ + +    P    Y  I+  + ++G+
Sbjct: 199 AIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGR 258

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA     +MK +G  PNR  Y +L+    + G   EAAN +  MT+  L P    +++
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 303 VTDGLKNCGKHDLAEKI 319
           + +GL N G+ + A K+
Sbjct: 319 LINGLCNEGRIEEAFKL 335



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 9/270 (3%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SLL         H  +  I R+      P K      + A+  SG+   A +  ++M   
Sbjct: 109 SLLLGFIATDRRHDLHLSILRLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRL 164

Query: 117 GFNPPVRGRDLLVQGLL---NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              P +   + L+  L+   ++  +  +++  N  IK G V ++ TFN +I   C   + 
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF 224

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  VE    + K     D  TY  ++ A+ K G + +A  LL ++   G  P  + Y  +
Sbjct: 225 KDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNIL 284

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G  + G   +A      M      P+   Y MLI      GR  EA     EM  + L
Sbjct: 285 VYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKL 344

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    ++ + +G     K  ++E  +LLE
Sbjct: 345 LPDVVSYNTLINGCLEWSK--ISEAFKLLE 372


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 145/303 (47%), Gaps = 9/303 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR-K 81
           +IE   + G++D A + F +  + N      L+N+L+ A+C+ K       L +RM   K
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 82  GFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            F   P+  TY I+V+  C + ++ EAQE + EM++ G +P V     LV GL   G L+
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +M K+G   D  T  S++  + K+G+V++ +    ++   G   D+ TY  L+
Sbjct: 392 RACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLL 451

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + KAG IDEA   L  +V     P    Y  II  + R GQ   A   F EM  +G  
Sbjct: 452 DGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVL 511

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL-TPISRCFDLVTDGLKNCGK-HDLAE 317
           P+  +Y  L+    R G      +  +E+ +  L  P      +V DGL   GK  D  E
Sbjct: 512 PDTVLYHSLLDGLARNG----LEDLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACE 567

Query: 318 KIE 320
            +E
Sbjct: 568 VVE 570



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 135/309 (43%), Gaps = 24/309 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T S++I+   K   VD+A+E+F    +   C   V+ +NSLL  LC  +    A+ L   
Sbjct: 110 TYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEY 169

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M + G  P+  +Y+ L++  C +G++ EA    +EM +K   P +      V GL  A  
Sbjct: 170 MAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANR 229

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A     KM+ +G   D   F+++I  +CK G  E                       
Sbjct: 230 VAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE------------------EAQNQ 271

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + ++GM+DEA +    ++   H P   L+  +I  + +  +  D    F  MK   
Sbjct: 272 MIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMK 331

Query: 258 H---PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               PPN   Y +++    +  +  EA   + EM   GL+P    +  + DGL   GK D
Sbjct: 332 EFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLD 391

Query: 315 LAEKIELLE 323
            A   +LLE
Sbjct: 392 RA--CDLLE 398



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN  L AL +      AY   ++M R+G+ PD  TY+I++   C +G++ +A+E
Sbjct: 35  QHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKE 94

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGFVLDLETFNSLIETI 167
            L ++ + G    V    +++ G   A  ++ A ++   M    G V D+ TFNSL++ +
Sbjct: 95  LLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGL 154

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C    +     ++  + K G   +V +Y  L+  + KAG +DEA RL   +VE    P  
Sbjct: 155 CSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDL 214

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y   + G+ +  +  +A     +M  KG   +   ++ +I +  + G   EA N ++E
Sbjct: 215 VAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIE 274



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 143/298 (47%), Gaps = 4/298 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +++ ++ MK +    + +T +++++   K   +D A E+ N+   +     V+ Y++L+ 
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC++     A  L+  M ++G  PD  T A ++NA   +GK+  A   L+ M  +G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + L+ GL  AG ++ A   + KM+      D+ ++  +I  +C+SG+      ++
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  D   Y  L+  +++ G+ D A  LL   +    KP   ++  ++ G+ + 
Sbjct: 503 QEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSL---CKPDFVMHKMVLDGLCKA 559

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           G+ +DA      M   G P +   Y  +++   + G+ V+ A  LV+      T + R
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGK-VDKARQLVDDASETHTSVER 616



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 1/225 (0%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +KG+     TY   ++A   +   + A E  Q+M  +G+ P      ++++GL  AG L+
Sbjct: 31  QKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELD 90

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKIL 198
            AK+++ ++ + G  L++ T++ +I+  CK+  V+  +E++ ++   G C  DV T+  L
Sbjct: 91  KAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSL 150

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +     + EAF L   + + G +P    Y+ ++ G+ + G+ D+A   + EM  K  
Sbjct: 151 LKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSC 210

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P+   YT  +T   +  R  EA +   +M   G    +  F  V
Sbjct: 211 VPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTV 255


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 156/333 (46%), Gaps = 13/333 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y +S    T +++I  F K+ +VD     F +  +FNC   V+ YN+L+  LC  
Sbjct: 208 EMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRA 267

Query: 66  KLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A  L+  M +K  G  P+  TY  L+  +C   ++ EA   L+EM+ +G  P + 
Sbjct: 268 GKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMI 327

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + LV+GL  A  L+  K ++ +M    GF  D  TFN++I   C +G ++  ++++ S
Sbjct: 328 TYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFES 387

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-------GHKPFPSLYAPIIK 235
           + K  + AD ++Y  LI ++ + G  D A +L   L E        G KP  + Y PI +
Sbjct: 388 MKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFE 447

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A     ++  +G    +   T+++  C  G  +      L+ M      P
Sbjct: 448 SLCEHGKTKKAERVIRQLMKRGTQDPQSYTTVIMGHCKEGA-YESGYELLMWMLRRDFLP 506

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               +D + DG     K  LA+  E LE  L+S
Sbjct: 507 DIEIYDYLIDGFLQKDKPLLAK--ETLEKMLKS 537



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 8/250 (3%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFL---QEMSDKGFNPPVRGRDLLVQGLLNAG 136
           +KGF     +Y I++        +  A+ FL   ++ S        R  + L++    AG
Sbjct: 103 QKGFSHTPESYFIMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDRFFNSLIRSYAEAG 162

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC-KLGLCADVSTY 195
             + + ++   M        + TFNSL+  + K G      E+Y  +    G+  D  TY
Sbjct: 163 LFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEMLGTYGVSPDTCTY 222

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-- 253
            +LI    K  M+DE FR    +           Y  ++ G+ R G+   A    + M  
Sbjct: 223 NVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKVRIARNLVNGMGK 282

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           K +G  PN   YT LI          EA   L EMT  GL P    ++ +  GL  C  H
Sbjct: 283 KCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGL--CEAH 340

Query: 314 DLAEKIELLE 323
            L +  ++LE
Sbjct: 341 KLDKMKDVLE 350



 Score = 60.8 bits (146), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/330 (20%), Positives = 139/330 (42%), Gaps = 29/330 (8%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-------TAFNCQQCVLLY 55
           K  E MK + +     + S +I    + G  D A ++F++        + F  +     Y
Sbjct: 383 KVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKEILLSKFGSKPLAASY 442

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +  +LCE      A  +IR+++++G   D ++Y  ++   C  G      E L  M  
Sbjct: 443 NPIFESLCEHGKTKKAERVIRQLMKRG-TQDPQSYTTVIMGHCKEGAYESGYELLMWMLR 501

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           + F P +   D L+ G L       AK+ + KM+K  +     T++S++  + + G    
Sbjct: 502 RDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKG---- 557

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI------DEAFRLLHNLVEDGHKPFPSL 229
           C   + S C + +  + +  + +  +     ++      + AF +++ L ++G   +   
Sbjct: 558 CA--HESSCVIVMMLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNG---YYVK 612

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV---YTMLITMCGRGGRFVEAANYLV 286
              + + + +RG+  +A C      ++ H  N  +      ++ +C +  +  EA +   
Sbjct: 613 IEEVAQFLLKRGKLSEA-CKLLLFSLENH-QNVDIDLCNATILNLC-KINKVSEAFSLCY 669

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           E+ E GL     C D +   L+  GK + A
Sbjct: 670 ELVENGLHQELTCLDDLIAALEEGGKREEA 699


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 147/305 (48%), Gaps = 6/305 (1%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           KP N+S       ++I    K G +D ++++ ++         +  Y+SL+ AL + +  
Sbjct: 77  KPDNVS-----YHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A +L   MIR G  PD+  +  L+   C +GK+++A E  ++M   G  P V   ++L
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL ++G LE A  +  +M       D+ T+N+L++ +CK+  VE   +++ ++   G 
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGY 251

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V T+  LI  + + G +++A  +  +++E G KP    Y  +I G+ R  +   A  
Sbjct: 252 VPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARE 311

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGL 307
            F +M     PP+   Y  LI    + G   EA     EM+   GL P    F+ + DG 
Sbjct: 312 LFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGF 371

Query: 308 KNCGK 312
              GK
Sbjct: 372 CKLGK 376



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N++ +  T S II+   K    + + +V  +  A  C   V  +N ++        
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  + + M+  G+ PD  +Y IL++     GK+ E+ + L EM  +G  P ++    
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------- 180
           LV+ L  A  ++ A  + ++MI+ G   D   F  LI  +C++G+V+   E +       
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHG 180

Query: 181 -------YSVCKLGLCA---------------------DVSTYKILIPAVSKAGMIDEAF 212
                  Y+V   GLC+                     DV TY  L+ AV KA  ++E  
Sbjct: 181 CQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGC 240

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L   +   G+ P    ++ +I G+ R G+ + A   F  M   G  PN+  YT LI+  
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            R  + ++A     +MT+  + P +  ++ +  G    G  D AEK+
Sbjct: 301 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 347



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 129/281 (45%), Gaps = 2/281 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK ++ S    T + +++   K   V+   ++F    A      V+ +++L+  LC    
Sbjct: 211 MKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE 270

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M+  G  P+K TY  L++  C + K+ +A+E  ++M+     P     + 
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           L+ G    G ++ A+++  +M    G    + TFN+LI+  CK G++    E+   +   
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL AD  TY+ILI  +S+A  +DEA  +   + E      P      + G+ + G  D A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           +  F   +  G  PN   + +L     + GR VE A  L+E
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGR-VEDAQKLME 490



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 109/245 (44%), Gaps = 1/245 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M+      +  T S +I    + G ++ A+EVF       C+     Y +L+  L
Sbjct: 241 KLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGL 300

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS-DKGFNPP 121
           C  +    A  L  +M +    PD   Y  L+  +C  G M EA++  +EMS   G  P 
Sbjct: 301 CRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPT 360

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L+ G    G L  A ++V +M  +G   D  T+  LI  + ++ +++  +E+Y 
Sbjct: 361 IVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYK 420

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +     D  +    +  + K G ID+A+ +     + G  P P  +  + + + + G
Sbjct: 421 QMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLG 480

Query: 242 QFDDA 246
           + +DA
Sbjct: 481 RVEDA 485


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P+ +  + +I  +   G +D A+   ++         V  YN L+ AL        AY
Sbjct: 213 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 272

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  PD  TY IL+N  C  G +++A E  + MS +G    V     L+  L
Sbjct: 273 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 332

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++   ++ ++ +++G   DL  +N+LI +   SG ++   E+   + K  +  D 
Sbjct: 333 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 392

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  +   G +DEA +L+  + E G +P    Y  +I G   +G   DA    +E
Sbjct: 393 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 452

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG  P    Y  LI    + G+  +A N + EM E G+TP    +  + +GL
Sbjct: 453 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L+    T +++I    K G V  A+E+F   +    +  V+ Y +L++A
Sbjct: 272 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 331

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +         L    +R+G  PD   Y  L+N+  +SG +  A E + EM  K   P 
Sbjct: 332 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++GL   G ++ A++++++M ++G   DL T+N+LI      G+V+  + +  
Sbjct: 392 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 451

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K G  D+A  ++  +VE+G  P  S Y  +I+G+
Sbjct: 452 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 507



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 143/364 (39%), Gaps = 86/364 (23%)

Query: 18  QTLSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++LSL I     H L+       A  +F          C   +N +L  LC       A 
Sbjct: 75  KSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL 134

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--------- 123
            L+R+M R    P+  TY  ++  +CS G+++ A + ++EM ++G   P +         
Sbjct: 135 ELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 190

Query: 124 ----GR------------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               GR                        + L+ G  + G L++A    ++M+++G  +
Sbjct: 191 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 250

Query: 156 DLETFNSLIETI-----------------------------------CKSGEVEFCVEMY 180
            + T+N L+  +                                   CK G V+  +E++
Sbjct: 251 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 310

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++ + G+ A V TY  LI A+SK G + E  +L    V  G +P   LY  +I      
Sbjct: 311 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 370

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D AF    EM+ K   P+   Y  L+      GR  EA   + EMTE G+ P     
Sbjct: 371 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP----- 425

Query: 301 DLVT 304
           DLVT
Sbjct: 426 DLVT 429



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 97/185 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V    ++F++      +  ++LYN+L+ +         A+ ++  M
Sbjct: 324 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  TY  L+   C  G++ EA++ + EM+++G  P +   + L+ G    G +
Sbjct: 384 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 443

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ N+M+ +GF   L T+N+LI+ +CK+G+ +    M   + + G+  D STY  L
Sbjct: 444 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 503

Query: 199 IPAVS 203
           I  ++
Sbjct: 504 IEGLT 508



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G +D A E+  +          + YN+L+  LC +     A  LI  M  +G
Sbjct: 363 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 422

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +   G +++A     EM +KGFNP +   + L+QGL   G  + A+
Sbjct: 423 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 482

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            MV +M++ G   D  T+ SLIE +    E
Sbjct: 483 NMVKEMVENGITPDDSTYISLIEGLTTEDE 512


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 140/291 (48%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A+++  K      +  V +Y++++ ALC+ +L   AY L   M  KG   D  
Sbjct: 176 KIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVV 235

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+ L+  +C  GK++EA   L EM  K  NP V   ++LV  L   G ++ AK ++  M
Sbjct: 236 TYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVM 295

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +K     D+ T+++L++      EV+    ++ ++  +G+  DV TY ILI    K  M+
Sbjct: 296 LKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMV 355

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA  L   + +    P    Y+ +I G+ + G+    +    EM+ +G P +   Y+ L
Sbjct: 356 DEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSL 415

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    + G    A     +M +  + P    F ++ DGL   G+   A+++
Sbjct: 416 IDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEV 466



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 145/334 (43%), Gaps = 35/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K+ LV  A  +F++ T       V+ Y++L++  C       A  L+  M+ 
Sbjct: 203 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262

Query: 81  KGFVPDKRTYAILVNAWCSSGKMRE----------------------------------- 105
           K   P+  TY ILV+A C  GK++E                                   
Sbjct: 263 KTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKK 322

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           AQ     MS  G  P V    +L+ G      ++ A  +  +M ++  V  + T++SLI+
Sbjct: 323 AQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLID 382

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CKSG + +  ++   +   G  ADV TY  LI  + K G +D A  L + + +   +P
Sbjct: 383 GLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRP 442

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               +  ++ G+ + G+  DA   F ++  KG+  N   Y ++I    + G   EA   L
Sbjct: 443 NIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTML 502

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +M + G  P +  F+ +   L    ++D AEK+
Sbjct: 503 SKMEDNGCIPNAFTFETIIIALFKKDENDKAEKL 536



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 129/274 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+         ++ +N +L +  ++K +  A +L  R+  KG  PD  T  I
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G++      L ++  +G+ P     + L++GL   G ++ A    +K++ QG
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F L+  ++ +LI  +CK G+    +++   +       +V  Y  +I A+ K  ++ EA+
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAY 219

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +   G       Y+ +I G    G+  +A    +EM +K   PN   Y +L+   
Sbjct: 220 GLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDAL 279

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + G+  EA + L  M +  + P    +  + DG
Sbjct: 280 CKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDG 313



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 108/225 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A  VFN  +       V  Y  L+   C+ K+   A  L + M +K  VP   TY+ 
Sbjct: 320 VKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++    + + EM D+G    V     L+ GL   G+L+ A  + NKM  Q 
Sbjct: 380 LIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE 439

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ TF  L++ +CK G ++   E++  +   G   +V TY ++I    K G+++EA 
Sbjct: 440 IRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEAL 499

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +L  + ++G  P    +  II  +F++ + D A     +M  +G
Sbjct: 500 TMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARG 544



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 134/285 (47%), Gaps = 8/285 (2%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL---FALCEVKLF 68
           +++P   T +++++   K G V  A  V         +  V+ Y++L+   F + EVK  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVK-- 321

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  +   M   G  PD  TY IL+N +C +  + EA    +EM  K   P +     L
Sbjct: 322 -KAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSL 380

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL  +G +     ++++M  +G   D+ T++SLI+ +CK+G ++  + ++  +    +
Sbjct: 381 IDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEI 440

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             ++ T+ IL+  + K G + +A  +  +L+  G+      Y  +I G  ++G  ++A  
Sbjct: 441 RPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALT 500

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             S+M+  G  PN   +  +I    +     +A   L +M   GL
Sbjct: 501 MLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 134/325 (41%), Gaps = 35/325 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I++ F K      AV + ++      Q  ++  N L+   C +      ++++ +++++G
Sbjct: 65  ILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRG 124

Query: 83  FVPDKRT-----------------------------------YAILVNAWCSSGKMREAQ 107
           + PD  T                                   YA L+N  C  G  R A 
Sbjct: 125 YPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAI 184

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           + L+++  +   P V     ++  L     +  A  + ++M  +G   D+ T+++LI   
Sbjct: 185 KLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGF 244

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C  G+++  + +   +    +  +V TY IL+ A+ K G + EA  +L  +++   KP  
Sbjct: 245 CIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDV 304

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ ++ G F   +   A   F+ M + G  P+   YT+LI    +     EA N   E
Sbjct: 305 ITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKE 364

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGK 312
           M +  + P    +  + DGL   G+
Sbjct: 365 MHQKNMVPGIVTYSSLIDGLCKSGR 389



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+         T S +I+   K+G +D A+ +FNK      +  +  +  LL 
Sbjct: 393 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLD 452

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A  + + ++ KG+  +  TY +++N  C  G + EA   L +M D G  P
Sbjct: 453 GLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 512

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                + ++  L      + A++++ +MI +G +
Sbjct: 513 NAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 546


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 155/312 (49%), Gaps = 1/312 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M+      +  T ++II+   + G VD A E+ N   +  C+   + YN++L   C 
Sbjct: 221 IDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCS 280

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           ++ +  A  ++  M+R+   P++ T  +++N  C  G +++   +L++MS  G    V  
Sbjct: 281 IERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVT 340

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ G+   G ++SA ++++ M   G   D+ T+N++++ +C +   E   E+   + 
Sbjct: 341 YNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMS 400

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +     D ST+  +I    + G+I +AF +   + E G  P  + Y+ II G+ + G+ +
Sbjct: 401 QNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKME 460

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A    +EM  KG   ++ +Y +L     +  +  E    + ++ + G++P +  ++ V 
Sbjct: 461 QALELLNEMANKGFNTDK-MYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVL 519

Query: 305 DGLKNCGKHDLA 316
            GL   GK D A
Sbjct: 520 LGLCRNGKTDYA 531



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 142/300 (47%), Gaps = 2/300 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G V +A+ V +      C   V+ YN LL A C+ + +  A  LI  M  +G
Sbjct: 169 LIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEG 228

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY ++++A C  G + +A+E L  +  +G  P     + +++G  +      A 
Sbjct: 229 CEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDAD 288

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M+++    +  T N +I T+C+ G ++        + K G  A+V TY  +I  +
Sbjct: 289 EILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G +D A  LL N+   G KP    Y  ++KG+    +++DA     +M      P+ 
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             +  +I+   + G  ++A     +M E G  P S  +  +  GL   GK  + + +ELL
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGK--MEQALELL 466



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 123/265 (46%), Gaps = 36/265 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +  + +  T + +I    + G VD+A+E+ +   +F C+  ++ YN++L  LC 
Sbjct: 326 LEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCS 385

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A  L+ +M +   +PD  T+  +++ WC  G + +A E  ++M +KG NP    
Sbjct: 386 ADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNP---- 441

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
                                          +  T++++I  + K+G++E  +E+   + 
Sbjct: 442 -------------------------------NSTTYSTIIGGLTKAGKMEQALELLNEMA 470

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   D   Y++L  +++K   I+E  +++H L + G  P   LY  ++ G+ R G+ D
Sbjct: 471 NKGFNTD-KMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTD 529

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLI 269
            A    ++M   G  P+   Y +LI
Sbjct: 530 YAIDVLADMVSCGCMPDESTYIILI 554



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 12/201 (5%)

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           G D  +  L++ G L++A ++V    +     D+   N L+  +C+ G      +    V
Sbjct: 66  GADRRLSALIHRGDLDAALRLVGSSPRPP---DVPLANRLVRDLCRRGRP---ADAARVV 119

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRG 241
              G  A  +TY  L+    +AG++++A R++  +    H    S YA  P+I  +  RG
Sbjct: 120 EACGPEATAATYGALVDGYCRAGLLEDARRVVGGM--PAHVQASSAYAHNPLIHALCERG 177

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  DA      M  +G  P+   Y +L+    +G  + +A   +  M   G  P +  ++
Sbjct: 178 RVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYN 237

Query: 302 LVTDGLKNCGKHDLAEKIELL 322
           ++ D +  C + D+ +  ELL
Sbjct: 238 VIIDAM--CREGDVDQARELL 256



 Score = 45.4 bits (106), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 44/95 (46%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           ++ E   K   ++  V+V +K          +LYN++L  LC       A  ++  M+  
Sbjct: 482 VLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSC 541

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           G +PD+ TY IL+      G  +EA+E L  +  +
Sbjct: 542 GCMPDESTYIILIEGLFYEGYSKEARELLSRLCSR 576



 Score = 42.4 bits (98), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT--AFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T S II    K G ++ A+E+ N+     FN  +   +Y  L  +L +         ++ 
Sbjct: 445 TYSTIIGGLTKAGKMEQALELLNEMANKGFNTDK---MYRVLTESLNKEDKIEEVVQVVH 501

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           ++   G  P    Y  ++   C +GK   A + L +M   G  P      +L++GL   G
Sbjct: 502 KLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEG 561

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           Y + A+++++++  +  +      NSLI+ 
Sbjct: 562 YSKEARELLSRLCSRDVL-----SNSLIKN 586


>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 530

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 160/358 (44%), Gaps = 39/358 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  I+LMK   + ++  T S+++  + + GL   AV  FN+   + C+   + ++ ++ +
Sbjct: 163 WHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISS 222

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+ +    A  L    ++  F PD   Y  LV+ WC +G + +A+E   +M + G  P 
Sbjct: 223 LCKKRRASEA-ELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPN 281

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +++  L   G +  A  + ++MI  G   +  TFNSL+    K+G  E  +++Y 
Sbjct: 282 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYN 341

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +LG  AD  +Y  LI +  K   +DEA ++L  +V+ G  P  S +  I   +    
Sbjct: 342 QMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELH 401

Query: 242 QFDDAFCFFSEMK-IKGHP----------------------------------PNRPVYT 266
             + A   +++MK +K  P                                  PN   Y 
Sbjct: 402 DVNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYR 461

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +LI M    G +  A N + EM E   L P    ++ V + L+N G+  L +  EL+E
Sbjct: 462 ILILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQ--LKKHEELVE 517



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 109/249 (43%), Gaps = 1/249 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++    +++ F  A+ LI  M  +G      T+++LV  +  +G   EA      M 
Sbjct: 146 YNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAEAVHAFNRME 205

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G  P      +++  L        A+   + + K  F  D+  + SL+   C++G++ 
Sbjct: 206 DYGCKPDKVSFSIVISSLCKKRRASEAELFFDSL-KHKFEPDVIVYTSLVHGWCRAGDIA 264

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  + + G+  +V TY I+I ++ + G I  A  +   +++ G  P    +  ++
Sbjct: 265 KAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLM 324

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +   + G+ +     +++MK  G   +   Y  LI    +     EA   L  M + G+ 
Sbjct: 325 RVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVA 384

Query: 295 PISRCFDLV 303
           P +  F+ +
Sbjct: 385 PNASTFNSI 393



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +GF    E +N +I+   K    +    +   +   G+   VST+ +L+    +AG+  E
Sbjct: 137 EGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSVLVRRYVRAGLAAE 196

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A    + + + G KP    ++ +I  + ++ +  +A  FF  +K K   P+  VYT L+ 
Sbjct: 197 AVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFE-PDVIVYTSLVH 255

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK----HDL 315
              R G   +A     +M E G+ P    + +V D L  CG+    HD+
Sbjct: 256 GWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRAHDV 304



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  ++ K     C    L YN L+    + K       L + M      P+  TY I
Sbjct: 403 VNGAHRMYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRI 462

Query: 93  LVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           L+  +C  G    A   ++EM  +K   P +   + +++ L NAG L+  +++V KM+ +
Sbjct: 463 LILMFCEKGHWNNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVAR 522

Query: 152 GFV 154
           GFV
Sbjct: 523 GFV 525



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 98/237 (41%), Gaps = 36/237 (15%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G  +  ++V+N+     C    + YN L+ + C+ +    A  ++  M++KG  P+  
Sbjct: 329 KAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNAS 388

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  +                + E+ D             V G         A +M  KM
Sbjct: 389 TFNSIFGC-------------IAELHD-------------VNG---------AHRMYAKM 413

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            +   + +  T+N L+     S  ++  +++   + +  +  +V+TY+ILI    + G  
Sbjct: 414 KELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHW 473

Query: 209 DEAFRLLHNLVEDG-HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           + A+ L+  +VE+   KP  S+Y  +++ +   GQ         +M  +G    RP+
Sbjct: 474 NNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARGFVSPRPL 530


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 140/288 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++M    L+    T + +I+ + K   V  A  + ++      +      N+LL+ LC+
Sbjct: 409 LKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 468

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K +  A  L+R   ++GFVPD+ +Y  ++ A+    K   A     EMS +   P +  
Sbjct: 469 EKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYT 528

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L++GL   G L  A   +N+++K+G V D  T+N +I   CK G++E   + +  + 
Sbjct: 529 YNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKML 588

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +     DV T   L+  +   G +++A +L  +  E G K     Y  +I+ + + G  D
Sbjct: 589 ENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVD 648

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            A  FF++M+ +G  P+   Y ++++     GR  EA N L ++ E G
Sbjct: 649 TALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 3/287 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  + K    + A+ ++++ +       +  YN+L+  LC +     A   +  +++KG
Sbjct: 497 VMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKG 556

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VPD  TY I+++A+C  G + +A +F  +M +  F P V   + L+ GL   G LE A 
Sbjct: 557 LVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAI 616

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++     ++G  +D+ T+N+LI+ +CK G+V+  +  +  +   GL  D  TY +++ A+
Sbjct: 617 KLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSAL 676

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP-- 260
           S+AG  +EA  +LH L E G K       P+IK      +        S+ +  G+    
Sbjct: 677 SEAGRSEEAQNMLHKLDESG-KLSERFSYPLIKSSAEEVKTGKDPEVKSDCESGGNAKGG 735

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           ++  Y   +     GG+  EA   L EM + G++  S  +  + +GL
Sbjct: 736 DQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGL 782



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 147/320 (45%), Gaps = 10/320 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   +  S  T +++++   + G ++ A+      T       V+ YN+L+ A C+
Sbjct: 374 LEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCK 433

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A+ L+  M+R G   D  T   L+   C   +  EA+E L+    +GF P    
Sbjct: 434 ARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVP---- 489

Query: 125 RDLLVQGLLNAGYL-----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
            D +  G + A Y      E A  + ++M K+     + T+N+LI+ +C  G++   ++ 
Sbjct: 490 -DEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDK 548

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              + K GL  D +TY I+I A  K G +++AF+  + ++E+  KP       ++ G+  
Sbjct: 549 LNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCL 608

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ + A   F     KG   +   Y  LI    + G    A ++  +M   GL P +  
Sbjct: 609 HGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFT 668

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           +++V   L   G+ + A+ +
Sbjct: 669 YNVVLSALSEAGRSEEAQNM 688



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 138/314 (43%), Gaps = 3/314 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T + ++  + + G +  A  V    TAF  +  +  YN L   LC+   
Sbjct: 271 MKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 330

Query: 68  FHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
              A+ L   M     V PD  TY  LV+A     +  +A   L+EM DKG    +   +
Sbjct: 331 VDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHN 390

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           ++V+GL   G LE A   +  M ++G   D+ T+N+LI+  CK+  V     +   + + 
Sbjct: 391 IVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRS 450

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  D  T   L+  + K    +EA  LL +  + G  P    Y  ++   F+  + + A
Sbjct: 451 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPA 510

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              + EM  +   P+   Y  LI      G+  EA + L E+ + GL P    ++++   
Sbjct: 511 LYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHA 570

Query: 307 LKNCGKHDLAEKIE 320
              C + DL +  +
Sbjct: 571 Y--CKEGDLEKAFQ 582



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 111/259 (42%), Gaps = 1/259 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           +++VF    A         +N L+   C       A + +  M   G  PD  TY  L+ 
Sbjct: 194 SLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLK 253

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C  G + EA+  L  M  +G  P     + LV      G+++ A  +V  M   GF  
Sbjct: 254 AHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEP 313

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRL 214
           DL T+N L   +C++G+V+   ++   +  L + + DV TY  L+ A  K     +A  L
Sbjct: 314 DLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNL 373

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  + + G K     +  ++KG+ R GQ ++A      M  +G  P+   Y  LI    +
Sbjct: 374 LEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCK 433

Query: 275 GGRFVEAANYLVEMTEMGL 293
                +A   + EM   GL
Sbjct: 434 ARNVAKAFVLMDEMVRSGL 452



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 117/256 (45%), Gaps = 3/256 (1%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           + R +I     P+  T+ +LV+  CS G + +A   L  M   G +P V   + L++   
Sbjct: 197 VFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHC 256

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G L  A+ ++ +M K+G      T+N+L+    + G ++    +  ++   G   D+ 
Sbjct: 257 RKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLW 316

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           TY +L   + +AG +DEAF+L   +       P    Y  ++   F+  +  DA     E
Sbjct: 317 TYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEE 376

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG   +   + +++    R G+  EA   L  MTE GL P    ++ + D    C  
Sbjct: 377 MRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAY--CKA 434

Query: 313 HDLAEKIELLEVSLRS 328
            ++A+   L++  +RS
Sbjct: 435 RNVAKAFVLMDEMVRS 450



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 3/183 (1%)

Query: 141 AKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV--EFCVEMYYSVCKLGLCADVSTYKI 197
           A Q+++   ++G V   L+  N+++  + +S     +  ++++ S+  L L  +  T+ +
Sbjct: 156 AAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNL 215

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+      G + +A   L  +   G  P    Y  ++K   R+G   +A    + MK +G
Sbjct: 216 LVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEG 275

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P R  Y  L++   R G   +A N +  MT  G  P    ++++  GL   GK D A 
Sbjct: 276 IAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAF 335

Query: 318 KIE 320
           K++
Sbjct: 336 KLK 338


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 149/329 (45%), Gaps = 7/329 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M+  N + +  T S +I+   K G V +A EVF +      +  V+ YNSL+   
Sbjct: 238 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M   G +PD  TY  L++  C +G+  EA     +M  K  NP V
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 357

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G      ++ A+ + + M+KQ  + D+ TF++L+E  C +G V+    +   
Sbjct: 358 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 417

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       DV TY  L+    K G + EA R+L  + + G +P    Y  +I    R G+
Sbjct: 418 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCF- 300
              A+    EM   G  PN   Y  LI   CG G   +E A  ++E  E      +  F 
Sbjct: 478 PTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGD--LEEARKMLERLERDENCKADMFA 535

Query: 301 -DLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             ++ DGL   G+  ++  +ELLE   +S
Sbjct: 536 YRVMMDGLCRTGR--MSAALELLEAIKQS 562



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 37/338 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    K G +D A ++F K    +C+  V+ + +L+  LC+      A  ++  M  
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P+  TY+ L++  C +G++R+AQE  + M  +G  P V   + L+ G      ++S
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSG------------EVEFCVE--MYYSVCKL 186
           A  ++ +M   G + D+ T+N+LI+ +CK+G            + +FC    + YS    
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 365

Query: 187 GLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           G C                      DV T+  L+     AG++D+A RLL  +V     P
Sbjct: 366 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 425

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  ++ G  + G+  +A      M  +G  PN   YT LI    R G+   A   L
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM   G+ P    +  +  G   CG  DL E  ++LE
Sbjct: 486 EEMVGNGVQPNVITYRSLIGGF--CGTGDLEEARKMLE 521



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 134/272 (49%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C++ V+ +  ++  LC+      A     +M +KG VP++ TY +L+N +C   K+  A 
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 62

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L+EM + G  P V     ++ G      +++A ++  +M++ G + +L T+N+L+  +
Sbjct: 63  LLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL 122

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C++G ++   E+   + + GL  D  +Y  L+  + K G ID A ++  +       P  
Sbjct: 123 CRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDV 182

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I G+ + G+ D+A   F +M+     P+   +T L+    +G R  EA   L  
Sbjct: 183 VAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLET 242

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M +   TP    +  + DGL   G+   A+++
Sbjct: 243 MEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 274



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 125/281 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+ +  T S +I  F +   VD A ++F +     C   ++ YN+LL  LC   L
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L+  M  +G  PDK +Y  L+   C +GK+  A +  ++ S+    P V     
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G L+ A ++  KM +     D+ TF +L++ +CK   ++   ++  ++    
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V TY  LI  + K G + +A  +   ++  G +P    Y  +I G       D A 
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
               EM   G  P+   Y  LI    + GR  EA     +M
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDM 348



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 142/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G    A  +F    A  C   V+ Y+ L+   C+++    A  L   M
Sbjct: 324 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++  +PD  T++ LV  +C++G + +A+  L+EM     +P V     LV G    G +
Sbjct: 384 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 443

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++++ +M K+G   ++ T+ +LI+  C++G+     ++   +   G+  +V TY+ L
Sbjct: 444 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSL 503

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I      G ++EA ++L  L  D + K     Y  ++ G+ R G+   A      +K  G
Sbjct: 504 IGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 563

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PP   +Y  LI    +G    +A   L EMT      P +  ++ V   L   G+H+ A
Sbjct: 564 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEA 623

Query: 317 EKI 319
             +
Sbjct: 624 NAL 626



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 141/318 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+   L     +   ++    K G +D A++VF   +  +C   V+ Y++L+  
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAG 191

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L  +M      PD  T+  L++  C   +++EAQ+ L+ M D+   P 
Sbjct: 192 LCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ GL   G +  A+++  +MI +G   ++ T+NSLI   C +  V+  + +  
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 311

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   D+ TY  LI  + K G   EA RL  ++      P    Y+ +I G  +  
Sbjct: 312 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 371

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D A   F +M  +   P+   ++ L+      G   +A   L EM     +P    + 
Sbjct: 372 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 431

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + DG    G+   A ++
Sbjct: 432 SLVDGFCKVGRMVEARRV 449



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           NC+  +  Y  ++  LC       A  L+  + + G  P    Y  L+   C   ++ +A
Sbjct: 528 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKA 587

Query: 107 QEFLQEMS-DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            E L+EM+  +   P     + ++Q L   G  E A  + ++++
Sbjct: 588 MEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 631


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 149/329 (45%), Gaps = 7/329 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M+  N + +  T S +I+   K G V +A EVF +      +  V+ YNSL+   
Sbjct: 357 QVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M   G +PD  TY  L++  C +G+  EA     +M  K  NP V
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 476

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G      ++ A+ + + M+KQ  + D+ TF++L+E  C +G V+    +   
Sbjct: 477 ITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 536

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       DV TY  L+    K G + EA R+L  + + G +P    Y  +I    R G+
Sbjct: 537 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCF- 300
              A+    EM   G  PN   Y  LI   CG G   +E A  ++E  E      +  F 
Sbjct: 597 PTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGD--LEEARKILERLERDENCKADMFA 654

Query: 301 -DLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             ++ DGL   G+  ++  +ELLE   +S
Sbjct: 655 YRVMMDGLCRTGR--MSAALELLEAIKQS 681



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 37/338 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    K G +D A ++F K    +C+  V+ + +L+  LC+      A  ++  M  
Sbjct: 305 STLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 364

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P+  TY+ L++  C +G++R+AQE  + M  +G  P V   + L+ G      ++S
Sbjct: 365 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 424

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSG------------EVEFCVE--MYYSVCKL 186
           A  ++ +M   G + D+ T+N+LI+ +CK+G            + +FC    + YS    
Sbjct: 425 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 484

Query: 187 GLCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           G C                      DV T+  L+     AG++D+A RLL  +V     P
Sbjct: 485 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 544

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  ++ G  + G+  +A      M  +G  PN   YT LI    R G+   A   L
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM   G+ P    +  +  G   CG  DL E  ++LE
Sbjct: 605 EEMVGNGVQPNVITYRSLIGGF--CGTGDLEEARKILE 640



 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 138/285 (48%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           N  +  +   +  C++ V+ +  ++  LC+      A     +M +KG VP++ TY +L+
Sbjct: 109 NTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLI 168

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           N +C   K+  A   L+EM + G  P V     ++ G      +++A ++  +M++ G +
Sbjct: 169 NGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCM 228

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +L T+N+L+  +C++G ++   E+   + + GL  D  +Y  L+  + K G ID A ++
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
             +       P    Y+ +I G+ + G+ D+A   F +M+     P+   +T L+    +
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G R  EA   L  M +   TP    +  + DGL   G+   A+++
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 393



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 135/312 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+ +  T S +I  F +   VD A ++F +     C   ++ YN+LL  LC   L
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L+  M  +G  PDK +Y  L+   C +GK+  A +  ++ S+    P V     
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG L+ A ++  KM +     D+ TF +L++ +CK   ++   ++  ++    
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 366

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V TY  LI  + K G + +A  +   ++  G +P    Y  +I G       D A 
Sbjct: 367 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 426

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G  P+   Y  LI    + GR  EA     +M      P    +  +  G 
Sbjct: 427 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 486

Query: 308 KNCGKHDLAEKI 319
               + D+A  +
Sbjct: 487 CKLERIDMARTL 498



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G    A  +F    A  C   V+ Y+ L+   C+++    A  L   M
Sbjct: 443 TYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++  +PD  T++ LV  +C++G + +A+  L+EM     +P V     LV G    G +
Sbjct: 503 LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRM 562

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++++ +M K+G   ++ T+ +LI+  C++G+      +   +   G+  +V TY+ L
Sbjct: 563 VEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSL 622

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I      G ++EA ++L  L  D + K     Y  ++ G+ R G+   A      +K  G
Sbjct: 623 IGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSG 682

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PP   +Y  LI    +G    +A   L EMT      P +  ++ V   L   G+H+ A
Sbjct: 683 TPPRHDIYVALIRGLCQGKELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEA 742

Query: 317 EKI 319
             +
Sbjct: 743 NAL 745



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 141/318 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+   L     +   ++    K G +D A++VF   +  +C   V+ Y++L+  
Sbjct: 251 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAG 310

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L  +M      PD  T+  L++  C   +++EAQ+ L+ M D+   P 
Sbjct: 311 LCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ GL   G +  A+++  +MI +G   ++ T+NSLI   C +  V+  + +  
Sbjct: 371 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 430

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   D+ TY  LI  + K G   EA RL  ++      P    Y+ +I G  +  
Sbjct: 431 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 490

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D A   F +M  +   P+   ++ L+      G   +A   L EM     +P    + 
Sbjct: 491 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 550

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + DG    G+   A ++
Sbjct: 551 SLVDGFCKVGRMVEARRV 568



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 117/268 (43%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L  AL   +       +++     G  P+  TYA+++   C SG + +A E L+
Sbjct: 24  VYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLE 83

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + G  P     + ++  L  A     A      M  +  V+   T+  +I+ +CK+ 
Sbjct: 84  EMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVI---TWTIMIDGLCKAN 140

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +      +  + K G   +  TY +LI    K   +  A+ LL  + E G  P    Y+
Sbjct: 141 RLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYS 200

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  R+ + D A+  F +M   G  PN   Y  L++   R G   EA   L EM E 
Sbjct: 201 TVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRER 260

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL P    +D +  GL   GK D+A K+
Sbjct: 261 GLQPDKFSYDTLMAGLCKTGKIDMALKV 288



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%)

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +++  + G   +V TY  L  A+ +A  IDE   +L N    G  P    YA +I+G+ +
Sbjct: 12  HWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVIQGLCK 71

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            G  D A     EM+  G  P+  +Y  +I    +     +A +Y   M
Sbjct: 72  SGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSM 120



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           NC+  +  Y  ++  LC       A  L+  + + G  P    Y  L+   C   ++ +A
Sbjct: 647 NCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKA 706

Query: 107 QEFLQEMS-DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            E L+EM+  +   P     + ++Q L   G  E A  + ++++
Sbjct: 707 MEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 750


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 133/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D  T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 DGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVGLK 384



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + +RM
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EM  KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  RLL  +  +GH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 654

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 2/308 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   ++PQ   +++  F    +V  AVEV ++   + C+    ++  LL
Sbjct: 175 VWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLL 234

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  + P  + +  L+  WC  GK+ EA+  L +M D G  
Sbjct: 235 DALCKNGSVKEAASLFEDM-RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIE 293

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ +M ++    +  ++  LI+++CK   +E    +
Sbjct: 294 PDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRL 353

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  +   G  ADV TY  LI    K G I   + LL  +++ GH P   +Y  I+    +
Sbjct: 354 FVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEK 413

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++     +EM+  G  P+  +Y  +I +  + G   E      EM   GL+P    
Sbjct: 414 KEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDT 473

Query: 300 FDLVTDGL 307
           F ++ +G 
Sbjct: 474 FVIMINGF 481



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           Y    S +  + ++  + K G +  A  V  +      +  +++YN+LL    +      
Sbjct: 255 YRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGD 314

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY L++ M RK   P+  +Y +L+ + C   ++ EA     EM   G    V     L+ 
Sbjct: 315 AYDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLIS 374

Query: 131 GLLNAGYLESAKQMVNKMIKQGF-----------------------------------VL 155
           G    G ++   +++++MI+QG                                      
Sbjct: 375 GFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAP 434

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL  +N++I   CK GEV+  ++++  +   GL   + T+ I+I    + G + EA    
Sbjct: 435 DLSIYNTVIRLACKLGEVKEGIQLWNEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYF 494

Query: 216 HNLVEDG--HKPFPSLYAPIIKGMFRRGQFD---DAF-CFFSEMKIKGHPPNRPVYTMLI 269
             +V  G    P       ++  + R  + +   DA+ C  +    KG   N   +T+ I
Sbjct: 495 KEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKDAWNCITAS---KGCQLNVSAWTIWI 551

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
                 G   EA ++ ++M +  L P    F  +  GLK       A +I
Sbjct: 552 HALFSKGHVKEACSFCIDMMDKDLMPNPDTFAKLMHGLKKLYNRQFAAEI 601



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 1/186 (0%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L++   +A  +  A +++++M K G   D   F  L++ +CK+G V+    ++  + + 
Sbjct: 197 ILMRRFASARMVHKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM-RY 255

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                V  +  L+    K G + EA  +L  + + G +P   +Y  ++ G  + G+  DA
Sbjct: 256 RWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDA 315

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +    EM+ K   PN   YT+LI    +  R  EA    VEM   G       +  +  G
Sbjct: 316 YDLLKEMRRKRCEPNATSYTVLIQSLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISG 375

Query: 307 LKNCGK 312
               GK
Sbjct: 376 FCKWGK 381


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G ++    +F +  A      V  Y+ L+  L +       Y L   M  +G   D R
Sbjct: 563 KAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTR 622

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y I+++ +C SGK+ +A + L+EM  KG  P V     ++ GL     L+ A  +  + 
Sbjct: 623 AYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEA 682

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +   L++  ++SLI+   K G ++    +   + + GL  +  T+  L+ A+ KA  I
Sbjct: 683 KSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEI 742

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA     N+      P    Y+ ++ G+ +  +F+ AF F+ EM+ +G  PN   YT +
Sbjct: 743 DEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTM 802

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I+   R G  +EA +        G  P S C++ + +GL N  K
Sbjct: 803 ISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANK 846



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 145/305 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + MK   L  +  T++++I+   K   +D A  +F       C    + + SL+  L
Sbjct: 432 KVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGL 491

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 + AY L  +M+  G  P+   Y  L+  +   G+  +  +  +EM  +G +P +
Sbjct: 492 GRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDL 551

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +  +  +  AG +E  + +  ++  QG   D+ +++ LI  + K G  +   +++Y 
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYE 611

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  D   Y I+I    K+G +++A++LL  +   G +P    Y  +I G+ +  +
Sbjct: 612 MKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDR 671

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A+  F E K K    N  VY+ LI   G+ GR  EA   L E+ + GLTP +  ++ 
Sbjct: 672 LDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNC 731

Query: 303 VTDGL 307
           + D L
Sbjct: 732 LLDAL 736



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 152/353 (43%), Gaps = 36/353 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L     T + +I    K   VD AVE+F +  +     CV  YN+++  
Sbjct: 292 WKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMG 351

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
              V  F+ AY+L+ R  RKG +P    Y  ++      GK+ EA   L+ M      P 
Sbjct: 352 YGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA-APN 410

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++L+  L  AG LE+A ++ + M + G   ++ T N +I+ +CK+  ++    ++ 
Sbjct: 411 LTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFL 470

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       D  T+  LI  + + G +++A+ L   +++ G  P   +Y  +I+  F+ G
Sbjct: 471 GLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCG 530

Query: 242 QFDDAF-----------------------------------CFFSEMKIKGHPPNRPVYT 266
           + +D                                       F E+K +G  P+   Y+
Sbjct: 531 RKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYS 590

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +LI    +GG   +      EM E GL   +R +++V DG    GK + A ++
Sbjct: 591 ILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQL 643



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 136/291 (46%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  + +      ++ I+ FGK G VD A + F++  +       + + S++  LC+
Sbjct: 260 LDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCK 319

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A  L   +     VP    Y  ++  + S GK  EA   L+    KG  P V  
Sbjct: 320 AERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIA 379

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G +E A +++  M K     +L ++N LI+ +CK+GE+E  +++  S+ 
Sbjct: 380 YNCILTCLGRKGKVEEALRILEAM-KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMK 438

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  ++ T  I+I  + KA  +DEA  +   L      P    +  +I G+ R G+ +
Sbjct: 439 EAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVN 498

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DA+  + +M   G  PN  VYT LI    + GR  +      EM   G +P
Sbjct: 499 DAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSP 549



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 119/252 (47%), Gaps = 5/252 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ +I  M +  F P    Y  L+ A  ++ +       L++M + G+   V     L+ 
Sbjct: 186 AFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLIC 245

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G +++A  ++++M    F  DL  +N  I+   K G+V+   + ++ +   GL  
Sbjct: 246 VFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVP 305

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAFC 248
           D  T+  +I  + KA  +DEA  L   L  D +K  P +YA   +I G    G+F++A+ 
Sbjct: 306 DDVTFTSMIGVLCKAERVDEAVELFEEL--DSNKSVPCVYAYNTMIMGYGSVGKFNEAYS 363

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
                K KG  P+   Y  ++T  GR G+ VE A  ++E  +M   P    ++++ D L 
Sbjct: 364 LLERQKRKGCIPSVIAYNCILTCLGRKGK-VEEALRILEAMKMDAAPNLTSYNILIDMLC 422

Query: 309 NCGKHDLAEKIE 320
             G+ + A K++
Sbjct: 423 KAGELEAALKVQ 434



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 1/314 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M       S  T   ++  F K   +  A  V      F  +     Y +L+ AL
Sbjct: 153 QILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIGAL 212

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                      L+R+M   G+      +  L+  +   G++  A   L EM    FN  +
Sbjct: 213 SAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADL 272

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++ +      G ++ A +  +++  QG V D  TF S+I  +CK+  V+  VE++  
Sbjct: 273 VLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEE 332

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +        V  Y  +I      G  +EA+ LL      G  P    Y  I+  + R+G+
Sbjct: 333 LDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 392

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A      MK+    PN   Y +LI M  + G    A      M E GL P     ++
Sbjct: 393 VEEALRILEAMKMDA-APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNI 451

Query: 303 VTDGLKNCGKHDLA 316
           + D L    + D A
Sbjct: 452 MIDRLCKAQRLDEA 465



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 111/256 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K    MK   L +  +  +++I+ F K G V+ A ++  +      Q  V+ Y S++  
Sbjct: 606 YKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDG 665

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L ++     AY L      K    +   Y+ L++ +   G++ EA   L+E+  KG  P 
Sbjct: 666 LAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN 725

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+  L+ A  ++ A      M       +  T++ ++  +CK  +       + 
Sbjct: 726 TYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQ 785

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K GL  +  TY  +I  +++ G + EA  L       G  P  + Y  +I+G+    
Sbjct: 786 EMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNAN 845

Query: 242 QFDDAFCFFSEMKIKG 257
           +  DA+  F E ++KG
Sbjct: 846 KAMDAYILFEETRLKG 861


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 143/302 (47%), Gaps = 2/302 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P   T + ++      G +D  + +++       Q  V  YN ++ +L +
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A   +++M + G VP+   Y+ L++ +C  G+M EA+     M  KG  P V  
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G      +E A Q++++ +++G V D+ TF ++I  +C++G      +++  +C
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYIC 299

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++ TY +L+  + K G ++EAF L   +     KP   +Y  +I  + + G+  
Sbjct: 300 AHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIK 359

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           D    FS +  +G  PN   YT L+    + G  +EA     +M E G TP    ++++ 
Sbjct: 360 DGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVII 419

Query: 305 DG 306
            G
Sbjct: 420 QG 421



 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 129/278 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            +LS++I  F     VD  + V +K      +  ++ + +LL  LC          L   
Sbjct: 98  HSLSILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDD 157

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G  P+  TY +++N+   SGK  EA  FL++M   G  P V     L+ G    G 
Sbjct: 158 MLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQ 217

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A+ + + M+ +G   ++ T+ SL+   CK   +E  V++     + GL  D+ T+  
Sbjct: 218 MDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTT 277

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + +AG    A +L   +   GH P    Y  ++ G+ + G  ++AF  F EM+   
Sbjct: 278 IISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRST 337

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             PN  +YT+LI    + G+  +       + + GL P
Sbjct: 338 VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKP 375



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+ +   G +D A  VF+   +  C   V  Y SL+   C+++    A  L+   +R
Sbjct: 206 STLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLR 265

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG VPD  T+  +++  C +G+   AQ+  + +   G  P +    +L+ GL   G LE 
Sbjct: 266 KGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEE 325

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  +M +     +L  +  LI+++CK G+++   E++  +   GL  +V TY  L+ 
Sbjct: 326 AFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVG 385

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A+ K G+I EA +L   + EDG  P    Y  II+G  +      A     EM  +G   
Sbjct: 386 ALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSA 445

Query: 261 NRPVYTML 268
           +     +L
Sbjct: 446 DAATRALL 453



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 112/249 (44%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A A  R M+ +  +P    ++ L ++    G         +E+   G    +    +L+ 
Sbjct: 46  ALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILIN 105

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
              +   ++    +++K++K G    + TF +L+  +C  G+++  + +Y  +   GL  
Sbjct: 106 CFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQP 165

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V TY ++I ++SK+G  +EA   L  + + G  P    Y+ +I G   RGQ D+A   F
Sbjct: 166 NVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVF 225

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             M  KG  PN   YT L+    +  R  EA   L E    GL P    F  +  GL   
Sbjct: 226 DLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRA 285

Query: 311 GKHDLAEKI 319
           G+   A+++
Sbjct: 286 GRPLAAQQL 294



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 2/279 (0%)

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           C++ ++ L  ++  +  +     L + +   G   D  + +IL+N +C   ++      L
Sbjct: 61  CIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSVL 120

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            ++   G  P +     L+ GL   G ++    + + M+ +G   ++ T+N +I ++ KS
Sbjct: 121 SKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKS 180

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+    +     + K+G   +V  Y  LI      G +DEA  +   +V  G  P    Y
Sbjct: 181 GKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTY 240

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G  +  + ++A     E   KG  P+   +T +I+   R GR + A      +  
Sbjct: 241 TSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICA 300

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            G TP    + ++ DGL  C   +L E   L +   RS 
Sbjct: 301 HGHTPNIMTYGVLLDGL--CKHGNLEEAFALFQEMQRST 337



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   KHG ++ A  +F +      +  +++Y  L+ +LC+         L  R+
Sbjct: 309 TYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRL 368

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P+  TY  LV A C  G + EA +  ++M + G  P     ++++QG L     
Sbjct: 369 IDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDP 428

Query: 139 ESAKQMVNKMIKQGFVLDLET 159
             A+Q+V +M+ +GF  D  T
Sbjct: 429 SMARQLVEEMVNRGFSADAAT 449



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    + G    A ++F    A      ++ Y  LL  LC+      A+AL + M
Sbjct: 274 TFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEM 333

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R    P+   Y IL+++ C  GK+++ +E    + D+G  P V     LV  L   G +
Sbjct: 334 QRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLI 393

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  KM + G   D   +N +I+   +  +     ++   +   G  AD +T  +L
Sbjct: 394 IEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 133/268 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++YN+++ +LC+ KL   AY L  +MI K   PD  T++ L+  +C  G++ EA    +
Sbjct: 208 VVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFR 267

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP     ++LV  L   G L+ AK M+  M+K+G + ++ T++SL++  C   
Sbjct: 268 EMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVN 327

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V     +  ++ ++G   +  +Y  +I    K  M+DEA  L +++   G  P    Y 
Sbjct: 328 QVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYN 387

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+   A+    EM   G P N   Y  LI    +     +A   + ++ + 
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQ 447

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    F+++  GL   G+   A+ +
Sbjct: 448 GIQPDMYTFNILIYGLCKVGRLKNAQDV 475



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 36/342 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   KH LV +A E++++  A      V+ +++L++  C V     A+ L R M+ K 
Sbjct: 214 IIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKN 273

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T+ ILV+A C  G ++ A+  L  M  +G  P V     L+ G      +  AK
Sbjct: 274 INPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAK 333

Query: 143 QMVN------------------------KMIKQGFVL-----------DLETFNSLIETI 167
            ++N                        KM+ +   L           D  T+NSLI+ +
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGL 393

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKSG + +  E+   +   G  A++ TY  LI A+ K   +D+A  L+  + + G +P  
Sbjct: 394 CKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDM 453

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  +I G+ + G+  +A   F ++  KG+  N   Y +++    + G F EA   L +
Sbjct: 454 YTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSK 513

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           M + G+ P +  ++ +   L +  +++ AEK+ L E+  R V
Sbjct: 514 MDDNGIIPDAVTYETLIQALFHKDENEKAEKL-LREMIARDV 554



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 128/276 (46%), Gaps = 2/276 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH--GAYALIRRMIRKGFVPDKRTY 90
           VDN V  FN          ++ +N +L +L +    H   A +L RR+   G  PD  T+
Sbjct: 47  VDNVVSSFNHLLRTKPTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTF 106

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            IL+N +C   +M  A   + ++   G+ P     + L++GL   G ++ A    + ++ 
Sbjct: 107 NILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLA 166

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF LD  ++ +LI  +CK GE    ++M   +    +  +V  Y  +I ++ K  ++ +
Sbjct: 167 LGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVID 226

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ L   ++     P    ++ +I G    GQ ++AF  F EM +K   P+   + +L+ 
Sbjct: 227 AYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              + G    A N LV M + G+ P    +  + DG
Sbjct: 287 ALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDG 322



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 123/307 (40%), Gaps = 37/307 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR------- 104
            + +N+L+  LC       A      ++  GF  D+ +Y  L+N  C  G+ R       
Sbjct: 138 TITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLR 197

Query: 105 ----------------------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
                                       +A E   +M  K  +P V     L+ G    G
Sbjct: 198 KIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVG 257

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            LE A  +  +M+ +    D  TFN L++ +CK G ++    M   + K G+  +V TY 
Sbjct: 258 QLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYS 317

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+        +++A  +L+ + + G  P    Y  +I G  +    D+A   F++M+ K
Sbjct: 318 SLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFK 377

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P++  Y  LI    + GR   A   + EM + G       ++ + D L  C  H + 
Sbjct: 378 GIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDAL--CKNHHVD 435

Query: 317 EKIELLE 323
           + I L++
Sbjct: 436 QAIALVK 442



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M       +  T + +I+   K+  VD A+ +  K      Q  +  +N L++ 
Sbjct: 403 WELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYG 462

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+V     A  + + ++ KG+  +  TY I+VN  C  G   EA+  L +M D G  P 
Sbjct: 463 LCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPD 522

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE-FCVEMY 180
               + L+Q L +    E A++++ +MI +  V  LE    ++    ++ + E F  + Y
Sbjct: 523 AVTYETLIQALFHKDENEKAEKLLREMIARDVVYALEGLEMVLHLESEAKDQEKFGKKGY 582

Query: 181 Y------------SVCKLGLCADV 192
           Y            +V +L LC D+
Sbjct: 583 YAITTNLGQGLISAVVQLSLCIDL 606


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P+ +  + +I  +   G +D A+   ++         V  YN L+ AL        AY
Sbjct: 587 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 646

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  PD  TY IL+N  C  G +++A E  + MS +G    V     L+  L
Sbjct: 647 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 706

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++   ++ ++ +++G   DL  +N+LI +   SG ++   E+   + K  +  D 
Sbjct: 707 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 766

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  +   G +DEA +L+  + E G +P    Y  +I G   +G   DA    +E
Sbjct: 767 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 826

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG  P    Y  LI    + G+  +A N + EM E G+TP    +  + +GL
Sbjct: 827 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L+    T +++I    K G V  A+E+F   +    +  V+ Y +L++A
Sbjct: 646 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 705

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +         L    +R+G  PD   Y  L+N+  +SG +  A E + EM  K   P 
Sbjct: 706 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 765

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++GL   G ++ A++++++M ++G   DL T+N+LI      G+V+  + +  
Sbjct: 766 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 825

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K G  D+A  ++  +VE+G  P  S Y  +I+G+
Sbjct: 826 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 881



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 143/364 (39%), Gaps = 86/364 (23%)

Query: 18  QTLSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++LSL I     H L+       A  +F          C   +N +L  LC       A 
Sbjct: 449 KSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL 508

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--------- 123
            L+R+M R    P+  TY  ++  +CS G+++ A + ++EM ++G   P +         
Sbjct: 509 ELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 564

Query: 124 ----GR------------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               GR                        + L+ G  + G L++A    ++M+++G  +
Sbjct: 565 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 624

Query: 156 DLETFNSLIETI-----------------------------------CKSGEVEFCVEMY 180
            + T+N L+  +                                   CK G V+  +E++
Sbjct: 625 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 684

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++ + G+ A V TY  LI A+SK G + E  +L    V  G +P   LY  +I      
Sbjct: 685 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 744

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D AF    EM+ K   P+   Y  L+      GR  EA   + EMTE G+ P     
Sbjct: 745 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP----- 799

Query: 301 DLVT 304
           DLVT
Sbjct: 800 DLVT 803



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 97/185 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V    ++F++      +  ++LYN+L+ +         A+ ++  M
Sbjct: 698 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 757

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  TY  L+   C  G++ EA++ + EM+++G  P +   + L+ G    G +
Sbjct: 758 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 817

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ N+M+ +GF   L T+N+LI+ +CK+G+ +    M   + + G+  D STY  L
Sbjct: 818 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 877

Query: 199 IPAVS 203
           I  ++
Sbjct: 878 IEGLT 882



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G +D A E+  +          + YN+L+  LC +     A  LI  M  +G
Sbjct: 737 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 796

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +   G +++A     EM +KGFNP +   + L+QGL   G  + A+
Sbjct: 797 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 856

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            MV +M++ G   D  T+ SLIE +    E
Sbjct: 857 NMVKEMVENGITPDDSTYISLIEGLTTEDE 886


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T   +I  + K G VD AV+VF++  T    +   ++YN+L+   C+      A     R
Sbjct: 110 TYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDR 169

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G      TY +LV+A    G+  EA E ++EM  KG  P V   ++L+ G    G 
Sbjct: 170 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGN 229

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A ++   M ++G    + T+ SLI  + K G+V+   +++    + G+  D+  Y  
Sbjct: 230 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 289

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI + S +G ID AF ++  + +    P    Y  +++G+   G+ D+A     EM  +G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  LI+     G   +A     EM   G  P    ++ +  GL   G+ D AE
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 318 KI 319
            +
Sbjct: 410 NM 411



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P+ +  + +I  +   G +D A+   ++         V  YN L+ AL        AY
Sbjct: 140 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 199

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  PD  TY IL+N  C  G +++A E  + MS +G    V     L+  L
Sbjct: 200 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 259

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++   ++ ++ +++G   DL  +N+LI +   SG ++   E+   + K  +  D 
Sbjct: 260 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 319

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  +   G +DEA +L+  + + G +P    Y  +I G   +G   DA    +E
Sbjct: 320 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 379

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG  P    Y  LI    + G+  +A N + EM E G+TP    +  + +GL
Sbjct: 380 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 117/236 (49%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L+    T +++I    K G V  A+E+F   +    +  V+ Y SL++A
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +         L    +R+G  PD   Y  L+N+  +SG +  A E + EM  K   P 
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++GL   G ++ A++++++M K+G   DL T+N+LI      G+V+  + +  
Sbjct: 319 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 378

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K G  D+A  ++  +VE+G  P  S Y  +I+G+
Sbjct: 379 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 434



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 131/326 (40%), Gaps = 81/326 (24%)

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           C   +N +L  LC       A  L+R+M R    P+  TY  ++  +CS G+++ A + +
Sbjct: 40  CTTTFNIMLRHLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIM 95

Query: 111 QEMSDKGFNPPVR-------------GR------------------------DLLVQGLL 133
           +EM ++G   P +             GR                        + L+ G  
Sbjct: 96  REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 155

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI-------------------------- 167
           + G L++A    ++M+++G  + + T+N L+  +                          
Sbjct: 156 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 215

Query: 168 ---------CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
                    CK G V+  +E++ ++ + G+ A V TY  LI A+SK G + E  +L    
Sbjct: 216 TYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEA 275

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           V  G +P   LY  +I      G  D AF    EM+ K   P+   Y  L+      GR 
Sbjct: 276 VRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRV 335

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVT 304
            EA   + EMT+ G+ P     DLVT
Sbjct: 336 DEARKLIDEMTKRGIQP-----DLVT 356



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 100/198 (50%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    +  +  T + +I    K G V    ++F++      +  ++LYN+L+ +    
Sbjct: 238 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 297

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ ++  M +K   PD  TY  L+   C  G++ EA++ + EM+ +G  P +   
Sbjct: 298 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTY 357

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G ++ A ++ N+M+ +GF   L T+N+LI+ +CK+G+ +    M   + +
Sbjct: 358 NTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVE 417

Query: 186 LGLCADVSTYKILIPAVS 203
            G+  D STY  LI  ++
Sbjct: 418 NGITPDDSTYISLIEGLT 435



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G +D A E+  +          + YN+L+  LC +     A  LI  M ++G
Sbjct: 290 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 349

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +   G +++A     EM +KGFNP +   + L+QGL   G  + A+
Sbjct: 350 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 409

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            MV +M++ G   D  T+ SLIE +    E
Sbjct: 410 NMVKEMVENGITPDDSTYISLIEGLTTEDE 439


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  123 bits (308), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 148/306 (48%), Gaps = 6/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G V +A+ VF+      C   V+ Y+ LL A C+   +  A  L+  M
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEM 223

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY +L+NA C+ G + EA   L ++   G  P       +++ L  +   
Sbjct: 224 RAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERW 283

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +  +++  +M       D  TFN+++ ++C+ G V+  +++   + + G   D+ TY  +
Sbjct: 284 KEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSI 343

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A  LL  L   G KP    Y  ++KG+    Q++ A    +EM     
Sbjct: 344 LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDC 403

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP+   + T++ ++C +G   V+ A  +VE M+E G  P    ++ + DGL  C +  + 
Sbjct: 404 PPDEVTFNTVIASLCQKG--LVDRAIKVVEQMSENGCNPDIVTYNSIIDGL--CNERCID 459

Query: 317 EKIELL 322
           + +ELL
Sbjct: 460 DAMELL 465



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 145/311 (46%), Gaps = 5/311 (1%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           KP  ++ +P   SL   E  K        E+F +  +  C    + +N+++ +LC+  L 
Sbjct: 264 KPDAVTYTPVLKSLCGSERWKE-----VEELFAEMASNKCAPDEVTFNTIVTSLCQQGLV 318

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  ++  M   G +PD  TY+ +++  C  G++ +A E L  +   G  P       +
Sbjct: 319 DRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTV 378

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL +    E A++++ +M+      D  TFN++I ++C+ G V+  +++   + + G 
Sbjct: 379 LKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGC 438

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D+ TY  +I  +     ID+A  LL NL   G KP    +  ++KG+    +++DA  
Sbjct: 439 NPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQ 498

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M     PP+   +  +IT   + G  ++A   L  M E G  P    +++V D L 
Sbjct: 499 LMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALL 558

Query: 309 NCGKHDLAEKI 319
             GK   A K+
Sbjct: 559 KAGKTQEALKL 569



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 144/297 (48%), Gaps = 10/297 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M  +       T S I++     G VD+AVE+ ++  ++ C+   + Y ++L  L
Sbjct: 323 KVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGL 382

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C ++ +  A  L+  M+     PD+ T+  ++ + C  G +  A + +++MS+ G NP +
Sbjct: 383 CSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDI 442

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVE 178
              + ++ GL N   ++ A ++++ +   G   D+ TFN+L++ +C     E      V 
Sbjct: 443 VTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVN 502

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           M +S C      D +T+  +I ++ + G++ +A   L  + E+G  P  S Y  ++  + 
Sbjct: 503 MMHSDCP----PDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALL 558

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + G+  +A    S M      P+   Y  +I+   + G+  EA + L  M   GL+P
Sbjct: 559 KAGKTQEALKLLSGM--TNGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSP 613



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 2/291 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M     +    T + II+       +D+A+E+ +   ++ C+  ++ +N+LL  L
Sbjct: 428 KVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGL 487

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C V  +  A  L+  M+     PD  T+  ++ + C  G + +A E L+ M++ G  P  
Sbjct: 488 CSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQ 547

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++V  LL AG  + A ++++ M       DL T+N++I  I K+G++E  +++   
Sbjct: 548 STYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRV 605

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D  TY+ L   + +    D A R+L  L + G  P  + Y  I+ G  +  +
Sbjct: 606 MVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWR 665

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            D A   F+ M   G  P+   Y +L+          EA   LV +  +G+
Sbjct: 666 TDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 146/327 (44%), Gaps = 8/327 (2%)

Query: 2   WKTIEL----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +E     M     +    T + I+    + GLVD A++V +  +   C   ++ Y+S
Sbjct: 283 WKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSS 342

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  LC+V     A  L+ R+   G  PD   Y  ++   CS  +   A+E + EM    
Sbjct: 343 ILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSD 402

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     + ++  L   G ++ A ++V +M + G   D+ T+NS+I+ +C    ++  +
Sbjct: 403 CPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAM 462

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+  ++   G   D+ T+  L+  +      ++A +L+ N++     P  + +  +I  +
Sbjct: 463 ELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSL 522

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A      M   G  PN+  Y +++    + G+  EA   L  MT    TP  
Sbjct: 523 CQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDL 580

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLEV 324
             ++ V   +   GK  + E ++LL V
Sbjct: 581 ITYNTVISNITKAGK--MEEALDLLRV 605



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 126/289 (43%), Gaps = 2/289 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    + GLVD A++V  + +   C   ++ YNS++  LC  +    A  L+  +
Sbjct: 409 TFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL 468

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  T+  L+   CS  +  +A++ +  M      P     + ++  L   G L
Sbjct: 469 QSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLL 528

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + +  M + G + +  T+N +++ + K+G+ +  +++   +       D+ TY  +
Sbjct: 529 LQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTV 586

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++KAG ++EA  LL  +V +G  P    Y  +  G+ R    D A      ++  G 
Sbjct: 587 ISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGL 646

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  ++    +  R   A +    M   G  P    + ++ + L
Sbjct: 647 SPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEAL 695



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 74  LIRRMIRKGFVPDKR-------------TYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           LI+R+   G V D               TY  +VN +C +G++ +A+  +  M    F P
Sbjct: 104 LIKRLCSGGRVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMP---FPP 160

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L++ L   G +  A  + + M+ +G    + T++ L++  CK+      + + 
Sbjct: 161 DTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLL 220

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   D+ TY +LI A+   G +DEA  +L +L   G KP    Y P++K +   
Sbjct: 221 DEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGS 280

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            ++ +    F+EM      P+   +  ++T   + G    A   +  M+E G  P    +
Sbjct: 281 ERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTY 340

Query: 301 DLVTDGLKNCGKHDLAEKIELL 322
             + DGL + G+ D  + +ELL
Sbjct: 341 SSILDGLCDVGRVD--DAVELL 360



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 41/334 (12%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+     G V +A  VF           V+ YN+++   C       A  LI  M  
Sbjct: 102 NILIKRLCSGGRVADAERVF---ATLGASATVVTYNTMVNGYCRAGRIEDARRLISGM-- 156

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
             F PD  T+  L+ A C  G++ +A     +M  +G +P V    +L+     A     
Sbjct: 157 -PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQ 215

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE-------------------------- 174
           A  ++++M  +G   D+ T+N LI  +C  G+V+                          
Sbjct: 216 AMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLK 275

Query: 175 -FC-------VEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C       VE  ++      CA D  T+  ++ ++ + G++D A +++ ++ E G  P
Sbjct: 276 SLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIP 335

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y+ I+ G+   G+ DDA    S +K  G  P+   YT ++       ++  A   +
Sbjct: 336 DIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELM 395

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EM      P    F+ V   L   G  D A K+
Sbjct: 396 AEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKV 429


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P+ +  + +I  +   G +D A+   ++         V  YN L+ AL        AY
Sbjct: 582 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 641

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG  PD  TY IL+N  C  G +++A E  + MS +G    V     L+  L
Sbjct: 642 ELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYAL 701

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++   ++ ++ +++G   DL  +N+LI +   SG ++   E+   + K  +  D 
Sbjct: 702 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 761

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  +   G +DEA +L+  + E G +P    Y  +I G   +G   DA    +E
Sbjct: 762 VTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 821

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG  P    Y  LI    + G+  +A N + EM E G+TP    +  + +GL
Sbjct: 822 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 117/236 (49%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L+    T +++I    K G V  A+E+F   +    +  V+ Y +L++A
Sbjct: 641 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 700

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +         L    +R+G  PD   Y  L+N+  +SG +  A E + EM  K   P 
Sbjct: 701 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 760

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++GL   G ++ A++++++M ++G   DL T+N+LI      G+V+  + +  
Sbjct: 761 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 820

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K G  D+A  ++  +VE+G  P  S Y  +I+G+
Sbjct: 821 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 876



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 143/364 (39%), Gaps = 86/364 (23%)

Query: 18  QTLSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++LSL I     H L+       A  +F          C   +N +L  LC       A 
Sbjct: 444 KSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL 503

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--------- 123
            L+R+M R    P+  TY  ++  +CS G+++ A + ++EM ++G   P +         
Sbjct: 504 ELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 559

Query: 124 ----GR------------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               GR                        + L+ G  + G L++A    ++M+++G  +
Sbjct: 560 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 619

Query: 156 DLETFNSLIETI-----------------------------------CKSGEVEFCVEMY 180
            + T+N L+  +                                   CK G V+  +E++
Sbjct: 620 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIF 679

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++ + G+ A V TY  LI A+SK G + E  +L    V  G +P   LY  +I      
Sbjct: 680 ENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 739

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D AF    EM+ K   P+   Y  L+      GR  EA   + EMTE G+ P     
Sbjct: 740 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP----- 794

Query: 301 DLVT 304
           DLVT
Sbjct: 795 DLVT 798



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 97/185 (52%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V    ++F++      +  ++LYN+L+ +         A+ ++  M
Sbjct: 693 TYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 752

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  TY  L+   C  G++ EA++ + EM+++G  P +   + L+ G    G +
Sbjct: 753 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDV 812

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ N+M+ +GF   L T+N+LI+ +CK+G+ +    M   + + G+  D STY  L
Sbjct: 813 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 872

Query: 199 IPAVS 203
           I  ++
Sbjct: 873 IEGLT 877



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G +D A E+  +          + YN+L+  LC +     A  LI  M  +G
Sbjct: 732 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERG 791

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +   G +++A     EM +KGFNP +   + L+QGL   G  + A+
Sbjct: 792 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 851

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            MV +M++ G   D  T+ SLIE +    E
Sbjct: 852 NMVKEMVENGITPDDSTYISLIEGLTTEDE 881


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 148/302 (49%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           YN S +  + S II+ F K G VD A  +F++         V+ Y+SL+  LC+ +  + 
Sbjct: 197 YNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNK 256

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A A+++ M  KG +P+ RTY I++  +CS G++ EA   L++MS  G  P V    LL+Q
Sbjct: 257 AEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQ 316

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G    A+ + + M+++G   +   ++ L+      G +    ++   + + G+  
Sbjct: 317 YYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPF 376

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +   + ILI A +K G +D+A      + ++G +P    Y+ +I  + + G+ +DA   F
Sbjct: 377 EHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHF 436

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           ++M  +G  PN   +T LI      G + +      EM   G+ P +   + + D L   
Sbjct: 437 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496

Query: 311 GK 312
           G+
Sbjct: 497 GR 498



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 137/293 (46%), Gaps = 4/293 (1%)

Query: 2   WKTIELM--KPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +E +  +  N  + P    ++ I++   K G V  A + F+       +  V+ YN+
Sbjct: 464 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNT 523

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C V     +     RM+  G  PD  TY  L+N +  +G++ +A    +EM  K 
Sbjct: 524 LIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKD 583

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   ++++ GL  AG + +A+++  KM+ +G  L +ET+N+++  +C++  V+  +
Sbjct: 584 VKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEAL 643

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            M+  +       DV T+ I+I A+ K G IDEA  L   +V  G  P    Y+ +IK  
Sbjct: 644 RMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSR 703

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
              G  +++   F  M+  G   +  +  ++I      G    A  YL ++ E
Sbjct: 704 IEEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDE 756



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 4/265 (1%)

Query: 56  NSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           N L+  LC+ K    A  ++ RRM   G+ PD  +Y  L+   C   K +EA E L  M+
Sbjct: 133 NQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMT 192

Query: 115 -DKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            D G+N  P V     ++ G    G ++ A  + ++MI QGF  D+ T++SLI+ +CK+ 
Sbjct: 193 ADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQ 252

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +     +   +   G+  +  TY I+I      G ++EA RLL  +   G +P    Y 
Sbjct: 253 AMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYI 312

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I+   + G+  +A   F  M  KG  PN  +Y +L+      G  ++  + L  M   
Sbjct: 313 LLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRD 372

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G+    R F+++       G  D A
Sbjct: 373 GIPFEHRAFNILICAYAKHGAVDKA 397



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 122/274 (44%), Gaps = 3/274 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+ A  +      A      M + G  PD  +Y+ +++  C  G++ +A     +M 
Sbjct: 381 FNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMV 440

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G +P +     L+ GL + G  +  +++  +MI +G   D    N++++ +CK G V 
Sbjct: 441 SEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVV 500

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              + +  V  +G+  +V +Y  LI      G +DE+ +    +V  G +P    Y  ++
Sbjct: 501 EAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALL 560

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G F+ G+ +DA   + EM  K          +++    + GR V A    ++M + G  
Sbjct: 561 NGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQ 620

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
                ++ V  GL  C    + E + + E  LRS
Sbjct: 621 LRIETYNTVLGGL--CENSCVDEALRMFE-DLRS 651



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 35/331 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     + S +I    K G V++AV  FN+  +      ++ + SL+  LC +  
Sbjct: 404 MRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGE 463

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L   MI +G  PD      +++  C  G++ EAQ+F   +   G  P V   + 
Sbjct: 464 WKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNT 523

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE------------- 174
           L+ G    G ++ + +  ++M+  G   D  T+N+L+    K+G VE             
Sbjct: 524 LIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKD 583

Query: 175 --FCV--------------------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             FC                     E+Y  +   G    + TY  ++  + +   +DEA 
Sbjct: 584 VKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEAL 643

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+  +L     +     +  +I  + + G+ D+A   FS M ++G  P+   Y+++I   
Sbjct: 644 RMFEDLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSR 703

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              G   E+ +  + M + G    S   +++
Sbjct: 704 IEEGLLEESDDLFLSMEKNGCAADSHMLNVI 734



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 119/294 (40%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  L+I+ + K G    A  VF+       +    +Y+ LL              L+  M
Sbjct: 310 TYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLM 369

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR G   + R + IL+ A+   G + +A     EM   G  P V     ++  L   G +
Sbjct: 370 IRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRV 429

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A    N+M+ +G   ++ +F SLI  +C  GE +   E+ + +   G+  D      +
Sbjct: 430 EDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTI 489

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G + EA      ++  G KP    Y  +I G    G+ D++   F  M   G 
Sbjct: 490 MDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGL 549

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   Y  L+    + GR  +A     EM    +   +   +++  GL   G+
Sbjct: 550 RPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGR 603



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 9/225 (4%)

Query: 106 AQEFLQEMSDKGFNPPVRGR---DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           A      M+  G N     R    +L++     G L+ A       +K G+ +   T N 
Sbjct: 75  AVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQ 134

Query: 163 LIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           LI+ +C     +  ++M +  + +LG   DV +Y  LI  +       EA  LL ++  D
Sbjct: 135 LIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTAD 194

Query: 222 GH---KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           G     P    Y+ II G F+ G+ D A+  F EM  +G PP+   Y+ LI    +    
Sbjct: 195 GGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAM 254

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +A   L  M + G+ P +R ++++  G   C    L E + LL+
Sbjct: 255 NKAEAILQHMFDKGVMPNTRTYNIMIRGY--CSLGQLEEAVRLLK 297



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 81/186 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++I+    + G +  A E++ K      Q  +  YN++L  LCE      A  +   +
Sbjct: 590 TSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDL 649

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K F  D  T+ I++NA    G++ EA+     M  +G  P V    L+++  +  G L
Sbjct: 650 RSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLL 709

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E +  +   M K G   D    N +I  + + G+V         + +     + ST  +L
Sbjct: 710 EESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALL 769

Query: 199 IPAVSK 204
           IP VS+
Sbjct: 770 IPIVSE 775


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 128/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA E L EM D G  P       L+ G    G ++
Sbjct: 199 ATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ QGF+ DL T+N+LI  +C+ G++    ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++  F L   ++ +  +     Y  +I G+ R G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM++    + G    A+  L EM   G  P
Sbjct: 379 PDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVP 414



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 119/255 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M+  G VP+  T+  L++  C +GK+  A E  ++M  +GF P +   
Sbjct: 220 SKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L  A+ +V +MI +G   D  T+ +LI+  CK G++E   E+   + +
Sbjct: 280 NTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIR 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D  TY  LI  + + G   +A ++L  ++  G KP    Y  I+    + G    
Sbjct: 340 ENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKT 399

Query: 246 AFCFFSEMKIKGHPP 260
           A     EM+  G  P
Sbjct: 400 ASKLLREMQRNGPVP 414



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 117/266 (43%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A  +   + +    P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A +M+N+M+  G V +  TF +LI+  CK+G+V
Sbjct: 198 HATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +   G   D+ TY  LI  + + G + +A  L+  ++  G KP    Y  +
Sbjct: 258 DLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  +  F     M  +    +   YT LI+   R GR  +A   L EM  +GL
Sbjct: 318 IDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P +  + ++ +     G    A K+
Sbjct: 378 KPDNGTYTMIMNEFCKTGDVKTASKL 403



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 77/192 (40%)

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+   L +G++  A Q      K    +  +T   ++E + K          Y  + + G
Sbjct: 72  LMLAYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECG 131

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               +  + IL+    K G +  A  +   + +   +P    +  ++ G  R G  D+ F
Sbjct: 132 YPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGF 191

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              S M   G  P+   Y++LI    +  +  EA   L EM + GL P    F  + DG 
Sbjct: 192 RLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGH 251

Query: 308 KNCGKHDLAEKI 319
              GK DLA +I
Sbjct: 252 CKNGKVDLAMEI 263



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L     T + +I+   K G ++   E+  +    N +   + Y +L+  LC 
Sbjct: 299 VEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCR 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  PD  TY +++N +C +G ++ A + L+EM   G  P V
Sbjct: 359 EGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGV 416


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A   F++  +  C   V+ Y +LL A  + K 
Sbjct: 478 MKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQ 537

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--------SDKGF- 118
            + A  +  RM+     P+  TY+ L++  C +G++++A E   ++        SD  F 
Sbjct: 538 LYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFE 597

Query: 119 -------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
                  +P V     LV GL  A  +  A  +++ M+  G   +   +++L++  CK G
Sbjct: 598 GKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVG 657

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E++   E++  + K G    V TY  LI  + K G +D A ++L  +++D   P    Y 
Sbjct: 658 EIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYT 717

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ + G+ + A    S M+ KG  PN   YT LI   G+ G+        ++M   
Sbjct: 718 AMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTK 777

Query: 292 GLTP 295
           G  P
Sbjct: 778 GCAP 781



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 127/278 (45%), Gaps = 16/278 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  ++  LC+ K    A+ L + M + G  PD  TY IL++++C +G + +AQ +  EM 
Sbjct: 455 YTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMR 514

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +P V     L+   L +  L  A  + ++M+      +  T+++LI+ +CK+GE++
Sbjct: 515 SAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQ 574

Query: 175 FCVEMYYSVCKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              E+Y  +                    +  +V TY  L+  + KA  + +A  LL  +
Sbjct: 575 KACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAM 634

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +  G +P   +Y  ++ G  + G+ D A   F  M   G+ P+   YT LI    + GR 
Sbjct: 635 LAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRL 694

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             A   L +M +    P    +  + DGL   G+ + A
Sbjct: 695 DLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKA 732



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           EE     L+D A +V+ +    +C    +   +    LC V  F  A+ +++ M+RKGFV
Sbjct: 390 EELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFV 449

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  ++   C + ++ +A    QEM   G NP V    +L+     AG +E A+  
Sbjct: 450 PDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSW 509

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            ++M   G   ++ T+ +L+    KS ++    ++++ +       +  TY  LI  + K
Sbjct: 510 FDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCK 569

Query: 205 AGMIDEAFRLLHNLV----------------EDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           AG I +A  +   L+                 D   P    Y  ++ G+ +  +  DA  
Sbjct: 570 AGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHD 629

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN+ VY  L+    + G    A    + MT+ G  P    +  + D + 
Sbjct: 630 LLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 690 KDGRLDLAMKV 700



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 4/280 (1%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++SP   T   ++    K   V +A ++ +   A  C+   ++Y++L+   C+V     A
Sbjct: 603 TISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSA 662

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +  RM + G++P   TY  L++     G++  A + L +M     NP V     +V G
Sbjct: 663 QEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDG 722

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G  E A  +++ M K+G   ++ T+ +LI+ + K+G+V+  +E++  +   G   +
Sbjct: 723 LCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPN 782

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY+ILI     AG++D+A  LL  + +     +   Y   ++G  +R  F  +     
Sbjct: 783 YVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKR--FLASLGLLE 840

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           EM+     P  PVY MLI    + GR   A     EM E+
Sbjct: 841 EMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEV 880



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 121/349 (34%), Gaps = 73/349 (20%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L++++      GL   A+E   +   F  +   + YN+L+  L        A+ + + M 
Sbjct: 172 LNVLVRRCCLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMS 231

Query: 80  RKGFVPDKRTYAILVNAWCSSGK--------------------------------MREAQ 107
             GF  D+ T      A C  G+                                  EA 
Sbjct: 232 ASGFCMDRSTVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAM 291

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            FL  M    + P V     L+ G L    L   K+++N M+ +G       FNSL+ T 
Sbjct: 292 SFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTY 351

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV------------------------- 202
           C + +  +  +++  +   G       Y I I ++                         
Sbjct: 352 CNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVA 411

Query: 203 ----------------SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                              G  ++AF+++  ++  G  P  S Y  +I  + +  + D A
Sbjct: 412 SCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKA 471

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           F  F EMK  G  P+   YT+LI    + G   +A ++  EM   G +P
Sbjct: 472 FLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSP 520



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 37/251 (14%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           AL EV  F        R++R+    D+    R   +LV   C  G   EA E L  + D 
Sbjct: 139 ALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDF 198

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG----- 171
           G+ P     + LVQ L +AG +E A ++  +M   GF +D  T  S  + +CK G     
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDA 258

Query: 172 -----------EVEFCVEMYYSVCKLGL----------------CADVSTYKILIPAVSK 204
                      +   C +M   + +  L                  +V TY+ L+    K
Sbjct: 259 LDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLK 318

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              +    R+++ ++ +G  P PSL+  ++        +  A+  F+ M   G PP   V
Sbjct: 319 KKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVV 378

Query: 265 YTMLI-TMCGR 274
           Y + I ++CGR
Sbjct: 379 YNIFIGSICGR 389



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 118/268 (44%), Gaps = 36/268 (13%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+   K G +D A++V ++    +C   V+ Y +++  LC+      A  L+
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M +KG  P+  TY  L++    +GK+    E   +M  KG  P      +L+     A
Sbjct: 737 SLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAA 796

Query: 136 G-------------------YLESAKQMVNKMIKQ-----GFVLDLETFNS--------- 162
           G                   YL+  +  V    K+     G + ++E+ ++         
Sbjct: 797 GLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGM 856

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVST---YKILIPAVSKAGMIDEAFRLLHNLV 219
           LI++  K+G +E  +E++  + ++    ++++   +  LI A+  +  ++EA  L   + 
Sbjct: 857 LIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMR 916

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             G  P  S +  ++KG+  R ++++A 
Sbjct: 917 RRGIVPDLSAFVCLVKGLIERNKWNEAL 944



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 40/242 (16%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G  + A+ + +      C   V+ Y +L+  L +         L  +M
Sbjct: 715 TYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQM 774

Query: 79  IRKGFVPDKRTYAILVNAWCSSG----------KMREAQ--------------------- 107
             KG  P+  TY IL+N  C++G          +M++                       
Sbjct: 775 KTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLA 834

Query: 108 --EFLQEMSDKGFNP--PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET---F 160
               L+EM      P  PV G  +L+     AG LE+A ++  +M++    L++ +    
Sbjct: 835 SLGLLEEMESHDTAPIAPVYG--MLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMH 892

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            SLI+ +C S +VE  V +Y  + + G+  D+S +  L+  + +    +EA +L + + +
Sbjct: 893 TSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQ 952

Query: 221 DG 222
           +G
Sbjct: 953 EG 954



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFA 61
           +E M+ ++ +       ++I+ F K G ++ A+E+  +    +    +    ++ SL+ A
Sbjct: 839 LEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQA 898

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           LC       A AL   M R+G VPD   +  LV       K  EA +    +  +G N
Sbjct: 899 LCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGVN 956


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K+G +  A+ +  +    + Q  +++Y++L+  LC+      A  L  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G + D  TY  L++  CS G+ +E  + L +M  +  +P     ++L+  L   G +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ ++  M K+G   D+ T+N+L+E  C    V    E++  + K GL  DV  Y +L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  M+DEA  L   L      P  + Y  +I G+   G+         EM     
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           PP+   Y +LI    + GR +EA   LV M + G+ P    ++ + DG
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 143/309 (46%), Gaps = 4/309 (1%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+ +   L K    +V P   T +++I+   K G +  A  V    +    +  ++ YN+
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNA 305

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C  +  H A  L  RM+++G  PD   Y +L++ +C +  + EA    +E+ +K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + L+ GL N+G +   K+++++M       D+ T+N LI+ +CK G +   +
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   + K G+  ++ TY  ++        ++ A  + + +V+ G +P    Y  +I G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +    D+A   F EM+ K   P+   Y  LI      GR       L EM + G +P  
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 298 RCFDLVTDG 306
             ++++ D 
Sbjct: 546 ITYNILLDA 554



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 124/268 (46%), Gaps = 1/268 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN L+ ALC+      A  ++  M++KG  P+  TY  +++ +C    +  A++   
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P +   ++L+ G      ++ A  +  +M  +  + D+ ++NSLI+ +C  G
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +    E+   +C  G   DV TY IL+ A  K    D+A  L   +VE     F + +A
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHA 584

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I+  + +  +   A      + + G  PN   YT+LI    + G F EA   L +M + 
Sbjct: 585 -IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              P +  F+++   L    + D AEK+
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKL 671



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  ++ +N+++   C   +   A    + ++ +G++ D+ TY  L+N    +G+++ A  
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            LQEM      P +     L+ GL   G++  A  + +++ ++G +LD  T+NSLI+  C
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G  +   ++   + +  +  D  T+ ILI A+ K G I EA  +L  + + G KP   
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +++G   R    +A   F+ M  +G  P+   Y +LI    +     EA     E+
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               L P    ++ + DGL N G+    +K+
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 132/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++E +     V  A E+FN+      +  VL YN L+   C+ K+   A  L + +
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K  VP   +Y  L++  C+SG++   ++ L EM      P V   ++L+  L   G +
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M+K+G   ++ T+N++++  C    V    +++  + K GL  D+  Y +L
Sbjct: 422 LEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVL 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  M+DEA  L   +      P  + Y  +I G+   G+         EM   G 
Sbjct: 482 INGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+   Y +L+    +   F +A +   ++ E G+ P       + D L    K  +AE
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAE 599



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 1/280 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +  A+ V         +  ++ YN+++   C     + A  +  RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  PD   Y +L+N +C +  + EA    +EM  K   P +   + L+ GL N G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              ++++++M   G   D+ T+N L++  CK+   +  + ++  + + G+  D  T   +
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAI 585

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   +  A   L +L+  G  P    Y  +I  + + G F +A    S+M+    
Sbjct: 586 VDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDR 645

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           PP+   + ++I +  +     +A     EM   GL  I +
Sbjct: 646 PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEK 685



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 127/291 (43%), Gaps = 2/291 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+           +++ LL A+  +  +  A +L  ++  KG  P   T+ I
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +        A   L  +   G+ P +   + ++ G    G +  A      ++ QG
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           ++ D  T+ +LI  + K+G+++  + +   + K  +  ++  Y  LI  + K G + +A 
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G       Y  +I G    G++ +     ++M  +   P+   + +LI   
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + GR +EA   L  M++ G  P    ++ + +G   C + ++ E  EL  
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY--CSRENVHEARELFN 324



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A     RM+R    P    +  L+ A    G    A     ++  KG +P +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+    +  +   A  ++  ++K G+  +L TFN++I   C +G +   ++   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   D  TY  LI  +SK G I  A  LL  + +   +P   +Y+ +I G+ + G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA    S++  +G   +   Y  LI  C   GR+ E    L +M    + P    F++
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 303 VTDGLKNCGK 312
           + D L   G+
Sbjct: 271 LIDALCKEGR 280



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 1/167 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  NL     + + +I+     G + +  E+ ++         V+ YN LL A C+ + 
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A +L R+++ +G  PD  T   +V+  C   K++ A++ L+ +   G +P V+   +
Sbjct: 561 FDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTI 619

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           L+  L   G    A  +++KM       D  TF  +I  + +  E +
Sbjct: 620 LINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETD 666


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 144/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I  F K G V  A  +F K         V+  NS++  LC+V+    A A++++M
Sbjct: 123 SYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 182

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +  +P+  TY  L++ + SSG+  EA   L+EMS  G  P V   ++L+  L  +G+ 
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFH 242

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ N MI+ G   D  T+ SL+      G +     +   + + G+ ++  T+ I 
Sbjct: 243 AEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIE 302

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G +DEA      + + G  P    Y  +I G+ + G+ DDA   F +M   G 
Sbjct: 303 IYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 362

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   +T LI      G++ +A     EM + G+ P    F  + D L   GK   A+K
Sbjct: 363 SPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQK 422

Query: 319 I 319
           +
Sbjct: 423 L 423



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 128/293 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G    AV +  + +    +  V+ YN L+  LC+      A  +   M
Sbjct: 193 TYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSM 252

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+ G  PD  TY  L++ + + G + E       M   G         + +      G L
Sbjct: 253 IQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRL 312

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A     KM + GF+ D+ T+ ++I+ +CK G ++  +  +  +   GL  ++ T+  L
Sbjct: 313 DEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTL 372

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   S  G  ++A  L + +++ G  P  +++  +I  +F+ G+  +A   F  M   G 
Sbjct: 373 IHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGA 432

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            PN   Y  +I      G   E    L +M  +GL P +  F+ + DG+ + G
Sbjct: 433 KPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG 485



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 131/273 (47%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           NC   V+ Y++++    +      AY L  +M+  G  P+  T   +++  C    M +A
Sbjct: 116 NCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKA 175

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +  LQ+M D+   P     + L+ G L++G    A +++ +M + G   ++ T+N LI+ 
Sbjct: 176 EAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDC 235

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CKSG      E++ S+ + G   D +TY  L+   +  G + E   +   +V++G +  
Sbjct: 236 LCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSN 295

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              ++  I    + G+ D+A   F +M+  G  P+   YT +I    + GR  +A +   
Sbjct: 296 HHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFC 355

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +M + GL+P    F  +  G    GK + AE++
Sbjct: 356 QMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 111/265 (41%), Gaps = 3/265 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +  LL  LC  K    A  ++ RRM   G  PD  +Y+ L+   C+  K  EA E +  M
Sbjct: 51  FTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMM 110

Query: 114 SDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++ G N  P V     ++ G    G +  A  +  KM+  G   ++ T NS+I+ +CK  
Sbjct: 111 AEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 170

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++    +   +    +  + +TY  LI     +G   EA R+L  +  DG +P    Y 
Sbjct: 171 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYN 230

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + + G   +A   F+ M   G  P+   Y  L+      G  VE  N    M + 
Sbjct: 231 MLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQN 290

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G+      F +       CG+ D A
Sbjct: 291 GMRSNHHTFSIEIYAYCKCGRLDEA 315



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +LM    +  +  T S+ I  + K G +D A   F K         ++ Y +++  LC++
Sbjct: 285 DLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKI 344

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A +   +MI  G  P+  T+  L++ +   GK  +A+E   EM D+G  P V   
Sbjct: 345 GRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIF 404

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++  L   G +  A+++ + M + G   ++ ++N++I     +GEV   +++   +  
Sbjct: 405 TAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLL 464

Query: 186 LGLCADVSTYKILIPAVSKAGM---IDEAFRLLHNLVEDG 222
           +GL     T+  L+  +   G+   +D    L+ +  EDG
Sbjct: 465 IGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDG 504



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 38/262 (14%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSG---------------------------------KM 103
           R   K   PD  T+ IL++  C +G                                 K 
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKK 62

Query: 104 REAQEF---LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLE 158
           R +      L+ M + G  P V     L++GL      E A ++++ M + G     D+ 
Sbjct: 63  RTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVV 122

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           +++++I    K G+V     ++  +   G+  +V T   +I  + K   +D+A  +L  +
Sbjct: 123 SYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 182

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +++   P  + Y  +I G    GQ+ +A     EM   G  PN   Y MLI    + G  
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFH 242

Query: 279 VEAANYLVEMTEMGLTPISRCF 300
            EA      M + G  P +  +
Sbjct: 243 AEAREIFNSMIQSGPKPDATTY 264



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 90/242 (37%), Gaps = 38/242 (15%)

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           K   P +    +L+    +AG L      + ++IK G   D   F  L+ T+C       
Sbjct: 7   KKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKKRTSD 66

Query: 176 CVEMYY-SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAP 232
            + +    + +LG   DV +Y  L+  +      +EA  L+H + EDG    P +  Y+ 
Sbjct: 67  AMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYST 126

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNR------------------------------ 262
           +I G F+ G    A+  F +M   G PPN                               
Sbjct: 127 VIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEH 186

Query: 263 -----PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
                  Y  LI      G++ EA   L EM+  G  P    ++++ D L   G H  A 
Sbjct: 187 IMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAR 246

Query: 318 KI 319
           +I
Sbjct: 247 EI 248


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 135/287 (47%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +   + YN+L+     + +    + L   M+
Sbjct: 120 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAML 179

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 180 ASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 239

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   + + GL  D  TY  LI
Sbjct: 240 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 299

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G++  AF     L+++  +    +Y  +I G+ + G+  DA     EM   G  
Sbjct: 300 DGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLN 359

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 360 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 125/270 (46%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 119 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAM 178

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 179 LASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 238

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+ ++   G KP    Y  +
Sbjct: 239 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTL 298

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G    AF     +  +    +  VYT LI+   + GR V+A   L EM  +GL
Sbjct: 299 IDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGL 358

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+ +  +LL+
Sbjct: 359 NPDTGTYTMIINEF--CKKGDVWKGSKLLK 386



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 118/264 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G++D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 141 DAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 200

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 201 SKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 260

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  +++ M ++G   D  T+ +LI+  CK G +    E    + +
Sbjct: 261 NTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQ 320

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G  P    Y  II    ++G    
Sbjct: 321 ENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWK 380

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 381 GSKLLKEMQRDGHVPSVVTYNVLM 404



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 189 TYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + +MS KG  P       L+ G    G L
Sbjct: 249 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVL 308

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA +   ++I++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 309 VSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMI 368

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 369 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 2/239 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E            P      +++ L+   Y +     
Sbjct: 45  SDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGF 104

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL     +Y  L+    +
Sbjct: 105 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIR 164

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G++DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   
Sbjct: 165 LGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVT 224

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +T LI    + GR   A     +M    L P    ++ +  GL  C K DL +  +L++
Sbjct: 225 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLID 281


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 152/357 (42%), Gaps = 35/357 (9%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM+   +  S  T +++IE +     +  A +V+ +    N +  V +Y S++   C   
Sbjct: 242 LMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAG 301

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS------------ 114
               A AL   MI +G VP+  T+  L++  C +G+M  A+  L+EM             
Sbjct: 302 NVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFN 361

Query: 115 -----------------------DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                                   KGF   V   ++L  GL      E AK+++N M+++
Sbjct: 362 TMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEK 421

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   ++ T  + IE  C+ G +        ++ K G+  ++ TY  LI A SK   + +A
Sbjct: 422 GVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQA 481

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   +VE G  P    Y  +I G     + D+A   F+EM +KG   N   YT +I+ 
Sbjct: 482 HXLKAEMVEKGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISG 541

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
             + GR  EA     EM  MGL P  R F+ +   L     H   ++ E  E+ + +
Sbjct: 542 LSKEGRADEALKLYDEMMRMGLIPDDRVFEALVGSLHKPSSHAALKQNEYGELKINT 598



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 145/316 (45%), Gaps = 2/316 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + +  Q+L+++++   + G V  A E+ N+  A      V  YN+LL A    K   G  
Sbjct: 178 VDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKDREGVD 237

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M R+G V    TY IL+  + SS ++ EA++  +EM ++     V     ++   
Sbjct: 238 EILGLMEREGVVASLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWN 297

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +  A  + ++MI +G V +  TF +LI  +CK+G++E    +   +   G+  +V
Sbjct: 298 CRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNV 357

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             +  ++    K GM+DEAFRL   +   G +     Y  +  G+ +  ++++A    + 
Sbjct: 358 VIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNV 417

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  PN       I +  + G   E   +L  + + G+ P    ++ + D      K
Sbjct: 418 MVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEK 477

Query: 313 HDLAE--KIELLEVSL 326
              A   K E++E  L
Sbjct: 478 VKQAHXLKAEMVEKGL 493


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 35/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G ++ A  ++++  A      V+ YN+++   C     + A  + + M
Sbjct: 251 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 310

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF P+  T+ IL++ +   G +  A      M D    P      ++++GL  AG  
Sbjct: 311 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 370

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + + NK + QGFV     +N++I+   K G +     +Y  +C++G+     TY  L
Sbjct: 371 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 430

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ID A +LL+++   G K     Y  +I G  +R     A    +E++  G 
Sbjct: 431 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 490

Query: 259 PPNRPVYTMLIT-----------------MCGRG------------------GRFVEAAN 283
            PNR +Y  +IT                 M   G                  GR + A++
Sbjct: 491 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 550

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              EM   G+ P  R   ++ +GL N G+ + A KI
Sbjct: 551 IHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKI 586



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+  +  TL +II+   K G      ++FNK  +       + YN+++    +   
Sbjct: 345 MKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGN 404

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  + R M   G  P   TY  L++ +C    +  A + L +M  KG    ++    
Sbjct: 405 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 464

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      ++SA +++N++   G   +   +NS+I        VE  +++Y  +   G
Sbjct: 465 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 524

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY  LI  + K+G +  A  +   ++  G  P    +  +I G+  +GQF++A 
Sbjct: 525 IPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENAR 584

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               +M  K   P+  +Y  LI    + G   EA     EM + GL P +  +D++ +G
Sbjct: 585 KILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 643



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 108/263 (41%), Gaps = 36/263 (13%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+ F K G ++ A  V+ +          + Y SL+   C+      A  L+  M RKG
Sbjct: 395 IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKG 454

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              D + Y  L++ +C    M+ A E L E+   G +P     + ++ G  N   +E A 
Sbjct: 455 LKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAI 514

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY--------------YSVCKLGL 188
            +  KM+ +G   DL+T+ SLI+ + KSG + +  +++              ++V   GL
Sbjct: 515 DLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGL 574

Query: 189 C---------------------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C                       V  Y  LI    K G + EAFRL   +++ G  P  
Sbjct: 575 CNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDN 634

Query: 228 SLYAPIIKGMFR-RGQFDDAFCF 249
             Y  ++ G F+  G F     F
Sbjct: 635 ITYDILVNGKFKGDGNFSRDLTF 657



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 1/236 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L+R M   G++P + T+  ++ A    G + EA     +M + G +  +     L++
Sbjct: 94  ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMK 153

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G L SA  +VN++ + G V +  T++ LI+  CK+G +E   E Y  +   G+ +
Sbjct: 154 GYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS 213

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V +   ++    K      AF + ++ +E G     + +  ++  + + G+ ++A   +
Sbjct: 214 SVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFT-FNTLLSWLCKEGKMNEACNLW 272

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            E+  KG  PN   Y  +I    R      A     EM + G TP +  F ++ DG
Sbjct: 273 DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDG 328



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  MK   L +  +    +I+ F K   + +A E+ N+           +YNS++   
Sbjct: 445 KLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGF 504

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +     A  L ++M+ +G   D +TY  L++    SG++  A +   EM  KG  P  
Sbjct: 505 KNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDD 564

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R   +L+ GL N G  E+A++++  M  +  +  +  +N+LI    K G ++    ++  
Sbjct: 565 RAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDE 624

Query: 183 VCKLGLCADVSTYKILI 199
           +   GL  D  TY IL+
Sbjct: 625 MLDRGLVPDNITYDILV 641



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 91/227 (40%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            P  +   IL+ A        EA+E   +M   G         ++++  L  G +  A+Q
Sbjct: 2   TPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQ 61

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
              +   +G  LD E ++  +  +C      + + +   +   G      T+  +I A  
Sbjct: 62  HFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACV 121

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G + EA RL  ++V  G     ++   ++KG   +G    A    +E+   G  PN+ 
Sbjct: 122 KEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKV 181

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            Y++LI  C + G   +A  +  EM   G+       + + +G   C
Sbjct: 182 TYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKC 228


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 3/307 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  +S   +I  F + G V  A  +F++         V+ Y+S + ALC+ +    A  
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++R+MI  GF PDK TY  +++ +   G+ +E     +EM+ +G  P +   +  +  L 
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLC 343

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A +  + M  +G   DL T++ L+      G V   + ++ S+   G+ AD S
Sbjct: 344 KHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHS 403

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y ILI A  K GM+DEA  +   + E G  P    Y  +I    R G+  DA   F++M
Sbjct: 404 VYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQM 463

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL-TPISRCFDLVTDGLKNCGK 312
              G  P+  VY  LI      G  V+A   + EM   G+  P +  F+ + + L   G+
Sbjct: 464 IAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGR 523

Query: 313 HDLAEKI 319
              A+ I
Sbjct: 524 VVEAQDI 530



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 148/315 (46%), Gaps = 6/315 (1%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCT--AFNCQQCVLLYNSLLFALCEVKLF 68
           L V P T+S   +++   +      A+++ +     +  C   V+ YN+++         
Sbjct: 184 LGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEV 243

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  L   M+++G VPD  TY+  ++A C +  M +A+  L++M   GF P     + +
Sbjct: 244 SKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCM 303

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G  +    M  +M ++G + D+ T NS + ++CK G+ +   E + S+   G 
Sbjct: 304 IHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGH 363

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D+ TY +L+   +  G + +   L +++  +G     S+Y  +I    +RG  D+A  
Sbjct: 364 KPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAML 423

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F++M+ +G  P+   Y  +I    R GR  +A +   +M  MGL P +  ++ +  G  
Sbjct: 424 IFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGF- 482

Query: 309 NCGKHDLAEKIELLE 323
            C   +L +  EL+ 
Sbjct: 483 -CMHGNLVKAKELIS 496



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++  +   G V + + +FN            +YN L+ A  +  +   A  +  +M
Sbjct: 369 TYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQM 428

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +PD  TY  ++ A+   G++ +A +   +M   G  P     + L+QG    G L
Sbjct: 429 QERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNL 488

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             AK+++++M+ +G    +   FNS+I ++CK G V    +++  V  +G   DV T+  
Sbjct: 489 VKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNS 548

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI      G +++AF +L  ++  G +P    Y+ ++ G  R G+ DD    F EM  KG
Sbjct: 549 LIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKG 608

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT-PISRCFDLVTDGL--KNCGKHD 314
             P    Y +++      GR V A     EM E G T  IS C  ++  GL   NC    
Sbjct: 609 VKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTC-GIILGGLCRNNCDDEA 667

Query: 315 LA 316
           +A
Sbjct: 668 IA 669



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S  I+   K   +D A  V  +  +   +   + YN ++     +  +     + R M
Sbjct: 264 TYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREM 323

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G +PD  T    +++ C  GK +EA EF   M+ KG  P +    +L+ G    GY+
Sbjct: 324 TRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYV 383

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + N M   G V D   +N LI+   K G ++  + ++  + + G+  D  TY  +
Sbjct: 384 VDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTV 443

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A S+ G + +A    + ++  G KP   +Y  +I+G    G    A    SEM  +G 
Sbjct: 444 IAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGI 503

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           P PN   +  +I    + GR VEA +    +  +G  P    F+ + DG    GK + A
Sbjct: 504 PRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKA 562



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 124/263 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G V  A ++F+       +  V+ +NSL+     V     A+ ++  MI  G
Sbjct: 514 IINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVG 573

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L++ +C +G++ +     +EM  KG  P      +++ GL N G    AK
Sbjct: 574 IEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAK 633

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +M ++MI+ G  +D+ T   ++  +C++   +  + ++  +  + +  +++    +I A+
Sbjct: 634 KMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAM 693

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    +EA  L  ++   G  P  S Y  +I  + + G  ++A   FS M+  G  P+ 
Sbjct: 694 YKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSS 753

Query: 263 PVYTMLITMCGRGGRFVEAANYL 285
            +   +I +    G   +A NYL
Sbjct: 754 RLLNNIIRVLLEKGEISKAGNYL 776



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 138/309 (44%), Gaps = 2/309 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I  F + G + +A++ FN+  A   +   ++YNSL+   C       A  LI  M
Sbjct: 439 TYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEM 498

Query: 79  IRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + +G   P+   +  ++N+ C  G++ EAQ+    +   G  P V   + L+ G    G 
Sbjct: 499 MSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGK 558

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  +++ MI  G   D+ T+++L++  C++G ++  + ++  +   G+     TY I
Sbjct: 559 MEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGI 618

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  +   G    A ++ H ++E G     S    I+ G+ R    D+A   F ++    
Sbjct: 619 ILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLA 316
              N  +   +I    +  +  EA      ++  GL P +  +  ++T+ LK     +  
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEAD 738

Query: 317 EKIELLEVS 325
               L+E S
Sbjct: 739 NMFSLMEKS 747



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 122/272 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +G  G ++ A  V +   +   +  V+ Y++LL   C          L R M
Sbjct: 545 TFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREM 604

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY I+++   + G+   A++   EM + G    +    +++ GL      
Sbjct: 605 LSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCD 664

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  K+       ++   N++I+ + K  + E   E++ S+   GL  + STY ++
Sbjct: 665 DEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVM 724

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G ++EA  +   + + G  P   L   II+ +  +G+   A  + S++  K  
Sbjct: 725 ITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTI 784

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
                  ++++++  R G++ E    L  M +
Sbjct: 785 SLEASTASLMLSLFSRKGKYREQIKSLPAMYQ 816



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 120/277 (43%), Gaps = 13/277 (4%)

Query: 36  AVEVFNKCTAFNCQQCVLL-----YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           AV +FN+      +  V L     YN L+   C        +AL  R ++ G   D    
Sbjct: 98  AVALFNRICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVA 157

Query: 91  AILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            IL+   C + +  +A    L  M + G  P       +++ L      + A  +++ M+
Sbjct: 158 NILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMV 217

Query: 150 KQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           K+  G   ++ ++N++I    + GEV     +++ + + G+  DV TY   I A+ KA  
Sbjct: 218 KKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARA 277

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +D+A  +L  ++ +G +P    Y  +I G    GQ+ +    F EM  +G  P+      
Sbjct: 278 MDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNS 337

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            ++   + G+  EAA +   M   G  P     DLVT
Sbjct: 338 YMSSLCKHGKSKEAAEFFDSMAAKGHKP-----DLVT 369



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 3/162 (1%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR-LLHN 217
           T+N L++  C++        ++    K GL  DV    IL+  +  A   D+A   LLH 
Sbjct: 121 TYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHR 180

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM--KIKGHPPNRPVYTMLITMCGRG 275
           + E G +P    Y+ ++K +    +   A      M  K  G  PN   Y  +I    R 
Sbjct: 181 MPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFRE 240

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           G   +A N   EM + G+ P    +    D L      D AE
Sbjct: 241 GEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAE 282


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 144/311 (46%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I    + G +D A  +  + +       V  Y +L+  LC V     A  +  +M
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+   + IL++A C  G      E  +EM ++G  P     + +V GL  A  L
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA  +V +M   G   D  T+ +LI+  CK  E++  +E+  ++   G+  D  TY  L
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SKAG   +A R+L  ++E G +P  + Y  +I    R+G          EM+ KG 
Sbjct: 457 ISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGR 516

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    Y +++    + G+   A   L  M  +G++P    ++++ DG  +C KH     
Sbjct: 517 KPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDG--HC-KHGKVTD 573

Query: 319 IELLEVSLRSV 329
           IE L+ +  +V
Sbjct: 574 IEELKSAKGTV 584



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 133/292 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++ +  + G + +A  VF++  +   ++ V+ +N+++  +C      GA  L RRM  
Sbjct: 244 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSE 303

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD  TY  L+   C  G++ +A+   ++M  +G  P      +L+      G  E+
Sbjct: 304 AGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAET 363

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
             ++  +M ++G   D  T+N+++  +C++ +++    +   +   GL  D  TY  LI 
Sbjct: 364 MLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLID 423

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K   +D A  +  N+V +G       Y  +I G+ + G+  DA     EM   G  P
Sbjct: 424 GYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEP 483

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +   YTM+I    R G        L EM   G  P    ++++ +G    G+
Sbjct: 484 DNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L+N L+  L  +     A  +   M  +G      ++  +++  C +G +  A+   + M
Sbjct: 242 LFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRM 301

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+ G  P V     L+QGL   G +E A+ +  KM  +G   +   F  LI+  CK G+ 
Sbjct: 302 SEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDA 361

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E  +E++  + + G+  D  TY  ++  + +A  +  A  ++  +   G +P    Y  +
Sbjct: 362 ETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTL 421

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  +  + D A      M  +G   +   YT LI+   + GR  +A   L EM E GL
Sbjct: 422 IDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGL 481

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + +V D    C K D+   + LL+
Sbjct: 482 EPDNTTYTMVIDAF--CRKGDVKTGLRLLK 509



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 106/216 (49%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA  F  ++ D G  P  +  ++L++ L+  G L SA+ + ++M  +G    + +FN++I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +C++G+++    ++  + + G+  DV TY  LI  + + G I++A  +   +   G K
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P   ++  +I    ++G  +       EM+ +G  P+   Y  ++    R      A+  
Sbjct: 343 PNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGI 402

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           +VEM   GL P +  +  + DG     + D+A +I+
Sbjct: 403 VVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIK 438



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 3/197 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I+ + K   +D A+E+     A       + Y +L+  L +   
Sbjct: 406 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M+  G  PD  TY ++++A+C  G ++     L+EM +KG  P V   ++
Sbjct: 466 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 525

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G +++A  ++N MI  G   D  T+N L++  CK G+V    E+  +    G
Sbjct: 526 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEELKSAK---G 582

Query: 188 LCADVSTYKILIPAVSK 204
              D+  Y  ++  + K
Sbjct: 583 TVPDLGVYTSIVGEIVK 599


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 35/330 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +  ++++ +  + G + +A  VF++      Q  V+ +N+L+  +C+    + A AL   
Sbjct: 115 RQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGL 174

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP----------------- 120
           M + G  PD  TY   +   C +G++++A E  +EM ++G NP                 
Sbjct: 175 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 234

Query: 121 -----------PVRG--RDL-----LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
                        RG   DL     LV G      +++A  +V +M K G   D  T+ +
Sbjct: 235 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 294

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           LI+  CK GE++  +EM   +   G+  D  TY  LI  +SKAG   +A R+L  ++E G
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 354

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P  + Y  +I    + G     F    EM+ KG  P    Y +++      G+   A 
Sbjct: 355 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNAD 414

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             L  M  +G+ P    ++++ DG    GK
Sbjct: 415 MLLNAMLNIGVCPNDITYNILLDGHCKHGK 444



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 2/259 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AYA    ++  G  P+ R + +L+     SGK+  A+    EM  +G  P V   + L+ 
Sbjct: 98  AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 157

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  A  L +A  +   M K G   D+ T+ + I+ +CK+G ++  +EM+  +C+ GL  
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +      LI A  K G +     L   +   G K     Y  ++ G  R      A    
Sbjct: 218 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIV 277

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  P++  YT LI  C + G    A     EM++ G+      +  +  GL   
Sbjct: 278 EEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 337

Query: 311 GKHDLAEKI--ELLEVSLR 327
           G+   AE+I  E++E  L+
Sbjct: 338 GRSVDAERILCEMMEAGLQ 356



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 7/259 (2%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T  L+ +I+   K G V   +E+  +      +  ++ YN+L+   C V+    A 
Sbjct: 215 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAN 274

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M + G  PDK TY  L++  C  G++  A E  QEMSD+G          L+ GL
Sbjct: 275 DIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGL 334

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG    A++++ +M++ G   D  T+  +I+  CK+G+V+   +    +   G    +
Sbjct: 335 SKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGI 394

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY +++      G +  A  LL+ ++  G  P    Y  ++ G  + G+  D      E
Sbjct: 395 VTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDT----EE 450

Query: 253 MK-IKGHPPNRPVYTMLIT 270
           +K  KG   +  VYT LI 
Sbjct: 451 LKSAKGMVSDFGVYTSLIN 469



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L     T + +I+   K G +D A+E+  + +        + Y +L+  L +
Sbjct: 277 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M+  G  PD  TY ++++A+C +G ++   + L+EM +KG NP +  
Sbjct: 337 AGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 396

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ G  + G +++A  ++N M+  G   +  T+N L++  CK G+V    E+  +  
Sbjct: 397 YNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAK- 455

Query: 185 KLGLCADVSTYKILI 199
             G+ +D   Y  LI
Sbjct: 456 --GMVSDFGVYTSLI 468


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 161/349 (46%), Gaps = 38/349 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M  Y  +      S ++  F + G VD+A+E+ N      C+   + YN+ L  L
Sbjct: 268 QLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIELLN---GMLCKPNTICYNAALKGL 324

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +     LI  M+RK  +P++ T+++L +  C +G +  A E L++M   G  P  
Sbjct: 325 CIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDA 384

Query: 123 ------------RGR--------------------DLLVQGLLNAGYLESAKQMVNKMIK 150
                       +GR                    +  ++GL  A   + A++++ +M++
Sbjct: 385 VIYNTLIYSFSEQGRVDDALKLLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLR 444

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +   L   TFN LI+++C++G V   +E++  + K G   D+ TY  LI  +S+ G+++ 
Sbjct: 445 EDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVES 504

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L  ++     KP    Y  ++KG+ R  +++DA    S M  K  PPN   + +LI 
Sbjct: 505 AIELFQSM---PCKPDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILIN 561

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + G    A     +M + G TP    ++ + +G    G+ D A ++
Sbjct: 562 SLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRL 610



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  Y         + +I  F + G VD+A+++ N   +  C   V+ +N+ L  L
Sbjct: 370 EVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLN---SMPCSPDVISFNAALKGL 426

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +  A  LI +M+R+     + T+ IL+++ C +G++  A E  ++M   G  P +
Sbjct: 427 CRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDI 486

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL   G +ESA ++   M  +    D+  +N++++ +C++   E   E+  +
Sbjct: 487 VTYSSLINGLSEQGLVESAIELFQSMPCKP---DIFGYNAVLKGLCRAARWEDAGELISN 543

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +     +  T+ ILI ++ + G++D A  +   + + G  P    Y  +I G   +G+
Sbjct: 544 MARKDCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGR 603

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            DDA    S M  K   P+   Y   +    R  R+ EA   + EM  M   P
Sbjct: 604 LDDARRLLSTMSCK---PDAVSYNSALKGLCRAERWKEAEEVVAEMLRMKCPP 653



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%), Gaps = 37/301 (12%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L  LC  + +  A AL+  M+R    P++ T+A  + A+C +G +  A + L  M 
Sbjct: 215 YNTVLMGLCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMP 274

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN---------------------------- 146
             G  P V     LV G    G ++ A +++N                            
Sbjct: 275 QYGCTPDVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICYNAALKGLCIAQRWEDVG 334

Query: 147 ----KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
               +M+++  + +  TF+ L   +C++G V+  +E+   + K G   D   Y  LI + 
Sbjct: 335 QLIVEMVRKDCLPNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSF 394

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           S+ G +D+A +LL+++      P    +   +KG+ R  ++DDA     +M  +  P   
Sbjct: 395 SEQGRVDDALKLLNSM---PCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIE 451

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + +LI    + GR   A     +M + G TP    +  + +GL   G  + A  IEL 
Sbjct: 452 MTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESA--IELF 509

Query: 323 E 323
           +
Sbjct: 510 Q 510



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 105/231 (45%), Gaps = 6/231 (2%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+N +C SG++ +A   +  M      P     + ++ GL  A   E A+ ++ +M
Sbjct: 182 TYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALMAEM 238

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++     +  TF + I   C++G ++  V++   + + G   DV  Y  L+   S+ G +
Sbjct: 239 VRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRV 298

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+A  LL+ ++    KP    Y   +KG+    +++D      EM  K   PN   ++ML
Sbjct: 299 DDAIELLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSML 355

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +   + G    A   L +M + G  P +  ++ +       G+ D A K+
Sbjct: 356 TSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 142/318 (44%), Gaps = 2/318 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   +    Q  S  I   G     + AVE+     A      VL Y+S + A  +
Sbjct: 174 LDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSSAIAACAK 233

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V  +  A  L+R M  +G  P+   Y+  ++A    G+   A + L+EM   G  P V  
Sbjct: 234 VSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVIT 293

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++      G  E A +++ +M  +G V ++ T++ +I    K G+ E  V +   + 
Sbjct: 294 YSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQ 353

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  DV TY   I A +K G  +EA  LL  +  +G  P    Y  +I    +RG++ 
Sbjct: 354 ENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWR 413

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM+  G PP+   Y+  I  C +  R+ +A   L EM   GLTP    ++   
Sbjct: 414 EAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAI 473

Query: 305 DGLKNCGKHDLAEKIELL 322
           D     G+  +A  +ELL
Sbjct: 474 DACAKTGRSKIA--VELL 489



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 8/326 (2%)

Query: 2   WKT-IELMKPY-NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+T ++L+K    + ++P   T S +I+   K G  + A  +  +         ++ Y+ 
Sbjct: 272 WETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSI 331

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++ A  +   +  A AL+R M   G  PD  TY+  ++A    G+  EA   L+EM  +G
Sbjct: 332 VIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEG 391

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P      +++      G    A  ++ +M   G   D+  +++ I+   ++   E  +
Sbjct: 392 VTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQAL 451

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   +   GL  +V +Y   I A +K G    A  LL  +   G  P    Y+ +I   
Sbjct: 452 WLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASC 511

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
               Q+++A   F EM+ +G  P+       I  C +GG + EA + L EM  MGL P +
Sbjct: 512 AMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDA 571

Query: 298 RCFDLVTDGLKNCGKHD-LAEKIELL 322
             +    D    C K D   E I+LL
Sbjct: 572 ISYRTAIDA---CAKGDRWKEIIDLL 594



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 126/295 (42%), Gaps = 2/295 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S  I+   +    + A+ +  +  A      V+ YNS + A  +      A  L+R M  
Sbjct: 435 SAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPA 494

Query: 81  KGFVPDKRTYAILVNAWCSSGKM-REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            G  PD  TY+ ++ + C+ G+   EA +  +EM  +G  P V   +  +      G+ E
Sbjct: 495 HGLAPDVITYSAVIAS-CAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWE 553

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +M   G V D  ++ + I+   K    +  +++   +  +GL  D  +Y+  +
Sbjct: 554 EALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAM 613

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A S  G+  EA  LL +++  G  P    Y   I    + G++ +A     +M   G  
Sbjct: 614 SACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLA 673

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           P+   +   I  CG G ++  A   L EM  +G++P    +       K CG+ D
Sbjct: 674 PDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKD 728



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 5/302 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P  +S  ++I    K G    A+++  +  A      V+ Y++ + A  +   +  A 
Sbjct: 392 VTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQAL 451

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+R M   G  P+  +Y   ++A   +G+ + A E L+EM   G  P V     ++   
Sbjct: 452 WLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASC 511

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                 E A  +  +M +QG   D+ + N+ I    + G  E  +++   +  +GL  D 
Sbjct: 512 AMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDA 571

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            +Y+  I A +K     E   LL  +   G  P    Y   +      G + +A     +
Sbjct: 572 ISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRD 631

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M   G  P+   Y   I  C +GGR+ EA   L +M   GL P    F+   D    CG 
Sbjct: 632 MLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDA---CGN 688

Query: 313 HD 314
            D
Sbjct: 689 GD 690



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 2/256 (0%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  ++ RM  +G  PD + Y+  + A  ++ +   A E L  M+ +G  P V     
Sbjct: 167 WRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYSS 226

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +         + A  ++  M  QG   ++  +++ I    K G+ E  V++   +  +G
Sbjct: 227 AIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVG 286

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  DV TY  +I A +K G  + AFRLL  +   G       Y+ +I    + GQ+++A 
Sbjct: 287 LAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAV 346

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM+  G  P+   Y+  I+ C + G++ EA   L EM   G+TP +  + +V    
Sbjct: 347 ALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISAC 406

Query: 308 KNCGKHDLAEKIELLE 323
              G+    E I+LL+
Sbjct: 407 AKRGR--WREAIDLLQ 420



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 129/331 (38%), Gaps = 42/331 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K G  + AV +  +         V+ Y+S + A  +   +  A  L+R M
Sbjct: 328 TYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREM 387

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  +Y I+++A    G+ REA + LQEM   G  P V      +     A   
Sbjct: 388 PMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRW 447

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M   G   ++ ++NS I+   K+G  +  VE+   +   GL  DV TY  +
Sbjct: 448 EQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAV 507

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I + +     +EA  L   +   G  P        I    + G +++A     EM   G 
Sbjct: 508 IASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGL 567

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMT----------------------------- 289
            P+   Y   I  C +G R+ E  + L EM+                             
Sbjct: 568 VPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALV 627

Query: 290 ------EMGLTPISRCFDLVT--DGLKNCGK 312
                  +GL+P     D+VT    +  C K
Sbjct: 628 LLRDMLAVGLSP-----DVVTYNSAINACAK 653



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 116/275 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S  I    K G  + AV++  +  A      V+ Y++++ A  +   +  A+ L+  M  
Sbjct: 260 SAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPT 319

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG V +  TY+I++ A    G+  EA   L+EM + G  P V      +      G  E 
Sbjct: 320 KGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEE 379

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +M  +G   +  ++  +I    K G     +++   +   G+  DV  Y   I 
Sbjct: 380 AVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAID 439

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A ++A   ++A  LL  +   G  P    Y   I    + G+   A     EM   G  P
Sbjct: 440 ACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAP 499

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +   Y+ +I  C  G ++ EA +   EM   G+TP
Sbjct: 500 DVITYSAVIASCAMGRQWEEALDLFREMQRQGITP 534



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 88/195 (45%)

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           G  R+A + L  M ++G  P  +     +    NA   E A +++  M  +G   D+ T+
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +S I    K    +  V +  S+   G+  +V  Y   I A  K G  + A  LL  +  
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y+ +I    +RGQ++ AF    EM  KG   N   Y+++I  C + G++ E
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEE 344

Query: 281 AANYLVEMTEMGLTP 295
           A   L EM E G+ P
Sbjct: 345 AVALLREMQENGVAP 359



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 2/187 (1%)

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G    A  ++++M +QG   D + ++S I     + + E  VE+  S+   G   DV TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
              I A +K     EA  LL ++   G KP   +Y+  I    + GQ++ A     EM  
Sbjct: 225 SSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPA 284

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y+ +I  C + G++  A   L+EM   G+      + +V       G+ + 
Sbjct: 285 VGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWE- 343

Query: 316 AEKIELL 322
            E + LL
Sbjct: 344 -EAVALL 349



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 91/238 (38%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + L+    T S +I         + A+++F +         V+  N+ + A  +   
Sbjct: 492 MPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGW 551

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  ++  M   G VPD  +Y   ++A     + +E  + L+EMS  G  P       
Sbjct: 552 WEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRF 611

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +      G  + A  ++  M+  G   D+ T+NS I    K G  +    +   +   G
Sbjct: 612 AMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFG 671

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           L  DV+++   I A         A  +L  +   G  P  + Y   +    R G+ DD
Sbjct: 672 LAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEKDD 729



 Score = 45.4 bits (106), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           +S  K  +    + G   +A  +L  + E G KP    Y+  I       Q++ A    +
Sbjct: 151 MSHLKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLA 210

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  +G PP+   Y+  I  C +  R+ EA   L  M   G+ P    +       +  G
Sbjct: 211 SMAARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGG 270

Query: 312 KHDLAEKIELLE 323
           + + A  ++LL+
Sbjct: 271 QWETA--VDLLK 280


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 135/289 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G   NA+ V ++     C   V+ Y  LL A C+   +  A  L+  M
Sbjct: 34  TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 93

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P     +++++GL  A   
Sbjct: 94  RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 153

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++ +M ++G   ++ TFN LI  +C+ G VE  +E+   + K G   +  +Y  L
Sbjct: 154 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 213

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A  K   +D+A   L  +V  G  P    Y  ++  + R G+ D A     ++K KG 
Sbjct: 214 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 273

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P    Y  +I    + G+  EA   L EM   GL P    +  +  GL
Sbjct: 274 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 322



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 145/305 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    + G VD+A+E      ++ C+   + YN +L  L
Sbjct: 88  KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +  A  L+  M +KG  P+  T+ +L++  C  G +  A E L+++   G  P  
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 207

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+        ++ A   ++ M+ +G   D+ ++N+L+  +C+SGEV+  VE+ + 
Sbjct: 208 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 267

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + +Y  +I  ++KAG   EA  LL+ +V  G +P    Y+ I  G+ R  +
Sbjct: 268 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 327

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +DA   F +++  G  PN  +Y  +I    +      A +    M   G  P    + +
Sbjct: 328 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 387

Query: 303 VTDGL 307
           + +GL
Sbjct: 388 LIEGL 392



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  LC       A A++  M+R+  VPD  TY IL+ A C     ++A + L EM 
Sbjct: 35  YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 94

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           DKG  P +   +++V G+   G ++ A + +  +   G   +  ++N +++ +C +   E
Sbjct: 95  DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 154

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + + G   +V T+ +LI  + + G+++ A  +L  + + G  P    Y P++
Sbjct: 155 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 214

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               ++ + D A  F   M  +G  P+   Y  L+T   R G    A   L ++ + G  
Sbjct: 215 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCA 274

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
           P+   ++ V DGL   GK    E +ELL
Sbjct: 275 PVLISYNTVIDGLTKAGKT--KEALELL 300



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 116/235 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV  +   + C    L YN LL A C+ K    A A +  M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C SG++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M+ +G   D+ T++++   +C+   +E  +  +  V  +G+  +   Y  +
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 353

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           I  + K      A  L   ++ +G  P  S Y  +I+G+   G   +A     E+
Sbjct: 354 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     ++  F K   +D A+   +   +  C   ++ YN+LL ALC      
Sbjct: 205 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 259

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   +Y  +++    +GK +EA E L EM  KG  P +     + 
Sbjct: 260 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 319

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL     +E A +   K+   G   +   +N++I  +CK  E    ++++  +   G  
Sbjct: 320 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 379

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            + STY ILI  ++  G+I EA  LL  L
Sbjct: 380 PNESTYTILIEGLAYEGLIKEARDLLDEL 408



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 49/99 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I     +   +++A+  F K      +   +LYN+++  LC+ +  H A  L   M
Sbjct: 314 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYM 373

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           I  G +P++ TY IL+      G ++EA++ L E+  + 
Sbjct: 374 IGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRA 412


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         +  YNS++   C    +  A  L++ M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  TY  L+NA+   GK  EA+E   EM  +G  P       ++ G      L++
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ M   M  +G   +L TFN+LI+  C +  ++  +E+ + + + GL AD +TY  LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---- 256
                G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+      
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 257 --GHP-----PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              HP     P+   Y +LI+     G+F+EA     EM   G+ P +  +  + DGL  
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL-- 556

Query: 310 CGKHDLAEKIELLE 323
           C +  L E  ++ +
Sbjct: 557 CKQSRLDEATQMFD 570



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 136/327 (41%), Gaps = 13/327 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  +  T S +I+ F K   +D A  +F       C   ++ +N+L+   C  K 
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M   G V D  TY  L++ +   G +  A + LQEM   G  P +   D 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFC 176
           L+ GL + G L+ A +M   M K            G   D++T+N LI  +   G+    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   G+  D  TY  +I  + K   +DEA ++  ++      P    +  +I G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             + G+ DD    F EM  +G   N   Y  LI    + G    A +   EM   G+ P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +     +  GL +  K +L   + +LE
Sbjct: 651 TITIRNMLTGLWS--KEELKRAVAMLE 675



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 15/326 (4%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W   E  L +     +SP   T + +I  F K G    A E++++          + Y+S
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++   C+      A  +   M  KG  P+  T+  L++ +C + ++ +  E L EM++ G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   + L+ G    G L +A  ++ +MI  G   D+ T ++L++ +C +G+++  +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 178 EMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           EM+  + K            G+  DV TY ILI  +   G   EA  L   +   G  P 
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+ ++ + D+A   F  M  K   PN   +T LI    + GR  +      
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G+   +  +  +  G +  G 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGN 631



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G +  AV + ++      Q   + Y +++  +C+      A  L+R+M
Sbjct: 186 TFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245

Query: 79  IR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 +P+   Y+ ++++ C  G+  +AQ    EM +KG  P +   + ++ G  ++G 
Sbjct: 246 EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR 305

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A+Q++ +M+++    D+ T+N+LI    K G+     E+Y  +   G+  +  TY  
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K   +D A  + + +   G  P    +  +I G     + DD      EM   G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   Y  LI      G    A + L EM   GL P     D + DGL + GK  L +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK--LKD 483

Query: 318 KIELLEVSLRS 328
            +E+ +V  +S
Sbjct: 484 ALEMFKVMQKS 494



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A  +   F  A  L   M+ +G +P+  TY+ +++ +C   ++  A+    
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ KG +P +   + L+ G   A  ++   +++++M + G V D  T+N+LI      G
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA---FRLLHNLVED------- 221
           ++   +++   +   GLC D+ T   L+  +   G + +A   F+++    +D       
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 222 -GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G +P    Y  +I G+   G+F +A   + EM  +G  P+   Y+ +I    +  R  E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           A      M     +P    F  + +G    G+ D
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 11/275 (4%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     S +  T + +I+ +     +D+ +E+ ++ T          YN+L+     V 
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------- 115
             + A  L++ MI  G  PD  T   L++  C +GK+++A E  + M             
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T++S+I+ +CK   ++ 
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +M+ S+       +V T+  LI    KAG +D+   L   +   G       Y  +I 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           G  + G  + A   F EM   G  P+      ++T
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 659



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 125/288 (43%), Gaps = 3/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+  F K T       V+ + +LL  LC       A     +M      P+  T+  L+N
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMN 192

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++ EA   L  M + G  P       +V G+   G   SA  ++ KM +   ++
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            ++  ++++I+++CK G       ++  + + G+  D+ TY  +I     +G   +A +L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  ++E    P    Y  +I    + G+F +A   + EM  +G  PN   Y+ +I    +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             R   A +    M   G +P    F+ + DG   CG   + + +ELL
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY--CGAKRIDDGMELL 418



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 11/260 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L     T + +I  F   G ++ A+++  +  +      ++  ++LL  LC+   
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 68  FHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              A  + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       ++ GL     L+ A QM + M  + F  ++ TF +LI   CK+G V+  
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E++  + + G+ A+  TY  LI    K G I+ A  +   ++  G  P       ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 237 MFRRGQFDDAFCFFSEMKIK 256
           ++ + +   A     ++++ 
Sbjct: 661 LWSKEELKRAVAMLEKLQMS 680



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 1/248 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L ++M RK    D  ++ IL+  +CS  K+  A     +++  G +P V     L+ GL
Sbjct: 100 SLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGL 159

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A    ++M +     ++ TF +L+  +C+ G +   V +   + + GL    
Sbjct: 160 CVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            TY  ++  + K G    A  LL  + E  H  P   +Y+ II  + + G+  DA   F+
Sbjct: 220 ITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFT 279

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  P+   Y  +I      GR+ +A   L EM E  ++P    ++ + +     G
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 312 KHDLAEKI 319
           K   AE++
Sbjct: 340 KFFEAEEL 347



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 3/220 (1%)

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQ-GLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           R  ++ L + S +       G  L +Q G      LE A  + + M++   +  +  F  
Sbjct: 25  RSIRDTLAKASGESCEAGFGGESLKLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCK 84

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           L+  + +    +  + +Y  + +  +  D+ ++ ILI        +  A      + + G
Sbjct: 85  LMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLG 144

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    +  ++ G+    +  +A  FF +M      PN   +T L+    R GR VEA 
Sbjct: 145 LHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAV 204

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             L  M E GL P    +  + DG+  C K D    + LL
Sbjct: 205 ALLDRMMEDGLQPTQITYGTIVDGM--CKKGDTVSALNLL 242


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         +  YNS++   C    +  A  L++ M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  TY  L+NA+   GK  EA+E   EM  +G  P       ++ G      L++
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ M   M  +G   +L TFN+LI+  C +  ++  +E+ + + + GL AD +TY  LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---- 256
                G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+      
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 257 --GHP-----PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              HP     P+   Y +LI+     G+F+EA     EM   G+ P +  +  + DGL  
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL-- 556

Query: 310 CGKHDLAEKIELLE 323
           C +  L E  ++ +
Sbjct: 557 CKQSRLDEATQMFD 570



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 136/327 (41%), Gaps = 13/327 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  +  T S +I+ F K   +D A  +F       C   ++ +N+L+   C  K 
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M   G V D  TY  L++ +   G +  A + LQEM   G  P +   D 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFC 176
           L+ GL + G L+ A +M   M K            G   D++T+N LI  +   G+    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   G+  D  TY  +I  + K   +DEA ++  ++      P    +  +I G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             + G+ DD    F EM  +G   N   Y  LI    + G    A +   EM   G+ P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +     +  GL +  K +L   + +LE
Sbjct: 651 TITIRNMLTGLWS--KEELKRAVAMLE 675



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 15/326 (4%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W   E  L +     +SP   T + +I  F K G    A E++++          + Y+S
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++   C+      A  +   M  KG  P+  T+  L++ +C + ++ +  E L EM++ G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   + L+ G    G L +A  ++ +MI  G   D+ T ++L++ +C +G+++  +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 178 EMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           EM+  + K            G+  DV TY ILI  +   G   EA  L   +   G  P 
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+ ++ + D+A   F  M  K   PN   +T LI    + GR  +      
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G+   +  +  +  G +  G 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGN 631



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 3/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+  F K T       V+ +N+LL  LC       A  L  +M      P+  T+  L+N
Sbjct: 133 ALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++ EA   L  M + G  P       +V G+   G   SA  ++ KM +   ++
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            ++  ++++I+++CK G       ++  + + G+  D+ TY  +I     +G   +A +L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  ++E    P    Y  +I    + G+F +A   + EM  +G  PN   Y+ +I    +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             R   A +    M   G +P    F+ + DG   CG   + + +ELL
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY--CGAKRIDDGMELL 418



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G +  AV + ++      Q   + Y +++  +C+      A  L+R+M
Sbjct: 186 TFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245

Query: 79  IR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 +P+   Y+ ++++ C  G+  +AQ    EM +KG  P +   + ++ G  ++G 
Sbjct: 246 EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR 305

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A+Q++ +M+++    D+ T+N+LI    K G+     E+Y  +   G+  +  TY  
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K   +D A  + + +   G  P    +  +I G     + DD      EM   G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   Y  LI      G    A + L EM   GL P     D + DGL + GK  L +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK--LKD 483

Query: 318 KIELLEVSLRS 328
            +E+ +V  +S
Sbjct: 484 ALEMFKVMQKS 494



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A  +   F  A  L   M+ +G +P+  TY+ +++ +C   ++  A+    
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ KG +P +   + L+ G   A  ++   +++++M + G V D  T+N+LI      G
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA---FRLLHNLVED------- 221
           ++   +++   +   GLC D+ T   L+  +   G + +A   F+++    +D       
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 222 -GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G +P    Y  +I G+   G+F +A   + EM  +G  P+   Y+ +I    +  R  E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           A      M     +P    F  + +G    G+ D
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 122/275 (44%), Gaps = 11/275 (4%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     S +  T + +I+ +     +D+ +E+ ++ T          YN+L+     V 
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------- 115
             + A  L++ MI  G  PD  T   L++  C +GK+++A E  + M             
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T++S+I+ +CK   ++ 
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +M+ S+       +V T+  LI    KAG +D+   L   +   G       Y  +I 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           G  + G  + A   F EM   G  P+      ++T
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 659



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 11/260 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L     T + +I  F   G ++ A+++  +  +      ++  ++LL  LC+   
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 68  FHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              A  + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       ++ GL     L+ A QM + M  + F  ++ TF +LI   CK+G V+  
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E++  + + G+ A+  TY  LI    K G I+ A  +   ++  G  P       ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 237 MFRRGQFDDAFCFFSEMKIK 256
           ++ + +   A     ++++ 
Sbjct: 661 LWSKEELKRAVAMLEKLQMS 680



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L ++M RK    D  ++ IL+  +CS  K+  A     +++  G +P V   + L+ GL
Sbjct: 100 SLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGL 159

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A  + ++M +     ++ TF +L+  +C+ G +   V +   + + GL    
Sbjct: 160 CVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            TY  ++  + K G    A  LL  + E  H  P   +Y+ II  + + G+  DA   F+
Sbjct: 220 ITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFT 279

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  P+   Y  +I      GR+ +A   L EM E  ++P    ++ + +     G
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 312 KHDLAEKI 319
           K   AE++
Sbjct: 340 KFFEAEEL 347


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 5/299 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
             +++I    +   +D A  V  +     C+   + YN  +  LC+ +    A+ L+++M
Sbjct: 9   AFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKM 68

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K  +P   TY  LV+    +G++ EA   L++M +KG +P ++   +++ GL  AG +
Sbjct: 69  DEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRV 128

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA----DVST 194
           E A+++   M+  G   D   + +LI+ +CKSG+ E    +Y         A    DV T
Sbjct: 129 EEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVT 188

Query: 195 YKILIPAVSKAGMIDEAFRLLHN-LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           Y  LI  + KAG I EA ++  +  VE G  P    Y  II G+ + G+ ++    F EM
Sbjct: 189 YTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 248

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + +G+ P+   Y  LI    +     +A     +M + G    +  ++++ DGL   G+
Sbjct: 249 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 307



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 150/358 (41%), Gaps = 45/358 (12%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M     S + +T +++I+   K G V+ A  +F       C+    +Y +L+  LC+
Sbjct: 100 LEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCK 159

Query: 65  VKLFHGAYALIRRM----------------------------------------IRKGFV 84
                 AYAL +                                          + +GF+
Sbjct: 160 SGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI 219

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  +++  C  G++ E  E   EM ++G+ P       L+ G + A  +  A ++
Sbjct: 220 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 279

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M++ G V+   T+N +++ +CK+G V      + ++ + G  A V TY  L+     
Sbjct: 280 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 339

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +  A  L   +++ G +P    Y  II+G+ R G+   A+ +F ++  +   P+  V
Sbjct: 340 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPD--V 397

Query: 265 YT---MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           YT    L  +C R     +       M   G +P    + ++ DG+   G  ++A +I
Sbjct: 398 YTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEI 455



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 134/286 (46%), Gaps = 4/286 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K  ++  A  V+ +          + YN +L  LC+      AYA    M
Sbjct: 259 TYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAM 318

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G V    TY+ L++ +CS G +  A E  + M D+G  P +   +++++GL  AG L
Sbjct: 319 EERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKL 378

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A     K++++    D+ TFN+ +  +C+    V   VE++ S+   G   ++ +Y I
Sbjct: 379 AKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSI 438

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + +AG ++ A  +   +V  G  P   ++  +I+ +   G+ D+A   F E++ + 
Sbjct: 439 LMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRS 498

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P     +++L  +  R  R  EA      M   G  P  R +DL 
Sbjct: 499 APDAWSYWSLLDGL-SRCERMEEARLLSFHMKLQGCAP--RHYDLT 541



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 7/309 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I+   K   VD+A ++  K     C    + Y +L+  L +      A A++ +M
Sbjct: 44  TYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQM 103

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P  +TY ++++    +G++ EA+    +M   G  P       L++GL  +G  
Sbjct: 104 VEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKP 163

Query: 139 ESA----KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVS 193
           E A    K+   +      V D+ T+ SLI+ +CK+G +    +++     + G   D  
Sbjct: 164 EEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAV 223

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  +I  + K G ++E     H +   G++P    YA +I G  +      A   + +M
Sbjct: 224 TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 283

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G   +   Y +++    + GR  EA    + M E G       +  + DG   C + 
Sbjct: 284 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF--CSEG 341

Query: 314 DLAEKIELL 322
           +++  +EL 
Sbjct: 342 NVSAAVELF 350



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 138/299 (46%), Gaps = 2/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+   K G V+   E F++      +   + Y +L+    + K+   A+ + R+M
Sbjct: 224 TYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQM 283

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G V    TY I+++  C +G++ EA      M ++G    V     L+ G  + G +
Sbjct: 284 LQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 343

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A ++  +M+ +G   +L ++N +I  +C++G++      +  + +  LC DV T+   
Sbjct: 344 SAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAF 403

Query: 199 IPAV-SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +  +  +   + +   L  ++V  G  P    Y+ ++ G+ R G  + A   F EM  +G
Sbjct: 404 LHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRG 463

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             P+  V+  LI      GR  EA     E+ E    P +  +  + DGL  C + + A
Sbjct: 464 VAPDVVVFNTLIRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCERMEEA 521



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 116/248 (46%), Gaps = 2/248 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS  T ++I++   K G V  A   F       C   V+ Y++L+   C       A  L
Sbjct: 290 VSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVEL 349

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            RRM+ +G  P+  +Y I++   C +GK+ +A  + +++  +   P V   +  + GL  
Sbjct: 350 FRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQ 409

Query: 135 A-GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +    ++   M+ QG   +L +++ L++ IC++G +E  +E++  +   G+  DV 
Sbjct: 410 RLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVV 469

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            +  LI  +  AG +DEA  +   L E    P    Y  ++ G+ R  + ++A      M
Sbjct: 470 VFNTLIRWLCIAGRVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHM 528

Query: 254 KIKGHPPN 261
           K++G  P 
Sbjct: 529 KLQGCAPR 536



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+  F  +I  +C+   ++    +     + G   D  TY + I  + KA  +D+AF+LL
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + E    P    Y  ++ G+ + G+ D+A     +M  KG+ P    YT++I    + 
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           GR  EA    V+M   G  P +  +  +  GL   GK + A
Sbjct: 126 GRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEA 166



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 62/129 (48%)

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+  + ++I  + +   +DEAF +L   V  G +P    Y   I G+ +  + DDAF   
Sbjct: 6   DMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLL 65

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +M  K   P    YT L+    + GR  EA   L +M E G +P  + + +V DGL   
Sbjct: 66  KKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKA 125

Query: 311 GKHDLAEKI 319
           G+ + A +I
Sbjct: 126 GRVEEARRI 134


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         +  YNS++   C    +  A  L++ M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  TY  L+NA+   GK  EA+E   EM  +G  P       ++ G      L++
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ M   M  +G   +L TFN+LI+  C +  ++  +E+ + + + GL AD +TY  LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---- 256
                G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+      
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 257 --GHP-----PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              HP     P+   Y +LI+     G+F+EA     EM   G+ P +  +  + DGL  
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL-- 556

Query: 310 CGKHDLAEKIELLE 323
           C +  L E  ++ +
Sbjct: 557 CKQSRLDEATQMFD 570



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 136/327 (41%), Gaps = 13/327 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  +  T S +I+ F K   +D A  +F       C   ++ +N+L+   C  K 
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M   G V D  TY  L++ +   G +  A + LQEM   G  P +   D 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFC 176
           L+ GL + G L+ A +M   M K            G   D++T+N LI  +   G+    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   G+  D  TY  +I  + K   +DEA ++  ++      P    +  +I G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             + G+ DD    F EM  +G   N   Y  LI    + G    A +   EM   G+ P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +     +  GL +  K +L   + +LE
Sbjct: 651 TITIRNMLTGLWS--KEELKRAVAMLE 675



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 15/326 (4%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W   E  L +     +SP   T + +I  F K G    A E++++          + Y+S
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++   C+      A  +   M  KG  P+  T+  L++ +C + ++ +  E L EM++ G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   + L+ G    G L +A  ++ +MI  G   D+ T ++L++ +C +G+++  +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 178 EMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           EM+  + K            G+  DV TY ILI  +   G   EA  L   +   G  P 
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+ ++ + D+A   F  M  K   PN   +T LI    + GR  +      
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G+   +  +  +  G +  G 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGN 631



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 127/288 (44%), Gaps = 3/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+  F K T       V+ +N+LL  LC       A  L  +M      P+  T+  L+N
Sbjct: 133 ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++ EA   L  M + G  P       +V G+   G   SA  ++ KM +   ++
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            ++  ++++I+++CK G       ++  + + G+  D+ TY  +I     +G   +A +L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  ++E    P    Y  +I    + G+F +A   + EM  +G  PN   Y+ +I    +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             R   A +    M   G +P    F+ + DG   CG   + + +ELL
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY--CGAKRIDDGMELL 418



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G +  AV + ++      Q   + Y +++  +C+      A  L+R+M
Sbjct: 186 TFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245

Query: 79  IR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 +P+   Y+ ++++ C  G+  +AQ    EM +KG  P +   + ++ G  ++G 
Sbjct: 246 EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR 305

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A+Q++ +M+++    D+ T+N+LI    K G+     E+Y  +   G+  +  TY  
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K   +D A  + + +   G  P    +  +I G     + DD      EM   G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   Y  LI      G    A + L EM   GL P     D + DGL + GK  L +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK--LKD 483

Query: 318 KIELLEVSLRS 328
            +E+ +V  +S
Sbjct: 484 ALEMFKVMQKS 494



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A  +   F  A  L   M+ +G +P+  TY+ +++ +C   ++  A+    
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ KG +P +   + L+ G   A  ++   +++++M + G V D  T+N+LI      G
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA---FRLLHNLVED------- 221
           ++   +++   +   GLC D+ T   L+  +   G + +A   F+++    +D       
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 222 -GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G +P    Y  +I G+   G+F +A   + EM  +G  P+   Y+ +I    +  R  E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           A      M     +P    F  + +G    G+ D
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 12/274 (4%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     S +  T + +I+ +     +D+ +E+ ++ T          YN+L+     V 
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------- 115
             + A  L++ MI  G  PD  T   L++  C +GK+++A E  + M             
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T++S+I+ +CK   ++ 
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +M+ S+       +V T+  LI    KAG +D+   L   +   G       Y  +I 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 236 GMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTML 268
           G  + G  + A   F EM   G +P    +  ML
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 11/260 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L     T + +I  F   G ++ A+++  +  +      ++  ++LL  LC+   
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 68  FHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              A  + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       ++ GL     L+ A QM + M  + F  ++ TF +LI   CK+G V+  
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E++  + + G+ A+  TY  LI    K G I+ A  +   ++  G  P       ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 237 MFRRGQFDDAFCFFSEMKIK 256
           ++ + +   A     ++++ 
Sbjct: 661 LWSKEELKRAVAMLEKLQMS 680



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 115/248 (46%), Gaps = 1/248 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L ++M RK    D  ++ IL+  +CS  K+  A     +++  G +P V   + L+ GL
Sbjct: 100 SLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGL 159

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A  + ++M +     ++ TF +L+  +C+ G +   V +   + + GL    
Sbjct: 160 CVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            TY  ++  + K G    A  LL  + E  H  P   +Y+ II  + + G+  DA   F+
Sbjct: 220 ITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFT 279

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  P+   Y  +I      GR+ +A   L EM E  ++P    ++ + +     G
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 312 KHDLAEKI 319
           K   AE++
Sbjct: 340 KFFEAEEL 347


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/305 (28%), Positives = 140/305 (45%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K GL   A E+ +K      +  V++YN ++  LC+  L   A  L   +
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDV 244

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  L++ +C  G+ RE    L +M D+  N  V   ++L+  L   G L
Sbjct: 245 VGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGML 304

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M N MI++G   DL TFN+L+   C   +V    +++ +  + G+  DV +Y IL
Sbjct: 305 GKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNIL 364

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   IDEA  L + +      P    Y+ +I G+ + G+   A+  FS +   G 
Sbjct: 365 IIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGP 424

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +++    +     +A      M E GLTP    ++++ +G   C    + E 
Sbjct: 425 SPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGY--CKSKRIDEA 482

Query: 319 IELLE 323
           + L E
Sbjct: 483 MNLFE 487



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 119/246 (48%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N    V  YN L+ ALC+  +   A+ +   MI +G  PD  T+  L++ +C    + EA
Sbjct: 283 NVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEA 342

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++     ++ G  P V   ++L+ G      ++ A  + NKM  +    ++ T++SLI+ 
Sbjct: 343 RKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDG 402

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CKSG + +  E++ ++   G   +V TY I++ A+ K  ++D+A  L + + E G  P 
Sbjct: 403 LCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPN 462

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
            S Y  +I G  +  + D+A   F EM  +   P+   Y  LI    + GR   A     
Sbjct: 463 VSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFN 522

Query: 287 EMTEMG 292
            M + G
Sbjct: 523 VMHDGG 528



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 137/306 (44%), Gaps = 2/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ I++    +G V  A+E  +   A       + Y +L+  LC++ L   A+ L+ +M
Sbjct: 150 TLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKM 209

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+   Y ++V+  C  G + EA++   ++  +G +P V     L+ G    G  
Sbjct: 210 EGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQW 269

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               +++  M+ +   L++ T+N LI+ +CK G +    +M   + + G   D+ T+  L
Sbjct: 270 REVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTL 329

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        + EA +L     E G  P    Y  +I G  +  + D+A   F++M  K  
Sbjct: 330 MSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL 389

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y+ LI    + GR   A      + + G +P    ++++ D L  C    + + 
Sbjct: 390 APNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDAL--CKIQLVDKA 447

Query: 319 IELLEV 324
           IEL  +
Sbjct: 448 IELFNL 453



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 122/261 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N++++  T +++I+   K G++  A ++ N       +  ++ +N+L+   C    
Sbjct: 279 MVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYND 338

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L       G  PD  +Y IL+  +C + ++ EA     +M+ K   P +     
Sbjct: 339 VVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSS 398

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  +G +  A ++ + +   G   ++ T+N +++ +CK   V+  +E++  + + G
Sbjct: 399 LIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERG 458

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +VS+Y ILI    K+  IDEA  L   +      P    Y  +I G+ + G+   A+
Sbjct: 459 LTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAW 518

Query: 248 CFFSEMKIKGHPPNRPVYTML 268
             F+ M   G P +   Y +L
Sbjct: 519 ELFNVMHDGGPPVDVITYNIL 539



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 2/292 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+AV +F +    +    V+ +N +L ++ ++K +  A +L ++M  +G  P   T +I
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G M  A   L  +  +G+         +++GL   G +  A +  + ++ QG
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F+LD  T+ +LI  +CK G      E+ + +    +  +V  Y +++  + K G++ EA 
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEAR 238

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L  ++V  G  P    Y  +I G    GQ+ +      +M  +    N   Y +LI   
Sbjct: 239 DLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDAL 298

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            + G   +A +    M E G  P    F+ +  G   C  +D+ E  +L + 
Sbjct: 299 CKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGY--CLYNDVVEARKLFDT 348



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 2/192 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P   S  ++I  + K+  +D A+ +FNK         ++ Y+SL+  LC+      A+
Sbjct: 354 ITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAW 413

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   +   G  P+  TY I+++A C    + +A E    M ++G  P V   ++L+ G 
Sbjct: 414 ELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGY 473

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +  ++ A  +  +M ++  V D  T+N LI+ +CKSG +    E++  +   G   DV
Sbjct: 474 CKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDV 533

Query: 193 STYKILIPAVSK 204
            TY IL  A SK
Sbjct: 534 ITYNILFDAFSK 545



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+    +     S +  T +++++   K  LVD A+E+FN          V  YN L+  
Sbjct: 413 WELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILING 472

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+ K    A  L   M R+  VPD  TY  L++  C SG++  A E    M D G  PP
Sbjct: 473 YCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG--PP 530

Query: 122 V 122
           V
Sbjct: 531 V 531


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 140/314 (44%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         +  YNS++   C    +  A  L++ M+ 
Sbjct: 259 SAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLE 318

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  TY  L+NA+   GK  EA+E   EM  +G  P       ++ G      L++
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ M   M  +G   +L TFN+LI+  C +  ++  +E+ + + + GL AD +TY  LI 
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIH 438

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---- 256
                G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+      
Sbjct: 439 GFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDL 498

Query: 257 --GHP-----PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              HP     P+   Y +LI+     G+F+EA     EM   G+ P +  +  + DGL  
Sbjct: 499 DASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGL-- 556

Query: 310 CGKHDLAEKIELLE 323
           C +  L E  ++ +
Sbjct: 557 CKQSRLDEATQMFD 570



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 136/327 (41%), Gaps = 13/327 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  +  T S +I+ F K   +D A  +F       C   ++ +N+L+   C  K 
Sbjct: 351 MLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKR 410

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M   G V D  TY  L++ +   G +  A + LQEM   G  P +   D 
Sbjct: 411 IDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDT 470

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFC 176
           L+ GL + G L+ A +M   M K            G   D++T+N LI  +   G+    
Sbjct: 471 LLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   G+  D  TY  +I  + K   +DEA ++  ++      P    +  +I G
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             + G+ DD    F EM  +G   N   Y  LI    + G    A +   EM   G+ P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +     +  GL +  K +L   + +LE
Sbjct: 651 TITIRNMLTGLWS--KEELKRAVAMLE 675



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 15/326 (4%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W   E  L +     +SP   T + +I  F K G    A E++++          + Y+S
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++   C+      A  +   M  KG  P+  T+  L++ +C + ++ +  E L EM++ G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   + L+ G    G L +A  ++ +MI  G   D+ T ++L++ +C +G+++  +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDAL 485

Query: 178 EMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           EM+  + K            G+  DV TY ILI  +   G   EA  L   +   G  P 
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y+ +I G+ ++ + D+A   F  M  K   PN   +T LI    + GR  +      
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 605

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK 312
           EM   G+   +  +  +  G +  G 
Sbjct: 606 EMGRRGIVANAITYITLICGFRKVGN 631



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 3/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G +  AV + ++      Q   + Y +++  +C+      A  L+R+M
Sbjct: 186 TFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKM 245

Query: 79  IR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 +P+   Y+ ++++ C  G+  +AQ    EM +KG  P +   + ++ G  ++G 
Sbjct: 246 EEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR 305

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A+Q++ +M+++    D+ T+N+LI    K G+     E+Y  +   G+  +  TY  
Sbjct: 306 WSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSS 365

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K   +D A  + + +   G  P    +  +I G     + DD      EM   G
Sbjct: 366 MIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETG 425

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   Y  LI      G    A + L EM   GL P     D + DGL + GK  L +
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK--LKD 483

Query: 318 KIELLEVSLRS 328
            +E+ +V  +S
Sbjct: 484 ALEMFKVMQKS 494



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 125/274 (45%), Gaps = 11/274 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A  +   F  A  L   M+ +G +P+  TY+ +++ +C   ++  A+    
Sbjct: 325 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFY 384

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ KG +P +   + L+ G   A  ++   +++++M + G V D  T+N+LI      G
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA---FRLLHNLVED------- 221
           ++   +++   +   GLC D+ T   L+  +   G + +A   F+++    +D       
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 222 -GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G +P    Y  +I G+   G+F +A   + EM  +G  P+   Y+ +I    +  R  E
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           A      M     +P    F  + +G    G+ D
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 122/274 (44%), Gaps = 12/274 (4%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     S +  T + +I+ +     +D+ +E+ ++ T          YN+L+     V 
Sbjct: 385 LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVG 444

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------- 115
             + A  L++ MI  G  PD  T   L++  C +GK+++A E  + M             
Sbjct: 445 DLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPF 504

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T++S+I+ +CK   ++ 
Sbjct: 505 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDE 564

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +M+ S+       +V T+  LI    KAG +D+   L   +   G       Y  +I 
Sbjct: 565 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC 624

Query: 236 GMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTML 268
           G  + G  + A   F EM   G +P    +  ML
Sbjct: 625 GFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 3/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+  F K T       V+ + +LL  LC       A  L  +M      P+  T+  L+N
Sbjct: 133 ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMN 192

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++ EA   L  M + G  P       +V G+   G   SA  ++ KM +   ++
Sbjct: 193 GLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHII 252

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            ++  ++++I+++CK G       ++  + + G+  D+ TY  +I     +G   +A +L
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  ++E    P    Y  +I    + G+F +A   + EM  +G  PN   Y+ +I    +
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK 372

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             R   A +    M   G +P    F+ + DG   CG   + + +ELL
Sbjct: 373 QNRLDAAEHMFYLMATKGCSPNLITFNTLIDGY--CGAKRIDDGMELL 418



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 115/260 (44%), Gaps = 11/260 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L     T + +I  F   G ++ A+++  +  +      ++  ++LL  LC+   
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480

Query: 68  FHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
              A  + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +
Sbjct: 481 LKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       ++ GL     L+ A QM + M  + F  ++ TF +LI   CK+G V+  
Sbjct: 541 GIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDG 600

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E++  + + G+ A+  TY  LI    K G I+ A  +   ++  G  P       ++ G
Sbjct: 601 LELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660

Query: 237 MFRRGQFDDAFCFFSEMKIK 256
           ++ + +   A     ++++ 
Sbjct: 661 LWSKEELKRAVAMLEKLQMS 680



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 1/248 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L ++M RK    D  ++ IL+  +CS  K+  A     +++  G +P V     L+ GL
Sbjct: 100 SLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGL 159

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A  + ++M +     ++ TF +L+  +C+ G +   V +   + + GL    
Sbjct: 160 CVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQ 219

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            TY  ++  + K G    A  LL  + E  H  P   +Y+ II  + + G+  DA   F+
Sbjct: 220 ITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFT 279

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  P+   Y  +I      GR+ +A   L EM E  ++P    ++ + +     G
Sbjct: 280 EMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEG 339

Query: 312 KHDLAEKI 319
           K   AE++
Sbjct: 340 KFFEAEEL 347


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 134/274 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G +  A  + ++      +      N++L+ LC+ K +  A  L++  
Sbjct: 417 TYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSP 476

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++GF+PD+ +Y  ++ A+        A     EM +K   P +   + L++GL   G L
Sbjct: 477 PQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRL 536

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +N+++++G V D  T+N +I   CK G++E   + +  + +     DV T   L
Sbjct: 537 KEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTL 596

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A +L  + VE G K     Y  +I+ M + G  D A  FF++M+ +G 
Sbjct: 597 MNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGL 656

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P+   Y ++++     GR  EA N L ++ E G
Sbjct: 657 QPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG 690



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M+   +  +  T +++I+   K G ++ A+   NK         V+ YN+L+ A 
Sbjct: 366 RLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAH 425

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      AY L+  M+R+G   D  T   ++   C   +  EAQ  LQ    +GF P  
Sbjct: 426 CKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMP-- 483

Query: 123 RGRDLLVQGLLNAGYL-----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
              D +  G + A Y      E A ++ ++MI++     + T+N+LI+ + + G ++  +
Sbjct: 484 ---DEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAI 540

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +    + + GL  D +TY I+I A  K G ++ AF+  + +VE+  KP       ++ G+
Sbjct: 541 DKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGL 600

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPI 296
              G+ D A   F     KG   +   Y  LI TMC + G    A ++  +M   GL P 
Sbjct: 601 CLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMC-KDGDVDTALHFFADMEARGLQPD 659

Query: 297 SRCFDLVTDGLKNCGKHDLAEKI 319
           +  +++V   L   G+ + A+ +
Sbjct: 660 AFTYNVVLSALSEAGRTEEAQNM 682



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 10/277 (3%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ ++++         +  YN+L+  L  +     A   +  ++ KG VPD  TY I+++
Sbjct: 504 ALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIH 563

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A+C  G +  A +F  +M +  F P V   + L+ GL   G L+ A ++    +++G  +
Sbjct: 564 AYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKV 623

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+ T+N+LI+T+CK G+V+  +  +  +   GL  D  TY +++ A+S+AG  +EA  +L
Sbjct: 624 DVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNML 683

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC---FFSEMKIKGHPPNRP--VYTMLIT 270
           H L E G     +L       + +    D+A       +E +   +P +     YT L+ 
Sbjct: 684 HKLAESG-----TLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVN 738

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                G+F EA   L EM + G++  S  +  + +GL
Sbjct: 739 GLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLMEGL 775



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 135/301 (44%), Gaps = 9/301 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T + ++  + + G +  A +V    TA   +  +  YN L   LC+   
Sbjct: 265 MKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGK 324

Query: 68  FHGAYALIRRMIRKG-FVPDKRTYAILVNA----WCSSGKMREAQEFLQEMSDKGFNPPV 122
              A+ L   M R G  +PD  TY  L +A     CSS  +R     L+EM +KG    +
Sbjct: 325 VDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALR----LLEEMREKGVKATL 380

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++++GL   G LE A   +NKM   G   D+ T+N+LI   CK+G +     +   
Sbjct: 381 VTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDE 440

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  D  T   ++  + K    +EA  LL +  + G  P    Y  ++   F+   
Sbjct: 441 MVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYN 500

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   + EM  K   P+   Y  LI    R GR  EA + L E+ E GL P    +++
Sbjct: 501 SEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNI 560

Query: 303 V 303
           +
Sbjct: 561 I 561



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 112/259 (43%), Gaps = 1/259 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           +++ F    A         +N L+   C       A + +  M   G  PD  TY  L+N
Sbjct: 188 SLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLN 247

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C  G + EA+  L  M   G  P     + LV      G+++ A ++V  M   GF  
Sbjct: 248 AHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEP 307

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYKILIPAVSKAGMIDEAFRL 214
           DL T+N L   +C++G+V+    +   + +LG L  DV TY  L  A  K     +A RL
Sbjct: 308 DLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRL 367

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  + E G K     +  +IKG+ + G+ + A    ++M   G  P+   Y  LI    +
Sbjct: 368 LEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCK 427

Query: 275 GGRFVEAANYLVEMTEMGL 293
            G   +A   + EM   GL
Sbjct: 428 AGNIAKAYTLMDEMVRRGL 446



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 91/233 (39%), Gaps = 40/233 (17%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II  + K G ++NA +  NK    + +  V+  N+L+  LC       A  L    
Sbjct: 557 TYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESW 616

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG   D  TY  L+   C  G +  A  F  +M  +G  P     ++++  L  AG  
Sbjct: 617 VEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRT 676

Query: 139 ESAKQMVNKM-----IKQGFVLDL------------------------------ETFNSL 163
           E A+ M++K+     + Q F   L                              E +  L
Sbjct: 677 EEAQNMLHKLAESGTLSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKL 736

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +  +C SG+ +    +   + + G+  D STY  L+      G++    RL H
Sbjct: 737 VNGLCTSGQFKEAKAILDEMMQKGMSVDSSTYITLM-----EGLVKRQKRLTH 784



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 2/166 (1%)

Query: 157 LETFNSLIETICKSGEV--EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           L+  N+++  + +S     +  ++ + S+  L L  +  T+ +L+      G + +A   
Sbjct: 167 LQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALST 226

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  +   G  P    Y  ++    R+G   +A    + MK  G  P RP Y  L++   R
Sbjct: 227 LSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYAR 286

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
            G   +A   +  MT  G  P    ++++  GL   GK D A +++
Sbjct: 287 LGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLK 332


>gi|308082018|ref|NP_001183846.1| uncharacterized protein LOC100502439 [Zea mays]
 gi|238014984|gb|ACR38527.1| unknown [Zea mays]
 gi|414872746|tpg|DAA51303.1| TPA: hypothetical protein ZEAMMB73_971718 [Zea mays]
          Length = 623

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 6/273 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N+L+   C+ ++   A   ++ M R GF P   TY  L+ A+C     +     L EM 
Sbjct: 304 FNTLVHGWCKARMLKEARETMKEMERHGFSPSVTTYTCLIEAYCMEKDFQTVDGILDEMH 363

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +    +++  L  AG  + A    +K+ + G  LD   +N LI  +C++G ++
Sbjct: 364 TKGCTPNIITYTIVMHALGKAGRTQEALDTFDKVKQDGCALDASFYNCLIYILCRAGRLQ 423

Query: 175 ---FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
              F VE  +   + G+  +++T+  LI A     + + A +LL  + E    P    Y 
Sbjct: 424 DANFVVEEMH---RTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYT 480

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           P++K   RR            M  K   P+   YT+L+    R GR  ++  +L EM   
Sbjct: 481 PLLKLCCRRKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLK 540

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G TP    FDLV + LKN        KI+LL +
Sbjct: 541 GFTPQQATFDLVLEKLKNMHMLSAVRKIQLLRM 573



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    +S +  T + +I     H L +NA+++  +    +C   +  Y  LL   C 
Sbjct: 429 VEEMHRTGISPNLTTFNTLISAACDHSLAENALKLLVQMEEQSCNPDIKTYTPLLKLCCR 488

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K       LI  M RK   PD  TY +LV   C +G++ ++  FL+EM  KGF P    
Sbjct: 489 RKWVKTLLFLICHMFRKDITPDFSTYTLLVCWLCRNGRLTQSCLFLEEMVLKGFTPQQAT 548

Query: 125 RDLLVQGLLNAGYLESAKQM 144
            DL+++ L N   L + +++
Sbjct: 549 FDLVLEKLKNMHMLSAVRKI 568


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 2/302 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +S+SP   T +L+I+   K GLVD+A++VF   T   C+  V  Y +L+  LC+      
Sbjct: 193 VSISPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDE 252

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L+  M   G  P   T+ +L+N  C  G +  A + +  M  KG  P     + L+ 
Sbjct: 253 AVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIH 312

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G LE A  ++++M+    V ++ T+ ++I  + K G       +   + + G C 
Sbjct: 313 GLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCV 372

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +   Y  LI  + K G   EA  L   +   G++    +Y+ +I G+ R G+ DDA    
Sbjct: 373 NEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVL 432

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           SEM  KG  PN    + L+      G    A     +M +   T    C+ ++  GL   
Sbjct: 433 SEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKD 492

Query: 311 GK 312
           GK
Sbjct: 493 GK 494



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 7/279 (2%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNK---CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           L++II+E    GL   A+E +N        +    VL +N ++ A+C+V L   A  + R
Sbjct: 168 LNVIIQE----GLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVFR 223

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
            M  +   PD  TY  L++  C + ++ EA   L EM   G  P     ++L+ GL   G
Sbjct: 224 DMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKG 283

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            L  A ++V+ M  +G + +  T+N+LI  +C  G++E  + +   +       +V TY 
Sbjct: 284 DLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYG 343

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I  + K G   +   +L  + E G+     +Y+ +I G+F+ G+  +A   F EM +K
Sbjct: 344 TIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVK 403

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+  N  VY+ +I    R G+  +A   L EMT  G TP
Sbjct: 404 GYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTP 442



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 136/327 (41%), Gaps = 44/327 (13%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP T +++I    K G +  A ++ +      C    + YN+L+  LC       A +L+
Sbjct: 268 SPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLL 327

Query: 76  RRMIRKGFVPDKRTYAILVNA---------------------WC--------------SS 100
            RM+    VP+  TY  ++N                      +C                
Sbjct: 328 DRMVSSKCVPNVVTYGTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKE 387

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           GK +EA    +EM+ KG+         ++ GL   G  + A +++++M  +G   +  T 
Sbjct: 388 GKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTC 447

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +SL++   ++G     VE++  + K     +   Y +LI  + K G + EA  +   ++ 
Sbjct: 448 SSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLG 507

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP---VYTMLITMCGRGGR 277
            G KP    Y+ +I G+   G  +DA   ++EM  +G P ++P    Y +L+    +   
Sbjct: 508 KGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEMLCQG-PDSQPDVVTYNILLNTLCKQSS 566

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVT 304
              A + L  M + G  P     DLVT
Sbjct: 567 ISRAIDLLNSMLDRGCDP-----DLVT 588



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 2/181 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+   + G  D+AVEV ++ T   C       +SL+    E    H A  + + M +
Sbjct: 413 SAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAK 472

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
             F  ++  Y++L++  C  GK++EA     +M  KG  P V     ++ GL  AG +E 
Sbjct: 473 HNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVED 532

Query: 141 AKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           A Q+ N+M+ QG     D+ T+N L+ T+CK   +   +++  S+   G   D+ T  I 
Sbjct: 533 AMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIF 592

Query: 199 I 199
           +
Sbjct: 593 L 593



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 2/223 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+     V+    S +I    K G    A+ +F + T    +   ++Y++++  LC 
Sbjct: 362 LALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCR 421

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M  KG  P+  T + L+  +  +G    A E  ++M+   F      
Sbjct: 422 DGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVC 481

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+ GL   G ++ A  +  +M+ +G   D+  ++S+I  +  +G VE  +++Y  + 
Sbjct: 482 YSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYNEML 541

Query: 185 KLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             G  +  DV TY IL+  + K   I  A  LL+++++ G  P
Sbjct: 542 CQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDP 584


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 136/303 (44%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G +  A+ +            VL YN+L+   C +     A  L   M
Sbjct: 380 TYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEM 439

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY IL+N       +  A+EF  EM  KG  P     +  +   L     
Sbjct: 440 VEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSST 499

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+   M+ +G   D  T+N +I+ +CK+G ++    +   +   GL  D  TY  L
Sbjct: 500 PMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCL 559

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  + G++ EA +LL+ +V DG +P    Y  ++    RRG    A+ +F +M   G 
Sbjct: 560 IHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGI 619

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +LI      GR   A  +  EM E GL P    + L+ DG  NC + + A+ 
Sbjct: 620 EPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDG--NCREGNWADA 677

Query: 319 IEL 321
           I L
Sbjct: 678 IRL 680



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 102/226 (45%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A E F++  +   Q     YN+ + A   +     A+ L   M+ KG  PD  TY ++++
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIID 526

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C +G +++A+    +M   G  P       L+      G L  A++++N M+  G   
Sbjct: 527 GLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSDGLQP 586

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
            + T+  L+ T C+ G +      +  +  +G+  +  TY +LI A+   G    AFR  
Sbjct: 587 SVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHF 646

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           H ++E G  P    Y  +I G  R G + DA   + EM   G PP+
Sbjct: 647 HEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPD 692



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 35/300 (11%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+++  L + +    A      M   G +PD  TY  L+N +C +G ++EA   L 
Sbjct: 343 VVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLG 402

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL-------- 163
           ++   G  P V   + L+ G    G L  A+++  +M++QG   D+ T+  L        
Sbjct: 403 DLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRKVR 462

Query: 164 ----------------IETICKSGEVEFCVEMYYSVCKL-----------GLCADVSTYK 196
                           ++  C +     C E+  S   +           G+  D  TY 
Sbjct: 463 NLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVTYN 522

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ++I  + K G + +A RL   +V DG +P    Y  +I     RG   +A    + M   
Sbjct: 523 VIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMVSD 582

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   YT+L+  C R G    A  +  +M ++G+ P    ++++   L   G+  LA
Sbjct: 583 GLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLA 642



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + YN ++  LC+      A  L  +M+  G  PD  TY  L++A C  G +REA++ L 
Sbjct: 518 TVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLN 577

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P V    +LV      G L SA     KM+  G   +  T+N LI  +C +G
Sbjct: 578 GMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTG 637

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                   ++ + + GL  +  TY +LI    + G   +A RL   + ++G  P    + 
Sbjct: 638 RTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHN 697

Query: 232 PIIKG 236
            + KG
Sbjct: 698 ALFKG 702



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 106/237 (44%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+ A    G +R+A+    EM ++G  P V   + ++ GLL     E+A+    +M
Sbjct: 310 TYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEM 369

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G + D+ T+NSL+   CK+G ++  + +   + + GL   V TY  LI    + G +
Sbjct: 370 RAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDL 429

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA RL   +VE G  P    Y  ++ G  +      A  FF EM  KG  P+   Y   
Sbjct: 430 AEARRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTR 489

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           I           A      M   G+ P +  ++++ DGL   G    A++++   VS
Sbjct: 490 ICAELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVS 546



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 116/283 (40%), Gaps = 1/283 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            S++  T +++I    + G ++NAV++ +     + +     YN L+ AL E      A 
Sbjct: 270 FSLNDVTFNVVISFLAREGHLENAVKLVDS-MRLSKKASSFTYNPLITALLERGFVRKAE 328

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL   M  +G +P   TY  +++      +   AQ    EM   G  P V   + L+   
Sbjct: 329 ALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRY 388

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG L+ A  ++  + + G    + T+N+LI+  C+ G++     +   + + G   DV
Sbjct: 389 CKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDV 448

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY IL+    K   +  A      ++  G +P    Y   I           AF     
Sbjct: 449 CTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREV 508

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           M +KG  P+   Y ++I    + G   +A     +M   GL P
Sbjct: 509 MMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQP 551



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 109/253 (43%), Gaps = 5/253 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A  R +   G  PD R    ++     + +  + +    EM      P +   + L+   
Sbjct: 188 AAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSF 247

Query: 133 LNAGYLESAKQMVNKMIKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           L  G  + A  ++ +M  QG  F L+  TFN +I  + + G +E  V++  S+ +L   A
Sbjct: 248 LKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSM-RLSKKA 306

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY  LI A+ + G + +A  L   +  +G  P    Y  II G+ +  Q + A   F
Sbjct: 307 SSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKF 366

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +EM+  G  P+   Y  L+    + G   EA   L ++   GL P    ++ + DG   C
Sbjct: 367 AEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY--C 424

Query: 311 GKHDLAEKIELLE 323
              DLAE   L E
Sbjct: 425 RLGDLAEARRLKE 437



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 1/201 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+   K G + +A  +  K  +   Q   + Y  L+ A CE  L   A  L+  M
Sbjct: 520 TYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGM 579

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P   TY ILV+  C  G +  A  + ++M D G  P     ++L+  L   G  
Sbjct: 580 VSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRT 639

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +  ++M+++G   +  T+  LI+  C+ G     + +Y+ + + G+  D  T+  L
Sbjct: 640 PLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNAL 699

Query: 199 IPAVSKAGMIDEAFRLLHNLV 219
                + G +  A   + N+V
Sbjct: 700 FKGFDE-GHMYHAIEYMENIV 719



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 1/137 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  S  T ++++    + G + +A   F K      +   + YN L+ ALC       A+
Sbjct: 584 LQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAF 643

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
                M+ +G  P+K TY +L++  C  G   +A     EM   G  P     + L +G 
Sbjct: 644 RHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKG- 702

Query: 133 LNAGYLESAKQMVNKMI 149
            + G++  A + +  ++
Sbjct: 703 FDEGHMYHAIEYMENIV 719


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 2/294 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M    L  +    + +I      G V +A+ V    T        +++ +++   
Sbjct: 308 KLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGF 367

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L   M ++G   D+ T+  L+N  C +G+++EA   LQEM DKG +  V
Sbjct: 368 CSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDV 427

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +  A ++ N+M+ +    ++ T+ +L + +CK G+V    E+ + 
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHE 487

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C  GL  +V TY  LI  + K G +++A R++  +   GH+     Y  +I  + + G+
Sbjct: 488 MCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGE 547

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTP 295
           FD A     EM  KG  P+   Y +L+      GR VE    L+E M E  + P
Sbjct: 548 FDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGR-VEGGKKLLEWMLEKNVRP 600



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++  +   G ++NAV++ ++  A   +    +Y S++  LC       A  ++  M
Sbjct: 289 TYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDM 348

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D   +  +++ +CS G +  A+   +EM  +G          L+ GL  AG L
Sbjct: 349 TMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGEL 408

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++ +M+ +G  +D+ T+  LI+  CK G +     ++  +    +  +V TY  L
Sbjct: 409 KEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTAL 468

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              + K G +  A  LLH +   G +     Y  +I G+ + G  + A    +EM+  GH
Sbjct: 469 SDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGH 528

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI    + G F  A N L EM + G+ P    ++++ +G    G+ +  +K
Sbjct: 529 RTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKK 588

Query: 319 I 319
           +
Sbjct: 589 L 589



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 124/254 (48%), Gaps = 2/254 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + + +   K G V  A E+ ++      +  V  YNSL+  LC+      A 
Sbjct: 458 VAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAM 517

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M   G   D  TY  L++  C SG+   A   LQEM DKG  P +   ++L+ G 
Sbjct: 518 RIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +E  K+++  M+++    ++ T+NSL++  C    ++   E+Y  +    +  + 
Sbjct: 578 CMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNE 637

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +TY ILI    KA  + EA      ++E G +   S Y+ +I+ + ++ +F +A  FF +
Sbjct: 638 NTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDK 697

Query: 253 MKIKGHPPNRPVYT 266
           M+ +G      VY+
Sbjct: 698 MRNEGLTAEPDVYS 711



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 141/314 (44%), Gaps = 15/314 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ Y LS SP++ + ++        +D A+ +F +    N    V  +N LL AL     
Sbjct: 219 LRQYGLSPSPESCNAVLSRLP----LDEAIALFRELPDKN----VCSHNILLKALLSAGR 270

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A      M      PD  TY  +V+ +C  G++  A + L EM+ KG          
Sbjct: 271 LKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTS 327

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L N G +  A +++  M   G  LD   F ++I   C  G++     ++  + K G
Sbjct: 328 VIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRG 387

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L AD  T+  LI  + +AG + EA R+L  +V+ G       Y  +I G  +RG   +AF
Sbjct: 388 LAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAF 447

Query: 248 CFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTD 305
              +EM  +   PN   YT L   +C +G   V AAN L+ EM   GL      ++ + +
Sbjct: 448 RVHNEMVGRRVAPNVVTYTALSDGLCKQGD--VRAANELLHEMCNKGLELNVYTYNSLIN 505

Query: 306 GLKNCGKHDLAEKI 319
           GL   G  + A +I
Sbjct: 506 GLCKFGNLEQAMRI 519



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 140/329 (42%), Gaps = 6/329 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  + +++     + +I  F   G +  A  +F +          + + +L+  L
Sbjct: 343 RVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGL 402

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  +++ M+ KG   D  TY +L++ +C  G M EA     EM  +   P V
Sbjct: 403 CRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNV 462

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L  GL   G + +A +++++M  +G  L++ T+NSLI  +CK G +E  + +   
Sbjct: 463 VTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTE 522

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   DV TY  LI  + K+G  D A  +L  +++ G KP  + Y  ++ G    G+
Sbjct: 523 MEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGR 582

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +        M  K   PN   Y  L+                  M    + P    +++
Sbjct: 583 VEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNI 642

Query: 303 VTDGLKNCGKHDLAEKI----ELLEVSLR 327
           +  G  +C   ++ E +    E++E  LR
Sbjct: 643 LIKG--HCKARNMKEALYFHQEMIEKGLR 669



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 106/240 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ A+ +  +  A   +  V  Y +L+  LC+   F  A+ +++ M
Sbjct: 499 TYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEM 558

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY +L+N +C SG++   ++ L+ M +K   P V   + L++       +
Sbjct: 559 LDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNM 618

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +S  ++   M  Q    +  T+N LI+  CK+  ++  +  +  + + GL    S+Y  L
Sbjct: 619 KSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSAL 678

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K     EA      +  +G    P +Y+  +   F     +       E+    H
Sbjct: 679 IRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEASH 738


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 155/310 (50%), Gaps = 2/310 (0%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N+ + P  +  S +I    + G +  AV +F++  +   +  V+ YNSL+ A C   L+ 
Sbjct: 107 NMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWK 166

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A     +M+ +G +PD  T+  L++     GK++EA +  + M  +G  P +   + L+
Sbjct: 167 EATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLL 226

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL     ++ A ++   M+++G  +D+ ++N+LI   C SG+ E  + ++  +    L 
Sbjct: 227 NGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELT 286

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             ++TY IL+ A+ + G I  A  L +N+   G  P    Y  ++ G+ + G  ++A   
Sbjct: 287 PSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDV 346

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F  +K   + P+  +Y++LI    +  R+  A     E+  +GL P    ++++ +GL  
Sbjct: 347 FRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCK 406

Query: 310 CGKHDLAEKI 319
            GK   AE++
Sbjct: 407 EGKLLEAERL 416



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  L+I+   K GL    +++F +         V++Y+SL+  LC V     A  L   M
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G   +  TY  L++A C  G  +EA     +M  +G  P V     L+  L   G +
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   MIKQG   ++ T+NSL+  +C   +++  V ++  + + G+  DV +Y  L
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I     +G  +EA  L   +  +   P  + Y  ++K +++ G+   A   F+ M+I G 
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ 320

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT+L+    + G   EA +    +  +   P  R + ++  G+    + + A +
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAME 380

Query: 319 I 319
           I
Sbjct: 381 I 381



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 140/301 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+S +++     G V +A+E+F+K T    Q  +LLY  L+ AL + +    A  L RRM
Sbjct: 11  TVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRM 70

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +    +  TY +++++ C  G   +  +  +EM + G  P V     L+ GL   G L
Sbjct: 71  LSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKL 130

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M+ QG   ++ T+NSLI   C+ G  +     +  +   G+  DV T+  L
Sbjct: 131 REAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTL 190

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G + EA+++   +++ G  P    Y  ++ G+    Q D A   F  M  +G 
Sbjct: 191 IDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGI 250

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y  LI      G+  EA     +M    LTP    + ++   L   G+   A++
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKE 310

Query: 319 I 319
           +
Sbjct: 311 L 311



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 136/294 (46%), Gaps = 3/294 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           AVE+  +  +  C      Y  ++ +LC+  L      + R MI  G  P+   Y+ L+N
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLIN 122

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  GK+REA     EM  +G    V   + L+      G  + A +  ++M+ +G + 
Sbjct: 123 GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP 182

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+ TF +LI+ + K G+V+   +++  + K G   ++ TY  L+  +     +D A RL 
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +VE G K     Y  +I G    G+ ++A   F +M+ +   P+   YT+L+    + 
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           GR   A      M   G +P    + ++ DGL  C    + E I++   SL+S+
Sbjct: 303 GRIRTAKELFNNMQICGQSPSLDTYTVLLDGL--CKNGCIEEAIDVFR-SLKSI 353



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 131/308 (42%), Gaps = 36/308 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G V  A ++F           ++ YNSLL  LC       A  L   M
Sbjct: 186 TFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVM 245

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G   D  +Y  L+N +C+SGK  EA    ++M  +   P +    +L++ L   G +
Sbjct: 246 VERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRI 305

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS---------------- 182
            +AK++ N M   G    L+T+  L++ +CK+G +E  ++++ S                
Sbjct: 306 RTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSIL 365

Query: 183 -------------------VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                              +  +GL  ++ TY I+I  + K G + EA RL   + E G 
Sbjct: 366 IGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGC 425

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE-AA 282
           +     +  II+G  +  Q   A  F   M+ K   PN  V  ML+ +     +  E   
Sbjct: 426 EQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADAQSSELPN 485

Query: 283 NYLVEMTE 290
           N+L E+ +
Sbjct: 486 NFLHELVQ 493



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%), Gaps = 2/246 (0%)

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G+ P+  T + LV   C  GK+ +A E   +M+  GF   +     L+  L      
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M+ +    +  T+  +I+++CK G     ++M+  +  +G+C +V  Y  L
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G + EA  L   +V  G K     Y  +I    R G + +A   FS+M  +G 
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGI 180

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +T LI    + G+  EA      M + G  P    ++ + +GL  C  H +   
Sbjct: 181 LPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGL--CLHHQMDHA 238

Query: 319 IELLEV 324
           + L EV
Sbjct: 239 VRLFEV 244


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 145/324 (44%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K  LV+ A+++F+   A      V+ Y SL+  LC    +  A A++  M
Sbjct: 233 TYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEM 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG------- 131
                +PD  T+++L++ +C  G + EAQ  L+ M++ G  P V   + L+ G       
Sbjct: 293 TSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEV 352

Query: 132 -----------------------LLNAGY-----LESAKQMVNKMIKQGFVLDLETFNSL 163
                                  +L  GY     ++ AKQ+ N+MI QG   +  ++ +L
Sbjct: 353 VEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C+ G++    E++  +   G   D+ TY +L+    K G + +AFRL   +     
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP   +Y  +I  M + G  + A   FSE+ + G  P+  +YT +I    + G   EA  
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALE 532

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
              +M E G  P    ++++  G 
Sbjct: 533 AFRKMEEDGCPPNEFSYNVIIRGF 556



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P   T + +I    K G    A+E+F+   A  CQ  V  Y +++  LC+
Sbjct: 149 LAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCK 208

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  LI++M   G  PD  TY+ L+++ C    + EA +    M  KG +P V  
Sbjct: 209 MGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVS 268

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QGL +    + A  M+N+M     + D+ TF+ LI+  CK G V     +  ++ 
Sbjct: 269 YTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMT 328

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++G+  +V TY  L+   S    + EA +L   ++  G KP    Y+ +I G     + D
Sbjct: 329 EMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRID 388

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+EM  +G  PN   YT LI    + G+  EA     +M   G  P    + ++ 
Sbjct: 389 EAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLL 448

Query: 305 DGL 307
           +G 
Sbjct: 449 EGF 451



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A ++F+      C+  V  Y+ L+   C VK    A  L   MI +G  P+  +Y  
Sbjct: 352 VVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTT 411

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++A+C  GK+REA+E  ++M   G+ P +    +L++G    GYL  A ++   M    
Sbjct: 412 LIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTY 471

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +L  +  LI+++CKSG +    +++  +   GL  DV  Y  +I  + K G++DEA 
Sbjct: 472 LKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEAL 531

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
                + EDG  P    Y  II+G  +      A     EM+ KG
Sbjct: 532 EAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKG 576



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 1/264 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYA 91
           +D+A+  FN         C++ +N LL A+  ++ ++ A  +L ++M   G  P+  T  
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +C    +      L ++   G  P +     L+ GL  AG    A ++ + M+ +
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+ ++I  +CK GE      +   + ++G   DV TY  LI ++ K  +++EA
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             +   +   G  P    Y  +I+G+    ++ +A    +EM      P+   +++LI +
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
             + G  +EA   L  MTEMG+ P
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEP 334



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++E F K G +  A  +F        +  +++Y  L+ ++C+    + A  L   +
Sbjct: 443 TYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSEL 502

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD + Y  ++N  C  G + EA E  ++M + G  P     +++++G L     
Sbjct: 503 FVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDE 562

Query: 139 ESAKQMVNKMIKQGFVLD 156
             A Q++ +M  +GFV D
Sbjct: 563 SRAVQLIGEMRDKGFVAD 580



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 77/204 (37%), Gaps = 35/204 (17%)

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           Y ++   +  +M   G   +  T N LI   C    V+    +   V KLGL   + T+ 
Sbjct: 106 YYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFT 165

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ-------------- 242
            LI  + KAG   +A  L  ++V  G +P    Y  II G+ + G+              
Sbjct: 166 TLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEV 225

Query: 243 ---------------------FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
                                 ++A   FS MK KG  P    YT LI       R+ EA
Sbjct: 226 GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEA 285

Query: 282 ANYLVEMTEMGLTPISRCFDLVTD 305
           +  L EMT + + P    F L+ D
Sbjct: 286 SAMLNEMTSLNIMPDIVTFSLLID 309



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 2/182 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T+S   +I  F + G +  A E+F           +  Y+ LL   C+      A+
Sbjct: 402 LTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAF 461

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R M      P+   Y IL+++ C SG +  A++   E+   G  P V+    ++ GL
Sbjct: 462 RLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGL 521

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A +   KM + G   +  ++N +I    +  +    V++   +   G  AD 
Sbjct: 522 CKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVADE 581

Query: 193 ST 194
            T
Sbjct: 582 GT 583



 Score = 38.1 bits (87), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 35/81 (43%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L    Q  + II    K GL+D A+E F K     C      YN ++    + K    
Sbjct: 505 HGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESR 564

Query: 71  AYALIRRMIRKGFVPDKRTYA 91
           A  LI  M  KGFV D+ T A
Sbjct: 565 AVQLIGEMRDKGFVADEGTTA 585


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 139/286 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ F ++G + +A+++ ++  A  C   V+ YN+ L  LC+ K+F  A  L   M+ 
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G VPD  T+  L+  +C  G M +A    + M      P     + L+ G   AG +  
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGR 555

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK++ + MI++  + D  ++ +++   C SG +   + +   + + G+  ++ T   LI 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              ++G + +A+  L  ++ +G  P    Y  +I G  +    + AF   +EM+ +G   
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           N   Y +++      G+  EA   L +M E+G+ P    +  + +G
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G +D A+ +F      N +   + YN+L+   C+      A  L   M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IRK  +PD  +Y  ++N +CSSG + EA     +M +KG  P +   + L++G   +G +
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + ++KMI  G + D  ++N+LI+   K   +E    +   + K GL  ++ TY ++
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + EA ++L  ++E G  P  + Y+ +I G   +    +AF F  EM  +G 
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743

Query: 259 PPN 261
            P+
Sbjct: 744 VPD 746



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GLV+ A ++ N  ++   +  +L YN++L+ LC++  +  A  ++  M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+  TY  L+   C    + EAQE   EMS +G  P +     L+  L   G+L
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A     +M + G V D   +  LI+  C++G +   ++M   +   G   DV TY   
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K  M  +A  L + +VE G  P    +  +I+G  + G  D A   F  M     
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  LI    + G    A     +M    + P    +  V +G   C    L E 
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGF--CSSGLLPEA 591

Query: 319 IEL 321
           + L
Sbjct: 592 LNL 594



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 2/302 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L++   L ++P   T + ++ E  +   +  A E+F++ +       ++ ++SL+  L  
Sbjct: 350 LIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLAR 409

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A    R M R G VPD   Y IL++ +C +G + +A +   EM  +G    V  
Sbjct: 410 NGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVT 469

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +  + GL        A  + N+M+++G V D  TF +LI   CK G ++  + ++ ++ 
Sbjct: 470 YNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  L  D  TY  LI    KAG +  A  L  +++     P    Y  ++ G    G   
Sbjct: 530 RTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLP 589

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M  KG  PN      LI    R G   +A  YL +M   G+ P S  ++ + 
Sbjct: 590 EALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLI 649

Query: 305 DG 306
           DG
Sbjct: 650 DG 651



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 145/326 (44%), Gaps = 2/326 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  ++++   +SVS    + ++    + G VD A E++ +      +  V   N ++ AL
Sbjct: 208 EAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNAL 267

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ + F      +  M  KG   D  TY  L+NA+C  G + EA + L   S +G  P +
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++ GL   G  + AK ++ +M++ G   +  T+N+L+  IC+   +    E++  
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D+ ++  LI  +++ G + +A      +   G  P   +Y  +I G  R G 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA     EM  +G   +   Y   +    +   F +A     EM E G+ P    F  
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLRS 328
           +  G   C   ++ + + L E  +R+
Sbjct: 508 LIRGY--CKDGNMDKALNLFEAMVRT 531



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 19/243 (7%)

Query: 71  AYALIRRMIRKGFVPDKRT-----------------YAILVNAWCSSGKMREAQEFLQEM 113
           A A I RM+RK  V   +                  Y +LV  +  + K+RE  E  Q +
Sbjct: 154 AQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLIYDLLVRTYVQAKKLREGSEAFQIL 213

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             KG +  +   + L+ GL+  G+++ A ++  ++++ G  L++ T N ++  +CK  + 
Sbjct: 214 RRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKF 273

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E  +     +   G+ AD+ TY  LI A  + G+++EAF+LL++    G +P    Y  I
Sbjct: 274 ENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAI 333

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMG 292
           + G+ + G++D A     EM   G  PN   Y T+L+ +C R    +EA     EM+  G
Sbjct: 334 LYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDN-ILEAQEIFDEMSRRG 392

Query: 293 LTP 295
           + P
Sbjct: 393 VLP 395



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P + S   +I+ + K   ++ A  + N+      Q  ++ YN +L   C       A 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            ++R+MI  G  PD  TY+ L+N   S   M+EA  F  EM  +G  P  R
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 129/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S I+  F ++G +  A+  F K          ++Y  L+   C      GA  +   M
Sbjct: 366 SFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEM 425

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G V D  TY  L+N  C    + +A E  +EM ++G  P       L+ G    G +
Sbjct: 426 VERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNM 485

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +   M  +    D+ T+N+L++  CK GE+E   E++Y +    +     ++ IL
Sbjct: 486 TKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSIL 545

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G++ EAFRL   + E G KP       IIKG  R G    A  F + M  +G 
Sbjct: 546 INGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGV 605

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PP+   Y  LI    +   F  A   +  M E GL P    ++ +  G    G+   AE 
Sbjct: 606 PPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEM 665

Query: 319 I 319
           +
Sbjct: 666 V 666



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I  + K G +  A+ +F   T  + +  V+ YN+L+   C+V     A  L   M
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM 530

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P   +++IL+N +CS G + EA     EM +KG  P +   + +++G L AG L
Sbjct: 531 ISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNL 590

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A   +N MI +G   D  T+N+LI +  K    +    +  ++ + GL  ++ TY  +
Sbjct: 591 SKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAI 650

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G + EA  +LH +++ G  P  S Y  +I G   +    +AF    EM  +G 
Sbjct: 651 LGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGF 710

Query: 259 PPN 261
            P+
Sbjct: 711 VPD 713



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 134/301 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L       +++I  + ++  V  A+++ N+     C   V+ YN+LL  LC  
Sbjct: 388 EKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRG 447

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K+   A  L + M+ +G  PD  T   L++ +C  G M +A    + M+ +   P V   
Sbjct: 448 KMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTY 507

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G +E AK++   MI +       +F+ LI   C  G V     ++  + +
Sbjct: 508 NTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKE 567

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+   + T   +I    +AG + +A   L+ ++ +G  P    Y  +I    +   FD 
Sbjct: 568 KGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDR 627

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF   + M+ +G  PN   Y  ++    R GR  EA   L +M + G+ P    +  + +
Sbjct: 628 AFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLIN 687

Query: 306 G 306
           G
Sbjct: 688 G 688



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 146/320 (45%), Gaps = 4/320 (1%)

Query: 2   WKTIE-LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           WK  E  +K  N+ V+  TL++++    K G +DN     ++         ++ YN+L+ 
Sbjct: 209 WKVYEDFVKSGNI-VNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVN 267

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C   L   A+ L+  M  KG  P   TY  L+N  C  G    A+  L EM   G  P
Sbjct: 268 AYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCP 327

Query: 121 PVRGRD-LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
                + +LV+        E A+++ N+M+++G V DL +F+S++    ++GE+   +  
Sbjct: 328 NAATFNPMLVESCRKEDVWE-AERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAY 386

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  +  +GL  D   Y ILI    +   +  A ++ + +VE G       Y  ++ G+ R
Sbjct: 387 FEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCR 446

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
               DDA   F EM  +G  P+    T LI    + G   +A +    MT   L P    
Sbjct: 447 GKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVT 506

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ + DG    G+ + A+++
Sbjct: 507 YNTLMDGFCKVGEMEKAKEL 526



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 116/252 (46%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL A+ +V     A+ +    ++ G + +  T  I+VNA C  GK+     +L EM +
Sbjct: 193 NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEE 252

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG    +   + LV      G +  A  +V+ M  +G    L T+N+LI  +CK G  E 
Sbjct: 253 KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYER 312

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              +   +  +GLC + +T+  ++    +   + EA R+ + +++ G  P    ++ I+ 
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVG 372

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              R G+   A  +F +MK  G  P+  +YT+LI    R      A     EM E G   
Sbjct: 373 VFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVM 432

Query: 296 ISRCFDLVTDGL 307
               ++ + +GL
Sbjct: 433 DVVTYNTLLNGL 444



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 121/295 (41%), Gaps = 4/295 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + + GLV  A  + +       +  +  YN+L+  LC+   +  A  ++  M
Sbjct: 261 TYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEM 320

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  T+  ++   C    + EA+    EM  +G  P +     +V      G L
Sbjct: 321 LGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGEL 380

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A     KM   G V D   +  LI   C++ +V   ++M   + + G   DV TY  L
Sbjct: 381 GRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTL 440

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY--APIIKGMFRRGQFDDAFCFFSEMKIK 256
           +  + +  M+D+A  L   +VE G   FP  Y    +I G  + G    A   F  M ++
Sbjct: 441 LNGLCRGKMLDDADELFKEMVERG--VFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLR 498

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              P+   Y  L+    + G   +A     +M    + P    F ++ +G  + G
Sbjct: 499 SLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLG 553



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 123/277 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G  + A  V ++            +N +L   C  +    A  +   M
Sbjct: 296 TYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEM 355

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G VPD  +++ +V  +  +G++  A  + ++M   G  P      +L+ G      +
Sbjct: 356 LQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDV 415

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M N+M+++G V+D+ T+N+L+  +C+   ++   E++  + + G+  D  T   L
Sbjct: 416 SGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTL 475

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + +A  L   +     KP    Y  ++ G  + G+ + A   + +M  +  
Sbjct: 476 IHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREI 535

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   +++LI      G   EA     EM E G+ P
Sbjct: 536 FPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKP 572



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 77/149 (51%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + II+ + + G +  A +  N   +       + YN+L+ +  + + 
Sbjct: 565 MKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEEN 624

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A+ LI  M  +G +P+  TY  ++  +   G+M+EA+  L +M DKG NP       
Sbjct: 625 FDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTS 684

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           L+ G ++   ++ A ++ ++M+++GFV D
Sbjct: 685 LINGYVSKDNMKEAFRVHDEMLQRGFVPD 713


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 8/314 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK      S      +I  + + GL + AVE+F +   F C   V +YN +L  L  
Sbjct: 99  LQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLG 158

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                  Y + R M R GF P+  TY +L+ A C + K+  A++ L EMS+KG  P    
Sbjct: 159 ENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVS 218

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++  +   G ++  +++  +     F   +  +N+LI  +CK  + +   E+   + 
Sbjct: 219 YTTVISSMCEVGLVKEGRELAER-----FEPVVSVYNALINGLCKEHDYKGAFELMREMV 273

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V +Y  LI  +  +G I+ AF  L  +++ G  P     + ++KG F RG   
Sbjct: 274 EKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTF 333

Query: 245 DAFCFFSEMKIKGH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           DA   +++M I+G    PN   Y  L+      G  V+A +    M E+G +P  R +  
Sbjct: 334 DALDLWNQM-IRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGS 392

Query: 303 VTDGLKNCGKHDLA 316
           + +G    G  D A
Sbjct: 393 LINGFAKRGSLDGA 406



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 137/303 (45%), Gaps = 39/303 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V +YN+L+  LC+   + GA+ L+R M+ KG  P+  +Y+ L+N  C+SG++  A  FL 
Sbjct: 246 VSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLT 305

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICK 169
           +M  +G +P +     LV+G    G    A  + N+MI+ GF L  ++  +N+L++  C 
Sbjct: 306 QMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIR-GFGLQPNVVAYNTLVQGFCS 364

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG------- 222
            G +   V ++  + ++G   ++ TY  LI   +K G +D A  + + ++  G       
Sbjct: 365 HGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVV 424

Query: 223 ----------HKPF----------------PSL--YAPIIKGMFRRGQFDDAFCFFSEMK 254
                     H  F                PS+  +   IKG+   G+ D A   F +M+
Sbjct: 425 YTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQME 484

Query: 255 IKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            +   PPN   Y  L+    +  R  EA     E+   G+   S  ++ +  G  N G  
Sbjct: 485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLP 544

Query: 314 DLA 316
            +A
Sbjct: 545 GIA 547



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 115/247 (46%), Gaps = 3/247 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W   ++++ + L  +    + +++ F  HG +  AV VF+      C   +  Y SL+ 
Sbjct: 338 LWN--QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLIN 395

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +     GA  +  +M+  G  P+   Y  +V A C   K +EA+  ++ MS +   P
Sbjct: 396 GFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAP 455

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICKSGEVEFCVEM 179
            V   +  ++GL +AG L+ A+++  +M +Q     ++ T+N L++ + K+  +E    +
Sbjct: 456 SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGL 515

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G+    STY  L+     AG+   A +L+  ++ DG  P       II    +
Sbjct: 516 TREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCK 575

Query: 240 RGQFDDA 246
           +G+ + A
Sbjct: 576 QGKAERA 582



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 120/269 (44%), Gaps = 2/269 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           TLS +++     G   +A++++N+    F  Q  V+ YN+L+   C       A ++   
Sbjct: 318 TLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSH 377

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  P+ RTY  L+N +   G +  A     +M   G  P V     +V+ L     
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYK 196
            + A+ ++  M K+     + TFN+ I+ +C +G +++  +++  + +   C  ++ TY 
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYN 497

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+  ++KA  I+EA+ L   +   G +   S Y  ++ G    G    A     +M + 
Sbjct: 498 ELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVD 557

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           G  P+     M+I    + G+   AA  L
Sbjct: 558 GKSPDEITMNMIILAYCKQGKAERAAQML 586



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+++M  +GF   +  +  +++ +   G    A E    + + G +P V+  + ++  LL
Sbjct: 98  LLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLL 157

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               ++    +   M + GF  ++ T+N L++ +CK+ +V+   ++   +   G C D  
Sbjct: 158 GENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAV 217

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +Y  +I ++ + G++ E   L         +P  S+Y  +I G+ +   +  AF    EM
Sbjct: 218 SYTTVISSMCEVGLVKEGRELAERF-----EPVVSVYNALINGLCKEHDYKGAFELMREM 272

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             KG  PN   Y+ LI +    G+   A ++L +M + G  P
Sbjct: 273 VEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHP 314



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 38/266 (14%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    S + +T   +I  F K G +D AV ++NK     C   V++Y +++ ALC    
Sbjct: 378 MEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK 437

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP------ 121
           F  A +LI  M ++   P   T+   +   C +G++  A++  ++M  +   PP      
Sbjct: 438 FKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYN 497

Query: 122 -----------------------VRG-------RDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                                  +RG        + L+ G  NAG    A Q+V KM+  
Sbjct: 498 ELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVD 557

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEM--YYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           G   D  T N +I   CK G+ E   +M    S  +     DV +Y  +I  + ++   +
Sbjct: 558 GKSPDEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCRE 617

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +   LL  ++  G  P  + ++ +I 
Sbjct: 618 DGVILLERMISAGIVPSIATWSVLIN 643



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 9/198 (4%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +++++ L   G ++S + ++ +M  QGF    + F S+I    + G  E  VEM+Y + +
Sbjct: 80  EVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKE 139

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G    V  Y  ++  +     I   + +  ++  DG +P    Y  ++K + +  + D 
Sbjct: 140 FGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDG 199

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A     EM  KG  P+   YT +I +MC  G   V+    L E  E    P+   ++ + 
Sbjct: 200 AKKLLVEMSNKGCCPDAVSYTTVISSMCEVG--LVKEGRELAERFE----PVVSVYNALI 253

Query: 305 DGLKNCGKHDLAEKIELL 322
           +GL  C +HD     EL+
Sbjct: 254 NGL--CKEHDYKGAFELM 269



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 91/198 (45%), Gaps = 3/198 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALC 63
           IE+M   N + S  T +  I+     G +D A +VF +      C   ++ YN LL  L 
Sbjct: 445 IEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLA 504

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      AY L R +  +G      TY  L++  C++G    A + + +M   G +P   
Sbjct: 505 KANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEI 564

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMI--KQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
             ++++      G  E A QM++ +   ++ +  D+ ++ ++I  +C+S   E  V +  
Sbjct: 565 TMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLE 624

Query: 182 SVCKLGLCADVSTYKILI 199
            +   G+   ++T+ +LI
Sbjct: 625 RMISAGIVPSIATWSVLI 642



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFN--KCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T+++II  + K G  + A ++ +   C     +  V+ Y ++++ LC          L+ 
Sbjct: 565 TMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLE 624

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           RMI  G VP   T+++L+N +     +R   +F
Sbjct: 625 RMISAGIVPSIATWSVLINCFILDDIVRAHDQF 657


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 35/323 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L       +++I  + ++G++  A+E+ +K     C   V+ YN++L  LC+ KL
Sbjct: 351 MKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKL 410

Query: 68  FHGAYALIRRMIRKGFV-----------------------------------PDKRTYAI 92
              A AL   M+ +G V                                   PD  TY I
Sbjct: 411 LADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNI 470

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++ +C + +M +A E   EM  +   P      +LV G  N G++  A ++ ++MI++G
Sbjct: 471 LIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG 530

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
               L T N++I+  C+SG++    E    +   G+  D  TY  LI    K   +D+AF
Sbjct: 531 IKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAF 590

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L++ +   G +P    Y  I+ G  R+G+  +A     +M  +G  P+R  YT LI   
Sbjct: 591 FLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGY 650

Query: 273 GRGGRFVEAANYLVEMTEMGLTP 295
                  EA  +  EM + G  P
Sbjct: 651 VSQDNLKEAFRFHDEMLQRGFVP 673



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 140/321 (43%), Gaps = 2/321 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T ++++     VS    + ++    K G VD A EV+N+      +  V   N ++ ALC
Sbjct: 137 TFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALC 196

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +          +  M +KG   D  TY  L+NA+C  G + EA E +  MS KG  P + 
Sbjct: 197 KDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLF 256

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL   G    AK + N+M+  G   D  T+N+L+   C++       +++  +
Sbjct: 257 TYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  D+ ++  LI   S+ G +D+A     ++   G  P   +Y  +I G  R G  
Sbjct: 317 LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMM 376

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +A     +M  +G   +   Y  ++    +     +A     EM E G+ P    F  +
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436

Query: 304 TDGLKNCGKHDLAEKIELLEV 324
             G  +C + ++ + + L  +
Sbjct: 437 IHG--HCKEGNMGKALSLFGI 455



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 17/247 (6%)

Query: 66  KLFHGAYALIRRMIRKGFVP-----------------DKRTYAILVNAWCSSGKMREAQE 108
           K    A  LI RMIR+  V                  D   + +L+ ++  + K+ E  +
Sbjct: 77  KRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTD 136

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             + +  KGF   +   + L+ GL+  G+++ A ++ N++ + G  L++ T N ++  +C
Sbjct: 137 TFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALC 196

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K  +++        + + G+ AD+ TY  LI A  + G++ EAF +++++   G KP   
Sbjct: 197 KDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLF 256

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G+ ++G++  A   F+EM   G  P+   Y  L+    R   F+EA +   +M
Sbjct: 257 TYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 289 TEMGLTP 295
              G++P
Sbjct: 317 LHRGVSP 323



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%), Gaps = 8/301 (2%)

Query: 12  NLSVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           ++ +SP T +   L++E    +  ++ A ++F+          ++ ++SL+         
Sbjct: 283 SIGLSPDTTTYNTLLVESCRNNNFLE-AKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A    R M   G VPD   Y IL+N +C +G M EA E   +M ++G    V   + +
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL     L  A  + ++M+++G V D  TF +LI   CK G +   + ++  + +  +
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI 461

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQFDDA 246
             D+ TY ILI    K   +++A  L + ++    K FP+   YA ++ G    G   +A
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMIS--RKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           F  + EM  KG  P       +I    R G   +A  +L +M   G+ P S  ++ + +G
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 307 L 307
            
Sbjct: 580 F 580



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 129/304 (42%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G    A  VFN+  +         YN+LL   C    F  A  +   M
Sbjct: 257 TYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +++ L+     +G + +A  + ++M   G  P      +L+ G    G +
Sbjct: 317 LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMM 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ +KM++QG  LD+  +N+++  +CK   +     ++  + + G+  D  T+  L
Sbjct: 377 SEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTL 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + +A  L   + +   KP    Y  +I G  +  + + A   ++EM  +  
Sbjct: 437 IHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKI 496

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +L+      G   EA     EM   G+ P     + V  G   C   DL++ 
Sbjct: 497 FPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGY--CRSGDLSKA 554

Query: 319 IELL 322
            E L
Sbjct: 555 DEFL 558



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 121/293 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GL+  A EV N  +    +  +  YN+++  LC+   +  A  +   M
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  L+   C +    EA++   +M  +G +P +     L+      G+L
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A      M   G V D   +  LI   C++G +   +E+   + + G   DV  Y  +
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K  ++ +A  L   +VE G  P    +  +I G  + G    A   F  M  K  
Sbjct: 402 LNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNI 461

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P+   Y +LI    +     +A     EM    + P    + ++ +G  N G
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLG 514



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 7/290 (2%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           +V++ + + + C   N     L+++ L+ +  + +  +      + + RKGF+       
Sbjct: 100 IVESLISMSSTCGVDN-----LVFDLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACN 154

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L+      G +  A E   E++  G    V   +++V  L     ++  K  +  M ++
Sbjct: 155 SLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQK 214

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+N+LI   C+ G +    E+  S+   GL   + TY  +I  + K G    A
Sbjct: 215 GIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRA 274

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             + + ++  G  P  + Y  ++    R   F +A   FS+M  +G  P+   ++ LI +
Sbjct: 275 KGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGV 334

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             R G   +A  Y  +M   GL P +  + ++ +G   C    ++E +E+
Sbjct: 335 SSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY--CRNGMMSEALEI 382



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 74/138 (53%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + + G +  A E   K  +       + YN+L+    + +    A+ LI +M
Sbjct: 537 TCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKM 596

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY +++N +C  G+M+EA+  L++M ++G +P       L+ G ++   L
Sbjct: 597 ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNL 656

Query: 139 ESAKQMVNKMIKQGFVLD 156
           + A +  ++M+++GFV D
Sbjct: 657 KEAFRFHDEMLQRGFVPD 674


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 139/286 (48%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ F ++G + +A+++ ++  A  C   V+ YN+ L  LC+ K+F  A  L   M+ 
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G VPD  T+  L+  +C  G M +A    + M      P     + L+ G   AG +  
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGR 555

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK++ + MI++  + D  ++ +++   C SG +   + +   + + G+  ++ T   LI 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              ++G + +A+  L  ++ +G  P    Y  +I G  +    + AF   +EM+ +G   
Sbjct: 616 GYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQF 675

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           N   Y +++      G+  EA   L +M E+G+ P    +  + +G
Sbjct: 676 NIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 121/243 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G +D A+ +F      N +   + YN+L+   C+      A  L   M
Sbjct: 504 TFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IRK  +PD  +Y  ++N +CSSG + EA     +M +KG  P +   + L++G   +G +
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + ++KMI  G + D  ++N+LI+   K   +E    +   + K GL  ++ TY ++
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + EA ++L  ++E G  P  + Y+ +I G   +    +AF F  EM  +G 
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743

Query: 259 PPN 261
            P+
Sbjct: 744 VPD 746



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GLV+ A ++ N  ++   +  +L YN++L+ LC++  +  A  ++  M
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+  TY  L+   C    + EAQE   EMS +G  P +     L+  L   G+L
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A     +M + G V D   +  LI+  C++G +   ++M   +   G   DV TY   
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K  M  +A  L + +VE G  P    +  +I+G  + G  D A   F  M     
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  Y  LI    + G    A     +M    + P    +  V +G   C    L E 
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGF--CSSGLLPEA 591

Query: 319 IEL 321
           + L
Sbjct: 592 LNL 594



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 1/302 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE+++   L+ +  T + ++ E  +   +  A E+F++ +       ++ ++SL+  L  
Sbjct: 351 IEMLQ-LGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLAR 409

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A    R M R G VPD   Y IL++ +C +G + +A +   EM  +G    V  
Sbjct: 410 NGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVT 469

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +  + GL        A  + N+M+++G V D  TF +LI   CK G ++  + ++ ++ 
Sbjct: 470 YNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMV 529

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  L  D  TY  LI    KAG +  A  L  +++     P    Y  ++ G    G   
Sbjct: 530 RTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLP 589

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M  KG  PN      LI    R G   +A  YL +M   G+ P S  ++ + 
Sbjct: 590 EALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLI 649

Query: 305 DG 306
           DG
Sbjct: 650 DG 651



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 145/326 (44%), Gaps = 2/326 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  ++++   +SVS    + ++    + G VD A E++ +      +  V   N ++ AL
Sbjct: 208 EAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNAL 267

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ + F      +  M  KG   D  TY  L+NA+C  G + EA + L   S +G  P +
Sbjct: 268 CKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGL 327

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++ GL   G  + AK ++ +M++ G   +  T+N+L+  IC+   +    E++  
Sbjct: 328 LTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDE 387

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D+ ++  LI  +++ G + +A      +   G  P   +Y  +I G  R G 
Sbjct: 388 MSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA 447

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA     EM  +G   +   Y   +    +   F +A     EM E G+ P    F  
Sbjct: 448 LSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTT 507

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLRS 328
           +  G   C   ++ + + L E  +R+
Sbjct: 508 LIRGY--CKDGNMDKALNLFEAMVRT 531



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 19/267 (7%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT----------------- 89
           N +   L  ++++  L   +    A A I RM+RK  V   +                  
Sbjct: 130 NFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSGVSRVKVVESLISTCFYFGSVGLI 189

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +LV  +  + K+RE  E  Q +  KG +  +   + L+ GL+  G+++ A ++  +++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G  L++ T N ++  +CK  + E  +     +   G+ AD+ TY  LI A  + G+++
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TML 268
           EAF+LL++    G +P    Y  I+ G+ + G++D A     EM   G  PN   Y T+L
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLL 369

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTP 295
           + +C R    +EA     EM+  G+ P
Sbjct: 370 VEICRRDN-ILEAQEIFDEMSRRGVLP 395



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 2/111 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P + S   +I+ + K   ++ A  + N+      Q  ++ YN +L   C       A 
Sbjct: 638 IIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAE 697

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            ++R+MI  G  PD  TY+ L+N   S   M+EA  F  EM  +G  P  R
Sbjct: 698 QVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDDR 748


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 9/304 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T +++++   K G V+ A ++F    T+  C   V+ Y +++  LC+      A  L+  
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDL 161

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  P+  TY++LV   C +G+  +    LQEM+ +GF P V   + L+ GL  +  
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A ++V  MI+ G    + T+NSL+E  C+S +V+    +   + + G   DV  Y  
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD-----DAFCFFSE 252
           +I  + +   +D+A  LL  +V     P    Y+ II G+ +  + D     +A C   E
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 253 -MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            MK  G PPN   Y ++I    R  +  +A   L  M +  + P    F +V   L  C 
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL--CK 399

Query: 312 KHDL 315
            HDL
Sbjct: 400 SHDL 403



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LM       +  T S+++E   K G  D    +  + T    Q  V++YN+LL  LC+
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK 218

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A  L++ MIR G  P   TY  L+  +C S ++  A   +Q MS++G  P V  
Sbjct: 219 SRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVIN 278

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV------EFCVE 178
            + ++ GL     L+ A+ ++ +M+    V D+ T++++I+ +CK   V      E   E
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G   +  TY ++I  + +A    +A  LL  +++    P  S ++ +I  + 
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           +    D A+  F  M  +   PN   Y  LI    +GG  V+ A  + E+      P   
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE-VDKAVRVFELMVESFRPGVA 457

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLE 323
            ++ V DGL  CG   + E + ++E
Sbjct: 458 TYNSVLDGL--CGVGRIEEAVRMVE 480



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 14/315 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALI 75
            L+L++   G+HG    AV++F +      ++CV     Y SL+  LC+      AY L+
Sbjct: 4   ALNLLVRA-GQHG---QAVQLFRE------ERCVPNEFTYGSLIHGLCKAGKLDQAYELL 53

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  +G  P    +  ++   C +G+  +A  + + ++     P +   ++LV  L+ +
Sbjct: 54  DEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS 113

Query: 136 GYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           G +E A Q+   M      L ++ T+ ++I  +CK G+++  +E+   + + G C +V T
Sbjct: 114 GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVIT 173

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +L+  + KAG  D+ F LL  +   G +P   +Y  ++ G+ +  + D+A      M 
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  P    Y  L+ +  R  +   A   +  M+E G  P    ++ V  GL    + D
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293

Query: 315 LAEKIELLEVSLRSV 329
            A+ +    V+ R V
Sbjct: 294 DAQALLKQMVAARCV 308



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G +D A E+ ++         V ++N ++  LC+   F  A    + +
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTV 91

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGY 137
                 PD  T+ ILV+A   SG++ EA +  + M +     P V     ++ GL   G 
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK 151

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A ++++ M + G   ++ T++ L+E +CK+G  +    +   + + G   DV  Y  
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + K+  +DEA  L+  ++  G  P    Y  +++   R  Q D AF     M  +G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP+   Y  +I    R  R  +A   L +M      P    +  + DGL    + D   
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 318 KIE 320
           K+E
Sbjct: 332 KLE 334



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 136/312 (43%), Gaps = 43/312 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++E F +   VD A  +    +   C   V+ YN+++  LC       A AL+++M
Sbjct: 243 TYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQM 302

Query: 79  IRKGFVPDKRTYAILVNAWC------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +    VPD  TY+ +++  C      +  K+  A E L+ M   G  P      ++++GL
Sbjct: 303 VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------------ 180
             A   + A  ++ +MI    V DL +F+ +I ++CKS +++   +++            
Sbjct: 363 CRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNP 422

Query: 181 --YSVCKLGLCAD--------------------VSTYKILIPAVSKAGMIDEAFRLLHNL 218
             Y+    GL                       V+TY  ++  +   G I+EA R++  +
Sbjct: 423 VAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGM 482

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +     P  + Y  +I+G+ R    ++A+  F  ++ KG      VY +L+    +  R 
Sbjct: 483 IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRL 542

Query: 279 VEA---ANYLVE 287
            +A   AN L+E
Sbjct: 543 SDAHGVANKLIE 554



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 40/246 (16%)

Query: 19  TLSLIIEEFGKHGLVDN------AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           T S II+   K   VD       A E+        C      Y  ++  LC  +    A 
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK---------------- 116
           AL+RRMI    VPD  ++++++ + C S  +  A +    MS++                
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 117 ------------------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                              F P V   + ++ GL   G +E A +MV  MI +    D  
Sbjct: 433 SKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGA 492

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           ++ +LI  +C+   VE   E++ +V   G   +V  Y +L+  + K   + +A  + + L
Sbjct: 493 SYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552

Query: 219 VEDGHK 224
           +E G+K
Sbjct: 553 IEAGYK 558



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K   +M       +P   + +I+   K G VD AV VF +    + +  V  YNS+L  
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDG 465

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC V     A  ++  MI K   PD  +Y  L+   C    + EA E  Q +  KGF   
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           V   ++LV  L     L  A  + NK+I+ G+
Sbjct: 526 VGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 9/304 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T +++++   K G V+ A ++F    T+  C   V+ Y +++  LC+      A  L+  
Sbjct: 102 TFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDL 161

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  P+  TY++LV   C +G+  +    LQEM+ +GF P V   + L+ GL  +  
Sbjct: 162 MNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR 221

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A ++V  MI+ G    + T+NSL+E  C+S +V+    +   + + G   DV  Y  
Sbjct: 222 LDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNT 281

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD-----DAFCFFSE 252
           +I  + +   +D+A  LL  +V     P    Y+ II G+ +  + D     +A C   E
Sbjct: 282 VIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILE 341

Query: 253 -MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            MK  G PPN   Y ++I    R  +  +A   L  M +  + P    F +V   L  C 
Sbjct: 342 MMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL--CK 399

Query: 312 KHDL 315
            HDL
Sbjct: 400 SHDL 403



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 151/325 (46%), Gaps = 9/325 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LM       +  T S+++E   K G  D    +  + T    Q  V++YN+LL  LC+
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCK 218

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +    A  L++ MIR G  P   TY  L+  +C S ++  A   +Q MS++G  P V  
Sbjct: 219 SRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVIN 278

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV------EFCVE 178
            + ++ GL     L+ A+ ++ +M+    V D+ T++++I+ +CK   V      E   E
Sbjct: 279 YNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACE 338

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G   +  TY ++I  + +A    +A  LL  +++    P  S ++ +I  + 
Sbjct: 339 ILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLC 398

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           +    D A+  F  M  +   PN   Y  LI    +GG  V+ A  + E+      P   
Sbjct: 399 KSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE-VDKAVRVFELMVESFRPGVA 457

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLE 323
            ++ V DGL  CG   + E + ++E
Sbjct: 458 TYNSVLDGL--CGVGRIEEAVRMVE 480



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 146/315 (46%), Gaps = 14/315 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALI 75
            L+L++   G+HG    AV++F +      ++CV     Y SL+  LC+      AY L+
Sbjct: 4   ALNLLVRA-GQHG---QAVQLFRE------ERCVPNEFTYGSLIHGLCKAGKLDQAYELL 53

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  +G  P    +  ++   C +G+  +A  + + ++     P +   ++LV  L+ +
Sbjct: 54  DEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS 113

Query: 136 GYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           G +E A Q+   M      L ++ T+ ++I  +CK G+++  +E+   + + G C +V T
Sbjct: 114 GRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVIT 173

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +L+  + KAG  D+ F LL  +   G +P   +Y  ++ G+ +  + D+A      M 
Sbjct: 174 YSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMI 233

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  P    Y  L+ +  R  +   A   +  M+E G  P    ++ V  GL    + D
Sbjct: 234 RSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLD 293

Query: 315 LAEKIELLEVSLRSV 329
            A+ +    V+ R V
Sbjct: 294 DAQALLKQMVAARCV 308



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G +D A E+ ++         V ++N ++  LC+   F  A    + +
Sbjct: 32  TYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTV 91

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGY 137
                 PD  T+ ILV+A   SG++ EA +  + M +     P V     ++ GL   G 
Sbjct: 92  AGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK 151

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+ A ++++ M + G   ++ T++ L+E +CK+G  +    +   + + G   DV  Y  
Sbjct: 152 LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNT 211

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + K+  +DEA  L+  ++  G  P    Y  +++   R  Q D AF     M  +G
Sbjct: 212 LLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG 271

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP+   Y  +I    R  R  +A   L +M      P    +  + DGL    + D   
Sbjct: 272 CPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADW 331

Query: 318 KIE 320
           K+E
Sbjct: 332 KLE 334



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 136/312 (43%), Gaps = 43/312 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++E F +   VD A  +    +   C   V+ YN+++  LC       A AL+++M
Sbjct: 243 TYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQM 302

Query: 79  IRKGFVPDKRTYAILVNAWC------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +    VPD  TY+ +++  C      +  K+  A E L+ M   G  P      ++++GL
Sbjct: 303 VAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGL 362

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------------ 180
             A   + A  ++ +MI    V DL +F+ +I ++CKS +++   +++            
Sbjct: 363 CRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNP 422

Query: 181 --YSVCKLGLCAD--------------------VSTYKILIPAVSKAGMIDEAFRLLHNL 218
             Y+    GL                       V+TY  ++  +   G I+EA R++  +
Sbjct: 423 VAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGM 482

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +     P  + Y  +I+G+ R    ++A+  F  ++ KG      VY +L+    +  R 
Sbjct: 483 IHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRL 542

Query: 279 VEA---ANYLVE 287
            +A   AN L+E
Sbjct: 543 SDAHGVANKLIE 554



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 40/246 (16%)

Query: 19  TLSLIIEEFGKHGLVDN------AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           T S II+   K   VD       A E+        C      Y  ++  LC  +    A 
Sbjct: 313 TYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQAL 372

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK---------------- 116
           AL+RRMI    VPD  ++++++ + C S  +  A +    MS++                
Sbjct: 373 ALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGL 432

Query: 117 ------------------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                              F P V   + ++ GL   G +E A +MV  MI +    D  
Sbjct: 433 SKGGEVDKAVRVFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGA 492

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           ++ +LI  +C+   VE   E++ +V   G   +V  Y +L+  + K   + +A  + + L
Sbjct: 493 SYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKL 552

Query: 219 VEDGHK 224
           +E G+K
Sbjct: 553 IEAGYK 558



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 1/152 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K   +M       +P   + +I+   K G VD AV VF +    + +  V  YNS+L  
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDG 465

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC V     A  ++  MI K   PD  +Y  L+   C    + EA E  Q +  KGF   
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           V   ++LV  L     L  A  + NK+I+ G+
Sbjct: 526 VGVYNVLVNELCKKKRLSDAHGVANKLIEAGY 557


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 146/312 (46%), Gaps = 6/312 (1%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP  +  S +I  F K GL   A  V +  T    Q  V  Y  ++  LC+      A 
Sbjct: 111 ISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKAL 170

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M  KG  P   TY +L+N  C  G + +A +  + M +KG    V   + L+ GL
Sbjct: 171 DLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGL 230

Query: 133 LNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            N G L+ A ++ + +++ G  +  D+ TFN++I+ +CK G ++  VE+Y ++ + G   
Sbjct: 231 CNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFG 290

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++ T  ILI    K+G+ID+A  L   + + G  P  + Y+ +I G  +    + A   F
Sbjct: 291 NLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLF 350

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           S MKI G  P    Y  L+    +     +A     EM E    P +  F+++ DG    
Sbjct: 351 SRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKA 410

Query: 311 GKHDLAEKIELL 322
           G  D+    ELL
Sbjct: 411 G--DIHSAKELL 420



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+++  LC+ K    A  L+  M      P+  TY IL++  C  G++ EA   L 
Sbjct: 10  IVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLG 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG    V     L+ G  + G L+  K + ++M+++G   ++  ++ LI   CK G
Sbjct: 70  EMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                  + +++ + G+  DV TY  +I  + K G   +A  L   + E G +P    Y 
Sbjct: 130 LWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYN 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G   DAF  F  M  KG       Y  LI      G+  EA      + E 
Sbjct: 190 VLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLED 249

Query: 292 G--LTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  + P    F+ V  GL   G+ D A +I
Sbjct: 250 GNYVEPDVITFNTVIQGLCKEGRLDKAVEI 279



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 2/287 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+     + + II    K   ++ AV++  +    +C+     Y  L+  LC+   
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M RKG   D   Y+ L++ +CS G +   +    EM +KG +P V     
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G    A  +++ M ++G   D+ T+  +I  +CK G     ++++  + + G
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
                 TY +LI  + K G I +AF++   ++E G +     Y  +I G+   G+ D+A 
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 248 CFFSEMKIKGH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             FS +   G+   P+   +  +I    + GR  +A      M E G
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERG 287



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 119/266 (44%), Gaps = 2/266 (0%)

Query: 30  HGLVDNAVEVFNKC--TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           +G +D A+++F+         +  V+ +N+++  LC+      A  +   MI +G   + 
Sbjct: 233 NGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNL 292

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            T  IL+  +  SG + +A E  + +   G  P      +++ G      L  AK + ++
Sbjct: 293 FTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSR 352

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M   G    L  +N+L+ ++CK   +E    ++  + +     D  ++ I+I    KAG 
Sbjct: 353 MKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGD 412

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           I  A  LL+++ + G  P    Y+  I  + + GQ ++A   F  M   G  P+  VY  
Sbjct: 413 IHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDS 472

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGL 293
           LI   G      E  N L +M +MG+
Sbjct: 473 LIKGFGLNDEIEEVINLLRQMADMGV 498



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I E+ K G++D A+E++ +            Y+ ++   C++ + + A  L  RM
Sbjct: 294 TCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P    Y  L+ + C    + +A+   QEM +    P     ++++ G L AG +
Sbjct: 354 KISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDI 413

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SAK+++N M + G   D  T++S I  + K G++E     + S+   G+  D   Y  L
Sbjct: 414 HSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSL 473

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDG 222
           I        I+E   LL  + + G
Sbjct: 474 IKGFGLNDEIEEVINLLRQMADMG 497



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 3/192 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WK +  +    L  S  T S++I+ F K  +++ A  +F++         +  YN+L+ 
Sbjct: 314 LWKRVHKL---GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMA 370

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +LC+      A  L + M      PD  ++ I+++    +G +  A+E L +M   G  P
Sbjct: 371 SLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTP 430

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                   +  L   G +E AK   + MI  G   D   ++SLI+    + E+E  + + 
Sbjct: 431 DAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLL 490

Query: 181 YSVCKLGLCADV 192
             +  +G+  D+
Sbjct: 491 RQMADMGVILDL 502



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   LS +    + ++    K   ++ A  +F +    NC+   + +N ++    +   
Sbjct: 353 MKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGD 412

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            H A  L+  M + G  PD  TY+  +N     G+M EA+     M   G  P     D 
Sbjct: 413 IHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDS 472

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           L++G      +E    ++ +M   G +LDLE  NS++  +C S E
Sbjct: 473 LIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAE 517


>gi|356575965|ref|XP_003556106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 1 [Glycine max]
 gi|356575967|ref|XP_003556107.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like isoform 2 [Glycine max]
          Length = 480

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 137/290 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W+ ++ M    L  + +T +++I   G+ GL  N VE F K   FN +     YN++L 
Sbjct: 175 LWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVERFIKSKTFNFRPFKHSYNAILH 234

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  +  +     + ++M+  GF  D  TY I++ A    GK+ +    L EM   GF+P
Sbjct: 235 GLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKYRLGKLDQFHRLLDEMGRNGFSP 294

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + G    +  F +LI+ + ++G ++ C   +
Sbjct: 295 DFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLDACKYFF 354

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K     DV  Y ++I     AG I++A  +  +++     P    Y  II+G+   
Sbjct: 355 DEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDMISREQVPNVFTYNSIIRGLCMA 414

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           G+FD+A     EM+ KG  PN  VY  L +     G+  +A   + +MTE
Sbjct: 415 GKFDEACSMLKEMETKGCSPNSVVYNTLASCLRNAGKTADAHEVIRQMTE 464



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 123/306 (40%), Gaps = 35/306 (11%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  Y+ ++    E + F   + L+  MI KG     RT+ IL+     +G  +   E
Sbjct: 153 QHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGLAKNLVE 212

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
              +     F P     + ++ GLL     +  + +  +M+  GF  D+ T+N ++    
Sbjct: 213 RFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFPSDILTYNIVMYAKY 272

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G+++    +   + + G   D  T+ IL+  + K      A  LL+++ E G +P   
Sbjct: 273 RLGKLDQFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVL 332

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-----------------M 271
            +  +I G+ R G  D    FF EM      P+   YT++IT                 M
Sbjct: 333 HFTTLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVAGEIEKALEMYQDM 392

Query: 272 CGR------------------GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             R                   G+F EA + L EM   G +P S  ++ +   L+N GK 
Sbjct: 393 ISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLASCLRNAGKT 452

Query: 314 DLAEKI 319
             A ++
Sbjct: 453 ADAHEV 458



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 41/238 (17%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++G+      Y ++++ +    + +     + EM +KG     R  ++L++    AG   
Sbjct: 149 QEGYQHTVNAYHLVMSIYAECEEFKALWRLVDEMIEKGLPATARTFNILIRTCGEAGL-- 206

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            AK +V + IK     F     ++N+++  +    + +    +Y  +   G  +D+ TY 
Sbjct: 207 -AKNLVERFIKSKTFNFRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLDGFPSDILTYN 265

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I++ A  + G +D+  RLL                                    EM   
Sbjct: 266 IVMYAKYRLGKLDQFHRLL-----------------------------------DEMGRN 290

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           G  P+   + +L+ + G+G + + A N L  M EMG+ P    F  + DGL   G  D
Sbjct: 291 GFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLD 348



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 13  LSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + + P  L  + +I+   + G +D     F++     C+  V+ Y  ++           
Sbjct: 325 MGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMIKNECRPDVVAYTVMITGYVVAGEIEK 384

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  + + MI +  VP+  TY  ++   C +GK  EA   L+EM  KG +P     + L  
Sbjct: 385 ALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVYNTLAS 444

Query: 131 GLLNAGYLESAKQMVNKMIKQ 151
            L NAG    A +++ +M ++
Sbjct: 445 CLRNAGKTADAHEVIRQMTEK 465



 Score = 44.7 bits (104), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ A+E++    +      V  YNS++  LC    F  A ++++ M  KG  P+   Y
Sbjct: 380 GEIEKALEMYQDMISREQVPNVFTYNSIIRGLCMAGKFDEACSMLKEMETKGCSPNSVVY 439

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
             L +   ++GK  +A E +++M++K  +  +  R
Sbjct: 440 NTLASCLRNAGKTADAHEVIRQMTEKVKHADIHSR 474


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 35/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G ++ A  ++++  A      V+ YN+++   C     + A  + + M
Sbjct: 369 TFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEM 428

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF P+  T+ IL++ +   G +  A      M D    P      ++++GL  AG  
Sbjct: 429 LDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRS 488

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + + NK + QGFV     +N++I+   K G +     +Y  +C++G+     TY  L
Sbjct: 489 FEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSL 548

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ID A +LL+++   G K     Y  +I G  +R     A    +E++  G 
Sbjct: 549 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGL 608

Query: 259 PPNRPVYTMLIT-----------------MCGRG------------------GRFVEAAN 283
            PNR +Y  +IT                 M   G                  GR + A++
Sbjct: 609 SPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASD 668

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              EM   G+ P  R   ++ +GL N G+ + A KI
Sbjct: 669 IHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKI 704



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 134/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+  +  TL +II+   K G      ++FNK  +       + YN+++    +   
Sbjct: 463 MKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGN 522

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  + R M   G  P   TY  L++ +C    +  A + L +M  KG    ++    
Sbjct: 523 INLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGT 582

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      ++SA +++N++   G   +   +NS+I        VE  +++Y  +   G
Sbjct: 583 LIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEG 642

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY  LI  + K+G +  A  +   ++  G  P    +  +I G+  +GQF++A 
Sbjct: 643 IPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENAR 702

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               +M  K   P+  +Y  LI    + G   EA     EM + GL P +  +D++ +G
Sbjct: 703 KILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGLVPDNITYDILVNG 761



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 111/276 (40%), Gaps = 45/276 (16%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           PYN          II+ F K G ++ A  V+ +          + Y SL+   C+     
Sbjct: 509 PYNT---------IIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNID 559

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+  M RKG   D + Y  L++ +C    M+ A E L E+   G +P     + ++
Sbjct: 560 LALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMI 619

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY--------- 180
            G  N   +E A  +  KM+ +G   DL+T+ SLI+ + KSG + +  +++         
Sbjct: 620 TGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGIL 679

Query: 181 -----YSVCKLGLC---------------------ADVSTYKILIPAVSKAGMIDEAFRL 214
                ++V   GLC                       V  Y  LI    K G + EAFRL
Sbjct: 680 PDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRL 739

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFR-RGQFDDAFCF 249
              +++ G  P    Y  ++ G F+  G F     F
Sbjct: 740 HDEMLDRGLVPDNITYDILVNGKFKGDGNFSRDLTF 775



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 1/236 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L+R M   G++P + T+  ++ A    G + EA     +M + G +  +     L++
Sbjct: 212 ALSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMK 271

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G L SA  +VN++ + G V +  T++ LI+  CK+G +E   E Y  +   G+ +
Sbjct: 272 GYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRS 331

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V +   ++    K      AF + ++ +E G     + +  ++  + + G+ ++A   +
Sbjct: 332 SVYSLNSILEGYLKCQSWQNAFTMFNDALESGLANVFT-FNTLLSWLCKEGKMNEACNLW 390

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            E+  KG  PN   Y  +I    R      A     EM + G TP +  F ++ DG
Sbjct: 391 DEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDG 446



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 91/197 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  MK   L +  +    +I+ F K   + +A E+ N+           +YNS++   
Sbjct: 563 KLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPNRFIYNSMITGF 622

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +     A  L ++M+ +G   D +TY  L++    SG++  A +   EM  KG  P  
Sbjct: 623 KNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDD 682

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R   +L+ GL N G  E+A++++  M  +  +  +  +N+LI    K G ++    ++  
Sbjct: 683 RAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDE 742

Query: 183 VCKLGLCADVSTYKILI 199
           +   GL  D  TY IL+
Sbjct: 743 MLDRGLVPDNITYDILV 759



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 3/246 (1%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           +C  LYN  L  + E  +       ++   R G   D+  Y+I V+  C       A   
Sbjct: 158 ECTKLYNFPL-DIQEGNILEAEQHFLQAKAR-GVELDQEAYSIFVHLLCLKPNSGYALSL 215

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L+EM   G+ PP      ++   +  G +  A ++ + M+  G  ++L    SL++  C 
Sbjct: 216 LREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCM 275

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G +   + +   + + GL  +  TY +LI    K G I++AF     +   G +     
Sbjct: 276 QGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYS 335

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
              I++G  +   + +AF  F++    G        T+L  +C + G+  EA N   E+ 
Sbjct: 336 LNSILEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLC-KEGKMNEACNLWDEVI 394

Query: 290 EMGLTP 295
             G++P
Sbjct: 395 AKGISP 400



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 74/178 (41%)

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           +  G +  A+Q   +   +G  LD E ++  +  +C      + + +   +   G     
Sbjct: 169 IQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPE 228

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  +I A  K G + EA RL  ++V  G     ++   ++KG   +G    A    +E
Sbjct: 229 GTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNE 288

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +   G  PN+  Y++LI  C + G   +A  +  EM   G+       + + +G   C
Sbjct: 289 ISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKC 346


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G+VD A E+        C+  V+ YN LL AL     +     L+ +M
Sbjct: 261 TYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM 320

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TY+IL+   C  GK+ EA   L+ M +KG  P     D L+      G L
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  MI  G + D+  +N+++ T+CK+G+ +  +E++  + ++G   + S+Y  +
Sbjct: 381 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM 440

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+  +G    A  ++  +V +G  P    Y  +I  + R G  D AF    +M+    
Sbjct: 441 FSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEF 500

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +++    +  R  +A + L  M   G  P    + ++ +G+   G    AE 
Sbjct: 501 HPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYR--AEA 558

Query: 319 IEL 321
           +EL
Sbjct: 559 MEL 561



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 136/287 (47%), Gaps = 1/287 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  AV V      F  Q  V  YN+L+   C++     A  ++ RM  K F PD  TY I
Sbjct: 136 VPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNI 194

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++ + CS GK+  A + L ++      P V    +L++  +  G ++ A +++++M+ +G
Sbjct: 195 MIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG 254

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+N++I  +CK G V+   EM  ++   G   DV +Y IL+ A+   G  +E  
Sbjct: 255 LKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGE 314

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L+  +  +   P    Y+ +I  + R G+ ++A      MK KG  P+   Y  LI   
Sbjct: 315 KLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF 374

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            R GR   A  +L  M   G  P    ++ V   L   GK D A +I
Sbjct: 375 CREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 421



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 141/305 (46%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G VD A+++ ++  +   +  +  YN+++  +C+  +   A+ +IR +
Sbjct: 226 TYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNL 285

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y IL+ A  + GK  E ++ + +M  +  +P V    +L+  L   G +
Sbjct: 286 ELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKI 345

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M ++G   D  +++ LI   C+ G ++  +E   ++   G   D+  Y  +
Sbjct: 346 EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTV 405

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G  D+A  +   L E G  P  S Y  +   ++  G    A     EM   G 
Sbjct: 406 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGI 465

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  +I+   R G   +A   LV+M      P    +++V  G   C  H + + 
Sbjct: 466 DPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGF--CKAHRIEDA 523

Query: 319 IELLE 323
           I++L+
Sbjct: 524 IDVLD 528



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 144/312 (46%), Gaps = 15/312 (4%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   +D+A  V ++  + +     + YN ++ +LC       A  ++ +++   
Sbjct: 160 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDN 219

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY IL+ A    G + EA + L EM  +G  P +   + +++G+   G ++ A 
Sbjct: 220 CQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 279

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMYYSVCKLGLCADVSTYKIL 198
           +M+  +  +G   D+ ++N L+  +   G+ E       +M+   C      +V TY IL
Sbjct: 280 EMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCD----PNVVTYSIL 335

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G I+EA  LL  + E G  P    Y P+I    R G+ D A  F   M   G 
Sbjct: 336 ITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGC 395

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+   Y T+L T+C + G+  +A     ++ E+G +P S  ++ +   L + G     +
Sbjct: 396 LPDIVNYNTVLATLC-KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG-----D 449

Query: 318 KIELLEVSLRSV 329
           KI  L + L  V
Sbjct: 450 KIRALHMILEMV 461



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 45/303 (14%)

Query: 65  VKLFH-----GAY----ALIRRMIRKGF-------------------------------- 83
           +K+FH     G Y     L+  M+RKG+                                
Sbjct: 89  LKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILEK 148

Query: 84  --VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
              PD   Y  L+N +C   ++ +A   L  M  K F+P     ++++  L + G L+ A
Sbjct: 149 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++++++       + T+  LIE     G V+  +++   +   GL  D+ TY  +I  
Sbjct: 209 LKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRG 268

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K GM+D AF ++ NL   G +P    Y  +++ +  +G++++     ++M  +   PN
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 328

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y++LIT   R G+  EA N L  M E GLTP +  +D +       G+ D+A  IE 
Sbjct: 329 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA--IEF 386

Query: 322 LEV 324
           LE 
Sbjct: 387 LET 389



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 10/235 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LMK   L+    +   +I  F + G +D A+E      +  C   ++ YN++L  LC+
Sbjct: 352 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 411

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P+  +Y  + +A  SSG    A   + EM   G +P    
Sbjct: 412 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEIT 471

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A +++  M    F   + T+N ++   CK+  +E  +++  S+ 
Sbjct: 472 YNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMV 531

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG----------HKPFPSL 229
             G   + +TY +LI  +  AG   EA  L ++LV             H+ FP L
Sbjct: 532 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRINAISEYSFKRLHRTFPLL 586


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 134/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M 
Sbjct: 145 FNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMH 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A +   EM +KG  P       L+ G    G+++
Sbjct: 205 ASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 20/287 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FV----------PDKRTYAILVNA 96
           Y +++  LC  ++F  A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 22  YCAMIHFLCSHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITA 81

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +   G +R+A +  +   +  F  P      +++ L+   Y +       ++++ G+   
Sbjct: 82  YLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 141

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G +DE FRL  
Sbjct: 142 LYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS 201

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G  P    Y+ +I G+ +  + DDA   F EM  KG  PN   +T LI    + G
Sbjct: 202 AMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNG 261

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               A     +M    L P    ++ +  GL  C K DL +  +L++
Sbjct: 262 WVDLAMEIYKQMLSQSLLPDLVTYNALIYGL--CKKGDLKQAHDLID 306



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 37/259 (14%)

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G  P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+ G +  G L+           +GF L      S                   
Sbjct: 177 VVSYNTLMNGYIRLGDLD-----------EGFRLKSAMHAS------------------- 206

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                G+  DV TY +LI  + K   +D+A +L   ++E G  P    +  +I G  + G
Sbjct: 207 -----GVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNG 261

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             D A   + +M  +   P+   Y  LI    + G   +A + + EM+  GL P    + 
Sbjct: 262 WVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYT 321

Query: 302 LVTDGLKNCGKHDLAEKIE 320
            + DG   C + DL    E
Sbjct: 322 TLIDGC--CKEGDLDTAFE 338


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 143/297 (48%), Gaps = 2/297 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +  S +I+ F K G +  A E+  +          + Y SL+   C+      A 
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M+ KG  P+ RT+ IL+N +C +  + +  E  ++MS +G        + L+QG 
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G LE AK++  +M+ +    D+ ++  L++ +C +GE E  +E++  + K  +  D+
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y I+I  +  A  +D+A+ L  +L   G KP    Y  +I G+ ++G   +A   F +
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           M+  GH PN   Y +LI      G   ++A  + E+   G +  +    +V D L +
Sbjct: 553 MEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSD 609



 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 37/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +     S+II+   K G +DNA  +FN+      +  +++Y +L+   C    
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L+R MI++   PD   ++ L++ +   GK+REA+E  +EM  +G +P       
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L+ A  M++ M+ +G   ++ TFN LI   CK+  ++  +E++  +   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE------------------DGHKPFPSL 229
           + AD  TY  LI    + G ++ A  L   +V                   D  +P  +L
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 230 -----------------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                            Y  II GM    + DDA+  F  + +KG  P+   Y ++I   
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G   EA     +M E G +P    ++++     + G+ D  +  +L+E
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA--HLGEGDATKSAKLIE 586



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 122/263 (46%), Gaps = 2/263 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP T++   +I+ F K   +D A  + +   +  C   +  +N L+   C+  L     
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R+M  +G V D  TY  L+  +C  GK+  A+E  QEM  +   P +    +L+ GL
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G  E A ++  K+ K    LD+  +N +I  +C + +V+   +++ S+   G+  DV
Sbjct: 468 CDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDV 527

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY I+I  + K G + EA  L   + EDGH P    Y  +I+     G    +     E
Sbjct: 528 KTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEE 587

Query: 253 MKIKGHPPNRPVYTMLITMCGRG 275
           +K  G   +     M++ M   G
Sbjct: 588 IKRCGFSVDASTVKMVVDMLSDG 610



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A++ + ++I+ G+ PD  T++ L+N  C  G++ EA E +  M + G  P +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV GL   G +  A  ++++M++ GF  +  T+  +++ +CKSG+    +E+   
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  D   Y I+I  + K G +D AF L + +   G K    +Y  +I+G    G+
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      +M  +   P+   ++ LI    + G+  EA     EM + G++P +  +  
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 303 VTDGLKNCGKHDLAEKIELLEV 324
           + DG   C ++ L +   +L++
Sbjct: 358 LIDGF--CKENQLDKANHMLDL 377



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I      G V  A+E+ ++      +  ++  N+L+  LC       A  LI RM
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF P++ TY  ++   C SG+   A E L++M ++          +++ GL   G L
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  + N+M  +GF  D+  + +LI   C +G  +   ++   + K  +  DV  +  L
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA  L   +++ G  P    Y  +I G  +  Q D A      M  KG 
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC 383

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   + +LI    +     +      +M+  G+   +  ++ +  G    GK ++A++
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443

Query: 319 I 319
           +
Sbjct: 444 L 444



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+AV++F + T    +  ++ ++ L   +   K +     L ++M  KG   +  T +I+
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N  C   K+  A   + ++   G+ P       L+ GL   G +  A ++V++M++ G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              L T N+L+  +C +G+V   V +   + + G   +  TY  ++  + K+G    A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  + E   K     Y+ II G+ + G  D+AF  F+EM+IKG   +  +YT LI    
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFC 293

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             GR+ + A  L +M +  +TP    F  + D     GK   AE++
Sbjct: 294 YAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 134/306 (43%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++     +G V +AV + ++      Q   + Y  +L  +C+      A  L+R+M
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    D   Y+I+++  C  G +  A     EM  KGF   +     L++G   AG  
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++  MIK+    D+  F++LI+   K G++    E++  + + G+  D  TY  L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D+A  +L  +V  G  P    +  +I G  +    DD    F +M ++G 
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-- 316
             +   Y  LI      G+   A     EM    + P    + ++ DGL + G+ + A  
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 317 --EKIE 320
             EKIE
Sbjct: 479 IFEKIE 484


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 141/312 (45%), Gaps = 35/312 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K+  +++AVE+FN+      +  V+ YNSL+  LCE+  +  A  L+R M
Sbjct: 189 TYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++G  P+  T+  L++A+   GK+ EA+E  + M      P V     L+ GL   G L
Sbjct: 249 MKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRL 308

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+QM   M   G+  +  T+ +LI   CKS  VE   +++Y + + GL A+  TY +L
Sbjct: 309 DEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVL 368

Query: 199 IPAVSKAGMIDEAFRLLHNL------------------------VEDGHKPFPSL----- 229
           I      G  D A  + + +                        VE     F  +     
Sbjct: 369 IQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM 428

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  II+GM + G+ +DAF  F  +  KG  PN   YT +I+   R G   EA  
Sbjct: 429 DINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADA 488

Query: 284 YLVEMTEMGLTP 295
              +M E G  P
Sbjct: 489 LFKKMKEDGFLP 500



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ + SLL   C       A AL  +++  GF P+  TY  L++  C +  +  A E   
Sbjct: 152 LVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFN 211

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M D G  P V   + LV GL   G    A  ++  M+K+G   ++ TF +LI+   K G
Sbjct: 212 QMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVG 271

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    E+Y  + ++ +  DV TY  LI  +   G +DEA ++ + +  +G+ P    Y 
Sbjct: 272 KIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYT 331

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +  + +D    F EM  KG   N   YT+LI      GR   A     +M   
Sbjct: 332 TLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSR 391

Query: 292 GLTPISRCFDLVTDGL 307
              P  R ++++ DGL
Sbjct: 392 RAPPDIRTYNVLLDGL 407



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 126/265 (47%), Gaps = 5/265 (1%)

Query: 2   WKTIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           W   ++MK     + P   T + +I+ F K G +  A E++      +    V  Y +L+
Sbjct: 243 WLLRDMMKR---GIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             LC       A  +   M   G+ P++ TY  L++ +C S ++ +  +   EMS KG  
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
                  +L+QG    G  + A+++ N+M  +    D+ T+N L++ +C +G VE  + +
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMI 419

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + K  +  ++ TY I+I  + K G +++AF L  +L   G KP    Y  +I G  R
Sbjct: 420 FKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 479

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPV 264
           RG   +A   F +MK  G  PN  V
Sbjct: 480 RGFIHEADALFKKMKEDGFLPNESV 504



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A   + +M++ GF PD  T+  L++ +C   ++ +A     ++   GF P V     L+ 
Sbjct: 136 ASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIH 195

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L    +L  A ++ N+M   G   ++ T+NSL+  +C+ G       +   + K G+  
Sbjct: 196 CLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQP 255

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V T+  LI A  K G I EA  L   +++    P    Y  +I G+   G+ D+A   F
Sbjct: 256 NVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMF 315

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             M+  G+ PN   YT LI    +  R  +      EM++ GL   +  + ++  G    
Sbjct: 316 YLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLV 375

Query: 311 GKHDLAEKI 319
           G+ D+A+++
Sbjct: 376 GRPDVAQEV 384



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 112/252 (44%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F+ A  L  RM+    +P    +  L++      +        ++M   G +P +   ++
Sbjct: 63  FNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  +  +     A   + KM+K GF  DL TF SL+   C    +E  + ++  +  +G
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +V TY  LI  + K   ++ A  + + + ++G +P    Y  ++ G+   G++ DA 
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAA 242

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +M  +G  PN   +T LI    + G+ +EA      M +M + P    +  + +GL
Sbjct: 243 WLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGL 302

Query: 308 KNCGKHDLAEKI 319
              G+ D A ++
Sbjct: 303 CTYGRLDEARQM 314


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  122 bits (306), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 139/286 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++ +  K G   +A +VF++         ++ YN+L+  LC     + A  ++ +M
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY  L++ +C  GK+ +A    +++  +G +P +   ++LV G    G  
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +MV +M ++G      T+  LI+T  +S  +E  +++  S+ +LGL  DV TY +L
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G ++EA RL  ++VE   +P   +Y  +I G  + G    A     EM+ K  
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKEL 509

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            PN   Y  +I +  +  +  EA   + +M + G+ P +    L++
Sbjct: 510 APNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLIS 555



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 2/293 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++ + ++  + T F     V++Y +L+   C+      A  L   M + G V ++RTY
Sbjct: 177 GEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTY 236

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L+N    +G  ++  E  ++M + G  P +   + ++  L   G  + A Q+ ++M +
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   ++ T+N+LI  +C+  ++    ++   +   G+  ++ TY  LI      G + +
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L  +L   G  P    Y  ++ G  R+G    A     EM+ +G  P++  YT+LI 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              R     +A    + M E+GL P    + ++  G   C K  + E   L +
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGF--CIKGQMNEASRLFK 467



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 123/272 (45%), Gaps = 3/272 (1%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   CE      ++ L+  +   GF P+   Y  L++  C  G++ +A++   EM   G
Sbjct: 169 LIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLG 228

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                R   +L+ GL   G  +   +M  KM + G   +L T+N ++  +CK G  +   
Sbjct: 229 LVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAF 288

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +++  + + G+  ++ TY  LI  + +   ++EA +++  +  DG  P    Y  +I G 
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGF 348

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G+   A     ++K +G  P+   Y +L++   R G    AA  + EM E G+ P  
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSK 408

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
             + ++ D      + D  EK   L +S+  +
Sbjct: 409 VTYTILIDTF---ARSDNMEKAIQLRLSMEEL 437



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%), Gaps = 7/270 (2%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           LY  ++ +  + +  + + +    M+  GFVP    +  L+     S    +   F  E 
Sbjct: 96  LYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN 155

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K     V    +L++G   AG +E +  ++ ++ + GF  ++  + +LI+  CK GE+
Sbjct: 156 KSKVV-LDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP- 232
           E   ++++ + KLGL A+  TY +LI  + K G+  + F +   + EDG   FP+LY   
Sbjct: 215 EKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG--VFPNLYTYN 272

Query: 233 -IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++  + + G+  DAF  F EM+ +G   N   Y  LI    R  +  EA   + +M   
Sbjct: 273 CVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD 332

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           G+ P    ++ + DG   CG   L + + L
Sbjct: 333 GINPNLITYNTLIDGF--CGVGKLGKALSL 360



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 140/306 (45%), Gaps = 18/306 (5%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N  V  Q+L+L I  F +  +VDN     + C           +N LL  +     F+  
Sbjct: 102 NSYVQSQSLNLSISYFNE--MVDNGFVPGSNC-----------FNYLLTFVVGSSSFNQW 148

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           ++       K  V D  ++ IL+   C +G++ ++ + L E+++ GF+P V     L+ G
Sbjct: 149 WSFFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDG 207

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G +E AK +  +M K G V +  T+  LI  + K+G  +   EMY  + + G+  +
Sbjct: 208 CCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPN 267

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY  ++  + K G   +AF++   + E G       Y  +I G+ R  + ++A     
Sbjct: 268 LYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVD 327

Query: 252 EMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +MK  G  PN   Y  LI   CG  G+  +A +   ++   GL+P    ++++  G   C
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGV-GKLGKALSLCRDLKSRGLSPSLVTYNILVSGF--C 384

Query: 311 GKHDLA 316
            K D +
Sbjct: 385 RKGDTS 390



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 114/267 (42%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G ++ A ++F +            Y  L+  L +  +    + +  +M   G  P+  
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLY 269

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  ++N  C  G+ ++A +   EM ++G +  +   + L+ GL     L  A ++V++M
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   +L T+N+LI+  C  G++   + +   +   GL   + TY IL+    + G  
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             A +++  + E G KP    Y  +I    R    + A      M+  G  P+   Y++L
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTP 295
           I      G+  EA+     M E    P
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKNCEP 476



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 107/234 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ MK   ++ +  T + +I+ F   G +  A+ +     +      ++ YN L+   
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C      GA  +++ M  +G  P K TY IL++ +  S  M +A +    M + G  P V
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDV 443

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +  A ++   M+++    +   +N++I   CK G     +++   
Sbjct: 444 HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           + +  L  +V++Y+ +I  + K     EA RL+  +++ G  P  S+ + I + 
Sbjct: 504 MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRA 557


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    + G V +A+ V +      C   V+ YN LL A C+ + +  A  LI  M
Sbjct: 169 TYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 228

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  TY +L++  C  G + +A E L+ +   G  P     + +++GL +A   
Sbjct: 229 RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERW 288

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++V +M+++    +  TFN +I ++C+ G ++  +++   + K G  A++ TY  +
Sbjct: 289 GDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAI 348

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +   +D A  LL  +   G KP    Y  ++KG+    Q+ DA      M   G 
Sbjct: 349 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGC 408

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   +  LI    + G  V+A     +M + G TP S  +  +  GL    K D A
Sbjct: 409 LPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQA 466



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 160/321 (49%), Gaps = 1/321 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+LM+    + +  T +++++     G VD+A+E+     +  C+   + YN++L  LC 
Sbjct: 225 IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 284

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + +  A  L+  M+R+   P++ T+ +++ + C  G +++A + L++MS  G    +  
Sbjct: 285 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 344

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL     ++ A  +++KM   G   D+ T+N+L++ +C + +     E+  ++ 
Sbjct: 345 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMT 404

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   D  T+  LI  + + G++ +A  +   + + G  P    Y+ II G+ +  + D
Sbjct: 405 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLD 464

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F+EM  KG  P++ +Y +L           EA   + ++ + G++P +  ++ + 
Sbjct: 465 QALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAIL 523

Query: 305 DGLKNCGKHDLAEKIELLEVS 325
            GL   GK + A  I    VS
Sbjct: 524 LGLCRNGKTEFAIDIMAYMVS 544



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 131/277 (47%), Gaps = 1/277 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N   +  T +++I    + GL+  A+++  K +   C   ++ YN+++  LCE +   GA
Sbjct: 302 NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGA 361

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+ +M   G  PD  TY  L+   CS+ +  +A+E +  M+  G  P     + L+  
Sbjct: 362 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGF 421

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G +  A ++  +M  +G   +  T++++I  + K+ +++  +E++  +   G   D
Sbjct: 422 LCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD 481

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y++L   ++    I+EA + +  L + G  P   LY  I+ G+ R G+ + A    +
Sbjct: 482 -KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMA 540

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            M   G  P+   Y +LI      G   EA   L+++
Sbjct: 541 YMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 34/248 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +  + +  T + II    +   VD A+ + +K  ++ C+  ++ YN+LL  LC 
Sbjct: 330 LEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCS 389

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A  L+  M + G +PD  T+  L+   C  G M +A E  ++M DKG  P    
Sbjct: 390 AAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSIT 449

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-------------------LET------ 159
              ++ GL  A  L+ A ++ N+M  +GF  D                   ++T      
Sbjct: 450 YSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQD 509

Query: 160 ---------FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                    +N+++  +C++G+ EF +++   +   G   D  TY ILI  ++  G ++E
Sbjct: 510 SGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNE 569

Query: 211 AFRLLHNL 218
           A  LL  L
Sbjct: 570 ARELLIKL 577



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 142/337 (42%), Gaps = 45/337 (13%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++ +  + G  D+A  V   C        V+ Y +L    C       A  ++  M  + 
Sbjct: 109 LVRDLCRRGRPDDAERVVGACGP---AATVVAYGALTDGYCRAGRLGDARRVVGGMPVQ- 164

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L++  C  G++R+A   L +M  +G  P V   ++L++          A 
Sbjct: 165 --PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 222

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM---------------YYSVCKLG 187
           ++++ M  +G   +  T+N L++ +C  G+V+  +E+               Y +V K G
Sbjct: 223 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK-G 281

Query: 188 LCA---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           LC+                     + +T+ ++I ++ + G++ +A +LL  + + G    
Sbjct: 282 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTAN 341

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  II G+  +   D A    S+MK  G  P+   Y  L+       ++V+A   + 
Sbjct: 342 IVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMD 401

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            MT+ G  P +  F+ +   L  C K  + + IE+ +
Sbjct: 402 NMTQNGCLPDNVTFNTLIGFL--CQKGLMVDAIEVFK 436



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC--TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T S II    K   +D A+E+FN+     FN  +   +Y  L   L +      A   +R
Sbjct: 449 TYSTIISGLAKATKLDQALELFNEMGHKGFNPDK---IYQLLAECLNDDDTIEEAIQTVR 505

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           ++   G  P    Y  ++   C +GK   A + +  M   G  P      +L++GL   G
Sbjct: 506 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 565

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           YL  A++++ K+  +  ++     NSLI++
Sbjct: 566 YLNEARELLIKLCSRDVLV-----NSLIKS 590



 Score = 45.8 bits (107), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L+ E       ++ A++   K          +LYN++L  LC       A  ++  M+  
Sbjct: 486 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 545

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           G +PD  TY IL+      G + EA+E L ++           RD+LV  L+ +  L
Sbjct: 546 GCMPDDLTYVILIEGLAYEGYLNEARELLIKLC---------SRDVLVNSLIKSEAL 593


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 142/314 (45%), Gaps = 3/314 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T + ++  + + G +  A +V    TAF  +  +  YN L   LC+   
Sbjct: 270 MKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGK 329

Query: 68  FHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
              A+ L   M + G V PD  TY  LV+A     +  +A   L+EM +KG    +   +
Sbjct: 330 VDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHN 389

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           ++V+GL   G LE A   +  M ++G   D+ T+N+LI+  CK+G V     +   + + 
Sbjct: 390 IIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS 449

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  D  T   L+  + K    +EA  LL    + G  P    Y  ++   F+  + + A
Sbjct: 450 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPA 509

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            C + EM  +   P+   Y  LI      G+  EA + L E+ EMGL P    ++++   
Sbjct: 510 LCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHA 569

Query: 307 LKNCGKHDLAEKIE 320
              C + DL +  +
Sbjct: 570 Y--CKEGDLEKAFQ 581



 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 139/288 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+M    L+    T + +I+   K G V  A  + ++      +      N+LL+ LC+
Sbjct: 408 LEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 467

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K +  A  L+R   ++GFVPD+ +Y  ++ A+    K   A     EM  +   P +  
Sbjct: 468 EKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIST 527

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L++GL   G L  A   +N++++ G V D  T+N +I   CK G++E   + +  + 
Sbjct: 528 YNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMV 587

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +     DV T   L+  +   G +++A +L  + VE G K     Y  +I+ + +    D
Sbjct: 588 ENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVD 647

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            A  FF++M+++G  P+   Y +L++     GR VEA   L ++ E G
Sbjct: 648 TALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 3/255 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  L  +     A   +  ++  G VPD  TY I+++A+C  G + +A +F  +M 
Sbjct: 528 YNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMV 587

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +  F P V   + L+ GL   G LE A ++    +++G  +D+ T+N+LI+ +CK  +V+
Sbjct: 588 ENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVD 647

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +  +  +   GL  DV TY +L+ A+S+AG   EA ++LH L E G K +   + P I
Sbjct: 648 TALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG-KLYGRFFYPSI 706

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           K      +        S+++  G+    ++  Y   I     GG+  EA   L EM + G
Sbjct: 707 KSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCIGGQLKEAKAVLDEMMQKG 766

Query: 293 LTPISRCFDLVTDGL 307
           ++  +  +  + +GL
Sbjct: 767 MSVDNSTYITLMEGL 781



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 116/259 (44%), Gaps = 1/259 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           +++ F+   A         +N L+   C       A + + +M   G  PD  TY  L+N
Sbjct: 193 SLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLN 252

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C  G + EA+  L  M  +G  P     + LV      G+++ A  +V  M   GF  
Sbjct: 253 AHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEP 312

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRL 214
           DL T+N L   +C++G+V+   ++   + +LG+ + DV TY  L+ A  K     +A  L
Sbjct: 313 DLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNL 372

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  + E G K     +  I+KG+ R GQ ++A      M  +G  P+   Y  LI    +
Sbjct: 373 LEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCK 432

Query: 275 GGRFVEAANYLVEMTEMGL 293
            G   +A   + EM   GL
Sbjct: 433 AGNVAKAFVLMDEMVRSGL 451



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 3/245 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  T+ +LV+  CS G + +A   L +M   G +P     + L+      G L  A+ +
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           + +M K+G V    T+N+L+    + G ++   ++  ++   G   D+ TY +L   + +
Sbjct: 267 LARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQ 326

Query: 205 AGMIDEAFRLLHNLVEDG-HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           AG +DEAF+L   + + G   P    Y  ++   F+  +  DA     EM+ KG   +  
Sbjct: 327 AGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLV 386

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + +++    R G+  EA   L  MTE GLTP    ++ + D   +C   ++A+   L++
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDA--SCKAGNVAKAFVLMD 444

Query: 324 VSLRS 328
             +RS
Sbjct: 445 EMVRS 449



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 3/183 (1%)

Query: 141 AKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV--EFCVEMYYSVCKLGLCADVSTYKI 197
           A Q+++   ++G V   L+  N+++  + +S     +  ++ ++S+  L L  +  T+ +
Sbjct: 155 AAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNL 214

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+      G + +A   L  +   G  P    Y  ++    R+G   +A    + MK +G
Sbjct: 215 LVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEG 274

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P R  Y  L++   R G   +A + +  MT  G  P    ++++  GL   GK D A 
Sbjct: 275 IVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAF 334

Query: 318 KIE 320
           K++
Sbjct: 335 KLK 337


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 133/288 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K+G +  A+ +  +    + Q  +++Y++L+  LC+      A  L  ++
Sbjct: 162 TYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQI 221

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G + D  TY  L++  CS G+ +E  + L +M  +  +P     ++L+  L   G +
Sbjct: 222 GERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRI 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ ++  M K+G   D+ T+N+L+E  C    V    E++  + K GL  DV  Y +L
Sbjct: 282 LEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVL 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  M+DEA  L   L      P  + Y  +I G+   G+         EM     
Sbjct: 342 IDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQ 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           PP+   Y +LI    + GR +EA   LV M + G+ P    ++ + DG
Sbjct: 402 PPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDG 449



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 143/310 (46%), Gaps = 4/310 (1%)

Query: 2   WKTIE--LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+ +   L K    +V P   T +++I+   K G +  A  V    +    +  ++ YN+
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNA 305

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C  +  H A  L  RM+++G  PD   Y +L++ +C +  + EA    +E+ +K 
Sbjct: 306 LMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKN 365

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + L+ GL N+G +   K+++++M       D+ T+N LI+ +CK G +   +
Sbjct: 366 LVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEAL 425

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   + K G+  ++ TY  ++        ++ A  + + +V+ G +P    Y  +I G 
Sbjct: 426 GVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGY 485

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +    D+A   F EM+ K   P+   Y  LI      GR       L EM + G +P  
Sbjct: 486 CKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDV 545

Query: 298 RCFDLVTDGL 307
             ++++ D  
Sbjct: 546 ITYNILLDAF 555



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 124/269 (46%), Gaps = 1/269 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN L+ ALC+      A  ++  M++KG  P+  TY  +++ +C    +  A++   
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P +   ++L+ G      ++ A  +  +M  +  + D+ ++NSLI+ +C  G
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +    E+   +C  G   DV TY IL+ A  K    D+A  L   +VE     F + +A
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVEGIWPDFYTNHA 584

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I+  + +  +   A      + + G  PN   YT+LI    + G F EA   L +M + 
Sbjct: 585 -IVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDN 643

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
              P +  F+++   L    + D AEK+ 
Sbjct: 644 DRPPDAITFEIIIGVLLQRNETDKAEKLR 672



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  ++ +N+++   C   +   A    + ++ +G++ D+ TY  L+N    +G+++ A  
Sbjct: 122 QPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALH 181

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            LQEM      P +     L+ GL   G++  A  + +++ ++G +LD  T+NSLI+  C
Sbjct: 182 LLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCC 241

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G  +   ++   + +  +  D  T+ ILI A+ K G I EA  +L  + + G KP   
Sbjct: 242 SVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIV 301

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +++G   R    +A   F+ M  +G  P+   Y +LI    +     EA     E+
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               L P    ++ + DGL N G+    +K+
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKL 392



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 132/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++E +     V  A E+FN+      +  VL YN L+   C+ K+   A  L + +
Sbjct: 302 TYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKEL 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K  VP   +Y  L++  C+SG++   ++ L EM      P V   ++L+  L   G +
Sbjct: 362 CNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRI 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M+K+G   ++ T+N++++  C    V    +++  + K GL  D+  Y +L
Sbjct: 422 LEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVL 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  M+DEA  L   +      P  + Y  +I G+   G+         EM   G 
Sbjct: 482 INGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQ 541

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+   Y +L+    +   F +A +   ++ E G+ P       + D L    K  +AE
Sbjct: 542 SPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAE 599



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 128/283 (45%), Gaps = 1/283 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +  A+ V         +  ++ YN+++   C     + A  +  RM
Sbjct: 407 TYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRM 466

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  PD   Y +L+N +C +  + EA    +EM  K   P +   + L+ GL N G +
Sbjct: 467 VKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRI 526

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              ++++++M   G   D+ T+N L++  CK+   +  + ++  + + G+  D  T   +
Sbjct: 527 PHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAI 585

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   +  A   L +L+  G  P    Y  +I  + + G F +A    S+M+    
Sbjct: 586 VDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDR 645

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           PP+   + ++I +  +     +A     EM   GL  I +  +
Sbjct: 646 PPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLN 688



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 127/291 (43%), Gaps = 2/291 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+           +++ LL A+  +  +  A +L  ++  KG  P   T+ I
Sbjct: 36  VDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +        A   L  +   G+ P +   + ++ G    G +  A      ++ QG
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           ++ D  T+ +LI  + K+G+++  + +   + K  +  ++  Y  LI  + K G + +A 
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDAL 215

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G       Y  +I G    G++ +     ++M  +   P+   + +LI   
Sbjct: 216 GLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDAL 275

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + GR +EA   L  M++ G  P    ++ + +G   C + ++ E  EL  
Sbjct: 276 CKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGY--CSRENVHEARELFN 324



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 106/250 (42%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A     RM+R    P    +  L+ A    G    A     ++  KG +P +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+    +  +   A  ++  ++K G+  +L TFN++I   C +G +   ++   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   D  TY  LI  +SK G I  A  LL  + +   +P   +Y+ +I G+ + G 
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGF 210

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA    S++  +G   +   Y  LI  C   GR+ E    L +M    + P    F++
Sbjct: 211 VSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNI 270

Query: 303 VTDGLKNCGK 312
           + D L   G+
Sbjct: 271 LIDALCKEGR 280



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 94/211 (44%), Gaps = 5/211 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  NL     + + +I+     G + +  E+ ++         V+ YN LL A C+ + 
Sbjct: 501 MRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQP 560

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A +L R+++ +G  PD  T   +V+  C   K++ A++ L+ +   G +P V+   +
Sbjct: 561 FDKAISLFRQIV-EGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTI 619

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L   G    A  +++KM       D  TF  +I  + +  E +   ++   +   G
Sbjct: 620 LINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARG 679

Query: 188 LC----ADVSTYKILIPAVSKAGMIDEAFRL 214
           L     +   ++ +  PA S    + E +R+
Sbjct: 680 LVNIEKSLNQSHNVFFPASSGFQSVTEFYRV 710


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 136/290 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    + G VD AVEVF   +  NC      Y++L+  LC       A +L+  M  +G
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEG 65

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+   + +L++A C  G +  A + +  M  KG  P     + LV GL   G L+ A 
Sbjct: 66  TFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAM 125

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++N+M+    V +  TF +L++   K G     V +  S+ + G   +  +Y  LI  +
Sbjct: 126 SLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGL 185

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  +   +L   +VE G KP   +Y+ +I G+ R G+ D+A  +  EMK KGH PN 
Sbjct: 186 FKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNS 245

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             Y+ L+      G   +A     EMT+        C+ ++ +GL   GK
Sbjct: 246 FTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGK 295



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 120/245 (48%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           +L   ++ ALC V     A  + R M  +  V D  TY+ L++  C+ G++ EA   L E
Sbjct: 1   MLLIPIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDE 60

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G  P     ++L+  L   G L  A ++V+ M  +G V +  T+NSL+  +C  G+
Sbjct: 61  MQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGK 120

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  + +   +       +  T+  L+    K G   +  R+L +L E G++     Y+ 
Sbjct: 121 LDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSS 180

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G+F+ G+ +     + EM  KG  PN  VY+ LI    R G+  EA  YL+EM   G
Sbjct: 181 LISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKG 240

Query: 293 LTPIS 297
            TP S
Sbjct: 241 HTPNS 245



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 113/254 (44%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P   +++I    K G +  A ++ +      C    + YNSL+  LC       A +L+
Sbjct: 69  NPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLL 128

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            RM+    VP+  T+  LV+ +   G+  +    L  + +KG+         L+ GL   
Sbjct: 129 NRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISGLFKE 188

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G  E   Q+  +M+++G   +   +++LI+ +C+ G+ +   E    +   G   +  TY
Sbjct: 189 GKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTY 248

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+    +AG I +A  +   + ++        Y+ +I G+ + G+  +A   + +M  
Sbjct: 249 SSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQMLS 308

Query: 256 KGHPPNRPVYTMLI 269
           +G   +   Y+ +I
Sbjct: 309 RGIKLDVVAYSSMI 322



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 99/209 (47%), Gaps = 2/209 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I    K G  ++ ++++ +     C+   ++Y++L+  LC       A   +  M
Sbjct: 177 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 236

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L+  +  +G + +A    +EM+D   N       +L+ GL   G L
Sbjct: 237 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 296

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC--KLGLCADVSTYK 196
           + A  +  +M+ +G  LD+  ++S+I   C +  VE  ++++  +      L  DV TY 
Sbjct: 297 KEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYN 356

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           IL+ A      +  A  +L+ +++ G  P
Sbjct: 357 ILLNAFCTKNSVSRAIDILNTMLDQGCDP 385



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 29/151 (19%), Positives = 70/151 (46%), Gaps = 2/151 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  + + G +  A+ V+ + T  +C    + Y+ L+  LC+      A  + ++M
Sbjct: 247 TYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWKQM 306

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--SDKGFNPPVRGRDLLVQGLLNAG 136
           + +G   D   Y+ +++ +C++  + +  +   +M   +    P V   ++L+       
Sbjct: 307 LSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCTKN 366

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            +  A  ++N M+ QG   D  T +  ++T+
Sbjct: 367 SVSRAIDILNTMLDQGCDPDFITCDIFLKTL 397


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 22/314 (7%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV++A  ++ +  A      V+ YN+L+  LC +     A  L+ +MI + 
Sbjct: 158 IIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILED 217

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   T++IL++A+C  GKM+EA+     M  +   P +   + L+ G      ++ AK
Sbjct: 218 INPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAK 277

Query: 143 QMVNKMIK--------------QGFVLDLETFNSLIETICKSGE----VEFCVEMYYSVC 184
            + N MIK              +    D+  +NSLI+ +CKSG     ++F  EM+Y   
Sbjct: 278 SIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYR-- 335

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   D+ TY  L+ A+ K   +D+A  LL  L + G +P    Y  +I G+ + G+  
Sbjct: 336 --GQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLK 393

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA   F ++ +KG+  +   Y  +I    + G F E    + +M + G +P ++  +++ 
Sbjct: 394 DAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIII 453

Query: 305 DGLKNCGKHDLAEK 318
             L + G++D A K
Sbjct: 454 RSLFDKGENDKAGK 467



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 15/253 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +  A  VF      + +  ++ YNSL+     V +   A ++   M
Sbjct: 224 TFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTM 283

Query: 79  IR--------------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           I+              K   PD   Y  L++  C SG+   A +F+ EM  +G  P +  
Sbjct: 284 IKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFT 343

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+  L    +++ A +++ K+  QG    + T+N LI  +CKSG ++   +++  + 
Sbjct: 344 YNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLL 403

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   DV TY  +I    K G+ DE   ++  + + G  P       II+ +F +G+ D
Sbjct: 404 VKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGEND 463

Query: 245 DAFCFFSEMKIKG 257
            A   F EM ++G
Sbjct: 464 KA-GKFREMIVRG 475



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 14/315 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G +  A+   +K  A   +   + Y +L+  LC+V     A   +RR+
Sbjct: 84  TFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRI 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD   Y  +++  C    + +A     EM  K   P V   + L+ GL     L
Sbjct: 144 DGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQL 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++KMI +     + TF+ LI+  CK G+++    ++  + K  +  ++ TY  L
Sbjct: 204 KDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSL 263

Query: 199 ------IPAVSKAG--------MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
                 +  V KA         M+DEA  L   +      P   +Y  +I G+ + G+  
Sbjct: 264 MDGHHLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTP 323

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A  F  EM  +G PP+   Y  L+    +     +A   L ++ + G+ P    ++++ 
Sbjct: 324 YALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILI 383

Query: 305 DGLKNCGKHDLAEKI 319
           +GL   G+   AEK+
Sbjct: 384 NGLCKSGRLKDAEKV 398



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 16/318 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS++I  + + G    +  VF            + + +L+  LC     H A     ++
Sbjct: 49  TLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKV 108

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  ++ +Y  L+N  C  G+ R A EFL+ +  K   P V   + ++ GL     +
Sbjct: 109 VAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLV 168

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M+ +     + T+N+LI  +C   +++  + + + +    +   V T+ IL
Sbjct: 169 NDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSIL 228

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG-----MFRRGQ---------FD 244
           I A  K G + EA  +   ++++  KP    Y  ++ G     + ++ +          D
Sbjct: 229 IDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVD 288

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F EM  K   P+  +Y  LI    + GR   A  ++ EM   G  P    ++ + 
Sbjct: 289 EAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLL 348

Query: 305 DGLKNCGKHDLAEKIELL 322
           D L  C  + + + IELL
Sbjct: 349 DAL--CKNYHVDKAIELL 364



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 109/252 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +  +L +L +   +    +L R+M   G   +  T +IL+N +   G+   +      + 
Sbjct: 15  FGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANIL 74

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG+         L++GL   G +  A    +K++ QGF L+  ++ +LI  +CK G+  
Sbjct: 75  KKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTR 134

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +E    +    +  DV  Y  +I  + K  ++++AF L   +V     P    Y  +I
Sbjct: 135 AALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLI 194

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+    Q  DA     +M ++   P    +++LI    + G+  EA N    M +  + 
Sbjct: 195 CGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVK 254

Query: 295 PISRCFDLVTDG 306
           P    ++ + DG
Sbjct: 255 PNIVTYNSLMDG 266



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/148 (21%), Positives = 67/148 (45%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           F  ++ ++ K+      V ++  +   GL +++ T  ILI   S+ G    +F +  N++
Sbjct: 15  FGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANIL 74

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G+      +  +IKG+  +G+   A  F  ++  +G   N+  Y  LI    + G+  
Sbjct: 75  KKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTR 134

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
            A  +L  +    + P    ++ + DGL
Sbjct: 135 AALEFLRRIDGKLVQPDVVMYNTIIDGL 162



 Score = 40.8 bits (94), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 3   KTIELM---KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K IEL+   K   +  S  T +++I    K G + +A +VF           V  YN+++
Sbjct: 359 KAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMI 418

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
              C+  LF    A++ +M   G  PD +   I++ +    G+  +A +F +EM  +G
Sbjct: 419 KGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGENDKAGKF-REMIVRG 475


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 139/298 (46%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++    K G V  A +V             ++YN+L+   C+V+   GA+ +  +M
Sbjct: 158 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 217

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+N  C    + +A++ + EM   G +P V   + L+     AG L
Sbjct: 218 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 277

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E    +++ M ++G   D+ +F S+++  CK+G++   V +   +    +  +   Y  +
Sbjct: 278 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 337

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  ++G  ++AF L+  +   G       Y  ++KG+ R  Q D+A      ++ +G 
Sbjct: 338 IDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 397

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDL 315
            P+   Y  +I+ C   G   +A   L EM + G+ P  R +  +   L + G+ HD+
Sbjct: 398 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 455



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 122/272 (44%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           +F +  + + +   + YN+L+  LC++++   A  L+  M + G  P   T+  L++A+ 
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
           ++G++ +    L +M  KG    V     +V+     G +  A  +++ MI +    + +
Sbjct: 273 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 332

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +NS+I+   +SG+ E    +   +   G+ A + TY +L+  + ++  IDEA  L++ L
Sbjct: 333 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 392

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G +P    Y  II     +G  D A     EM   G  P    Y  L++     GR 
Sbjct: 393 RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRV 452

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +      +M    + P S  + ++ D    C
Sbjct: 453 HDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 484



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 131/288 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  ++     T + +I    K  +V  A ++  +         V  +N+L+ A    
Sbjct: 215 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 274

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 + ++  M +KG   D  ++  +V A+C +GK+ EA   L +M  K   P  +  
Sbjct: 275 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 334

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++   + +G  E A  +V KM   G    + T+N L++ +C+S +++   E+ Y++  
Sbjct: 335 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 394

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  DV +Y  +I A    G  D+A  LL  + + G +P    Y  ++  +   G+  D
Sbjct: 395 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHD 454

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             C + +M  K   P+  +Y +++    R     + A+   EM+E G+
Sbjct: 455 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGI 502



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 6/286 (2%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E   K        C +L N     LC+      A  ++  ++  G VP    Y  L+N +
Sbjct: 146 ESLKKGVMLGAYTCSILLN----GLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 201

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C    +R A    ++M  +   P     + L+ GL     +  A+ +V +M K G    +
Sbjct: 202 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 261

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
           ETFN+LI+    +G++E C  +   + + G+ +DV ++  ++ A  K G I EA  +L +
Sbjct: 262 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 321

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++     P   +Y  II      G  + AF    +MK  G   +   Y +L+    R  +
Sbjct: 322 MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 381

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             EA   +  +   GL P    ++ +      C K D  + +ELL+
Sbjct: 382 IDEAEELIYTLRNQGLRPDVVSYNTIISAC--CNKGDTDKALELLQ 425



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 112/258 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  L        A  +   M+  G VP+  TY  +++     G +        +M 
Sbjct: 19  YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 78

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   ++L+ GL  AG ++  + ++++M       D  T++ L + + ++GE  
Sbjct: 79  HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESR 138

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++    K G+     T  IL+  + K G + +A ++L  LV  G  P   +Y  +I
Sbjct: 139 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 198

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +      AFC F +MK +   P+   Y  LI    +     +A + ++EM + G+ 
Sbjct: 199 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 258

Query: 295 PISRCFDLVTDGLKNCGK 312
           P    F+ + D     G+
Sbjct: 259 PSVETFNTLIDAYGTAGQ 276



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L    ++KG +    T +IL+N  C  GK+ +A++ L+ +   G  P     + L+ G 
Sbjct: 142 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 201

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                L  A  +  +M  +    D  T+N+LI  +CK   V    ++   + K G+   V
Sbjct: 202 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 261

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI A   AG +++ F +L ++ + G K     +  ++K   + G+  +A     +
Sbjct: 262 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 321

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   PN  VY  +I      G   +A   + +M   G++     ++L+  GL    +
Sbjct: 322 MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 381

Query: 313 HDLAEKI 319
            D AE++
Sbjct: 382 IDEAEEL 388



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 74/164 (45%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  ++N +I  + +SG+    ++++  +  +G+  +  TY  +I    K G ++  FRL 
Sbjct: 15  DAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLR 74

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++ DG KP    Y  ++ G+ R G+ D+      EM      P+   Y++L     R 
Sbjct: 75  DQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRT 134

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G      +   E  + G+   +    ++ +GL   GK   AE++
Sbjct: 135 GESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQV 178



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S S  T +L+++   +   +D A E+         +  V+ YN+++ A C 
Sbjct: 354 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 413

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L++ M + G  P  RTY  LV+A  S+G++ + +   Q+M  K   P    
Sbjct: 414 KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSI 473

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
             ++V   +          +  +M ++G   D
Sbjct: 474 YGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 505


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 125/264 (47%), Gaps = 2/264 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS  + + II+ F K G +D AV  + +  A      V+ Y SL+  LC+      A  +
Sbjct: 581 VSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMDGLCKNNRMDQALEM 640

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M  KG   D   Y  L++ +C    M  A     E+ ++G NP     + L+ G  N
Sbjct: 641 RDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNPSQPVYNSLISGFRN 700

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G + +A  +  KM+K G   DL T+ +LI+ + K G +    ++Y  +  +GL  D   
Sbjct: 701 LGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLYTEMQAVGLVPDEIM 760

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +++  +SK G   +  ++   + ++   P   +Y  +I G +R G  D+AF    EM 
Sbjct: 761 YTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEML 820

Query: 255 IKGHPPNRPVYTMLITMCGRGGRF 278
            KG  P+   + +L++  G+ G+F
Sbjct: 821 DKGILPDGATFDILVS--GKVGKF 842



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 140/335 (41%), Gaps = 41/335 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I+   K+    N +EV N+ T+ N +   ++Y +++  LC+V  
Sbjct: 508 LKPNNY-----TYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQ 562

Query: 68  FHGAYALIRRMIRK------------------------------------GFVPDKRTYA 91
              A  L+  MI +                                    G  P+  TY 
Sbjct: 563 TSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYT 622

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L++  C + +M +A E   EM +KG    +     L+ G      +ESA  + ++++++
Sbjct: 623 SLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEE 682

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G       +NSLI      G +   +++Y  + K GL  D+ TY  LI  + K G +  A
Sbjct: 683 GLNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILA 742

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   +   G  P   +Y  I+ G+ ++GQF      F EMK     PN  +Y  +I  
Sbjct: 743 SDLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAG 802

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             R G   EA     EM + G+ P    FD++  G
Sbjct: 803 HYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 837



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 141/311 (45%), Gaps = 3/311 (0%)

Query: 8   MKPYNLSV-SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           MK   L V S +T + +I    K G +++A+   ++  +      V+   SL+   C+  
Sbjct: 293 MKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNN 352

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L  +M  +G  P+  T+++L+  +  +G+M +A EF ++M   G  P V    
Sbjct: 353 DLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVH 412

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++QG L     E A ++ ++  + G   ++   N+++  +CK G+++   E+   +   
Sbjct: 413 TIIQGWLKGQKHEEALKLFDESFETGLA-NVFICNTILSWLCKQGKIDKATELLRKMESR 471

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  +V +Y  ++ A  +   +D A  +  N++E G KP    Y+ +I G F+     + 
Sbjct: 472 GIGPNVVSYNNVMLAHCRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNV 531

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTD 305
               ++M       N  VY  +I    + G+  +A   L  M E     +S   ++ + D
Sbjct: 532 LEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIID 591

Query: 306 GLKNCGKHDLA 316
           G    G+ D A
Sbjct: 592 GFIKEGEMDYA 602



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 127/294 (43%), Gaps = 7/294 (2%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILV 94
           A+EVF++      +   LLY+  + A C+      A +L+R M  K   VP + TY  ++
Sbjct: 251 ALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVI 310

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            A    G M +A  +  EM   G +  V     L+ G      L SA  +  KM  +G  
Sbjct: 311 LASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPS 370

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  TF+ LIE   K+GE+E  +E Y  +  LGL   V     +I    K    +EA +L
Sbjct: 371 PNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKL 430

Query: 215 LHNLVEDGHKPFPSLY--APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                E G     +++    I+  + ++G+ D A     +M+ +G  PN   Y  ++   
Sbjct: 431 FDESFETG---LANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAH 487

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLEVS 325
            R      A      M E GL P +  + ++ DG  KN  + ++ E +  +  S
Sbjct: 488 CRKKNMDLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSS 541



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 114/278 (41%), Gaps = 3/278 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N LL A  + +    A  ++ +M+  G +P        ++A      + EA+E    M 
Sbjct: 165 FNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMV 224

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +       LL++  L       A ++ ++ I++G   D   ++  ++  CK+  + 
Sbjct: 225 AIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLA 284

Query: 175 FCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               +   + +  LC     TY  +I A  K G +++A R    +V DG          +
Sbjct: 285 MANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSL 344

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  +      A   F +M+ +G  PN   +++LI    + G   +A  +  +M  +GL
Sbjct: 345 ITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGL 404

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLRSV 329
           TP       +  G     KH+ A K+  E  E  L +V
Sbjct: 405 TPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANV 442



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 5/207 (2%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF    R  + L+         + A  +VN+M++ G +  +   N  +  + +   +   
Sbjct: 157 GFEVNSRAFNYLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEA 216

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +  +G+  D  T ++L+ A  +     EA  +    +E G +P   LY+  ++ 
Sbjct: 217 KELYSRMVAIGVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQA 276

Query: 237 MFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT- 294
             +      A     EMK K    P++  YT +I    + G   +A  +  EM   G++ 
Sbjct: 277 CCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISM 336

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
            +     L+T    +C  +DL   ++L
Sbjct: 337 NVVAATSLITG---HCKNNDLGSALDL 360


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 134/289 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I      G   NA+ V ++     C   V+ Y  LL A C+   +  A  L+  M
Sbjct: 162 TCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 221

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P     +++++GL  A   
Sbjct: 222 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++ +M ++G   ++ TFN LI  +C+ G VE  +E+   + K G   +  +Y  L
Sbjct: 282 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPL 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A  K   +D+A   L  +V  G  P    Y  ++  + R G+ D A     ++K KG 
Sbjct: 342 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P    Y  +I    + G+  EA   L EM   GL P    +  +  GL
Sbjct: 402 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 450



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 146/305 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    + G VD+A+E      ++ C+   + YN +L  L
Sbjct: 216 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 275

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +  A  L+  M +KG  P+  T+ +L++  C  G +  A E L+++   G +P  
Sbjct: 276 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNS 335

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+        ++ A   ++ M+ +G   D+ ++N+L+  +C+SGEV+  VE+ + 
Sbjct: 336 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 395

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + +Y  +I  ++KAG   EA  LL+ +V  G +P    Y+ I  G+ R  +
Sbjct: 396 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 455

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +DA   F +++  G  PN  +Y  +I    +      A +    M   G  P    + +
Sbjct: 456 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 515

Query: 303 VTDGL 307
           + +GL
Sbjct: 516 LIEGL 520



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 118/240 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV  +   + C    L YN LL A C+ K    A A +  M
Sbjct: 302 TFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C SG++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 362 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M+ +G   D+ T++++   +C+   +E  +  +  V  +G+  +   Y  +
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K      A  L   ++ +G  P  S Y  +I+G+   G   +A     E+  +G 
Sbjct: 482 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGE 541



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           ++L+  LC       A A++  M+R+  VPD  TY IL+ A C     ++A + L EM D
Sbjct: 164 DTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRD 223

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P +   +++V G+   G ++ A + +  +   G   +  ++N +++ +C +   E 
Sbjct: 224 KGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWED 283

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             E+   + + G   +V T+ +LI  + + G+++ A  +L  + + G  P    Y P++ 
Sbjct: 284 AEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLH 343

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              ++ + D A  F   M  +G  P+   Y  L+T   R G    A   L ++ + G  P
Sbjct: 344 AFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAP 403

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +   ++ V DGL   GK    E +ELL
Sbjct: 404 VLISYNTVIDGLTKAGKTK--EALELL 428



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 2/211 (0%)

Query: 16  SPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP +LS   ++  F K   +D A+   +   +  C   ++ YN+LL ALC       A  
Sbjct: 332 SPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 391

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+ ++  KG  P   +Y  +++    +GK +EA E L EM  KG  P +     +  GL 
Sbjct: 392 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 451

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +E A +   K+   G   +   +N++I  +CK  E    ++++  +   G   + S
Sbjct: 452 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNES 511

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           TY ILI  ++  G+I EA  LL  L   G +
Sbjct: 512 TYTILIEGLAYEGLIKEARDLLDELCSRGEE 542



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 110/252 (43%), Gaps = 27/252 (10%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--GFNPPVRGR--------- 125
           R++     PD  T A L+    +SG+  EA+  L         +N  + G          
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAA 147

Query: 126 ----------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
                           D L++GL   G   +A  ++++M+++  V D+ T+  L+E  CK
Sbjct: 148 RRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 207

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
               +  +++   +   G   D+ TY +++  + + G +D+A   L NL   G +P    
Sbjct: 208 RSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVS 267

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  ++KG+    +++DA     EM  KG PPN   + MLI+   R G    A   L ++ 
Sbjct: 268 YNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 327

Query: 290 EMGLTPISRCFD 301
           + G +P S  ++
Sbjct: 328 KYGCSPNSLSYN 339


>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
          Length = 507

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 139/292 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ +E M    L VS +T  L++   G+ GL    VE F K + FN +     +N++L 
Sbjct: 201 MWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKSSNFNYRPFRNSFNAILH 260

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  ++ +     + ++MI +G  PD  TY +++ A     K+ +  + L EM   G  P
Sbjct: 261 TLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMGKNGLAP 320

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   +LL+  L       +A  ++N M   G V  +  F +LI+ + ++G +E C   +
Sbjct: 321 DLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFF 380

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     AG  DEA +   +++  G  P    Y  +I G+   
Sbjct: 381 DEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIV 440

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+FD A     +M+ +G  PN  VY+ L++     G+  EA N +  MT  G
Sbjct: 441 GEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEANNIIQYMTNKG 492



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 120/303 (39%), Gaps = 39/303 (12%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN +L    E       + L+  M  KG     RT+ +LV     +G  R   E   + 
Sbjct: 184 MYNLILKIFAECGELKAMWRLLEDMTDKGLPVSSRTFHLLVCTSGRAGLRRRLVERFIKS 243

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+  + P     + ++  LL        + +  KMI +G   D+ T+N ++       ++
Sbjct: 244 SNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKL 303

Query: 174 EFCVEMYYSVCKLGLCADVSTYKI-----------------------------------L 198
           +   ++   + K GL  D+ TY +                                   L
Sbjct: 304 DQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNL 363

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +S+AG ++        +V+ G +P    Y  +I G    G+FD+A  FF +M ++G 
Sbjct: 364 IDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQ 423

Query: 259 PPNRPVYTMLITMCGR--GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN  VYT    +CG    G F +A + L +M   G TP    +  +   L+N GK   A
Sbjct: 424 LPN--VYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGKDSEA 481

Query: 317 EKI 319
             I
Sbjct: 482 NNI 484


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 131/276 (47%), Gaps = 2/276 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ +N+++    +      A  L   M++KG VPD  TY  +V+A C +  M +A+
Sbjct: 228 CSPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAE 287

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M DKG  P     + ++ G   +G+ + + +M  KM  +G + D  TF+S + ++
Sbjct: 288 FVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSL 347

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G  +   E++  +   G   D+ +Y IL+   +  G   +   L H++ + G     
Sbjct: 348 CKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNC 407

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
                +I    +RG  D+A   F+EM+ +G  PN   Y+ LI+   R GR  +A     +
Sbjct: 408 HCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQ 467

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M  +G+ P +  +  +  G   C   DL +  E + 
Sbjct: 468 MISIGIEPNTAVYHSLIHGF--CMHGDLVKAKEFIS 501



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 132/280 (47%), Gaps = 2/280 (0%)

Query: 16  SPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  +S   +I  F K G V  A  +FN+         V  YNS++ ALC+ +    A  
Sbjct: 229 SPDVVSFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEF 288

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++R+M+ KG  PD  TY  +++ +  SG  +E+ +  ++M+ KG  P        +  L 
Sbjct: 289 VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLC 348

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  + A+++   M  +G + D+ +++ L+      G       +++S+   G+ ++  
Sbjct: 349 KHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCH 408

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
              ILI A +K GM+DEA  +   +   G +P    Y+ +I    R G+  DA   FS+M
Sbjct: 409 CINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQM 468

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              G  PN  VY  LI      G  V+A  ++ EM   GL
Sbjct: 469 ISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGL 508



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 145/303 (47%), Gaps = 2/303 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II      G V +A +VFN       +  ++ +NSL+   C V     A+ ++  M+
Sbjct: 516 FSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 575

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  T   LV+ +C SGK+ +     +EM  K   P     ++++ GLL AG   
Sbjct: 576 SVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTS 635

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +AK+M ++MI  G  +D++T+  L++ +C++   +  + +++ +  +    D++    +I
Sbjct: 636 AAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMI 695

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K    +EA  L   +   G  P  S Y  +I+ + + G  ++A   FS M+  G  
Sbjct: 696 NALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCA 755

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+  +   +I M  + G  V+A  Y+ ++    ++  +    L+     + GKH   E+I
Sbjct: 756 PSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGKH--REQI 813

Query: 320 ELL 322
           + L
Sbjct: 814 KFL 816



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 119/251 (47%), Gaps = 1/251 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           ++++I    K G++D A+ VF +      +  V+ Y++L+ A C +     A     +MI
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-PPVRGRDLLVQGLLNAGYL 138
             G  P+   Y  L++ +C  G + +A+EF+ EM  KG + P +     ++  L   G +
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + N +I  G    + TFNSLI+  C  G++E    +  ++  +G+  DV T   L
Sbjct: 530 MDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTL 589

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K+G ID+   L   ++    KP    Y  ++ G+ R G+   A   F EM   G 
Sbjct: 590 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGT 649

Query: 259 PPNRPVYTMLI 269
             +   Y +L+
Sbjct: 650 AVDIDTYKILL 660



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 9/294 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           + S+++  +   G   +   +F    +K    NC  C+   N L+ A  +  +   A  +
Sbjct: 374 SYSILLHGYATEGRFADMNNLFHSMADKGIVSNCH-CI---NILISAHAKRGMMDEAMLV 429

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M  +G  P+  TY+ L++A+C  G++ +A E   +M   G  P       L+ G   
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489

Query: 135 AGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            G L  AK+ +++M+ +G    ++  F+S+I ++C  G V    +++  V  +G    + 
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIV 549

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+  LI      G +++AF +L  +V  G +P       ++ G  + G+ DD    F EM
Sbjct: 550 TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREM 609

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             K   P    Y +++    R GR   A     EM + G       + ++  GL
Sbjct: 610 LHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGL 663



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 2/145 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +V   T  ++++   ++ L D A+ +F+K  A +C+  + + N+++ AL +V+    A  
Sbjct: 650 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEAND 709

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   +   G VP+  TY +++      G + EA      M   G  P  R  + +++ LL
Sbjct: 710 LFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLL 769

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLE 158
             G +  A   ++K+   G ++ LE
Sbjct: 770 QKGDIVKAGYYMSKV--DGTIISLE 792


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 142/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F + G VD A  +         +  ++ +N+++  LC+      A  +   M
Sbjct: 192 TYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEM 251

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  PD  +Y  LV+ +C +G + EA     EM+ KG  P V     L+  +  AG L
Sbjct: 252 AREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNL 311

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +V +M ++G  ++  TF +LI+  C++G ++  +     + +  +   V  Y +L
Sbjct: 312 ERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVL 371

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +DEA  L+H +   G KP    Y+ I+ G  + G  D AF    +M  KG 
Sbjct: 372 INGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGV 431

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ LI       R  +A     +M ++GL P    +  + DG  +C + ++ + 
Sbjct: 432 VPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDG--HCKEGNVQKA 489

Query: 319 IEL 321
           + L
Sbjct: 490 LSL 492



 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL- 110
           +L YN++L AL +  L   A  L+  M+R G  P+  TY ILV A C+ G+  EA   + 
Sbjct: 120 LLAYNAVLLALSDASL-PSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGVVG 178

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            +M   G  P V   + LV     AG +++A+++V  M + G    L TFN+++  +CK+
Sbjct: 179 DDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKA 238

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G +E   +M+  + + GL  D  +Y  L+    KAG + EA  +   + + G  P    +
Sbjct: 239 GRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTF 298

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I  M R G  + A     +M+ +G   N   +T LI    R G   +A   + EM E
Sbjct: 299 TSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRE 358

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             + P   C++++ +G    G+ D A ++
Sbjct: 359 CRIQPSVVCYNVLINGYCKLGRMDEAREL 387



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 146/316 (46%), Gaps = 5/316 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVF-NKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           V+P   T ++++      G  + A+ V  +      C   V+ YN+L+ A C       A
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAA 209

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+  M   G  P   T+  +VN  C +G+M +A++   EM+ +G  P     + LV G
Sbjct: 210 ERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSG 269

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              AG L  A  +  +M ++G V D+ TF SLI  +C++G +E  V +   + + GL  +
Sbjct: 270 YCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMN 329

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+  LI    + G +D+A   +  + E   +P    Y  +I G  + G+ D+A     
Sbjct: 330 EFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIH 389

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  P+   Y+ +++   + G    A     +M + G+ P +  +  +  GL  C 
Sbjct: 390 EMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGL--CE 447

Query: 312 KHDLAEKIELLEVSLR 327
           +  L +  EL E  L+
Sbjct: 448 ERRLGDACELFEKMLQ 463



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L ++  T + +I+ F ++G +D+A+    +      Q  V+ YN L+   C++  
Sbjct: 321 MRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGR 380

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  LI  M  KG  PD  TY+ +++ +C  G    A E  ++M  KG  P       
Sbjct: 381 MDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSS 440

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++GL     L  A ++  KM++ G   D  T+ +LI+  CK G V+  + ++  + K G
Sbjct: 441 LIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKG 500

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPSLYA 231
           +  DV TY +LI  +SK+    EA RLL  L  +   P                F S+ A
Sbjct: 501 VLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVA 560

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG   +G  + A   +  M  +    +  VY++LI    RGG  ++A ++  ++   
Sbjct: 561 -LLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRC 619

Query: 292 GLTPIS 297
           G +P S
Sbjct: 620 GFSPNS 625



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 145/317 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + +M+   +  S  T + ++    K G +++A ++F++          + YN+L+   
Sbjct: 211 RLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGY 270

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    H A A+   M +KG VPD  T+  L++A C +G +  A   + +M ++G     
Sbjct: 271 CKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNE 330

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G+L+ A   + +M +      +  +N LI   CK G ++   E+ + 
Sbjct: 331 FTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE 390

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  DV TY  ++    K G  D AF L   +++ G  P    Y+ +I+G+    +
Sbjct: 391 MEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERR 450

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA   F +M   G  P+   YT LI    + G   +A +   EM + G+ P    + +
Sbjct: 451 LGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSV 510

Query: 303 VTDGLKNCGKHDLAEKI 319
           + DGL    +   A+++
Sbjct: 511 LIDGLSKSARTKEAQRL 527



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 135/286 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    L+    + + ++  + K G +  A+ VF +         V+ + SL+ A+
Sbjct: 246 KMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAM 305

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A AL+ +M  +G   ++ T+  L++ +C +G + +A   ++EM +    P V
Sbjct: 306 CRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSV 365

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ G    G ++ A++++++M  +G   D+ T+++++   CK G+ +   E+   
Sbjct: 366 VCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRK 425

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K G+  D  TY  LI  + +   + +A  L   +++ G +P    Y  +I G  + G 
Sbjct: 426 MLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGN 485

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              A     EM  KG  P+   Y++LI    +  R  EA   L ++
Sbjct: 486 VQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531



 Score = 43.1 bits (100), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 51/105 (48%)

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           L + A  + + M+ + +  D   Y++L++  C  G + +A  F +++   GF+P      
Sbjct: 570 LMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTI 629

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            LV+GL   G    A  ++ +++    + D ET  +LI+   K G
Sbjct: 630 SLVRGLFEEGMTVEADNVIQELLNCCSLADAETSKALIDLNRKEG 674


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 131/274 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++NA E+F++         V+ YN+L+  LC+ +    A  L+ RM R G  P+  +Y
Sbjct: 270 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 329

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +CS G + +A     +M   G +P +   ++L+ G   A        MV +M  
Sbjct: 330 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 389

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G      T+  L++ + +S  +E   ++Y S+ K GL AD+  Y +LI  +   G + E
Sbjct: 390 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKE 449

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +L  +L E   KP   +Y  +I G  + G    A     EM   G  PN   Y   I 
Sbjct: 450 ASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIX 509

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +  +  ++ EA   L +M E+GL P    +++++
Sbjct: 510 ILCKDEKWTEAEVLLKDMIELGLKPSISIWNMIS 543



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 1/279 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K    + A  VFN+ T  N +  V  +  ++   CEV      + ++ +M   G  P+  
Sbjct: 129 KSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVV 187

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  L++  C +G +   ++   +M +           +L+ G    G  +   ++  KM
Sbjct: 188 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 247

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G V ++ T+NS+I   C  G++    E++  + + G+  +V TY  LI  + +   +
Sbjct: 248 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 307

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA RL+  +  DG  P    Y  +I G    G  D A   F++MK  G  P+   Y +L
Sbjct: 308 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 367

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           I             + + EM   GL+P    + ++ D L
Sbjct: 368 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDAL 406



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 2/289 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   ++  +  T +++I  F K GL  + +E++ K         V  YNS++   C    
Sbjct: 212 MGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 271

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A+ L   M  +G   +  TY  L+   C   ++ EA+  +  M   G +P +   + 
Sbjct: 272 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 331

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G  + G L+ A  + N+M   G    L T+N LI    ++       +M   +   G
Sbjct: 332 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 391

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L     TY IL+ A+ ++  I++AF++  ++ + G      +Y  +I G+   G   +A 
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 248 CFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F  +      PN  +Y TM+   C  G  +  A   L EM E G+ P
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSY-RALRLLKEMGENGMVP 499



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 1/268 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           VL++ +++ A    +L   A     +MI +G VP   T+  L+     S    +A     
Sbjct: 82  VLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 141

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E +       V    ++++G    GYL+   +++ +M + G   ++  + +LI+  CK+G
Sbjct: 142 E-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNG 200

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E   +++Y + +L + A+  TY +LI    K G+  +   L   +   G  P    Y 
Sbjct: 201 DIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYN 260

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I      G+ ++AF  F EM+ +G   N   Y  LI    +  R +EA   +  M   
Sbjct: 261 SMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRD 320

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL+P    ++ + DG  + G  D A  +
Sbjct: 321 GLSPNLISYNTLIDGYCSIGNLDKASSL 348



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +    + +I+   K+G ++   ++F K    +       Y  L+    ++ L
Sbjct: 177 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 236

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L  +M   G VP+  TY  ++   C+ GK+  A E   EM ++G    V   + 
Sbjct: 237 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 296

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL     +  A++++ +M + G   +L ++N+LI+  C  G ++    ++  +   G
Sbjct: 297 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 356

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               ++TY ILI   S+A        ++  +   G  P    Y  ++  + R    + AF
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 416

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +S M+  G   +  +Y +LI      G   EA+     + EM L P
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKP 464



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 136/322 (42%), Gaps = 3/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+     K  N+ +   +  ++I+   + G +D   EV  +         V++Y +L+  
Sbjct: 137 WRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDG 195

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+         L  +M     V ++ TY +L+N +   G  ++  E  ++M   G  P 
Sbjct: 196 CCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPN 255

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + ++    N G L +A ++ ++M ++G   ++ T+N+LI  +C+   V     +  
Sbjct: 256 VYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMC 315

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + GL  ++ +Y  LI      G +D+A  L + +   G  P  + Y  +I G     
Sbjct: 316 RMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAK 375

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                     EM+ +G  P++  YT+L+    R     +A      M + GL      + 
Sbjct: 376 NSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYG 435

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
           ++  GL  C   D+ E  +L +
Sbjct: 436 VLIHGL--CVVGDMKEASKLFK 455



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 82/194 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S S  T +++I  F +        ++  +  A       + Y  L+ AL     
Sbjct: 352 MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDN 411

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +   M + G V D   Y +L++  C  G M+EA +  + + +    P     + 
Sbjct: 412 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNT 471

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G    A +++ +M + G V ++ ++NS I  +CK  +      +   + +LG
Sbjct: 472 MIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELG 531

Query: 188 LCADVSTYKILIPA 201
           L   +S + ++  A
Sbjct: 532 LKPSISIWNMISKA 545


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 137/293 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G+V+ A E+    T+  C+  V+ YN LL A      +     L+  M
Sbjct: 254 TYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEM 313

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+K TY+IL+++ C  G++ EA   L+ M +K   P     D L+  L   G L
Sbjct: 314 FSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRL 373

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++ MI  G + D+  +N+++  +CK+G     +E++  +  +G   +VS+Y  +
Sbjct: 374 DLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTM 433

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+   G    A  ++  ++  G  P    Y  +I  + R G  ++A     +M+  G 
Sbjct: 434 ISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF 493

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P    Y +++    +  R  +A     EM E G  P    + L+ +G+   G
Sbjct: 494 RPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAG 546



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 126/268 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+++   C+V     A  ++ RM  +GF+PD  TY I++ + C+  K+  A   L 
Sbjct: 147 VFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLD 206

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++      P V    +L++  +  G +  A +++ +M+ +G + D+ T+N++I  +CK G
Sbjct: 207 QLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 266

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            VE   E+  S+   G   DV +Y IL+ A    G  DE  +L+  +   G +P    Y+
Sbjct: 267 MVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 326

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + R G+ D+A      M  K   P+   Y  LI+   + GR   A   +  M   
Sbjct: 327 ILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 386

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    ++ +   L   G  + A +I
Sbjct: 387 GCLPDIVNYNTILAALCKNGNANQALEI 414



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 132/289 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G ++ A+++  +  A      +  YN+++  +C+  +   A  LI  +
Sbjct: 219 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 278

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y IL+ A+ + GK  E ++ + EM  +G  P      +L+  L   G +
Sbjct: 279 TSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 338

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++  MI++    D  +++ LI  +CK G ++  + +   +   G   D+  Y  +
Sbjct: 339 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTI 398

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G  ++A  + + L   G  P  S Y  +I  ++  G    A      M  KG 
Sbjct: 399 LAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGI 458

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  LI+   R G   EA   L +M + G  P    +++V  GL
Sbjct: 459 DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 507



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 122/260 (46%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ V ++    NC   V+ Y  L+ A       + A  L+  M+ +G +PD  TY  ++ 
Sbjct: 201 ALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 260

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G +  A E +  ++ KG  P V   ++L++  LN G  +  +++V +M  +G   
Sbjct: 261 GMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 320

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T++ LI ++C+ G ++  + +   + +  L  D  +Y  LI A+ K G +D A  ++
Sbjct: 321 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 380

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++ +G  P    Y  I+  + + G  + A   F++++  G PPN   Y  +I+     
Sbjct: 381 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 440

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           G    A   +  M   G+ P
Sbjct: 441 GDRSRALGMVPAMISKGIDP 460



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   ++ A +V N+  A      ++ YN ++ +LC  +    A  ++ +++   
Sbjct: 153 VISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDN 212

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P   TY IL+ A    G + EA + L+EM  +G  P +   + +++G+   G +E A 
Sbjct: 213 CMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAA 272

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++  +  +G   D+ ++N L+      G+ +   ++   +   G   +  TY ILI ++
Sbjct: 273 ELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSL 332

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G IDEA  +L  ++E    P    Y P+I  + + G+ D A      M   G  P+ 
Sbjct: 333 CRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 392

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y  ++    + G   +A     ++  MG  P    ++ +   L +CG    A
Sbjct: 393 VNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 446



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 114/232 (49%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD   Y  +++ +C   ++  A + L  M  +GF P +   ++++  L N   L  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +++++    +  + T+  LIE     G +   +++   +   GL  D+ TY  +I  + K
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            GM++ A  L+ +L   G +P    Y  +++    +G++D+     +EM  +G  PN+  
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 324

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           Y++LI+   R GR  EA + L  M E  LTP +  +D +   L   G+ DLA
Sbjct: 325 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 1/227 (0%)

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C +GK  E+  FL+ + +KG+ P V     L++G  N   +E A + V ++++  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASR-VMEILESH 142

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+  +N++I   CK  ++E   ++   +   G   D+ TY I+I ++     +  A 
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +L  L+ D   P    Y  +I+     G  ++A     EM  +G  P+   Y  +I   
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G    AA  +  +T  G  P    ++++     N GK D  EK+
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKL 309



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T S   +I    K G +D A+ + +   +  C   ++ YN++L ALC+    + A 
Sbjct: 353 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQAL 412

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  ++   G  P+  +Y  +++A  S G    A   +  M  KG +P     + L+  L
Sbjct: 413 EIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCL 472

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E A  +++ M + GF   + ++N ++  +CK   ++  + M+  + + G   + 
Sbjct: 473 CRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNE 532

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNL 218
           +TY +LI  +  AG   EA  L ++L
Sbjct: 533 TTYILLIEGIGFAGWRTEAMELANSL 558



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 36/179 (20%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCV------------------------------ 52
           I+    K+G  + A+E+FNK     C   V                              
Sbjct: 398 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 457

Query: 53  -----LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                + YNSL+  LC   L   A  L+  M + GF P   +Y I++   C   ++ +A 
Sbjct: 458 IDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 517

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
               EM +KG  P      LL++G+  AG+   A ++ N +  +  V+  ++F  L +T
Sbjct: 518 GMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRD-VISQDSFKRLNKT 575


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 12/313 (3%)

Query: 6   ELM-KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCT--------AFNCQQCVLL 54
           ELM K   + + P   T  ++I    K   VD+A+EV  K +        + + +  V++
Sbjct: 326 ELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVI 385

Query: 55  YNSLLFALCEVKLFHGAYALIRRM-IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN+L+  LC+V        L+ RM  +KG  PD  TY  L++ +C +G++ + +E   EM
Sbjct: 386 YNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEM 445

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + +G  P V   + LV G+   G + SA     +  ++G   D  T+ +LI   C     
Sbjct: 446 NKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNF 505

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E  +E++  + K G   D   Y  LI   S+AG + +A  +L  L + G +P    Y  +
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTL 565

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  R  +F   F    EM+  G  P+   Y  LI    + G    A   + +M + G+
Sbjct: 566 IGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGV 625

Query: 294 TPISRCFDLVTDG 306
            P    +  V + 
Sbjct: 626 VPTVATYGAVINA 638



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 5/311 (1%)

Query: 16  SPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +P T++   +I+ F K G ++   E+F++         V+  N+L+  +C       A  
Sbjct: 416 APDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVN 475

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
                 R+G   D  TY  L+NA+C+     +A E   EM   G +P       L+ G  
Sbjct: 476 FFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFS 535

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            AG +  A  ++ ++ K G   D   +N+LI   C++ +     EM   + + GL  D  
Sbjct: 536 QAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTI 595

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI   SK G +  A +++  +++ G  P  + Y  +I      G  ++A   F +M
Sbjct: 596 TYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDM 655

Query: 254 KIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           K     PPN  +Y +LI    +  +   A + + +M   G+TP +  ++ +  GL++  +
Sbjct: 656 KAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRD--E 713

Query: 313 HDLAEKIELLE 323
            DL +  E ++
Sbjct: 714 KDLEKVFEFMD 724



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 9/302 (2%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM-------- 78
             + G  +   E+  K    + Q  V+ +  L+  +C+ +    A  ++ +M        
Sbjct: 315 LAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGG 374

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGY 137
           I     PD   Y  L++  C  G+ +E    ++ M S KG  P     + L+ G   AG 
Sbjct: 375 ISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGE 434

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E  K++ ++M K+G   ++ T N+L+  +C++G V   V  +    + G+  D  TY  
Sbjct: 435 IEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTA 494

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A       ++A  L + +++ G  P   +Y  +I G  + G+  DA    +E+K  G
Sbjct: 495 LINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG 554

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  LI    R  +F      L EM E GL P +  ++ +       G    A+
Sbjct: 555 IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQ 614

Query: 318 KI 319
           K+
Sbjct: 615 KV 616



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 125/278 (44%), Gaps = 10/278 (3%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS- 114
           NSLL  L     F+    L+ +M+     P+  T+ IL+N  C   ++ +A E L++MS 
Sbjct: 309 NSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSG 368

Query: 115 -------DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIET 166
                       P V   + L+ GL   G  +    ++ +M  Q G   D  T+N LI+ 
Sbjct: 369 GKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDG 428

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK+GE+E   E++  + K G+  +V T   L+  + + G +  A          G K  
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGD 488

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  +I        F+ A   F+EM   G  P+  VY  LI+   + GR  +A+  L 
Sbjct: 489 AVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLA 548

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEKIELLE 323
           E+ ++G+ P + C++ +  G     K H + E ++ +E
Sbjct: 549 ELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEME 586



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 1/236 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F      + A+E+FN+     C    ++Y +L+    +      A  ++  +
Sbjct: 491 TYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAEL 550

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  PD   Y  L+  +C + K     E L+EM + G  P     + L+      G L
Sbjct: 551 KKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDL 610

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCADVSTYKI 197
           + A++++ KMIK G V  + T+ ++I   C +G     +E++  +     +  +   Y I
Sbjct: 611 KFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNI 670

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           LI ++ K   +  A  L+ ++   G  P  + Y  I KG+      +  F F   M
Sbjct: 671 LINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRM 726



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 1/204 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F + G + +A  V  +      +   + YN+L+   C    FH  + +++ M   G
Sbjct: 530 LISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAG 589

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+     +G ++ AQ+ +++M   G  P V     ++      G    A 
Sbjct: 590 LKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAM 649

Query: 143 QMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           ++   M     V  +   +N LI ++CK+ +V+  V +   +   G+  + +TY  +   
Sbjct: 650 EIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKG 709

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKP 225
           +     +++ F  +  ++E    P
Sbjct: 710 LRDEKDLEKVFEFMDRMIEHACNP 733



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 9/179 (5%)

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +MIK G VL+    NSL+  + + G      E+   + ++ +  +V T+ ILI  +
Sbjct: 291 DLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHM 350

Query: 203 SKAGMIDEAFRLLHNLV---EDGH-----KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            K   +D+A  +L  +    E G      +P   +Y  +I G+ + G+  +       M+
Sbjct: 351 CKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMR 410

Query: 255 I-KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             KG  P+   Y  LI    + G   +      EM + G+ P     + +  G+   G+
Sbjct: 411 SQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGR 469



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 1/175 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +++ ++ M+   L     T + +I    K+G +  A +V  K         V  Y +++ 
Sbjct: 578 VFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVIN 637

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           A C     + A  + + M     VP +   Y IL+N+ C + K++ A   +++M   G  
Sbjct: 638 AYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVT 697

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           P     + + +GL +   LE   + +++MI+     D  T   L E +   GE+E
Sbjct: 698 PNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIE 752



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 25/249 (10%)

Query: 87  KRTYAILVNAWCS----SGKMREAQEFLQEM----SDKGFNPPVRGRDLLVQGLLNAGYL 138
           K TY  L N W S    SG++++A + + EM     D    P     D+L   LL     
Sbjct: 188 KNTY--LRNVWLSILLRSGRVKDALKVIDEMFESNDDSNCRPNDATGDILFSFLLKRERN 245

Query: 139 E---SAKQMVNKMIK---QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           E   S  ++VN ++K    G ++       LI  +C++ +     +++  + KLG   + 
Sbjct: 246 EELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLES 305

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +    L+  +++ G  +    L+  +VE   +P    +  +I  M +  + DDA     +
Sbjct: 306 AACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEK 365

Query: 253 M---KIKGH-----PPNRPVYTMLITMCGRGGRFVEAANYLVEM-TEMGLTPISRCFDLV 303
           M   K  G       P+  +Y  LI    + GR  E    +  M ++ G  P +  ++ +
Sbjct: 366 MSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCL 425

Query: 304 TDGLKNCGK 312
            DG    G+
Sbjct: 426 IDGFCKAGE 434



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T   +I  +  +G  + A+E+F    A +      ++YN L+ +LC+      A +L+  
Sbjct: 631 TYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMED 690

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  P+  TY  +         + +  EF+  M +   NP     ++L + L   G 
Sbjct: 691 MKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGE 750

Query: 138 LESAKQMV 145
           +E  K+ V
Sbjct: 751 IERLKKFV 758


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 140/292 (47%), Gaps = 3/292 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE---VKLFHGAYAL 74
            T ++ I    + G ++ A +      A+     V+ YN+L+   C+       + A A 
Sbjct: 201 NTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAF 260

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           ++ M+     P++ T+  L++ +C    +  A++  +EM  +G  P +   + L+ GL N
Sbjct: 261 MKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCN 320

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G LE A  + +KM+  G   ++ T+N+LI   CK   ++   +++  V K  L  +V T
Sbjct: 321 NGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVIT 380

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           +  +I A  K GM++E F L  +++++G  P  S Y  +I G+ R+     A    +EM+
Sbjct: 381 FNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEME 440

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            KG   +   Y +LI    +  +   A   L EM  +GL P    ++ + DG
Sbjct: 441 NKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDG 492



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 128/285 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K   V  A + F +      +  ++ YNSL+  LC       A  L  +M
Sbjct: 275 TFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKM 334

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY  L+N +C    M+EA +   ++S +   P V   + ++      G +
Sbjct: 335 VGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E    + + M+ +G + ++ T+N LI  +C+  +++   E+   +   GL  DV TY IL
Sbjct: 395 EEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNIL 454

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K      A +LL+ +   G KP    Y  ++ G    G+   A    + M+ +  
Sbjct: 455 IDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERK 514

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            PN   Y +LI    +  +   A   L EM E GL P    +D+V
Sbjct: 515 QPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 129/266 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M+   L  +  T + +I     +G ++ A+++++K      +  ++ YN+L+   
Sbjct: 294 KAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGF 353

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ K+   A  +   + ++  VP+  T+  +++A+C  G M E       M D+G  P V
Sbjct: 354 CKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNV 413

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ GL     L++AK+++N+M  +G   D+ T+N LI+ +CK+ +     ++   
Sbjct: 414 STYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNE 473

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +  LGL  +  TY  L+      G +  A  +   + ++  +P    Y  +IKG  +  +
Sbjct: 474 MFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINK 533

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTML 268
            + A    +EM  KG  PNR  Y ++
Sbjct: 534 LEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 143/324 (44%), Gaps = 5/324 (1%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K Y   +S  + + ++    K   + +   V+ +         +  +N  +  LC     
Sbjct: 157 KDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKL 216

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWC---SSGKMREAQEFLQEMSDKGFNPPVRGR 125
           + A   I  M   G  P+  TY  LV+ +C   S+GKM +A+ F++EM      P     
Sbjct: 217 NKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTF 276

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G      + +AK+   +M KQG   ++ T+NSLI  +C +G++E  ++++  +  
Sbjct: 277 NTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVG 336

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LGL  ++ TY  LI    K  M+ EA ++  ++ +    P    +  +I    + G  ++
Sbjct: 337 LGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEE 396

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            F   S M  +G  PN   Y  LI    R      A   L EM   GL      ++++ D
Sbjct: 397 GFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILID 456

Query: 306 GLKNCGKHDLAEKI--ELLEVSLR 327
           GL    K   AEK+  E+  + L+
Sbjct: 457 GLCKNDKSRNAEKLLNEMFNLGLK 480



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 129/290 (44%), Gaps = 5/290 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A E F +   +  +  +   N LL AL +         + + MI++    +  T+ I +N
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL---NAGYLESAKQMVNKMIKQG 152
             C +GK+ +A++ +++M   G +P V   + LV G     +AG +  A+  + +M+   
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  TFN+LI+  CK   V    + +  + K GL  ++ TY  LI  +   G ++EA 
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAI 328

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +V  G KP    Y  +I G  ++    +A   F ++  +   PN   +  +I   
Sbjct: 329 DLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAY 388

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            + G   E  +    M + G+ P    ++ +  GL  C K DL    ELL
Sbjct: 389 CKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGL--CRKQDLQAAKELL 436



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 110/223 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K  ++  A +VF+  +       V+ +N+++ A C+  +    ++L   M
Sbjct: 345 TYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSM 404

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G +P+  TY  L+   C    ++ A+E L EM +KG    V   ++L+ GL      
Sbjct: 405 LDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKS 464

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A++++N+M   G   +  T+N+L++  C  G+++  + +   + K     +V TY +L
Sbjct: 465 RNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVL 524

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           I    K   ++ A  LL+ ++E G  P  + Y  +   M  +G
Sbjct: 525 IKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLEKG 567



 Score = 67.8 bits (164), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 11/262 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L+ + L+ A  +    H AY    R    GF     +   L++A     K+ + +   +
Sbjct: 130 ALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYK 189

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +  +  +   ++ + GL  AG L  A+  +  M   G   ++ T+N+L++  CK G
Sbjct: 190 EMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRG 249

Query: 172 EV-------EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
                     F  EM  +     +C +  T+  LI    K   +  A +    + + G K
Sbjct: 250 SAGKMYKAEAFMKEMLAN----KICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLK 305

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I G+   G+ ++A   + +M   G  PN   Y  LI    +     EA   
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 285 LVEMTEMGLTPISRCFDLVTDG 306
             ++++  L P    F+ + D 
Sbjct: 366 FDDVSKQELVPNVITFNTMIDA 387


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 201 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 260

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 261 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 320

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++        Y  +I G+ + G+  DA     EM   G  
Sbjct: 321 DGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 380

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           PN   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 381 PNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 140 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 199

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 200 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 259

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 260 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 319

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 320 IDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 379

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P  R + ++ +    C K D+ +  +LL+
Sbjct: 380 KPNXRTYTMIINEF--CKKGDVWKGSKLLK 407



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 162 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 221

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  + M  +   P +   
Sbjct: 222 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITY 281

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 282 NTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 341

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 342 ENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWK 401

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 402 GSKLLKEMQRDGHVPSVVTYNVLM 425



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +   + ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 109 VLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 168

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M+  G   D+ T++ LI  +CK  +++   
Sbjct: 169 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 228

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 229 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 288

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 289 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDD 348

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G+   AEK+  E+L V L+
Sbjct: 349 VAYTALISGLCQEGRSVDAEKMLREMLSVGLK 380



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + +RM
Sbjct: 210 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRM 269

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 270 LSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 329

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  +  TY ++
Sbjct: 330 DTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMI 389

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 390 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 3/241 (1%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           ++ L+ A+  S  +R+A E  +   +  F  P      +++ L+   Y +        ++
Sbjct: 71  FSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXIL 130

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G +D
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           E FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T LI
Sbjct: 191 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 250

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRS 328
               + GR   A      M    L P    ++ +  GL  C K DL +   L+ E+S++ 
Sbjct: 251 DGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHHLIDEMSMKG 308

Query: 329 V 329
           +
Sbjct: 309 L 309



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D A E   +    N     + Y +L+  LC+
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQ 360

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  P+ RTY +++N +C  G + +  + L+EM   G  P V  
Sbjct: 361 EGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 420

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 421 YNVLMNG 427


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 37/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +     S+II+   K G +DNA  +FN+      +  +++Y +L+   C    
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     L+R MI++   PD   ++ L++ +   GK+REA+E  +EM  +G +P       
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L+ A  M++ M+ +G   ++ TFN LI   CK+  ++  +E++  +   G
Sbjct: 358 LIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE------------------DGHKPFPSL 229
           + AD  TY  LI    + G ++ A  L   +V                   D  +P  +L
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477

Query: 230 -----------------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                            Y  II GM    + DDA+  F  + +KG  P+   Y ++I   
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G   EA     +M E G +P    ++++     + G+ D  +  +L+E
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA--HLGEGDATKSAKLIE 586



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 137/282 (48%), Gaps = 2/282 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +  S +I+ F K G +  A E+  +          + Y SL+   C+      A 
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M+ KG  P+ RT+ IL+N +C +  + +  E  ++MS +G        + L+QG 
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G LE AK++  +M+ +    D+ ++  L++ +C +GE E  +E++  + K  +  D+
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y I+I  +  A  +D+A+ L  +L   G KP    Y  +I G+ ++G   +A   F +
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           M+  GH PN   Y +LI      G   ++A  + E+   G +
Sbjct: 553 MEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFS 594



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 131/262 (50%), Gaps = 2/262 (0%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A++ + ++I+ G+ PD  T++ L+N  C  G++ EA E +  M + G  P +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV GL   G +  A  ++++M++ GF  +  T+  +++ +CKSG+    +E+   
Sbjct: 178 ITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  D   Y I+I  + K G +D AF L + +   G K    +Y  +I+G    G+
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           +DD      +M  +   P+   ++ LI    + G+  EA     EM + G++P +  +  
Sbjct: 298 WDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTS 357

Query: 303 VTDGLKNCGKHDLAEKIELLEV 324
           + DG   C ++ L +   +L++
Sbjct: 358 LIDGF--CKENQLDKANHMLDL 377



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 133/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I      G V  A+E+ ++      +  ++  N+L+  LC       A  LI RM
Sbjct: 144 TFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRM 203

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF P++ TY  ++   C SG+   A E L++M ++          +++ GL   G L
Sbjct: 204 VETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSL 263

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  + N+M  +GF  D+  + +LI   C +G  +   ++   + K  +  DV  +  L
Sbjct: 264 DNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSAL 323

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA  L   +++ G  P    Y  +I G  +  Q D A      M  KG 
Sbjct: 324 IDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGC 383

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   + +LI    +     +      +M+  G+   +  ++ +  G    GK ++A++
Sbjct: 384 GPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKE 443

Query: 319 I 319
           +
Sbjct: 444 L 444



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+AV++F + T    +  ++ ++ L   +   K +     L ++M  KG   +  T +I+
Sbjct: 54  DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N  C   K+  A   + ++   G+ P       L+ GL   G +  A ++V++M++ G 
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              L T N+L+  +C +G+V   V +   + + G   +  TY  ++  + K+G    A  
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAME 233

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  + E   K     Y+ II G+ + G  D+AF  F+EM+IKG   +  +YT LI    
Sbjct: 234 LLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFC 293

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             GR+ + A  L +M +  +TP    F  + D     GK   AE++
Sbjct: 294 YAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEEL 339



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 134/306 (43%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ ++     +G V +AV + ++      Q   + Y  +L  +C+      A  L+R+M
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM 238

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +    D   Y+I+++  C  G +  A     EM  KGF   +     L++G   AG  
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +++  MIK+    D+  F++LI+   K G++    E++  + + G+  D  TY  L
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSL 358

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D+A  +L  +V  G  P    +  +I G  +    DD    F +M ++G 
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGV 418

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-- 316
             +   Y  LI      G+   A     EM    + P    + ++ DGL + G+ + A  
Sbjct: 419 VADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALE 478

Query: 317 --EKIE 320
             EKIE
Sbjct: 479 IFEKIE 484



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 136/317 (42%), Gaps = 28/317 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LM       + +T +++I  + K  L+D+ +E+F K +        + YN+L+   CE
Sbjct: 375 LDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCE 434

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L + M+ +   PD  +Y IL++  C +G+  +A E  +++        +  
Sbjct: 435 LGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ G+ NA  ++ A  +   +  +G   D++T+N +I  +CK G +     ++  + 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKME 554

Query: 185 KLGLCADVSTYKILI-------PAVSKAGMIDE---------------AFRLLHNLVEDG 222
           + G   +  TY ILI        A   A +I+E               A   L  +++ G
Sbjct: 555 EDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAG 614

Query: 223 HKP----FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           H+P    F +L  P    +       DA   F  MK  G+ PN   Y  +I     G   
Sbjct: 615 HEPDVFTFTTLLRPFC--LEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMI 672

Query: 279 VEAANYLVEMTEMGLTP 295
            +    L +M E G  P
Sbjct: 673 SQVPGVLDQMFERGCQP 689



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 17/260 (6%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +S  ++++    +G  + A+E+F K      +  + +YN ++  +C       A+
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   +  KG  PD +TY I++   C  G + EA    ++M + G +P     ++L++  
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAH 572

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           L  G    + +++ ++ + GF +D  T    + T+ +             + K G   DV
Sbjct: 573 LGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLAR-------------MLKAGHEPDV 619

Query: 193 STYKILIP--AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            T+  L+    + +   + +A  L  N+   G+KP    Y  +IKG+             
Sbjct: 620 FTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVL 679

Query: 251 SEMKIKGHPPNRPVYTMLIT 270
            +M  +G  PN    +  I+
Sbjct: 680 DQMFERGCQPNAVTKSTFIS 699



 Score = 45.4 bits (106), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 2/101 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWC--SSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
           A + + RM++ G  PD  T+  L+  +C   +  + +A    + M   G+ P V   + +
Sbjct: 603 ALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTV 662

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           ++GLLN   +     ++++M ++G   +  T ++ I  +CK
Sbjct: 663 IKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCK 703


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 149/323 (46%), Gaps = 10/323 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S    T S I++     G +  A++ F +  +  C    +L+N L+  LC+   
Sbjct: 131 MKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKANQ 188

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +I  M  +G VPD  TY  L++  C S +M EA++ L+ M  +   P +   + 
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNT 248

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G    A Q++ +MI+ G   D+ TFNSLI   C+  +++   E+ + + K G
Sbjct: 249 LIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH-LMKKG 307

Query: 188 LCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFD 244
           LCA ++ TY +LI  +  AG  +EA  LL  +  DG    P +  Y  +I    R  Q +
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELLSEM--DGRGILPDIITYNSLIGIFCRNFQIE 365

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            AF   + M  +G  P+   Y  L     +  RF EA   L  M + G  P    F+ + 
Sbjct: 366 QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLM 425

Query: 305 DGLKNCGKHDLAEKIELLEVSLR 327
           +GL  C    L E   LL V  R
Sbjct: 426 EGL--CCSRRLDEARHLLAVMRR 446



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 134/265 (50%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+L++  C+      A+ LI RMI+ G  PD  T+  L++ +C   K+ +A E L 
Sbjct: 243 LVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH 302

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P +   ++L+ GL +AG    A +++++M  +G + D+ T+NSLI   C++ 
Sbjct: 303 LMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNF 362

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E   ++   + + G+  D  +Y  L  A+ K+   DEAF LL N+ + G  P    + 
Sbjct: 363 QIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFN 422

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +++G+    + D+A    + M+  G  P    Y +L+T   + GR  +A   LV M   
Sbjct: 423 SLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSE 482

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G+ P+      +   L   GK DLA
Sbjct: 483 GIQPLVSSSGTIVHTLAREGKQDLA 507



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 122/249 (48%), Gaps = 2/249 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C    + YN+L+   C+      A+ L+  M  +G  PD  T++ +V A C++G +  A
Sbjct: 100 HCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRA 159

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            ++ +E  +    P     ++LV GL  A  L  A+QM+ +M ++G V D+ T+NSLI+ 
Sbjct: 160 MQYFRESVECA--PDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDG 217

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CKS  +E   ++  ++ K  +  ++ TY  LI    K G    A +L+  +++ G  P 
Sbjct: 218 LCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPD 277

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              +  +I G  ++ + D A      MK     PN   Y +LI+     GR  EA   L 
Sbjct: 278 VVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLS 337

Query: 287 EMTEMGLTP 295
           EM   G+ P
Sbjct: 338 EMDGRGILP 346



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 120/251 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F +   +D A EV +      C   ++ YN L+  LC+    + A  L+  M
Sbjct: 280 TFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEM 339

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +PD  TY  L+  +C + ++ +A +    M ++G  P       L   LL +   
Sbjct: 340 DGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERF 399

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++ M   G + +L TFNSL+E +C S  ++    +   + ++G     STY++L
Sbjct: 400 DEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVL 459

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + KAG +D+A  +L  +V +G +P  S    I+  + R G+ D A  +F ++     
Sbjct: 460 VTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAES 519

Query: 259 PPNRPVYTMLI 269
               P Y  L+
Sbjct: 520 KACDPSYQKLL 530



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 101/233 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + LMK    + +  T +++I      G  + A E+ ++         ++ YNSL+   
Sbjct: 299 EVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIF 358

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A+ +   M+ +G +PD  +Y  L  A   S +  EA   L  M D G  P +
Sbjct: 359 CRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNL 418

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++GL  +  L+ A+ ++  M + G      T+  L+  +CK+G V+   E+   
Sbjct: 419 FTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVM 478

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +   G+   VS+   ++  +++ G  D A      +V    K     Y  +++
Sbjct: 479 MVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLE 531


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II  + + G  + A+++F +   F C+  V +YN LL AL     F     L   M + G
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+  TY IL+ A C + ++  A +   EMS+KG  P       +V  L  AG ++ A+
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  +     F   +  +N+LI+ +CK G +E  +++   +   G+  +V +Y  +I ++
Sbjct: 235 ELAGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             +G ++ AF L   +   G       + P+IKG F RG+  +A   +  M   G  PN 
Sbjct: 290 CVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNV 349

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             Y  LI      G   EA     +M   G  P    + ++ DG    G
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 3/271 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I+     G +  A++++       C+  V+ YN+L+  LC       A  +  +
Sbjct: 315 HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQ 374

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G +P+  TY+IL++ +  SG +  A E    M   G  P V     +V  L     
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A  +V KM  +G   +  TFN+ I+ +C +G VE+ +++   +   G   +++TY  
Sbjct: 435 FDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A+ +    +EAF L   +     +P    Y  ++ G  R G   +A   F +  ++G
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG 554

Query: 258 HPPNRPVY-TMLITMCGRGGRFVEAANYLVE 287
             P+   Y TM+   C +G   V+ A  LVE
Sbjct: 555 TAPDSITYNTMIHAYCKQGK--VKIAAQLVE 583



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 140/305 (45%), Gaps = 7/305 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K+  VD A ++F + +   C    + Y +++ +LC+      A  L  R 
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR- 239

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               F P    Y  L++  C  G++  A + L EM D G +P V     ++  L  +G +
Sbjct: 240 ----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  +M  +G   ++ TF  LI+     G++   ++++  + + G   +V  Y  L
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++EA ++   +   G  P  + Y+ +I G  + G    A   ++ M   G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT ++ +  +   F +A + + +MT  G TP +  F+    GL  CG   +   
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGL--CGNGRVEWA 473

Query: 319 IELLE 323
           ++LLE
Sbjct: 474 MKLLE 478



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 7/299 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G +D+A E+     A   +  V +YN+L+  +C+      A  L+  M
Sbjct: 216 TYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  +Y+ ++N+ C SG +  A     +M  +G +  +     L++G    G L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +   MI+ G   ++  +N+LI  +C +G +E  +++   + + G   +V+TY IL
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +K+G +  A    + ++  G +P    Y  ++  + +   FD A     +M ++G 
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   +   I  +CG  GR   A   L  M   G  P    ++ + D L    K++ A
Sbjct: 451 TPNTMTFNTFIKGLCGN-GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G ++ A+++  +         V+ Y+ ++ +LC       A+AL  +M  +G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              +  T+  L+      GK+ EA +  + M   G  P V   + L+ GL + G LE A 
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+ ++M + G + ++ T++ LI+   KSG++    E +  +   G   +V TY  ++  +
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVL 429

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M D+A  L+  +  +G  P    +   IKG+   G+ + A      M+  G  PN 
Sbjct: 430 CKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNI 489

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y  L+    R  ++ EA     E+    L P    ++ V  G    G   + E ++L 
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM--MGEALQLF 547

Query: 323 EVSL 326
             +L
Sbjct: 548 GKAL 551



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 129/307 (42%), Gaps = 2/307 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +S   II      G V+ A  +F +     C   +  +  L+         + A 
Sbjct: 275 VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L + MI+ G  P+   Y  L++  CS+G + EA +   +M   G  P V    +L+ G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G L  A +  N+MI  G   ++ T+  +++ +CK+   +    +   +   G   + 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+   I  +   G ++ A +LL  +   G  P  + Y  ++  +FR  ++++AF  F E
Sbjct: 455 MTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQE 514

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           ++ +   PN   Y  ++    R G   EA     +    G  P S  ++ +       GK
Sbjct: 515 IEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGK 574

Query: 313 HDLAEKI 319
             +A ++
Sbjct: 575 VKIAAQL 581



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 3/253 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +  A E +N+  +  C+  V+ Y  ++  LC+  +F  A +L+ +M
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  T+   +   C +G++  A + L+ M   G  P +   + L+  L      
Sbjct: 446 TLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  ++  +    +L T+N+++    ++G +   ++++      G   D  TY  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 199 IPAVSKAGMIDEAFRLLHNL--VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I A  K G +  A +L+  +  +++ H P    Y  +I G       ++A  F  +   +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWH-PDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 257 GHPPNRPVYTMLI 269
           G  PN   +  L+
Sbjct: 625 GICPNFATWNALV 637



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 121/285 (42%), Gaps = 32/285 (11%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++++M   G    +  +  ++N +   G   +A +    + + G  P VR  + L+  LL
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           +    +    +   M K G + ++ T+N L++ +CK+  V+   +++  +   G   D  
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 194 TYKILIPAVSKAGMIDE------------------------------AFRLLHNLVEDGH 223
           TY  ++ ++ KAG ID+                              A +LL  ++++G 
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y+ II  +   G  + AF  F++M ++G   N   +T LI  C   G+  EA +
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               M + G  P    ++ +  GL  C    L E +++ +   RS
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGL--CSNGSLEEALQVCDQMQRS 378



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+ +    +  T + +++   +    + A  +F +  A N Q  ++ YN++L+  
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPP 121
               +   A  L  + + +G  PD  TY  +++A+C  GK++ A + ++ +S  K ++P 
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPD 594

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           +     L+ G  N   +E A   ++K I QG   +  T+N+L+ 
Sbjct: 595 IITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 5/182 (2%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++  + ++ +M   G     + F  +I    + G  E  ++M+Y + + G    V  Y  
Sbjct: 90  MDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNH 149

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A+           L  N+ +DG  P    Y  ++K + +  + D A   F EM  KG
Sbjct: 150 LLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG 209

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP+   YT +++   + G+  +A             P    ++ + DG+   G+ ++A 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGR-----FKPSVPVYNALIDGMCKEGRIEVAI 264

Query: 318 KI 319
           K+
Sbjct: 265 KL 266


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 2/289 (0%)

Query: 6   ELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           EL K      SP   T + +I  + K G +  A  + ++ +    +   +  N++L  LC
Sbjct: 409 ELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLC 468

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             +    AY L+    ++G+  D+ +Y  L+  +   GK  EA +   EM +K   P + 
Sbjct: 469 GERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSII 528

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL ++G  + +   +N++++ G V D  T+N++I   C+ G+VE   + +  +
Sbjct: 529 TYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKM 588

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K     D+ T  IL+  +   GM+D+A +L +  +  G       Y  II G+ +  +F
Sbjct: 589 VKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRF 648

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++AF   +EM+ K   P+   Y  +++     GR  EA  ++  + E G
Sbjct: 649 EEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQG 697



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L++  C       A  LI +M      PD  +Y  +++  C  GK+ EA++ L +M 
Sbjct: 215 FNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMK 274

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G  P     ++LV G    G+L+ A Q+++ M +   + D+ T+N LI  +CK G+++
Sbjct: 275 NNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKID 334

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +  L L  DV TY  LI          + F L+  +   G KP    Y  ++
Sbjct: 335 EAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVV 394

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           K   + G+ D+A     +M+  G  P+   +  LI    + GR  EA   + EM+  GL 
Sbjct: 395 KWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLK 454

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
             S   + +   L  CG+  L +  +LL
Sbjct: 455 MNSVTLNTILHTL--CGERKLDDAYKLL 480



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 154/386 (39%), Gaps = 70/386 (18%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I+LM   N+     T +++I    K G +D A  + ++         V+ YN+L+   
Sbjct: 303 QVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGC 362

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +       + LI +M  KG  P+  TY ++V  +   GKM  A   L++M + GF+P  
Sbjct: 363 FDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDC 422

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G   AG L  A +M+++M ++G  ++  T N+++ T+C   +++   ++  S
Sbjct: 423 VTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSS 482

Query: 183 VCKLGLCAD-----------------------------------VSTYKILIPAVSKAGM 207
             K G   D                                   + TY  +I  +  +G 
Sbjct: 483 ASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGK 542

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP------- 260
            D++   L+ L+E G  P  + Y  II G  R GQ + AF F ++M  K   P       
Sbjct: 543 TDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNI 602

Query: 261 ----------------------------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
                                       +   Y  +I+   +  RF EA + L EM E  
Sbjct: 603 LLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKK 662

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEK 318
           L P    ++ +   L + G+   AE+
Sbjct: 663 LGPDCYTYNAILSALADAGRMKEAEE 688



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 133/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T ++++  + K G +  A +V +     N    V  YN L+  LC+   
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGK 332

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M     +PD  TY  L+N         +  E + +M  KG  P     ++
Sbjct: 333 IDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNV 392

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V+  +  G +++A   + KM + GF  D  TFN+LI   CK+G +     M   + + G
Sbjct: 393 VVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKG 452

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  T   ++  +     +D+A++LL +  + G+      Y  +I G F+ G+  +A 
Sbjct: 453 LKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAM 512

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EMK K   P+   Y  +I      G+  ++ + L E+ E GL P    ++ +  G
Sbjct: 513 KLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILG 571



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 5/292 (1%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY---ALIRRMIRKGFVPDKRTYA 91
           +A ++FN+    + +  +L  N+L+ AL         Y   A+   +I+ G   +  T+ 
Sbjct: 157 HAAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFN 216

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+   C   K+ EA   + +M D    P     + ++  L   G L  A+ ++  M   
Sbjct: 217 ILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNN 276

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G + +  TFN L+   CK G ++   ++   + +  +  DV TY +LI  + K G IDEA
Sbjct: 277 GLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEA 336

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           FRL   +      P    Y  +I G F        F    +M+ KG  PN   Y +++  
Sbjct: 337 FRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKW 396

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             + G+   A N L +M E G +P    F+ + +G    G+  L+E   +++
Sbjct: 397 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGR--LSEAFRMMD 446



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 41/353 (11%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + V+  T +++I        +  A+ +  K   F+C    + YN++L  LC+    + A 
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEAR 267

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G +P++ T+ ILV+ +C  G ++EA + +  M+     P V   ++L+ GL
Sbjct: 268 DLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGL 327

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI--CKSGEVEFCVEMYYSVCKLGLCA 190
              G ++ A ++ ++M     + D+ T+N+LI     C S    F  E+   +   G+  
Sbjct: 328 CKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGF--ELIDKMEGKGVKP 385

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY +++    K G +D A   L  + E G  P    +  +I G  + G+  +AF   
Sbjct: 386 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMM 445

Query: 251 SEMKIKGHPPNR-PVYTMLITMCG----------------------------------RG 275
            EM  KG   N   + T+L T+CG                                  + 
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKD 505

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKI-ELLEVSL 326
           G+ VEA     EM E  + P    ++ +  GL + GK D + +K+ ELLE  L
Sbjct: 506 GKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGL 558



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 26/263 (9%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+++  LC       +   +  ++  G VPD+ TY  ++  +C  G++ +A +F  
Sbjct: 527 IITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHN 586

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  K F P +   ++L++GL   G L+ A ++ N  I +G  +D  T+N++I  +CK  
Sbjct: 587 KMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKED 646

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E   ++   + +  L  D  TY  ++ A++ AG + EA   +  +VE           
Sbjct: 647 RFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVE----------- 695

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGH-------PPNRPVYTMLITMCGRGGRFVEAANY 284
                   +G+  D     ++ KI+          PN   ++  I      G++ +A + 
Sbjct: 696 --------QGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKDAMHM 747

Query: 285 LVEMTEMGLTPISRCFDLVTDGL 307
           + E T+ G+T     +  + +GL
Sbjct: 748 VQESTQKGITLHKSTYISLMEGL 770



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 23/209 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II  + + G V+ A +  NK    + +  +   N LL  LC   +   A  L    
Sbjct: 564 TYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNTW 623

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG   D  TY  +++  C   +  EA + L EM +K   P     + ++  L +AG +
Sbjct: 624 ISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRM 683

Query: 139 ESAKQMVNKMIKQGFVLDLE-----------------------TFNSLIETICKSGEVEF 175
           + A++ ++++++QG + D                         TF+  I  +C  G+ + 
Sbjct: 684 KEAEEFMSRIVEQGKLQDQTISLNKRKIESSSETSQESDPNSVTFSEQINELCTQGKYKD 743

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            + M     + G+    STY  L+  + K
Sbjct: 744 AMHMVQESTQKGITLHKSTYISLMEGLIK 772


>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
 gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
          Length = 798

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 149/327 (45%), Gaps = 6/327 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLL 59
           M+  I   +   L         +I      G    AV+ F++    F C+    +YN++L
Sbjct: 121 MYDAIADAQAAGLQPPAAAFEALIFAHASAGRHHEAVDAFSRMEGEFGCRPTTFVYNAVL 180

Query: 60  FALCEVK-LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   A AL  RM+  G +P++ TY +L++  C  G   +A +   EM  +G 
Sbjct: 181 RVLVASGGVVPLALALYNRMVAAGCLPNRATYNVLMDGLCKRGTAVDALKLFDEMLQRGI 240

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V+   +L+  + NAG L+ A+ ++N M  +G   D  T+N+ +  +CK+G V+  +E
Sbjct: 241 TPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIE 300

Query: 179 MYYSVCKLG-LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKG 236
              ++ + G     +  Y  LI  +  AG  +E F+    ++E     P   LY  +I+G
Sbjct: 301 RLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSPDIVLYTIMIRG 360

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
               G+ DDAF FF EMK K   P+   Y  L+      G    A + + EM +  +   
Sbjct: 361 CAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLMSEMAQNNVVLD 420

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +    ++  GL  C K  + E +++ +
Sbjct: 421 TNTHTIMIHGL--CKKQLVDEAMQVFD 445



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 13/293 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+++  + S      +++I    + G +D+A   F++            YN+LL ALC+
Sbjct: 339 MEVLEQADFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCD 398

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                GA +L+  M +   V D  T+ I+++  C    + EA +    M + G +P V  
Sbjct: 399 SGDLDGARSLMSEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMT 458

Query: 125 RDLLVQGLLNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSG 171
            ++L+ GL  A  LE A+ +  KM             +    V D E+   L++++C+SG
Sbjct: 459 YNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSG 518

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V    ++   +   G+  DV TY  L+  + K   +D A RL   L   G       Y 
Sbjct: 519 QVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYG 578

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
            +I  + R  +++DA   F ++   G  P+  +Y  ++    R  +  +A N+
Sbjct: 579 TLIDSLLRAHRYNDAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINF 631



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/321 (20%), Positives = 150/321 (46%), Gaps = 17/321 (5%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    ++ + +T ++++      G +  A  + N      C    + YN+ L  L
Sbjct: 230 KLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSGL 289

Query: 63  CEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNP 120
           C+      A   +  + R G FV   + Y+ L++    +G+  E  Q +++ +    F+P
Sbjct: 290 CKAGRVDEAIERLEALRRTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADFSP 349

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++++G   AG ++ A    ++M ++ F  D   +N+L++ +C SG+++    + 
Sbjct: 350 DIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGARSLM 409

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +  +  D +T+ I+I  + K  ++DEA ++   +VE G  P    Y  +I G++R 
Sbjct: 410 SEMAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRA 469

Query: 241 GQFDDAFCFFSEMKIKGHPP--------------NRPVYTMLITMCGRGGRFVEAANYLV 286
            + ++A   F +M++  +P               +  +  ++ +MC + G+ ++A   L 
Sbjct: 470 HRLEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMC-QSGQVLKAYKLLR 528

Query: 287 EMTEMGLTPISRCFDLVTDGL 307
            + + G+ P    ++ + +GL
Sbjct: 529 GIMDSGVVPDVVTYNTLLNGL 549



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 121/359 (33%), Gaps = 93/359 (25%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL----- 62
           M   N+ +   T +++I    K  LVD A++VF+      C   V+ YN L+  L     
Sbjct: 412 MAQNNVVLDTNTHTIMIHGLCKKQLVDEAMQVFDGMVEVGCHPTVMTYNVLIDGLYRAHR 471

Query: 63  -------------------------------------------CEVKLFHGAYALIRRMI 79
                                                      C+      AY L+R ++
Sbjct: 472 LEEARMLFYKMEVGNNPSLFLRLTLGANQVKDSESLQKLVDSMCQSGQVLKAYKLLRGIM 531

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G VPD  TY  L+N  C    +  A    +E+  KGF+        L+  LL A    
Sbjct: 532 DSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFSLDEITYGTLIDSLLRAHRYN 591

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS--VCKLGLCA------- 190
            A  +   ++  G    L  +NS++ ++C+  ++   +  ++   + K  L A       
Sbjct: 592 DAMTLFQDILHIGGTPSLSIYNSIMRSLCRMNKLSQAINFWFDHLLKKYNLSAQDEVIAS 651

Query: 191 ---------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                                      +   Y I +  + +A  ID+A ++ H L E G 
Sbjct: 652 ARKKFEEGSLDEAVRELIKIDQEYGSVNSCPYTIWLIGLIQARRIDDALKIFHILEESGI 711

Query: 224 KPFPSLYAPIIKGMFRRGQFDDA-----FCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
              P+  A + K +      D A     +       +  H  NR    +L ++C R  R
Sbjct: 712 DITPACCAHLSKYLCWEKNLDSAVDVMLYTLNKRFIMSRHVGNR----LLSSLCIRHRR 766


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  122 bits (305), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 142/309 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    L     T + II    K G+V+ A E+    T+  C+  V+ YN LL A 
Sbjct: 228 KLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAF 287

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                +     L+  M  +G  P+K TY+IL+++ C  G++ EA   L+ M +K   P  
Sbjct: 288 LNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDT 347

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              D L+  L   G L+ A  +++ MI  G + D+  +N+++  +CK+G     +E++  
Sbjct: 348 YSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNK 407

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +  +G   +VS+Y  +I A+   G    A  ++  ++  G  P    Y  +I  + R G 
Sbjct: 408 LRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGL 467

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     +M+  G  P    Y +++    +  R  +A     EM E G  P    + L
Sbjct: 468 VEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYIL 527

Query: 303 VTDGLKNCG 311
           + +G+   G
Sbjct: 528 LIEGIGFAG 536



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 127/268 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+++   C+V     A  ++ RM  +GF+PD  TY I++ + C+  K+  A + L 
Sbjct: 137 VFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLD 196

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++      P V    +L++  +  G +  A +++ +M+ +G + D+ T+N++I  +CK G
Sbjct: 197 QLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG 256

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            VE   E+  S+   G   DV +Y IL+ A    G  DE  +L+  +   G +P    Y+
Sbjct: 257 MVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYS 316

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + R G+ D+A      M  K   P+   Y  LI+   + GR   A   +  M   
Sbjct: 317 ILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISN 376

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    ++ +   L   G  + A +I
Sbjct: 377 GCLPDIVNYNTILAALCKNGNANQALEI 404



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 132/289 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G ++ A+++  +  A      +  YN+++  +C+  +   A  LI  +
Sbjct: 209 TYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSL 268

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y IL+ A+ + GK  E ++ + EM  +G  P      +L+  L   G +
Sbjct: 269 TSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 328

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++  MI++    D  +++ LI  +CK G ++  + +   +   G   D+  Y  +
Sbjct: 329 DEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTI 388

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G  ++A  + + L   G  P  S Y  +I  ++  G    A      M  KG 
Sbjct: 389 LAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGV 448

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  LI+   R G   EA   L +M + G  P    +++V  GL
Sbjct: 449 DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGL 497



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 123/260 (47%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A++V ++    NC   V+ Y  L+ A       + A  L+  M+ +G +PD  TY  ++ 
Sbjct: 191 ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 250

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G +  A E +  ++ KG  P V   ++L++  LN G  +  +++V +M  +G   
Sbjct: 251 GMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T++ LI ++C+ G ++  + +   + +  L  D  +Y  LI A+ K G +D A  ++
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++ +G  P    Y  I+  + + G  + A   F++++  G PPN   Y  +I+     
Sbjct: 371 DYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC 430

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           G    A   +  M   G+ P
Sbjct: 431 GDRSRALGMVPAMISKGVDP 450



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 133/294 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   ++ A +V N+  A      ++ YN ++ +LC  +    A  ++ +++   
Sbjct: 143 VISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDN 202

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P   TY IL+ A    G + EA + L+EM  +G  P +   + +++G+   G +E A 
Sbjct: 203 CMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAA 262

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++  +  +G   D+ ++N L+      G+ +   ++   +   G   +  TY ILI ++
Sbjct: 263 ELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSL 322

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G IDEA  +L  ++E    P    Y P+I  + + G+ D A      M   G  P+ 
Sbjct: 323 CRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDI 382

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y  ++    + G   +A     ++  MG  P    ++ +   L +CG    A
Sbjct: 383 VNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRA 436



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 115/232 (49%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD   Y  +++ +C   ++  A + L  M  +GF P +   ++++  L N   L  A ++
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +++++    +  + T+  LIE     G +   +++   +   GL  D+ TY  +I  + K
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            GM++ A  L+ +L   G KP    Y  +++    +G++D+     +EM  +G  PN+  
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVT 314

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           Y++LI+   R GR  EA + L  M E  LTP +  +D +   L   G+ DLA
Sbjct: 315 YSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 2/206 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T S   +I    K G +D A+ + +   +  C   ++ YN++L ALC+    + A 
Sbjct: 343 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQAL 402

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  ++   G  P+  +Y  +++A  S G    A   +  M  KG +P     + L+  L
Sbjct: 403 EIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCL 462

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E A  +++ M + GF   + ++N ++  +CK   ++  + M+  + + G   + 
Sbjct: 463 CRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNE 522

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNL 218
           +TY +LI  +  AG   EA  L ++L
Sbjct: 523 TTYILLIEGIGFAGWRTEAMELANSL 548



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 36/179 (20%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCV------------------------------ 52
           I+    K+G  + A+E+FNK     C   V                              
Sbjct: 388 ILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKG 447

Query: 53  -----LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                + YNSL+  LC   L   A  L+  M + GF P   +Y I++   C   ++ +A 
Sbjct: 448 VDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 507

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
               EM +KG  P      LL++G+  AG+   A ++ N +  +  V+  ++F  L +T
Sbjct: 508 GMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSRD-VISQDSFKRLNKT 565


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  121 bits (304), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 151/311 (48%), Gaps = 7/311 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + II  + K G+++NA  VF++     C+  ++ YN+++   C+  L   A  ++ +
Sbjct: 254 STYTTIIRGYCKMGMIENAKNVFDE---MGCKPNLVTYNTMINGFCKKGLMESAMKIVDQ 310

Query: 78  MIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           M   +  +PD  TY  L++ +C  G++ EA ++++EM  +   P V   + ++ GL   G
Sbjct: 311 MTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNG 370

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            ++ AK+M+ +M   G   ++ T  S+++ +C  G+++        +  LG+ AD   Y 
Sbjct: 371 NVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYG 430

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +++    K G  D+A  LL  +   G  P  S +  + + +   G+ D A     +MK  
Sbjct: 431 VVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQL 490

Query: 257 GHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           G  PN   Y+ +I  +C   GR  E   ++ +M   G    +  +  +  G    G  D+
Sbjct: 491 GCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADM 550

Query: 316 AEKI--ELLEV 324
           A ++  E+L++
Sbjct: 551 AMRLFCEMLDM 561



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 140/295 (47%), Gaps = 5/295 (1%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           ++ +G  G +  A+  F++       +C+  YN++L    +      A A+  +++++G 
Sbjct: 189 VKAYGDRGDIRGAIHWFHRAKKMESGRCLFSYNAILGVFVKANRIMLARAVFDQIVKEGV 248

Query: 84  V-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           V PD  TY  ++  +C  G +  A+    EM   G  P +   + ++ G    G +ESA 
Sbjct: 249 VKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMINGFCKKGLMESAM 305

Query: 143 QMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           ++V++M + +  + D  T+ +LI+  CK GE+E  ++    +       +V TY  +I  
Sbjct: 306 KIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYG 365

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +   G +DEA R++  +  +G K   + +  I+KG+   G+ DDA     EM   G   +
Sbjct: 366 LCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEAD 425

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              Y +++    + G+  +A + L EM   G+ P    F+ V   L   GK D A
Sbjct: 426 AKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKA 480



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 122/272 (44%), Gaps = 1/272 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K G ++ A++   +  + NC+  VL YN++++ LC       A  ++ RM
Sbjct: 323 TYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRM 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   +  T+  ++   C  GK+ +A   L+EM   G     +   ++V      G  
Sbjct: 383 RLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKA 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M  +G    + +FN++   + +SG+ +    +   + +LG   +  +Y  +
Sbjct: 443 DDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTV 502

Query: 199 IPAVSKA-GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I  + KA G + E    + ++  +GH    S+Y+ ++KG    G  D A   F EM   G
Sbjct: 503 IDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMG 562

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           +  N   +   +       +  E   +  EM+
Sbjct: 563 YVINLESFLAFVKGLSAKEKAFEVEKFFEEMS 594



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 1/252 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M   N   +  T + II     +G VD A  +  +      +  V  + S+L  L
Sbjct: 342 KYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGL 401

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C V     A   ++ M+  G   D + Y ++VN +C  GK  +A   L+EM  +G NP V
Sbjct: 402 CVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSV 461

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYY 181
              + + + L+ +G  + A  ++ +M + G   +  +++++I+ +CK+ G +    E   
Sbjct: 462 SSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVD 521

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +C+ G   D S Y  L+    + G  D A RL   +++ G+      +   +KG+  + 
Sbjct: 522 DMCRNGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKE 581

Query: 242 QFDDAFCFFSEM 253
           +  +   FF EM
Sbjct: 582 KAFEVEKFFEEM 593


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 139/298 (46%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++    K G V  A +V             ++YN+L+   C+V+   GA+ +  +M
Sbjct: 336 TCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+N  C    + +A++ + EM   G +P V   + L+     AG L
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E    +++ M ++G   D+ +F S+++  CK+G++   V +   +    +  +   Y  +
Sbjct: 456 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 515

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  ++G  ++AF L+  +   G       Y  ++KG+ R  Q D+A      ++ +G 
Sbjct: 516 IDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDL 315
            P+   Y  +I+ C   G   +A   L EM + G+ P  R +  +   L + G+ HD+
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDM 633



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 131/289 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  ++     T + +I    K  +V  A ++  +         V  +N+L+ A    
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 + ++  M +KG   D  ++  +V A+C +GK+ EA   L +M  K   P  +  
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++   + +G  E A  +V KM   G    + T+N L++ +C+S +++   E+ Y++  
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  DV +Y  +I A    G  D+A  LL  + + G +P    Y  ++  +   G+  D
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHD 632

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             C + +M  K   P+  +Y +++    R     + A+   EM+E G+ 
Sbjct: 633 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 122/272 (44%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           +F +  + + +   + YN+L+  LC++++   A  L+  M + G  P   T+  L++A+ 
Sbjct: 391 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 450

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
           ++G++ +    L +M  KG    V     +V+     G +  A  +++ MI +    + +
Sbjct: 451 TAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ 510

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +NS+I+   +SG+ E    +   +   G+ A + TY +L+  + ++  IDEA  L++ L
Sbjct: 511 VYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTL 570

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G +P    Y  II     +G  D A     EM   G  P    Y  L++     GR 
Sbjct: 571 RNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRV 630

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +      +M    + P S  + ++ D    C
Sbjct: 631 HDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 6/287 (2%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
            E   K        C +L N     LC+      A  ++  ++  G VP    Y  L+N 
Sbjct: 323 AESLKKGVMLGAYTCSILLN----GLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 378

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +C    +R A    ++M  +   P     + L+ GL     +  A+ +V +M K G    
Sbjct: 379 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 438

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +ETFN+LI+    +G++E C  +   + + G+ +DV ++  ++ A  K G I EA  +L 
Sbjct: 439 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 498

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
           +++     P   +Y  II      G  + AF    +MK  G   +   Y +L+    R  
Sbjct: 499 DMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +  EA   +  +   GL P    ++ +      C K D  + +ELL+
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISAC--CNKGDTDKALELLQ 603



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 112/258 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  L        A  +   M+  G VP+  TY  +++     G +        +M 
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQML 256

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   ++L+ GL  AG ++  + ++++M       D  T++ L + + ++GE  
Sbjct: 257 HDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESR 316

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++    K G+     T  IL+  + K G + +A ++L  LV  G  P   +Y  +I
Sbjct: 317 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLI 376

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +      AFC F +MK +   P+   Y  LI    +     +A + ++EM + G+ 
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 436

Query: 295 PISRCFDLVTDGLKNCGK 312
           P    F+ + D     G+
Sbjct: 437 PSVETFNTLIDAYGTAGQ 454



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 111/247 (44%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L    ++KG +    T +IL+N  C  GK+ +A++ L+ +   G  P     + L+ G 
Sbjct: 320 SLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGY 379

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                L  A  +  +M  +    D  T+N+LI  +CK   V    ++   + K G+   V
Sbjct: 380 CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSV 439

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI A   AG +++ F +L ++ + G K     +  ++K   + G+  +A     +
Sbjct: 440 ETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDD 499

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   PN  VY  +I      G   +A   + +M   G++     ++L+  GL    +
Sbjct: 500 MIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 313 HDLAEKI 319
            D AE++
Sbjct: 560 IDEAEEL 566



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVE 174
           G  P     + +VQ  + AG L+ A  MV +M +       D  ++N +I  + +SG+  
Sbjct: 152 GARPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 211

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +  +G+  +  TY  +I    K G ++  FRL   ++ DG KP    Y  ++
Sbjct: 212 DALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLL 271

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R G+ D+      EM      P+   Y++L     R G      +   E  + G+ 
Sbjct: 272 SGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVM 331

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +    ++ +GL   GK   AE++
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAEQV 356



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 67/152 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S S  T +L+++   +   +D A E+         +  V+ YN+++ A C 
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L++ M + G  P  RTY  LV+A  S+G++ + +   Q+M  K   P    
Sbjct: 592 KGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSI 651

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
             ++V   +          +  +M ++G   D
Sbjct: 652 YGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 35/330 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +  ++++ +  + G + +A  VF++      Q  V+ +N+L+  +C+    + A AL   
Sbjct: 243 RQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGL 302

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP----------------- 120
           M + G  PD  TY   +   C +G++++A E  +EM ++G NP                 
Sbjct: 303 MAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGD 362

Query: 121 -----------PVRG-------RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
                        RG        + LV G      +++A  +V +M K G   D  T+ +
Sbjct: 363 VTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 422

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           LI+  CK GE++  +EM   +   G+  D  TY  LI  +SKAG   +A R+L  ++E G
Sbjct: 423 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 482

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +P  + Y  +I    + G     F    EM+ KG  P    Y +++      G+   A 
Sbjct: 483 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNAD 542

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             L  M  +G+ P    ++++ DG    GK
Sbjct: 543 MLLNAMLNIGVCPNDITYNILLDGHCKHGK 572



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 2/259 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AYA    ++  G  P+ R + +L+     SGK+  A+    EM  +G  P V   + L+ 
Sbjct: 226 AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 285

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G+  A  L +A  +   M K G   D+ T+ + I+ +CK+G ++  +EM+  +C+ GL  
Sbjct: 286 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 345

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +      LI A  K G +     L   +   G K     Y  ++ G  R      A    
Sbjct: 346 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIV 405

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  P++  YT LI  C + G    A     EM++ G+      +  +  GL   
Sbjct: 406 EEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKA 465

Query: 311 GKHDLAEKI--ELLEVSLR 327
           G+   AE+I  E++E  L+
Sbjct: 466 GRSVDAERILCEMMEAGLQ 484



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 121/259 (46%), Gaps = 7/259 (2%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P T  L+ +I+   K G V   +E+  +      +  ++ YN+L+   C V+    A 
Sbjct: 343 LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAAN 402

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M + G  PDK TY  L++  C  G++  A E  QEMSD+G          L+ GL
Sbjct: 403 DIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGL 462

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG    A++++ +M++ G   D  T+  +I+  CK+G+V+   +    +   G    +
Sbjct: 463 SKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGI 522

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY +++      G +  A  LL+ ++  G  P    Y  ++ G  + G+  D      E
Sbjct: 523 VTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDT----EE 578

Query: 253 MK-IKGHPPNRPVYTMLIT 270
           +K  KG   +  VYT LI 
Sbjct: 579 LKSAKGMVSDFGVYTSLIN 597



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L     T + +I+   K G +D A+E+  + +        + Y +L+  L +
Sbjct: 405 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++  M+  G  PD  TY ++++A+C +G ++   + L+EM +KG NP +  
Sbjct: 465 AGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 524

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ G  + G +++A  ++N M+  G   +  T+N L++  CK G+V    E+  +  
Sbjct: 525 YNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKVRDTEELKSAK- 583

Query: 185 KLGLCADVSTYKILI 199
             G+ +D   Y  LI
Sbjct: 584 --GMVSDFGVYTSLI 596


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 143/289 (49%), Gaps = 8/289 (2%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
              C+  ++ Y+ ++  LC+ +    A  L + M  +G +PD  +Y  L++ +C SGK  
Sbjct: 295 GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWE 354

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A+    EM D G  P V    +L+  L   G +  A +++  +I++G + D+ T  +L+
Sbjct: 355 KAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLV 414

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH- 223
           + +C    +    +++  + KLG   +V T   L+  + ++G I  A  L  N++ D   
Sbjct: 415 KGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSP 474

Query: 224 -----KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
                KP    Y+ II G+ + G+ D+A   F EMK  G  P+   YT LI    R G++
Sbjct: 475 YGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKW 534

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            +A     EM ++G+ P    F ++ D L  C +  + E  ELLEV ++
Sbjct: 535 KDAKYLFNEMVDIGVQPDVTTFSVLIDML--CKEGKVIEANELLEVMIQ 581



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 150/298 (50%), Gaps = 10/298 (3%)

Query: 38  EVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           E+ N  + +   C+  ++ Y+ ++  LC+ +    A  L + M  +G +PD  +Y  L++
Sbjct: 105 EMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIH 164

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C SGK  +A+    EM D G    V    +L+  L   G +  A +++  MI++G +L
Sbjct: 165 GFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCIL 224

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+ T+++LI+ +C    +     ++ S+ KLG   D   Y  L+  + + G I+ A +L 
Sbjct: 225 DIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLH 284

Query: 216 HNLVED----GHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             ++ D    G K  P+L  Y+ II G+ +  + D+A   F EMK +G  P+   YT LI
Sbjct: 285 QEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLI 344

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
                 G++ +A     EM ++G+ P      ++ D L  C K  + E  +LLEV ++
Sbjct: 345 HGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDML--CKKGKVIEANKLLEVVIQ 400



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 6/278 (2%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
             NC+   + Y+ ++  LC+      A  L + M   G +PD  +Y  L++ +C SGK +
Sbjct: 476 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 535

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A+    EM D G  P V    +L+  L   G +  A +++  MI++G + +  T+ +L+
Sbjct: 536 DAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLV 595

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED--- 221
           + +C +  +    +++  + KLG   DV TY  L+  + + G I  A  L   ++ D   
Sbjct: 596 KGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQ 655

Query: 222 ---GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
                KP    Y+ II G+ + G+ D+A   F EMK  G  PN   YT LI    R G+ 
Sbjct: 656 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 715

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            +A +   EM + G+   +  + ++  G    G+ D A
Sbjct: 716 EDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 8/268 (2%)

Query: 10  PYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           PY ++  P  +S  +II+   K G  D A E+F +  A      V+ Y SL+   C    
Sbjct: 474 PYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGK 533

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  L   M+  G  PD  T+++L++  C  GK+ EA E L+ M  +G  P       
Sbjct: 534 WKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTT 593

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-- 185
           LV+GL     +  A Q+  KM K G + D+ T+ +L++ +C++G ++  +E++  +    
Sbjct: 594 LVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDT 653

Query: 186 ----LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                    DV +Y I+I  + K G  DEA  L   +   G  P    Y  +I G  R G
Sbjct: 654 GQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSG 713

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           + +DA   F+EM  +G   N   Y+++I
Sbjct: 714 KLEDAKHLFNEMVDQGVQLNAVTYSVMI 741



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 143/324 (44%), Gaps = 20/324 (6%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y +   P   + S+II+   K    D A E+F +  A      V+ Y SL+   C    +
Sbjct: 113 YGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKW 172

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A  L   M+  G   D  T ++L++  C  GK+ EA E L+ M  +G    +     L
Sbjct: 173 EKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTL 232

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV----- 183
           ++GL     +  A ++   M K G   D   + +L++ +C++G +   ++++  +     
Sbjct: 233 IKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTG 292

Query: 184 -----CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
                CK  L +    Y I+I  + K    DEA  L   +   G  P    Y  +I G  
Sbjct: 293 RYGIKCKPTLIS----YSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFC 348

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-IS 297
             G+++ A C F+EM   G  P+    ++LI M  + G+ +EA   L  + + G  P + 
Sbjct: 349 LSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVV 408

Query: 298 RCFDLVTDGLKNCGKHDLAEKIEL 321
            C  LV  GL  C KH +++  +L
Sbjct: 409 TCTTLV-KGL--CMKHRISKATQL 429



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 8/250 (3%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G  PD  T  +L++ +C  GK+ EA E L+ M  +G    +     L++GL     
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV----EMYYSVCKLGL-CA-D 191
           +  A Q+   M K G   D   + +L++ +C++G++   +    EM     + G+ C   
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + +Y I+I  + K    DEA  L   +   G  P    Y  +I G  R G+++ A C F+
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM   G   +    +MLI +  + G+ +EA   L  M + G       +  +  GL  C 
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL--CM 238

Query: 312 KHDLAEKIEL 321
           KH ++E   L
Sbjct: 239 KHRISEATRL 248



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 108/217 (49%), Gaps = 8/217 (3%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V    +L+      G +  A +++  M+++G +LD+ T+++LI+ +C    +   
Sbjct: 5   GIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEA 64

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPFPSL--Y 230
            +++ S+ KLG   D   Y  L+  + + G I+ A  L   ++ D    G K  P+L  Y
Sbjct: 65  TQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSY 124

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           + II G+ +  + D+A   F EMK +G  P+   YT LI    R G++ +A     EM +
Sbjct: 125 SIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLD 184

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           +G+        ++ D L  C +  + E  ELLEV ++
Sbjct: 185 VGIRSDVTTSSMLIDIL--CKEGKVIEANELLEVMIQ 219



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 135/305 (44%), Gaps = 11/305 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +     + + +I  F   G  + A  +FN+      Q  V   + L+  LC+   
Sbjct: 328 MKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGK 387

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  +I++G +PD  T   LV   C   ++ +A +   +M   G  P V     
Sbjct: 388 VIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCAT 447

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLE------TFNSLIETICKSGEVEFCVEMYY 181
           L++GL  +G ++ A ++   M+       +       +++ +I+ +CK G  +   E++ 
Sbjct: 448 LMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFK 507

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +  LG+  DV +Y  LI    ++G   +A  L + +V+ G +P  + ++ +I  + + G
Sbjct: 508 EMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEG 567

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A      M  +G  PN   YT L+       R  EA    ++M ++G  P     D
Sbjct: 568 KVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLP-----D 622

Query: 302 LVTDG 306
           +VT G
Sbjct: 623 VVTYG 627



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 146/359 (40%), Gaps = 47/359 (13%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +     + + +I  F + G  + A  +FN+      +  V   + L+  LC+   
Sbjct: 147 MKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGK 206

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  MI++G + D  TY+ L+   C   ++ EA      M   G  P       
Sbjct: 207 VIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGT 266

Query: 128 LVQGLLNAGYLESAKQMVNKMIK------------------------------------- 150
           L++GL   G + +A Q+  +M+                                      
Sbjct: 267 LMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFK 326

Query: 151 ----QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
               QG + D+ ++ +LI   C SG+ E    ++  +  +G+  DV+T  +LI  + K G
Sbjct: 327 EMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKG 386

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN-RPVY 265
            + EA +LL  +++ G  P       ++KG+  + +   A   F +M+  G  PN     
Sbjct: 387 KVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCA 446

Query: 266 TMLITMCGRGGRFVE---AANYLVEMTEMGLT--PISRCFDLVTDGLKNCGKHDLAEKI 319
           T++  +C  G   +      N L + +  G+   P +  + ++ DGL  CG+ D A ++
Sbjct: 447 TLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAREL 505



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 11  YNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y  +  P  +S  +II+   KHG  D A E+F +  A      V+ Y SL+   C     
Sbjct: 656 YGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 715

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
             A  L   M+ +G   +  TY+++++ +C  G++ +A
Sbjct: 716 EDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA 753


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 5/289 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II  + + G  + A+++F +   F C+  V +YN LL AL     F     L   M + G
Sbjct: 115 IINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDG 174

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+  TY IL+ A C + ++  A +   EMS+KG  P       +V  L  AG ++ A+
Sbjct: 175 LIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAR 234

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  +     F   +  +N+LI+ +CK G +E  +++   +   G+  +V +Y  +I ++
Sbjct: 235 ELAGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSL 289

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             +G ++ AF L   +   G       + P+IKG F RG+  +A   +  M   G  PN 
Sbjct: 290 CVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNV 349

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             Y  LI      G   EA     +M   G  P    + ++ DG    G
Sbjct: 350 VAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSG 398



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 125/271 (46%), Gaps = 3/271 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I+     G +  A++++       C+  V+ YN+L+  LC       A  +  +
Sbjct: 315 HTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQ 374

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M R G +P+  TY+IL++ +  SG +  A E    M   G  P V     +V  L     
Sbjct: 375 MQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSM 434

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A  +V KM  +G   +  TFN+ I+ +C +G VE+ +++   +   G   +++TY  
Sbjct: 435 FDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A+ +    +EAF L   +     +P    Y  ++ G  R G   +A   F +  ++G
Sbjct: 495 LLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRG 554

Query: 258 HPPNRPVY-TMLITMCGRGGRFVEAANYLVE 287
             P+   Y TM+   C +G   V+ A  LVE
Sbjct: 555 TAPDSITYNTMIHAYCKQGK--VKIAAQLVE 583



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 137/299 (45%), Gaps = 7/299 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G +D+A E+     A   +  V +YN+L+  +C+      A  L+  M
Sbjct: 216 TYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEM 270

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  +Y+ ++N+ C SG +  A     +M  +G +  +     L++G    G L
Sbjct: 271 MDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKL 330

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +   MI+ G   ++  +N+LI  +C +G +E  +++   + + G   +V+TY IL
Sbjct: 331 YEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSIL 390

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +K+G +  A    + ++  G +P    Y  ++  + +   FD A     +M ++G 
Sbjct: 391 IDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGC 450

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   +   I  +CG  GR   A   L  M   G  P    ++ + D L    K++ A
Sbjct: 451 TPNTITFNTFIKGLCGN-GRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEA 508



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 140/305 (45%), Gaps = 7/305 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K+  VD A ++F + +   C    + Y +++ +LC+      A  L  R 
Sbjct: 181 TYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGR- 239

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
               F P    Y  L++  C  G++  A + L EM D G +P V     ++  L  +G +
Sbjct: 240 ----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNV 295

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  +M  +G   ++ TF  LI+     G++   ++++  + + G   +V  Y  L
Sbjct: 296 ELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTL 355

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++EA ++   +   G  P  + Y+ +I G  + G    A   ++ M   G 
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT ++ +  +   F +A + + +MT  G TP +  F+    GL  CG   +   
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGL--CGNGRVEWA 473

Query: 319 IELLE 323
           ++LLE
Sbjct: 474 MKLLE 478



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G ++ A+++  +         V+ Y+ ++ +LC       A+AL  +M  +G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              +  T+  L+      GK+ EA +  + M   G  P V   + L+ GL + G LE A 
Sbjct: 310 CDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEAL 369

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+ ++M + G + ++ T++ LI+   KSG++    E +  +   G   +V TY  ++  +
Sbjct: 370 QVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVL 429

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M D+A  L+  +  +G  P    +   IKG+   G+ + A      M+  G  PN 
Sbjct: 430 CKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNI 489

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y  L+    R  ++ EA     E+    L P    ++ V  G    G   + E ++L 
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM--MGEALQLF 547

Query: 323 EVSL 326
             +L
Sbjct: 548 GKAL 551



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 129/307 (42%), Gaps = 2/307 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +S   II      G V+ A  +F +     C   +  +  L+         + A 
Sbjct: 275 VDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEAL 334

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L + MI+ G  P+   Y  L++  CS+G + EA +   +M   G  P V    +L+ G 
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G L  A +  N+MI  G   ++ T+  +++ +CK+   +    +   +   G   + 
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+   I  +   G ++ A +LL  +   G  P  + Y  ++  +FR  ++++AF  F E
Sbjct: 455 ITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQE 514

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           ++ +   PN   Y  ++    R G   EA     +    G  P S  ++ +       GK
Sbjct: 515 IEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGK 574

Query: 313 HDLAEKI 319
             +A ++
Sbjct: 575 VKIAAQL 581



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 116/253 (45%), Gaps = 3/253 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F K G +  A E +N+  +  C+  V+ Y  ++  LC+  +F  A +L+ +M
Sbjct: 386 TYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  P+  T+   +   C +G++  A + L+ M   G  P +   + L+  L      
Sbjct: 446 TLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKY 505

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  ++  +    +L T+N+++    ++G +   ++++      G   D  TY  +
Sbjct: 506 EEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTM 565

Query: 199 IPAVSKAGMIDEAFRLLHNL--VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I A  K G +  A +L+  +  +++ H P    Y  +I G       ++A  F  +   +
Sbjct: 566 IHAYCKQGKVKIAAQLVERVSSMKEWH-PDIITYTSLIWGACNWMNIEEAMAFLDKAINQ 624

Query: 257 GHPPNRPVYTMLI 269
           G  PN   +  L+
Sbjct: 625 GICPNFATWNALV 637



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 121/285 (42%), Gaps = 32/285 (11%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++++M   G    +  +  ++N +   G   +A +    + + G  P VR  + L+  LL
Sbjct: 96  ILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALL 155

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           +    +    +   M K G + ++ T+N L++ +CK+  V+   +++  +   G   D  
Sbjct: 156 SENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAV 215

Query: 194 TYKILIPAVSKAGMIDE------------------------------AFRLLHNLVEDGH 223
           TY  ++ ++ KAG ID+                              A +LL  ++++G 
Sbjct: 216 TYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y+ II  +   G  + AF  F++M ++G   N   +T LI  C   G+  EA +
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               M + G  P    ++ +  GL  C    L E +++ +   RS
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGL--CSNGSLEEALQVCDQMQRS 378



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 81/164 (49%), Gaps = 1/164 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+ +    +  T + +++   +    + A  +F +  A N Q  ++ YN++L+  
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPP 121
               +   A  L  + + +G  PD  TY  +++A+C  GK++ A + ++ +S  K ++P 
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPD 594

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           +     L+ G  N   +E A   ++K I QG   +  T+N+L+ 
Sbjct: 595 IITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVR 638



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 5/182 (2%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++  + ++ +M   G     + F  +I    + G  E  ++M+Y + + G    V  Y  
Sbjct: 90  MDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNH 149

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A+           L  N+ +DG  P    Y  ++K + +  + D A   F EM  KG
Sbjct: 150 LLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKG 209

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            PP+   YT +++   + G+  +A             P    ++ + DG+   G+ ++A 
Sbjct: 210 CPPDAVTYTTMVSSLCKAGKIDDARELAGR-----FKPSVPVYNALIDGMCKEGRIEVAI 264

Query: 318 KI 319
           K+
Sbjct: 265 KL 266


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 142/311 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+ + Y ++ S +T +L++    K G V  A++ F   T   C   +  Y +++  L + 
Sbjct: 119 EMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKN 178

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K    A AL+ ++   G  P   TY  L+N  C  G++ EA + L+++ D G  P V   
Sbjct: 179 KKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 238

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL        A ++  +M  +G VLD   + +LI  + ++G++     +Y ++  
Sbjct: 239 TSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTS 298

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV T   +I  + KAG I  A R+  ++   G  P   +Y+ +I G+ +  + D 
Sbjct: 299 QGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 358

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    ++MK     P+   Y +LI    + G    A  +  EM E G  P    ++++  
Sbjct: 359 ALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVS 418

Query: 306 GLKNCGKHDLA 316
           G    G  D A
Sbjct: 419 GFCKAGNTDAA 429



 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 142/334 (42%), Gaps = 35/334 (10%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++   T + I++   K+  + +AV +  K TA  C   +  YN+LL  LC++     A  
Sbjct: 162 TIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 221

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+R+++  G  PD  TY  L++      +  EA +  +EM+ +G          L++GLL
Sbjct: 222 LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLL 281

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLET---------------------------------- 159
            AG +  A  +   M  QG V D+ T                                  
Sbjct: 282 QAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEV 341

Query: 160 -FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +++LI  +CK+ +++  +EM   + K     D  TY ILI  + K+G ++ A      +
Sbjct: 342 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 401

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G KP    Y  ++ G  + G  D A   F +M      PN   Y  LI+   +  + 
Sbjct: 402 LEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQL 461

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            +A+ Y   M E G  P S  +  + DGL   GK
Sbjct: 462 TKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 137/290 (47%), Gaps = 3/290 (1%)

Query: 33  VDNAVEVFNKCTA--FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
            D A E+F   ++  F  Q  V   N+LL      K    A  L++  +   F+PD  T+
Sbjct: 38  ADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETW 97

Query: 91  AILVNAWCSSGKMREAQEFLQEMS-DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +L+  +C + +  EA   ++EM  D G  P ++  +L++ GL  +G + +A        
Sbjct: 98  NVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTT 157

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G  +D+ T+ ++++ + K+ +++  V +   +   G    ++TY  L+  + K G ++
Sbjct: 158 TNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLE 217

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  LL  +V++G  P    Y  +I G+ +  +  +A+  F EM ++G   +   YT LI
Sbjct: 218 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALI 277

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               + G+  +A++    MT  G  P       + DGL   G+   A +I
Sbjct: 278 RGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 327



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 124/275 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+  GK      A ++F +          + Y +L+  L +      A ++ + M
Sbjct: 237 TYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTM 296

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G VPD  T + +++  C +G++  A    + M  +G  P       L+ GL  A  +
Sbjct: 297 TSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKM 356

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M+ +M K     D  T+N LI+ +CKSG+VE     +  + + G   DV TY IL
Sbjct: 357 DCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 416

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    KAG  D A  +  ++      P    Y  +I G+ +R Q   A  +F  MK +G 
Sbjct: 417 VSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGC 476

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           PP+  VY+ L+    + G+         EM   G+
Sbjct: 477 PPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV 511



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 130/292 (44%), Gaps = 1/292 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    L +     + +I    + G +  A  V+   T+  C   V+  ++++  
Sbjct: 255 YKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 314

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + M  +G  P++  Y+ L++  C + KM  A E L +M      P 
Sbjct: 315 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 374

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++L+ GL  +G +E+A+   ++M++ G   D+ T+N L+   CK+G  +    ++ 
Sbjct: 375 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFD 434

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       +V TY  LI  + K   + +A     ++ E G  P   +Y+ ++ G+ + G
Sbjct: 435 DMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSG 494

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + +     F EM+  G   N    T LI    +  R  EA +    + + G+
Sbjct: 495 KLEGGCMLFDEMERSG-VANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 117/261 (44%), Gaps = 37/261 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS +I+   K G +  AV +F    A       ++Y++L+  LC+ +    A  ++ +M
Sbjct: 307 TLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQM 366

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD  TY IL++  C SG +  A+ F  EM + G  P V   ++LV G   AG  
Sbjct: 367 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNT 426

Query: 139 ESA-----------------------------KQMV------NKMIKQGFVLDLETFNSL 163
           ++A                             +Q+         M ++G   D   ++SL
Sbjct: 427 DAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSL 486

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           ++ +CKSG++E    ++  + + G+ A+  T   LI  + KA  +DEA  L + + ++G 
Sbjct: 487 VDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM 545

Query: 224 KPFPSLYAPIIKGMFRRGQFD 244
            P P  Y  II  + +  + +
Sbjct: 546 -PHPYAYNSIISTLIKSAKVN 565


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 135/289 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G   NA+ V ++     C   V+ Y  LL A C+   +  A  L+  M
Sbjct: 160 TYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEM 219

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P     +++++GL  A   
Sbjct: 220 RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERW 279

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++ +M ++G   ++ TFN LI  +C+ G VE  +E+   + K G   +  +Y  L
Sbjct: 280 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 339

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A  K   +D+A   L  +V  G  P    Y  ++  + R G+ D A     ++K KG 
Sbjct: 340 LHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P    Y  +I    + G+  EA   L EM   GL P    +  +  GL
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGL 448



 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 145/305 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    + G VD+A+E      ++ C+   + YN +L  L
Sbjct: 214 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +  A  L+  M +KG  P+  T+ +L++  C  G +  A E L+++   G  P  
Sbjct: 274 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 333

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+        ++ A   ++ M+ +G   D+ ++N+L+  +C+SGEV+  VE+ + 
Sbjct: 334 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 393

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + +Y  +I  ++KAG   EA  LL+ +V  G +P    Y+ I  G+ R  +
Sbjct: 394 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 453

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +DA   F +++  G  PN  +Y  +I    +      A +    M   G  P    + +
Sbjct: 454 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 513

Query: 303 VTDGL 307
           + +GL
Sbjct: 514 LIEGL 518



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  LC       A A++  M+R+  VPD  TY IL+ A C     ++A + L EM 
Sbjct: 161 YNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMR 220

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           DKG  P +   +++V G+   G ++ A + +  +   G   +  ++N +++ +C +   E
Sbjct: 221 DKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWE 280

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+   + + G   +V T+ +LI  + + G+++ A  +L  + + G  P    Y P++
Sbjct: 281 DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLL 340

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               ++ + D A  F   M  +G  P+   Y  L+T   R G    A   L ++ + G  
Sbjct: 341 HAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCA 400

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
           P+   ++ V DGL   GK    E +ELL
Sbjct: 401 PVLISYNTVIDGLTKAGKTK--EALELL 426



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV  +   + C    L YN LL A C+ K    A A +  M
Sbjct: 300 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C SG++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 360 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M+ +G   D+ T++++   +C+   +E  +  +  V  +G+  +   Y  +
Sbjct: 420 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I  + K      A  L   ++ +G  P  S Y  +I+G+   G   +A     E+  +G
Sbjct: 480 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     ++  F K   +D A+   +   +  C   ++ YN+LL ALC      
Sbjct: 331 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 385

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   +Y  +++    +GK +EA E L EM  KG  P +     + 
Sbjct: 386 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 445

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL     +E A +   K+   G   +   +N++I  +CK  E    ++++  +   G  
Sbjct: 446 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 505

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            + STY ILI  ++  G+I EA  LL  L   G
Sbjct: 506 PNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 10/247 (4%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           R++     PD  T A L+    +SG+  EA+  L         P V   + +V G   AG
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMVAGYCGAG 140

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            L++A+++V +M  +    D  T+N+LI  +C  G     + +   + +     DV TY 
Sbjct: 141 QLDAARRLVAEMPVEP---DAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYT 197

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           IL+ A  K     +A +LL  + + G  P    Y  ++ G+ + G+ DDA  F   +   
Sbjct: 198 ILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSY 257

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  PN   Y +++       R+ +A   + EM + G  P    F+++   L  C K  + 
Sbjct: 258 GCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL--CRKGLVE 315

Query: 317 EKIELLE 323
             +E+LE
Sbjct: 316 PALEVLE 322


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 139/259 (53%), Gaps = 1/259 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +   M++KGF P+  TY+ L++ +C   ++ +A+     M+  G NP ++  ++L+ 
Sbjct: 238 AKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILIN 297

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G       ++A  +  +M  +  + ++ T+NSLI+ +CKSG++ + +++   +   G   
Sbjct: 298 GFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPP 357

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+ TY  L+ A+ K    D+A  LL  L + G +P    Y  +I G+ + G+ +DA   F
Sbjct: 358 DIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIF 417

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            ++ +KG+  N   YT++I +    G F EA   L +M E G  P +  ++++   L + 
Sbjct: 418 EDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDK 477

Query: 311 GKHDLAEKIELLEVSLRSV 329
            ++D AEK+ LLE+  R +
Sbjct: 478 DENDKAEKL-LLEMITRGL 495



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 126/270 (46%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           +  F K G V  A  VF        +  V+ Y+SL+   C VK  + A ++   M + G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD ++Y IL+N +C       A    +EM  +   P V   + L+ GL  +G +  A +
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +V++M  +G   D+ T++SL++ +CK+   +  + +   +   GL  ++ TY ILI  + 
Sbjct: 346 LVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLC 405

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G  ++A  +  +L+  G+    + Y  +I      G F +A    S+M+  G  PN  
Sbjct: 406 KGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAV 465

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            Y ++I          +A   L+EM   GL
Sbjct: 466 TYEIIIRSLFDKDENDKAEKLLLEMITRGL 495



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 100/205 (48%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           Q+ +++I  F K  + D A+ +F +         V+ YNSL+  LC+      A  L+  
Sbjct: 290 QSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDE 349

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  PD  TY+ L++A C +    +A   L ++ D+G  P +    +L+ GL   G 
Sbjct: 350 MHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGR 409

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A+ +   ++ +G+ +++ T+  +I   C +G     + M   + + G   +  TY+I
Sbjct: 410 PEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEI 469

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I ++      D+A +LL  ++  G
Sbjct: 470 IIRSLFDKDENDKAEKLLLEMITRG 494



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 2/159 (1%)

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           + T CK G+V+    ++ ++ K G   +V TY  L+        +++A  + +N+ + G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  +I G  +    D A   F EM  +   PN   Y  LI    + G+   A  
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALK 345

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            + EM + G  P    +  + D L  C  H   + I LL
Sbjct: 346 LVDEMHDRGQPPDIITYSSLLDAL--CKNHPGDKAIALL 382



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 66/136 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++   K+   D A+ +  K      Q  +  Y  L+  LC+      A  +   +
Sbjct: 361 TYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDL 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG+  +  TY ++++ +C++G   EA   L +M + G  P     +++++ L +    
Sbjct: 421 LVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDEN 480

Query: 139 ESAKQMVNKMIKQGFV 154
           + A++++ +MI +G +
Sbjct: 481 DKAEKLLLEMITRGLL 496


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 131/274 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G ++NA E+F++         V+ YN+L+  LC+ +    A  L+ RM R G  P+  +Y
Sbjct: 283 GKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISY 342

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +CS G + +A     +M   G +P +   ++L+ G   A        MV +M  
Sbjct: 343 NTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEA 402

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G      T+  L++ + +S  +E   ++Y S+ K GL AD+  Y +LI  +   G + E
Sbjct: 403 RGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKE 462

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +L  +L E   KP   +Y  +I G  + G    A     EM   G  PN   Y   I 
Sbjct: 463 ASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQ 522

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +  +  ++ EA   L +M E+GL P    +++++
Sbjct: 523 ILCKDEKWTEAEVLLKDMIELGLKPSISIWNMIS 556



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 119/279 (42%), Gaps = 1/279 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K    + A  VFN+ T  N +  V  +  ++   CEV      + ++ +M   G  P+  
Sbjct: 142 KSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVV 200

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  L++  C +G +   ++   +M +           +L+ G    G  +   ++  KM
Sbjct: 201 VYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKM 260

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G V ++ T+NS+I   C  G++    E++  + + G+  +V TY  LI  + +   +
Sbjct: 261 KLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRV 320

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA RL+  +  DG  P    Y  +I G    G  D A   F++MK  G  P+   Y +L
Sbjct: 321 LEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNIL 380

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           I             + + EM   GL+P    + ++ D L
Sbjct: 381 IAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDAL 419



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 126/289 (43%), Gaps = 2/289 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   ++  +  T +++I  F K GL  + +E++ K         V  YNS++   C    
Sbjct: 225 MGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK 284

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A+ L   M  +G   +  TY  L+   C   ++ EA+  +  M   G +P +   + 
Sbjct: 285 LNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNT 344

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G  + G L+ A  + N+M   G    L T+N LI    ++       +M   +   G
Sbjct: 345 LIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARG 404

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L     TY IL+ A+ ++  I++AF++  ++ + G      +Y  +I G+   G   +A 
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 248 CFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F  +      PN  +Y TM+   C  G  +  A   L EM E G+ P
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSY-RALRLLKEMGENGMVP 512



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 121/268 (45%), Gaps = 1/268 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           VL++ +++ A    +L   A     +MI +G VP   T+  L+     S    +A     
Sbjct: 95  VLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFN 154

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E +       V    ++++G    GYL+   +++ +M + G   ++  + +LI+  CK+G
Sbjct: 155 E-TKGNVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNG 213

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E   +++Y + +L + A+  TY +LI    K G+  +   L   +   G  P    Y 
Sbjct: 214 DIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYN 273

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I      G+ ++AF  F EM+ +G   N   Y  LI    +  R +EA   +  M   
Sbjct: 274 SMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRD 333

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           GL+P    ++ + DG  + G  D A  +
Sbjct: 334 GLSPNLISYNTLIDGYCSIGNLDKASSL 361



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 124/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS +    + +I+   K+G ++   ++F K    +       Y  L+    ++ L
Sbjct: 190 MEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGL 249

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L  +M   G VP+  TY  ++   C+ GK+  A E   EM ++G    V   + 
Sbjct: 250 KKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNT 309

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL     +  A++++ +M + G   +L ++N+LI+  C  G ++    ++  +   G
Sbjct: 310 LIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSG 369

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               ++TY ILI   S+A        ++  +   G  P    Y  ++  + R    + AF
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAF 429

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             +S M+  G   +  +Y +LI      G   EA+     + EM L P
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKP 477



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 136/322 (42%), Gaps = 3/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+     K  N+ +   +  ++I+   + G +D   EV  +         V++Y +L+  
Sbjct: 150 WRVFNETKG-NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDG 208

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+         L  +M     V ++ TY +L+N +   G  ++  E  ++M   G  P 
Sbjct: 209 CCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPN 268

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + ++    N G L +A ++ ++M ++G   ++ T+N+LI  +C+   V     +  
Sbjct: 269 VYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMC 328

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + GL  ++ +Y  LI      G +D+A  L + +   G  P  + Y  +I G     
Sbjct: 329 RMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAK 388

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                     EM+ +G  P++  YT+L+    R     +A      M + GL      + 
Sbjct: 389 NSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYG 448

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
           ++  GL  C   D+ E  +L +
Sbjct: 449 VLIHGL--CVVGDMKEASKLFK 468



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 83/194 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S S  T +++I  F +        ++  +  A       + Y  L+ AL     
Sbjct: 365 MKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDN 424

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +   M + G V D   Y +L++  C  G M+EA +  + + +    P     + 
Sbjct: 425 IEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNT 484

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G    A +++ +M + G V ++ ++NS I+ +CK  +      +   + +LG
Sbjct: 485 MIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELG 544

Query: 188 LCADVSTYKILIPA 201
           L   +S + ++  A
Sbjct: 545 LKPSISIWNMISKA 558


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 2/300 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L ++P   + +I      G V +AV V              ++ +++   
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A      M ++G   D  TY  L+N  C +G+++EA+  LQEM DKG +   
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +  A  + NKM+++    ++ T+ +L + +CK G+V    E+ + 
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C  GL  ++ TY  LI  + KAG +++A R + ++ E G KP    Y  II  + +  +
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKE 545

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFD 301
            D A     EM  KG  P    Y +L+      GR VE    L+E M E  + P +  ++
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR-VEGGKRLLEWMLEKNIHPNTTTYN 604



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 145/322 (45%), Gaps = 13/322 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ Y +S SP++ + ++        +D AV++F +    N       YN LL ALC    
Sbjct: 217 LRQYGISPSPESCNAVLCRLP----LDEAVQLFQELPEKN----TCSYNILLKALCTAGR 268

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M      PD  TY I+V+ +C+  ++  A + L EM+ +G          
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L + G +  A ++V  M+  G VLD   F +++   C+ G++      +  + K G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L AD  TY  LI  + +AG + EA R+L  + + G       Y  +I G  + G+  +AF
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              ++M  K   PN   YT L     + G    A   L EM   GL      ++ + +GL
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 308 KNCGKHDLAEK--IELLEVSLR 327
              G  + A +  I++ E  L+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLK 527



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 2/259 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + + +   K G V  A E+ ++  +   +  +  YNSL+  LC+      A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +  M   G  PD  TY  ++ A C S ++  A   LQEM DKG  P +   ++L+ G 
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +E  K+++  M+++    +  T+NSL++  C    ++   E+Y  +    +  + 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +TY ILI    KA  + EA      ++E G +   S Y  +I+ + ++ +F +A   F +
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 253 MKIKGHPPNRPVYTMLITM 271
           M+ +       VY   I +
Sbjct: 696 MRKERLTAEPDVYNFYIDL 714



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  + + +     + ++  F + G +  A   F++          + Y +L+  L
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGL 400

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  +++ M  KG   D  TY +L++ +C  GKM EA     +M  K   P V
Sbjct: 401 CRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L  GL   G + +A +++++M  +G  L++ T+NSLI  +CK+G +E  +     
Sbjct: 461 VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMID 520

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  DV TY  +I A+ ++  +D A  LL  +++ G KP    Y  ++ G    G+
Sbjct: 521 MDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 580

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +        M  K   PN   Y  L+
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 126/303 (41%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   L V   T +++I+ + K G +  A  V NK         V+ Y +L   L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L+  M  KG   +  TY  L+N  C +G + +A   + +M + G  P V
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++  L  +  L+ A  ++ +M+ +G    + T+N L+   C SG VE    +   
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  + +TY  L+        +     +   ++     P  + Y  +IKG  +   
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A  F SEM  KG       Y  LI +  +  +F EA     +M +  LT     ++ 
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNF 710

Query: 303 VTD 305
             D
Sbjct: 711 YID 713



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T + +I    + G +  A  V  +          + Y  L+   C+V  
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +  +M++K   P+  TY  L +  C  G +  A E L EM  KG    +   + 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG LE A + +  M + G   D+ T+ ++I  +C+S E++    +   +   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY +L+     +G ++   RLL  ++E    P  + Y  ++K            
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             +  M  +   PN   Y +LI    +     EA  +  EM E G
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ A+           +  V  Y +++ ALC+ K    A++L++ M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY +L+N +C SG++   +  L+ M +K  +P     + L++       +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +S  ++   M+ Q  V +  T+N LI+  CK+  ++  +  +  + + G     S+Y  L
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           I  ++K     EA RL   + ++     P +Y   I   F     +       E+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Glycine max]
          Length = 1034

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 152/322 (47%), Gaps = 3/322 (0%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK- 66
            M+  +  ++ +T +++I  +G+ GL + A+  F +  A +       Y  L+ ALC  K 
Sbjct: 707  MRRNSYPITSETWTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRSTYKYLIIALCGRKG 766

Query: 67   -LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A  +   MI  G+VPDK      +   C  G++ +A+     + + G+  P+   
Sbjct: 767  RKVDDALKIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVPL-SY 825

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L ++ L  AG +E A  +  ++ ++ F++D  TF S++  + + G +E  +     + +
Sbjct: 826  SLFIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQ 885

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             G+   +  +  LI    K   +++A      ++  G++P    Y+ +I+G    G+  D
Sbjct: 886  NGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPID 945

Query: 246  AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            A+  F  MK+KG  P+   Y+M +T   + G+  E    + EM + G+ P +  F  V  
Sbjct: 946  AWDIFYRMKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVVY 1005

Query: 306  GLKNCGKHDLAEKIELLEVSLR 327
            GL   GKHDLA  +   +  LR
Sbjct: 1006 GLNREGKHDLARVVLQQKSELR 1027



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 139/353 (39%), Gaps = 36/353 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    +     T ++II  +GK   +  A+  F       C+   + Y +++ +L
Sbjct: 211 KLVEEMDECGIQKDVNTWTIIINHYGKARKISEALLAFENMKRCGCEPDAVSYGAIICSL 270

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN--------------------------- 95
           C       A      M+RK  V D R Y +++N                           
Sbjct: 271 CSAGKRDIAMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEK 330

Query: 96  --------AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
                   ++C SG + EA E ++E+  K  +      + LV+GL  AG +  A ++V+ 
Sbjct: 331 CVHGCMLKSFCISGSIEEALELIRELKSKDLDLEPENYETLVRGLCKAGRITDALEIVDI 390

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M ++  V D      +I       +V+  +E++  + + G    +STY  L+  + +   
Sbjct: 391 MKRRDMV-DGRVHGIIINGYLGRNDVDRALEVFQCMKESGCVPTISTYTELMLHLFRLDR 449

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
            +EA  L   ++  G KP       ++ G   +    DA+  F  M+ +G  P    + +
Sbjct: 450 YEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQNHISDAWKMFKSMECQGIKPTWKSFAV 509

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
            I    +  +  +    L EM         +  DLV   +KN G+  + EKI+
Sbjct: 510 FIKELCKASQTDDIVKVLHEMQASKSRIQDKVLDLVITWMKNKGELTVIEKIQ 562



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 110/276 (39%), Gaps = 36/276 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L    E K F     L+  M   G   D  T+ I++N +  + K+ EA    + M 
Sbjct: 193 YNTMLHIAREAKEFGLVKKLVEEMDECGIQKDVNTWTIIINHYGKARKISEALLAFENMK 252

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV- 173
             G  P       ++  L +AG  + A +  N+M+++  VLD+  +  ++  + +SG++ 
Sbjct: 253 RCGCEPDAVSYGAIICSLCSAGKRDIAMEFYNEMVRKDMVLDVRLYKMVMNCMARSGDIA 312

Query: 174 ----------------EFCVE--MYYSVCKLG----------------LCADVSTYKILI 199
                           E CV   M  S C  G                L  +   Y+ L+
Sbjct: 313 AVSLLGNDMIRLSVMPEKCVHGCMLKSFCISGSIEEALELIRELKSKDLDLEPENYETLV 372

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + KAG I +A  ++ ++++        ++  II G   R   D A   F  MK  G  
Sbjct: 373 RGLCKAGRITDALEIV-DIMKRRDMVDGRVHGIIINGYLGRNDVDRALEVFQCMKESGCV 431

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YT L+    R  R+ EA     EM   G+ P
Sbjct: 432 PTISTYTELMLHLFRLDRYEEACMLYDEMLGKGIKP 467



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 65/143 (45%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            +++MK   ++ +    + +I  F K   V+ A+E F +      +  ++ Y++L+     
Sbjct: 880  VDVMKQNGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMN 939

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            V     A+ +  RM  KG  PD +TY++ +   C  GK  E    + EM D G  P    
Sbjct: 940  VGRPIDAWDIFYRMKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTIN 999

Query: 125  RDLLVQGLLNAGYLESAKQMVNK 147
               +V GL   G  + A+ ++ +
Sbjct: 1000 FRTVVYGLNREGKHDLARVVLQQ 1022



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/251 (19%), Positives = 108/251 (43%), Gaps = 15/251 (5%)

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEF------LQEMSDKGFNPPVRGRDLLVQGL 132
           ++ GF    RTY  +++        REA+EF      ++EM + G    V    +++   
Sbjct: 182 LKDGFSHTTRTYNTMLHI------AREAKEFGLVKKLVEEMDECGIQKDVNTWTIIINHY 235

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  +  A      M + G   D  ++ ++I ++C +G+ +  +E Y  + +  +  DV
Sbjct: 236 GKARKISEALLAFENMKRCGCEPDAVSYGAIICSLCSAGKRDIAMEFYNEMVRKDMVLDV 295

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             YK+++  ++++G I     L ++++     P   ++  ++K     G  ++A     E
Sbjct: 296 RLYKMVMNCMARSGDIAAVSLLGNDMIRLSVMPEKCVHGCMLKSFCISGSIEEALELIRE 355

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +K K        Y  L+    + GR  +A   +  M    +    R   ++ +G    G+
Sbjct: 356 LKSKDLDLEPENYETLVRGLCKAGRITDALEIVDIMKRRDMVD-GRVHGIIINGY--LGR 412

Query: 313 HDLAEKIELLE 323
           +D+   +E+ +
Sbjct: 413 NDVDRALEVFQ 423


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 127/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T    +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  T  +L+N  C   KM EA E   EM DKG  P       L+ G   +G ++
Sbjct: 199 ASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M++QG+  DL T+N+LI  +C+ G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF L   ++E+  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G    A+  L EM   G  P
Sbjct: 379 PENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + +       M
Sbjct: 138 FFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G +P V    +L+ GL     ++ A ++ N+M+ +G V +  TF +LI+  CKSG V
Sbjct: 198 HASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  + + G   D+ TY  LI  + + G + +A  L+  +   G KP    Y  +
Sbjct: 258 DLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 318 IDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +G   C + D+    +LL+
Sbjct: 378 KPENGTYTMIINGF--CKQGDVKTASKLLK 405



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 114/248 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  S  + + +I  + + G +D    +     A      V     L+  LC+      A 
Sbjct: 167 LRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEAN 226

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M+ KG VP+  T+  L++  C SG++  A E  ++M  +G++P +   + L+ GL
Sbjct: 227 ELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGL 286

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A+ ++ +M  +G   D  T+ +LI+  CK G++E   E+   + +  +  D 
Sbjct: 287 CRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDD 346

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  + + G   +A ++L  ++  G KP    Y  II G  ++G    A     E
Sbjct: 347 VAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKE 406

Query: 253 MKIKGHPP 260
           M+  GH P
Sbjct: 407 MQRDGHVP 414



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 52/104 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E+  +    + +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  P+  TY +++N +C  G ++ A + L+EM   G  P V
Sbjct: 373 LSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCV 416


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 150/313 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+ + +  +  T + ++ +  K G   +A +VF++         ++ YN+L+  LC  
Sbjct: 257 EKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCRE 316

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A  ++ +M   G  P+  TY  L++ +C   K+ +A    +++  +G +P +   
Sbjct: 317 MKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTY 376

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++LV G    G    A ++V +M ++G      T+  LI+T  +S  +E  +++  S+ +
Sbjct: 377 NILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEE 436

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LGL  DV TY +LI      G ++EA RL  ++VE   +P   +Y  ++ G  + G    
Sbjct: 437 LGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYR 496

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F EM+ K  PPN   Y  +I +  +  +  EA   + +M + G+ P     +L++ 
Sbjct: 497 ALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISR 556

Query: 306 GLKNCGKHDLAEK 318
              +     + E+
Sbjct: 557 AKNDSHSRSMDEE 569



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 3/268 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           LY  ++ A  + +    +      M+ KGFVP    +  L+     S    +   F  E 
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNES 155

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K     V    ++++G   AG +E +  ++ ++ + GF  ++  + +LI+  CK GE+
Sbjct: 156 KIKVV-LDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   ++++ + K GL A+  TY +LI  + K G+  + F +   + E G  P    Y  +
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCV 274

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +  + + G+  DAF  F EM+ +G   N   Y  LI    R  +  EA   + +M   G+
Sbjct: 275 MNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGI 334

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            P    ++ + DG   CG   L + + L
Sbjct: 335 NPNLITYNTLIDGF--CGVRKLGKALSL 360



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +  ++I+   + G ++ + ++  +   F     V++Y +L+   C+      A  L   M
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G V ++ TY +L++    +G  ++  E  ++M + G  P +   + ++  L   G  
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRT 284

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++M ++G   ++ T+N+LI  +C+  +     E+   +   G+  ++ TY  L
Sbjct: 285 KDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTL 344

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        + +A  L  +L   G  P    Y  ++ G  ++G    A     EM+ +G 
Sbjct: 345 IDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI 404

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  YT+LI    R     +A      M E+GLTP    + ++  G    G+ + A +
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASR 464

Query: 319 I 319
           +
Sbjct: 465 L 465



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 123/288 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ +  S +    + +I+   K G ++ A ++F +   F        Y  L+  L +  +
Sbjct: 189 LREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               + +  +M   G  P+  TY  ++N  C  G+ ++A +   EM ++G +  +   + 
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNT 308

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL        A +++++M   G   +L T+N+LI+  C   ++   + +   +   G
Sbjct: 309 LIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRG 368

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   + TY IL+    K G    A +++  + E G KP    Y  +I    R    + A 
Sbjct: 369 LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              S M+  G  P+   Y++LI      GR  EA+     M E    P
Sbjct: 429 QLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEP 476



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 112/234 (47%), Gaps = 4/234 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           V D  ++ I++   C +G++ ++ + L E+ + GF+P V     L+ G    G +E AK 
Sbjct: 160 VLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  +M K G V +  T+  LI  + K+G  +   EMY  + + G+  ++ TY  ++  + 
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLC 279

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G   +AF++   + E G       Y  +I G+ R  + ++A     +MK  G  PN  
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLI 339

Query: 264 VYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            Y  LI   CG   +  +A +   ++   GL+P    ++++  G   C K D +
Sbjct: 340 TYNTLIDGFCGV-RKLGKALSLCRDLKSRGLSPSLVTYNILVSGF--CKKGDTS 390


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + MK   L  +  T++++++   K   +D+A  +F       C+   + Y SL+  L   
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY L  +M+    +P+   Y  L+  +   G+  +  +   EM   G +P +   
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +  +  +  AG +E  + +  ++   GF+ D  ++  LI  + K+G      E++Y++ +
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D   Y  +I    K+G +++A++LL  +   GH+P    Y  +I G+ +  + D+
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDE 672

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A+  F E K KG   N  +Y+ LI   G+ GR  EA   + E+ + GLTP    ++ + D
Sbjct: 673 AYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732

Query: 306 GL 307
            L
Sbjct: 733 AL 734



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+  L +    H AY L   M  +G V D R Y  +++ +C SGK+ +A + L+EM 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V     ++ GL     L+ A  +  +   +G  L++  ++SLI+   K G ++
Sbjct: 647 TKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRID 706

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+ A+ KA  I EA     ++ +    P    Y+ +I
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILI 766

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+ AF F+ EM+ +G  PN   YT +I+   + G  VEA     +  E G  
Sbjct: 767 HGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV 826

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             S  ++ + +GL N  +   A ++
Sbjct: 827 ADSAIYNAIIEGLSNANRASDAYRL 851



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 138/310 (44%), Gaps = 1/310 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    MK   L +   T + +I    K   ++ AVE+F          C   YN+++  
Sbjct: 290 WKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R  RKG +P   +Y  +++     G++ EA +  +EM      P 
Sbjct: 350 YGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PN 408

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++++  L  AG LE+A  + + M   G   ++ T N +++ +CK+  ++    ++ 
Sbjct: 409 LSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFE 468

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       D  TY  LI  + + G +DEA++L   +++    P   +Y  +I+  F+ G
Sbjct: 469 GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +D    ++EM   G  P+  +    +    + G   +      E+  +G  P +R + 
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 302 LVTDGLKNCG 311
           ++  GL   G
Sbjct: 589 ILIHGLVKAG 598



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  +L       ++ I+ FGK G VD A + F++  A       + Y S++  LC+
Sbjct: 258 LDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCK 317

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A  L   M +   VP    Y  ++  +  +GK  +A   L+    KG  P V  
Sbjct: 318 ADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVS 377

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A +   +M K+  + +L T+N +I+ +CK+G++E  + +  ++ 
Sbjct: 378 YNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  +V T  I++  + KA  +D+A  +   L     +P    Y  +I+G+ R G+ D
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +A+  + +M      PN  VYT LI    + GR  +      EM  +G +P
Sbjct: 497 EAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 129/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A+ V +          V+  N ++  LC+ +    A ++   +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY  L+      G++ EA +  ++M D    P       L++     G  
Sbjct: 471 DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK 530

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++ N+M++ G   DL   N+ ++ + K+GE+E    ++  +  LG   D  +Y IL
Sbjct: 531 EDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG   EA+ L + + E G       Y  +I G  + G+ + A+    EMK KGH
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P    Y  +I    +  R  EA     E    G+      +  + DG    G+ D A
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 138/319 (43%), Gaps = 1/319 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M+    +V+    + +I  F + G VD A+ + ++  + + +  V+LYN  + 
Sbjct: 219 MLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCID 278

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +      A+     M   G V D  TY  ++   C + ++ EA E  + M      P
Sbjct: 279 CFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G   AG  E A  ++ +  ++G +  + ++N ++  + + G+V+  ++ +
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKF 398

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  ++STY I+I  + KAG ++ A  +   + + G  P       ++  + + 
Sbjct: 399 EEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKA 457

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + DDA   F  +  K   P+   Y  LI   GR GR  EA     +M +    P +  +
Sbjct: 458 QRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             +      CG+ +   KI
Sbjct: 518 TSLIRNFFKCGRKEDGHKI 536



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 2/298 (0%)

Query: 12  NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL   P  ++ +++I    K G    A E+F       C      YN+++   C+    +
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            AY L+  M  KG  P   TY  +++      ++ EA    +E   KG    V     L+
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G    G ++ A  ++ +++++G   ++ T+N L++ + K+ E+   +  + S+  L   
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCT 756

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  TY ILI  + K    ++AF     + + G KP    Y  +I G+ + G   +A   
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           F + K KG   +  +Y  +I       R  +A     E    G +  ++   ++ D L
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSL 874



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 37/320 (11%)

Query: 33  VDNAVEVFNKCTAFNCQ-QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           V+NAV  F        +  C   YNSLL  +   + F+    ++  M   GF P   T  
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCI 169

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            +V ++  S K+REA  F+Q M    F P       L+  L  +   +    +  +M + 
Sbjct: 170 EIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQEL 229

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G+ +++  F +LI    + G V+  + +   +    L  DV  Y + I    KAG +D A
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 212 FRLLHNLVEDG---------------------------------HKPFPSLYA--PIIKG 236
           ++  H +  +G                                 +K  P  YA   +I G
Sbjct: 290 WKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
               G+F+DA+      + KG  P+   Y  +++  GR G+  EA     EM +  +  +
Sbjct: 350 YGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNL 409

Query: 297 SRCFDLVTDGLKNCGKHDLA 316
           S  ++++ D L   GK + A
Sbjct: 410 S-TYNIMIDMLCKAGKLETA 428



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 98/215 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  +++KG  P+  T+  L++A   + ++ EA    Q M D    P 
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQGF  ++ T+ ++I  + K+G +     ++ 
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFE 818

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
              + G  AD + Y  +I  +S A    +A+RL  
Sbjct: 819 KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   + ++    S +I+ FGK G +D A  +  +         V  +N LL AL + 
Sbjct: 678 EEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A    + M      P+  TY+IL++  C   K  +A  F QEM  +GF P V   
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL  AG +  A  +  K  ++G V D   +N++IE +  +        ++     
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEA 211
            G      T  +L+ ++ KA  I++A
Sbjct: 858 KGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 143/302 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M   N+  +  T S +I+ F K G +  A E++N+  A       + Y+SL+   
Sbjct: 300 KMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGF 359

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  ++  M+ KG  P+  TY+IL+N++C + ++        E+S KG     
Sbjct: 360 CKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADT 419

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LVQG   +G L  AK++  +M+ +G    + T+  L++ +C +GE++  +E++  
Sbjct: 420 VTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEK 479

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K  +   +  Y I+I  +  A  +D+A+ L  +L   G KP    Y  +I G+ ++G 
Sbjct: 480 MQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGS 539

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A   F +MK  G  P+   Y +LI     G   + +   + EM   G    +    +
Sbjct: 540 LSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKM 599

Query: 303 VT 304
           V 
Sbjct: 600 VV 601



 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 152/351 (43%), Gaps = 37/351 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  ++  S    S++I+   K G +D+A+ +FN+      +  V+ Y+S++  LC    
Sbjct: 235 MEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGR 294

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +     ++R MI +  +P+  T++ L++ +   GK+ EA+E   EM  +G  P       
Sbjct: 295 WDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSS 354

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A QM++ M+ +G   ++ T++ LI + CK+  V+  + ++  +   G
Sbjct: 355 LIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKG 414

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP-------------------- 227
           L AD  TY  L+    ++G ++ A  L   +V  G  P                      
Sbjct: 415 LVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKAL 474

Query: 228 ---------------SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                           +Y  II GM    + DDA+  F  + +KG  P+   Y ++I   
Sbjct: 475 EIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGL 534

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + G   EA     +M E G  P    ++++     + G   +   +EL+E
Sbjct: 535 CKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRA--HLGGSGVISSVELIE 583



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 135/269 (50%), Gaps = 2/269 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N ++   C  +    A++++ R ++ GF P+  T++ L+N +C  G++ EA   +  M +
Sbjct: 108 NIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVE 167

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
             + P V   + L+ GL   G +  A  ++++M+K G   +  T+  ++  +CKSG    
Sbjct: 168 MKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTAL 227

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            ++++  + +  + A V  Y I+I ++ K G +D+A  L + +   G K     Y+ II 
Sbjct: 228 ALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIG 287

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+   G++DD      EM  +   PN   ++ LI +  + G+ +EA     EM   G+ P
Sbjct: 288 GLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAP 347

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            +  +  + DG   C ++ L E  ++L++
Sbjct: 348 DTITYSSLIDGF--CKENRLGEANQMLDL 374



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ +I      G V  A+ + ++   + C+   + Y  +L  +C+      A  L R+M
Sbjct: 176 TVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKM 235

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +        Y+I++++ C  G + +A     EM  KG    V     ++ GL N G  
Sbjct: 236 EERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRW 295

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +M+ +MI +  + ++ TF++LI+   K G++    E+Y  +   G+  D  TY  L
Sbjct: 296 DDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSL 355

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   + EA ++L  +V  G +P    Y+ +I    +  + D+    F E+  KG 
Sbjct: 356 IDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGL 415

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y  L+    + G+   A     EM   G+ P    + ++ DGL  C   +L + 
Sbjct: 416 VADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGL--CDNGELQKA 473

Query: 319 IELLE 323
           +E+ E
Sbjct: 474 LEIFE 478



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 137/312 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M  Y    +  T   ++    K G    A+++F K    + +  V+ Y+ ++ +LC+
Sbjct: 197 IDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCK 256

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A +L   M  KG   D   Y+ ++   C+ G+  +  + L+EM  +   P V  
Sbjct: 257 DGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVT 316

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+   +  G L  AK++ N+M+ +G   D  T++SLI+  CK   +    +M   + 
Sbjct: 317 FSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMV 376

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++ TY ILI +  KA  +D   RL   +   G       Y  +++G  + G+ +
Sbjct: 377 SKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLN 436

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +G PP+   Y +L+      G   +A     +M +  +      ++++ 
Sbjct: 437 VAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIII 496

Query: 305 DGLKNCGKHDLA 316
            G+ N  K D A
Sbjct: 497 HGMCNASKVDDA 508



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 132/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F   G V  AV + ++      +  V+  N+L+  LC       A  LI RM
Sbjct: 141 TFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRM 200

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G   ++ TY  ++N  C SG    A +  ++M ++     V    +++  L   G L
Sbjct: 201 VKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNL 260

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + N+M  +G   D+  ++S+I  +C  G  +   +M   +    +  +V T+  L
Sbjct: 261 DDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSAL 320

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA  L + +V  G  P    Y+ +I G  +  +  +A      M  KG 
Sbjct: 321 IDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGC 380

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y++LI    +  R         E++  GL   +  ++ +  G    GK ++A++
Sbjct: 381 EPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKE 440

Query: 319 I 319
           +
Sbjct: 441 L 441



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 36/229 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I  + K   VDN + +F + ++       + YN+L+   C+    + A  L + M
Sbjct: 386 TYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEM 445

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------------------------- 113
           + +G  P   TY IL++  C +G++++A E  ++M                         
Sbjct: 446 VSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKV 505

Query: 114 ----------SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                     S KG  P V   ++++ GL   G L  A  +  KM + G      T+N L
Sbjct: 506 DDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNIL 565

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           I        V   VE+   +   G  AD ST K+++  +S  G +D+ F
Sbjct: 566 IRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLSD-GRLDKTF 613



 Score = 45.1 bits (105), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 63/166 (37%)

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   ++ T N +I   C+  ++ F   +     K G   +  T+  LI      G + E
Sbjct: 98  NGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSE 157

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  +VE  ++P       +I G+  +G+  +A      M   G   N   Y  ++ 
Sbjct: 158 AVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLN 217

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              + G    A +   +M E  +      + +V D L   G  D A
Sbjct: 218 RMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDA 263


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 142/302 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + MK   L  +  T++++++   K   +D+A  +F       C+   + Y SL+  L   
Sbjct: 433 DAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY L  +M+    +P+   Y  L+  +   G+  +  +   EM   G +P +   
Sbjct: 493 GRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLL 552

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +  +  +  AG +E  + +  ++   GF+ D  ++  LI  + K+G      E++Y++ +
Sbjct: 553 NTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKE 612

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D   Y  +I    K+G +++A++LL  +   GH+P    Y  +I G+ +  + D+
Sbjct: 613 QGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDE 672

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A+  F E K KG   N  +Y+ LI   G+ GR  EA   + E+ + GLTP    ++ + D
Sbjct: 673 AYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLD 732

Query: 306 GL 307
            L
Sbjct: 733 AL 734



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 128/265 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+  L +    H AY L   M  +G V D R Y  +++ +C SGK+ +A + L+EM 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V     ++ GL     L+ A  +  +   +G  L++  ++SLI+   K G ++
Sbjct: 647 TKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRID 706

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+ A+ KA  I EA     ++ +    P    Y+ +I
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILI 766

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+ AF F+ EM+ +G  PN   YT +I+   + G  VEA     +  E G  
Sbjct: 767 HGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGV 826

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             S  ++ + +GL N  +   A ++
Sbjct: 827 ADSAIYNAIIEGLSNANRASDAYRL 851



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 138/310 (44%), Gaps = 1/310 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    MK   L +   T + +I    K   ++ AVE+F          C   YN+++  
Sbjct: 290 WKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R  RKG +P   +Y  +++     G++ EA +  +EM      P 
Sbjct: 350 YGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAI-PN 408

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++++  L  AG LE+A  + + M   G   ++ T N +++ +CK+  ++    ++ 
Sbjct: 409 LSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFE 468

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       D  TY  LI  + + G +DEA++L   +++    P   +Y  +I+  F+ G
Sbjct: 469 GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +D    ++EM   G  P+  +    +    + G   +      E+  +G  P +R + 
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 302 LVTDGLKNCG 311
           ++  GL   G
Sbjct: 589 ILIHGLVKAG 598



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 138/291 (47%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  +L       ++ I+ FGK G VD A + F++  A       + Y S++  LC+
Sbjct: 258 LDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCK 317

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A  L   M +   VP    Y  ++  +  +GK  +A   L+    KG  P V  
Sbjct: 318 ADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVS 377

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A +   +M K+  + +L T+N +I+ +CK+G++E  + +  ++ 
Sbjct: 378 YNCILSCLGRKGQVDEALKKFEEM-KKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  +V T  I++  + KA  +D+A  +   L     +P    Y  +I+G+ R G+ D
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +A+  + +M      PN  VYT LI    + GR  +      EM  +G +P
Sbjct: 497 EAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSP 547



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 129/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A+ V +          V+  N ++  LC+ +    A ++   +
Sbjct: 411 TYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGL 470

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY  L+      G++ EA +  ++M D    P       L++     G  
Sbjct: 471 DHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRK 530

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++ N+M++ G   DL   N+ ++ + K+GE+E    ++  +  LG   D  +Y IL
Sbjct: 531 EDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTIL 590

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG   EA+ L + + E G       Y  +I G  + G+ + A+    EMK KGH
Sbjct: 591 IHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH 650

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P    Y  +I    +  R  EA     E    G+      +  + DG    G+ D A
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/319 (21%), Positives = 138/319 (43%), Gaps = 1/319 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M+    +V+    + +I  F + G VD A+ + ++  + + +  V+LYN  + 
Sbjct: 219 MLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCID 278

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +      A+     M   G V D  TY  ++   C + ++ EA E  + M      P
Sbjct: 279 CFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVP 338

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G   AG  E A  ++ +  ++G +  + ++N ++  + + G+V+  ++ +
Sbjct: 339 CAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKF 398

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  ++STY I+I  + KAG ++ A  +   + + G  P       ++  + + 
Sbjct: 399 EEMKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKA 457

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + DDA   F  +  K   P+   Y  LI   GR GR  EA     +M +    P +  +
Sbjct: 458 QRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             +      CG+ +   KI
Sbjct: 518 TSLIRNFFKCGRKEDGHKI 536



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 2/298 (0%)

Query: 12  NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL   P  ++ +++I    K G    A E+F       C      YN+++   C+    +
Sbjct: 577 NLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVN 636

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            AY L+  M  KG  P   TY  +++      ++ EA    +E   KG    V     L+
Sbjct: 637 KAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G    G ++ A  ++ +++++G   ++ T+N L++ + K+ E+   +  + S+  L   
Sbjct: 697 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCT 756

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  TY ILI  + K    ++AF     + + G KP    Y  +I G+ + G   +A   
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           F + K KG   +  +Y  +I       R  +A     E    G +  ++   ++ D L
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSL 874



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 37/320 (11%)

Query: 33  VDNAVEVFNKCTAFNCQ-QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           V+NAV  F        +  C   YNSLL  +   + F+    ++  M   GF P   T  
Sbjct: 110 VNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCI 169

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG-----------RD-------------- 126
            +V ++  S K+REA  F+Q M    F P               RD              
Sbjct: 170 EIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQEL 229

Query: 127 ----------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
                      L++     G +++A  ++++M       D+  +N  I+   K+G+V+  
Sbjct: 230 GYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMA 289

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            + ++ +   GL  D  TY  +I  + KA  ++EA  L  ++ ++   P    Y  +I G
Sbjct: 290 WKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMG 349

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
               G+F+DA+      + KG  P+   Y  +++  GR G+  EA     EM +  +  +
Sbjct: 350 YGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNL 409

Query: 297 SRCFDLVTDGLKNCGKHDLA 316
           S  ++++ D L   GK + A
Sbjct: 410 S-TYNIMIDMLCKAGKLETA 428



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 98/215 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  +++KG  P+  T+  L++A   + ++ EA    Q M D    P 
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQGF  ++ T+ ++I  + K+G +     ++ 
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFE 818

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
              + G  AD + Y  +I  +S A    +A+RL  
Sbjct: 819 KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFE 853



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 90/206 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   + ++    S +I+ FGK G +D A  +  +         V  +N LL AL + 
Sbjct: 678 EEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 737

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A    + M      P+  TY+IL++  C   K  +A  F QEM  +GF P V   
Sbjct: 738 EEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTY 797

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL  AG +  A  +  K  ++G V D   +N++IE +  +        ++     
Sbjct: 798 TTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARL 857

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEA 211
            G      T  +L+ ++ KA  I++A
Sbjct: 858 KGCSIYTKTCVVLLDSLHKAECIEQA 883


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 142/299 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S ++    K G V  A ++F++ T       V+ YNS++ ALC+ +    A  ++R+M+ 
Sbjct: 215 STVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG 274

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD  TY  L++ + + G+ ++A    +EM+ +G  P        V  L   G +E 
Sbjct: 275 NGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A++  + M+ +G  L++ ++++L+     +G +     ++  + + G+  +   + IL+ 
Sbjct: 335 AREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVN 394

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
             +K GM+ EA  +  ++ + G  P    Y  +I    R G  DDA   F+ M  KG  P
Sbjct: 395 GYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEP 454

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           N  VY  LI      G  V+A   + E+   GL P    F  + + L   G+   A++I
Sbjct: 455 NFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRI 513



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 2/307 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S  +    KHG ++ A E F+   A   +  ++ Y++LL              L   M
Sbjct: 318 TCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLM 377

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G VP++  + ILVN +   G +REA    ++M  +G NP V     ++      G +
Sbjct: 378 VRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSM 437

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A    N MI +G   +   +  LI+  C  G++    E+ Y +   GL   + ++  L
Sbjct: 438 DDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASL 497

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + EA R+   ++  G K   +++  +I G    G+  +AF     M   G 
Sbjct: 498 INHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGI 557

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+  C + GR  +      E+   G+ P +  + ++ DGL + G+   A++
Sbjct: 558 EPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKE 617

Query: 319 I--ELLE 323
           +  E++E
Sbjct: 618 MFQEMIE 624



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 134/303 (44%), Gaps = 5/303 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M     LM    +  +    ++++  + K G+V  A+ +F           VL Y +++ 
Sbjct: 370 MSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIH 429

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C +     A      MI KG  P+   Y  L+  +C+ G + +A+E + E+ +KG  P
Sbjct: 430 AFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGP 489

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+  L   G +  A+++ + +I+ G   D+  F SLI+  C  G++     ++
Sbjct: 490 CILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVH 549

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++  +G+  D+ TY  L+    K G ID+   L   L+  G KP    Y  I+ G+F  
Sbjct: 550 DAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHA 609

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+   A   F EM   G     P Y++L+T   R     EA     ++  M +      F
Sbjct: 610 GRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVK-----F 664

Query: 301 DLV 303
           D+V
Sbjct: 665 DIV 667



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 126/276 (45%), Gaps = 2/276 (0%)

Query: 12  NLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  + P  LS   +I    K G V  A  +F+       +  V ++ SL+   C +    
Sbjct: 484 NKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMS 543

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A+ +   M+  G  PD  TY  LVN  C +G++ +     +E+  KG  P      +++
Sbjct: 544 EAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIIL 603

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL +AG   +AK+M  +MI+ G  + + T++ L+  +C++   E  + ++  +C + + 
Sbjct: 604 DGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVK 663

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+    I+I  + KA   +EA  L  ++ + G  P    Y  +++ + + G  ++A   
Sbjct: 664 FDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGV 723

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           FS M   G  P      +++      G  V+A  Y+
Sbjct: 724 FSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYM 759



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 123/266 (46%), Gaps = 3/266 (1%)

Query: 33  VDNAVEV-FNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VP-DKRT 89
            D AV+V F++     C    + Y+++L ++C+      A  ++R  +++G   P +   
Sbjct: 154 TDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVV 213

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y+ +V+     GK+ EA +   EM+ +G  P V   + ++  L  A  ++ A+ ++ +M+
Sbjct: 214 YSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMV 273

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G   D  T+N+LI      G+ +  V M+  +   G+  +  T    +  + K G I+
Sbjct: 274 GNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIE 333

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA     +++  GHK     Y+ ++ G    G   D    F+ M   G  PN+ V+ +L+
Sbjct: 334 EAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILV 393

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTP 295
               + G   EA     +M + GL P
Sbjct: 394 NGYAKCGMVREAMFIFEDMQKRGLNP 419



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 36  AVEVFNKCTAFNCQQCVL----LYNSLLFALCEVKLFHGAYALIRRMIRKGF-------- 83
           AV +FN+ +     +  L     Y+ L+   C  +    A+A    ++R+G         
Sbjct: 83  AVALFNRMSTGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVS 142

Query: 84  ----------------------------VPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
                                       VPD  +Y+ ++ + C  G+ + A + L+    
Sbjct: 143 SLLRGLCDAKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVK 202

Query: 116 KGFNPP--VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +G   P  V     +V GL   G +  A  + ++M +QG   ++ T+NS+I  +CK+  V
Sbjct: 203 QGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAV 262

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +    +   +   G+  D  TY  LI   S  G   +A R+   +   G  P     +  
Sbjct: 263 DKAQGILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTF 322

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +  + + G+ ++A  FF  M  KGH  N   Y+ L+      G  V+ +N    M   G+
Sbjct: 323 VAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGI 382

Query: 294 TPISRCFDLVTDGLKNCG 311
            P    F+++ +G   CG
Sbjct: 383 VPNQHVFNILVNGYAKCG 400



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 5/204 (2%)

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE- 178
           P V    +L+     A  L+ A      +++QG   D+   +SL+  +C +   +  V+ 
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIK 235
           +++ + +LG   D  +Y  ++ +V   G    A  +L   V+ G    P    +Y+ ++ 
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQG-GGCPCNVVVYSTVVH 219

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+F+ G+  +A   F EM  +G PPN   Y  +I    +     +A   L +M   G+ P
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQP 279

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
            +  ++ +  G    G+   A ++
Sbjct: 280 DNVTYNTLIHGYSTLGQWKQAVRM 303



 Score = 46.6 bits (109), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/158 (20%), Positives = 71/158 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++V+  T S+++    ++   + A+ VF K  A N +  +++ N ++  + + + 
Sbjct: 622 MIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARR 681

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   +   G VP  +TY I++      G + EA+     M   G +P     ++
Sbjct: 682 REEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINV 741

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           +V+ LL  G +  A   + ++  +  + +  T + L+ 
Sbjct: 742 IVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLS 779


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 139/305 (45%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++ VS  T S++I    K G++  A  +  + T   C   +  Y +++  L + K    A
Sbjct: 219 SMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEA 278

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            AL+ ++   G  P   TY  L+N  C  G++ EA + L+++ D G  P V     L+ G
Sbjct: 279 VALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDG 338

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L        A ++  +M  +G  LD   + +LI  + ++G++     +Y ++   G   D
Sbjct: 339 LGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPD 398

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V T   +I  +SKAG I  A R+  ++   G  P   +Y+ +I G+ +  + D A    +
Sbjct: 399 VVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLA 458

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +MK     P+   Y +LI    + G    A  +  EM E G  P    ++++  GL   G
Sbjct: 459 QMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAG 518

Query: 312 KHDLA 316
             D A
Sbjct: 519 NTDAA 523



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 32/338 (9%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + M    L++     + +I    + G +  A  V+   T+  C   V+  ++++  
Sbjct: 349 YKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 408

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  + + M  +G  P++  Y+ L++  C + KM  A E L +M      P 
Sbjct: 409 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 468

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV---- 177
               ++L+ GL  +G +E+A+   ++M++ G   D+ T+N LI  +CK+G  +       
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528

Query: 178 -----EMYYSVCKLGLC--------------------ADVSTYKILIPAVSKAGMIDEAF 212
                   YS    GLC                    A+  T   LI  + KA  +DEA 
Sbjct: 529 DMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEAV 588

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L + + ++G  P P  Y  II  + + G+ ++    + EM  +   P+R  Y  L+   
Sbjct: 589 SLFNAIRKEG-MPHPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVTYNALLNGM 646

Query: 273 GRGGRFVEAANYLVEMTEMG-LTPISRCFDLVTDGLKN 309
               R   A  Y +EMT  G + P+S    L  D LK+
Sbjct: 647 IGANRMDRAHYYYLEMTGRGYVPPVSILHKLADDRLKD 684



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 6/271 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           V  +N L+   C  +    A+A+IR M    G  P  +T+ ++++  C SGK+  A +  
Sbjct: 154 VETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHF 213

Query: 111 QEMSDKGFNPPVRGR--DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           + +     + PV      +L+ GL+ AG +  A  +  +    G  +D+ T+ +++  + 
Sbjct: 214 EAVRR---SMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLA 270

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+ +++  V +   +   G    ++TY  L+  + K G ++EA  LL  +V++G  P   
Sbjct: 271 KNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 330

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G+ +  +  +A+  F EM  +G   +   YT LI    + G+  +A++    M
Sbjct: 331 TYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTM 390

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           T  G  P       + DGL   G+   A +I
Sbjct: 391 TSHGCVPDVVTLSTMIDGLSKAGRIGAAVRI 421



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 40/315 (12%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++   T + I+    K+  +  AV +  K TA  C   +  YN+LL  LC++     A  
Sbjct: 256 TIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAID 315

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+R+++  G  PD  TY  L++      +  EA +  +EM+ +G          L++GLL
Sbjct: 316 LLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 375

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLET---------------------------------- 159
             G +  A  +   M   G V D+ T                                  
Sbjct: 376 QTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEV 435

Query: 160 -FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +++LI  +CK+ +++  +EM   + K     D  TY ILI  + K+G ++ A      +
Sbjct: 436 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 495

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G KP    Y  +I G+ + G  D A     +M       +R VY+ L+    + G+ 
Sbjct: 496 LEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMS-----SSRFVYSSLVDGLCKSGKL 550

Query: 279 VEAANYLVEMTEMGL 293
                   EM   G+
Sbjct: 551 EGGCMLFHEMERSGV 565



 Score = 87.0 bits (214), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 97/238 (40%)

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R+       T++IL+N    +G M +A    QE +  G    +     +V  L     +
Sbjct: 216 VRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKI 275

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ K+   G    + T+N+L+  +CK G +E  +++   +   G   DV TY  L
Sbjct: 276 QEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 335

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K     EA++L   +   G       Y  +I+G+ + G+   A   +  M   G 
Sbjct: 336 IDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGC 395

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+    + +I    + GR   A      M   GL P    +  +  GL    K D A
Sbjct: 396 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 453


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 155/351 (44%), Gaps = 29/351 (8%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW     +K   +  +  T  ++I+   +   + +AV    +         V+ +N+L+ 
Sbjct: 219 MWDVYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMS 278

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C++     A +    MI+ G +PD  +Y IL++  C +G M EA EF  +M + G  P
Sbjct: 279 GFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEP 338

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L  G    G +  A ++V +M+  G   DL T+  LI   C+ G +E   ++ 
Sbjct: 339 DIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLK 398

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP--------------- 225
             +   GL   + TY +L+ ++ K+G IDEA  LLH +   G KP               
Sbjct: 399 EKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSRGAVEEAIE 458

Query: 226 ----------FPSLY--APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
                     +P+ +  + II G+F +G   +A  +F  +          +Y ++I    
Sbjct: 459 LYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYA 518

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           + G   EA     ++ E G++P    F+ +  G   C K  LAE ++LL+ 
Sbjct: 519 KLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGF--CKKGKLAEAVKLLDT 567



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 140/297 (47%), Gaps = 13/297 (4%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + +  +V +A+ V  K    N Q  +  YNSLL+ L    +    Y  I+     G   +
Sbjct: 178 YSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIK---ASGVPQN 234

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           + T  IL++  C   ++++A  FL+E   + F P V   + L+ G    G ++ AK    
Sbjct: 235 EYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFC 294

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            MIK G + D+ ++N L+  +C +G +E  +E    +   G+  D+ TY IL       G
Sbjct: 295 MMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILG 354

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           +I  A++++  ++ +G  P    Y  +I G  + G  +++F    +M  +G   +   YT
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +L++   + GR  EA   L EM  +GL P     DL+T       +  + E IEL E
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEMEVIGLKP-----DLLT-----YSRGAVEEAIELYE 461



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ + K G +  AV  + +         ++ +NSL++  C+      A  L+  +  
Sbjct: 511 NIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKV 570

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G VP   TY  L+N +C  G M    + L EM  K   P      ++V+GL   G L  
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 630

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           + Q++  M  +G   D  T+N++I++ CK+ +++   +++  + +  L     TY +LI 
Sbjct: 631 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 690

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +   G + +A RLL  L +   +     Y  IIK    +G   +A  FF +M  +G   
Sbjct: 691 GLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEV 750

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +   Y+ +I    +     +A  +   M   G+ P
Sbjct: 751 SIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPP 785



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 10/320 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK ++ M    L+    T +++I    + G ++ + ++  K  +   +  ++ Y  LL +
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L+  M   G  PD  TY        S G + EA E  +EM  K   P 
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTY--------SRGAVEEAIELYEEMCSKRIYPN 471

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ GL   G +  A+   + + K     ++  +N +I+   K G +   V  Y 
Sbjct: 472 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 531

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+   + T+  LI    K G + EA +LL  +   G  P    Y  ++ G    G
Sbjct: 532 QIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEG 591

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
                F    EM+ K   P +  YT+++    + GR  E+   L  M   GL P    ++
Sbjct: 592 DMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYN 651

Query: 302 LVTDGLKNCGKHDLAEKIEL 321
            V      C  HDL +  +L
Sbjct: 652 TVIQSF--CKAHDLQKAFQL 669



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 2/284 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T + +I  F K G +  AV++ +           + Y +L+   CE    H  +
Sbjct: 538 ISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMF 597

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M  K   P + TY ++V   C  G++ E+ + L+ M  +G  P     + ++Q  
Sbjct: 598 DMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSF 657

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  L+ A Q+ N+M++        T+N LI  +C  G ++    +  ++    +    
Sbjct: 658 CKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTK 717

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  +I A    G +  A    H +VE G +     Y+ +I  + +R    DA  FF  
Sbjct: 718 VAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCM 777

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           M   G PP++ +  +++    R G           M + GL P+
Sbjct: 778 MLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLPV 821



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 122/287 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II    + G +  A   F+  T  +  + ++LYN ++    ++     A    +++I 
Sbjct: 476 SAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIE 535

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P   T+  L+  +C  GK+ EA + L  +   G  P       L+ G    G + S
Sbjct: 536 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHS 595

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
              M+++M  +       T+  +++ +CK G +   V++   +   GL  D  TY  +I 
Sbjct: 596 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 655

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           +  KA  + +AF+L + +++   +P P  Y  +I G+   G   DA      ++ +    
Sbjct: 656 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 715

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  YT +I      G    A  +  +M E G     R +  V + L
Sbjct: 716 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRL 762



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/251 (18%), Positives = 113/251 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ +K + L  +  T + ++  + + G + +  ++ ++  A   +   + Y  ++  L
Sbjct: 563 KLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGL 622

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    H +  L++ M  +G  PD+ TY  ++ ++C +  +++A +   +M      P  
Sbjct: 623 CKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSP 682

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ GL   G L+ A +++  +  Q   L    + ++I+  C  G+V+  +  ++ 
Sbjct: 683 VTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQ 742

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G    +  Y  +I  + K  +I +A      ++  G  P   +   ++    R G 
Sbjct: 743 MVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGD 802

Query: 243 FDDAFCFFSEM 253
            +  F  F+ M
Sbjct: 803 PNSVFEIFAMM 813



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/225 (16%), Positives = 101/225 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M+  +  M+   +  +  T +++++   K G +  +V++     A       + YN+++ 
Sbjct: 596 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 655

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           + C+      A+ L  +M++    P   TY +L+N  C  G +++A   L  + D+    
Sbjct: 656 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 715

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  +++     G +++A    ++M+++GF + +  ++++I  +CK   +      +
Sbjct: 716 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAKFFF 775

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             +   G+  D     +++ A  ++G  +  F +   +++ G  P
Sbjct: 776 CMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 820


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 153/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G  D A   +++         V+ YNS++ ALC+ +    A  ++  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +PD  TY  +++ +CSSG+ +EA  FL++M   G  P V    LL+  L   G  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A+++ + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  D   +
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPDHYVF 374

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 375 SILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  P   VY  LI       ++  A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID--SHCKEGRV 492

Query: 316 AEKIELLEVSLR 327
            E  +L E+ +R
Sbjct: 493 IESEKLFELMVR 504



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 139/307 (45%), Gaps = 35/307 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +       S++I  + K G VD A+ VF+K                  
Sbjct: 355 MHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK------------------ 396

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  P+  TY  ++   C SG++ +A  + ++M D+G +P
Sbjct: 397 -----------------MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSP 439

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+ GL      E A++++ +M+ +G  L+   FNS+I++ CK G V    +++
Sbjct: 440 GNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF 499

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + ++G+  +V TY  LI     AG +DEA +LL  +V  G KP    Y+ +I G  + 
Sbjct: 500 ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKI 559

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + +DA   F EM+  G  P+   Y +++    +  R   A    V +TE G       +
Sbjct: 560 SRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTY 619

Query: 301 DLVTDGL 307
           +++  GL
Sbjct: 620 NIILHGL 626



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 147/329 (44%), Gaps = 39/329 (11%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK---GFVPDKRTYAILVN 95
           V  + T   C   V  YN LL  LC+      A  L+  M      G  PD  +Y  ++N
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G   +A     EM D+G  P V   + ++  L  A  ++ A +++N M+K G + 
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 156 DLETFNSLIETICKSGE--------------------VEFCVEMYY-------------- 181
           D  T+NS++   C SG+                    V + + M Y              
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324

Query: 182 -SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P   +++ +I    ++
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQ 384

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A   FS+M+ +G  PN   Y  +I +  + GR  +A  Y  +M + GL+P +  +
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           + +  GL  C K + AE++ +LE+  R +
Sbjct: 445 NSLIHGLCTCNKWERAEEL-ILEMLDRGI 472



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 137/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K   +D A+EV N           + YNS+L   C       A   +++M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY++L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   D   F+ LI    K G+V+  + ++  + + GL  +  TY  +
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A      ++++G  P   +Y  +I G+    +++ A     EM  +G 
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   +  +I    + GR +E+      M  +G+ P    ++ + +G    GK D A K
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK 532

Query: 319 I 319
           +
Sbjct: 533 L 533



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 127/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T SL+++   K+G    A ++F+  T    +  +  Y +LL            + L+  M
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD   ++IL+ A+   GK+ +A     +M  +G NP       ++  L  +G +
Sbjct: 363 VRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A     +MI +G       +NSLI  +C   + E   E+   +   G+C +   +  +
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +  K G + E+ +L   +V  G KP    Y  +I G    G+ D+A    S M   G 
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y+ LI    +  R  +A     EM   G++P    ++++  GL
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F        +  V+ YN+L+   C       A  L+  M+  G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  ++ + G  ++L T+N ++  +CK+   +  ++M+ ++C + L  +  T+ I+I A+
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L      +G  P    Y  + + +  +G  ++    F  M+  G   + 
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 722 GMLNFIVRELLQRGEITRAGTYLSMIDE 749



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 120/269 (44%), Gaps = 4/269 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM   G +P+  +Y IL+   C   + +EA E L
Sbjct: 122 AIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELL 181

Query: 111 QEMSDK--GFNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             M+D   G +PP V     ++ G    G  + A    ++M+ +G + D+ T+NS+I  +
Sbjct: 182 HMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAAL 241

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK+  ++  +E+  ++ K G+  D  TY  ++     +G   EA   L  +  DG +P  
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           M   G+ P    F ++       GK D A
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQA 390



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 144/319 (45%), Gaps = 3/319 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+ +  T   +I    K G V++A+  F +          ++YNSL+  LC    
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   +   +  ++++ C  G++ E+++  + M   G  P V   + 
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A ++++ M+  G   +  T+++LI   CK   +E  + ++  +   G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    DDA 
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +  V  +  GL P    + L+ + +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 308 KNCGKHDLAEKIELLEVSL 326
              G   L E+++ L +S+
Sbjct: 697 IGQG---LLEELDQLFLSM 712



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + +NS++ + C+      +  L   M+R G  P+  TY  L+N +C +GKM EA + L 
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P       L+ G      +E A  +  +M   G   D+ T+N +++ + ++ 
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 E+Y  + + G   ++STY I++  + K  + D+A ++  NL     K     + 
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + + G+ D+A   F      G  PN   Y ++       G   E     + M + 
Sbjct: 656 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715

Query: 292 GLTPISRCFDLV 303
           G T  S   + +
Sbjct: 716 GCTVDSGMLNFI 727



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 46/312 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMR----------- 104
           AL +V     A A+ R  RM R G     PD  TY IL+   C +G++            
Sbjct: 56  ALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK 115

Query: 105 -----EAQEF--------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                +A  F                    L+ M++ G  P V   ++L++GL +    +
Sbjct: 116 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQ 175

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A ++++ M      G   D+ ++ ++I    K G+ +     Y+ +   G+  DV TY 
Sbjct: 176 EALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYN 235

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I A+ KA  +D+A  +L+ +V++G  P    Y  I+ G    GQ  +A  F  +M+  
Sbjct: 236 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   Y++L+    + GR +EA      MT+ GL P    +  +  G    G   L 
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA--LV 353

Query: 317 EKIELLEVSLRS 328
           E   LL++ +R+
Sbjct: 354 EMHGLLDLMVRN 365



 Score = 43.1 bits (100), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  D+ TY
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTY 90

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI    +AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE---MGLTPISRCFDLVTDGLKNCG 311
             G  PN   Y +L+       R  EA   L  M +    G  P    +  V +G    G
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 312 KHDLA 316
             D A
Sbjct: 211 DSDKA 215


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A E++       CQ     Y+ L+  LC++     A  L+R M +KGF P+  TY
Sbjct: 325 GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTY 384

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++++C +G   + +  L+EMS KG     +G + ++  L   G ++ A  ++ +M  
Sbjct: 385 TIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRS 444

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           QG   D+ ++N++I  +C + ++E    M+ ++ + G+ A+  TY  +I A+ + G   +
Sbjct: 445 QGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQD 504

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RL   ++  G       Y  +IK M + G  D +     EM  KG  PN   Y +LI+
Sbjct: 505 AVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILIS 564

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              +  R  +A     +M   GL P    ++ + +GL   G
Sbjct: 565 ELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG 605



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 4/265 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  D A+ +        C    +LY +++ ALC+      A  L+  M+  G   D  T+
Sbjct: 189 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 248

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             +V   C  G++REA   +  M  KG  P V     L+QGL      + A+ M+ ++ +
Sbjct: 249 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE 308

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              VL    FN++I      G++    E+Y ++   G   D  TY IL+  + K G I  
Sbjct: 309 LNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS 364

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RLL  + + G  P    Y  ++    + G +DD      EM  KG   N   Y  +I 
Sbjct: 365 AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 424

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
              + GR  EA   + EM   G  P
Sbjct: 425 ALCKDGRMDEAMGLIQEMRSQGCNP 449



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S+++    K G + +AV +  +         V+ Y  +L + C+  ++    AL+  
Sbjct: 347 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG   + + Y  ++ A C  G+M EA   +QEM  +G NP +   + ++  L N   
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A+ M   ++++G V +  T+N++I  + + G  +  V +   +   G   DV +Y  
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 526

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+ K G +D +  LL  + E G KP    Y  +I  + +  +  DA     +M  +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+   Y  LI    + G    A N L ++    + P
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHP 624



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 33/322 (10%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR------------- 77
           G V  A  + ++     C   V+ Y  LL  LC V+    A A++ R             
Sbjct: 259 GRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVI 318

Query: 78  ------------------MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                             M  KG  PD  TY+IL++  C  G++  A   L+EM  KGF 
Sbjct: 319 GGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFA 378

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +++      G  +  + ++ +M  +G  L+ + +N +I  +CK G ++  + +
Sbjct: 379 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 438

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D+ +Y  +I  +     ++EA  +  NL+E+G       Y  II  + R
Sbjct: 439 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLR 498

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G++ DA     EM + G   +   Y  LI    + G    +   L EM E G+ P +  
Sbjct: 499 DGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVS 558

Query: 300 FDLVTDGLKNCGKHDLAEKIEL 321
           ++++   L  C +  + + +EL
Sbjct: 559 YNILISEL--CKERRVRDALEL 578



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 120/252 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F K+G+ D+   +  + +A         YN +++ALC+      A  LI+ M
Sbjct: 383 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 442

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  +Y  ++   C++ +M EA+   + + ++G        + ++  LL  G  
Sbjct: 443 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 502

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +MI  G  LD+ ++N LI+ +CK G V+  + +   + + G+  +  +Y IL
Sbjct: 503 QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNIL 562

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   + +A  L   ++  G  P    Y  +I G+ + G    A     ++  +  
Sbjct: 563 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 259 PPNRPVYTMLIT 270
            P+   Y +LI+
Sbjct: 623 HPDIITYNILIS 634



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 31/301 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G V  A  + N+     C   V  ++ ++  +C +     A  L+ RM+ KG
Sbjct: 216 VIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKG 275

Query: 83  FVPDKRTYAILVNAWC-------------------------------SSGKMREAQEFLQ 111
            +P   TY  L+   C                               + GK+ EA E  +
Sbjct: 276 CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYE 335

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG  P      +L+ GL   G + SA +++ +M K+GF  ++ T+  ++ + CK+G
Sbjct: 336 TMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNG 395

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +    +   +   GL  +   Y  +I A+ K G +DEA  L+  +   G  P    Y 
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  +    Q ++A   F  +  +G   N   Y  +I    R GR+ +A     EM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 292 G 292
           G
Sbjct: 516 G 516



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 5/251 (1%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMR 104
           F  Q     YN +L  L        A AL RRM+ +  VP    T+ +   A C  G+  
Sbjct: 133 FGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRAD 192

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA   L+ M+  G  P       ++  L + G +  A  ++N+M+  G   D+ TF+ ++
Sbjct: 193 EALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVV 252

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +C  G V     +   +   G    V TY  L+  + +    DEA  +L  + E    
Sbjct: 253 RGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN-- 310

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
               L+  +I G    G+  +A   +  M +KG  P+   Y++L+    + GR   A   
Sbjct: 311 --VVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRL 368

Query: 285 LVEMTEMGLTP 295
           L EM + G  P
Sbjct: 369 LREMEKKGFAP 379



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 4/250 (1%)

Query: 1   MWKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW      +E M    L+++ Q  + +I    K G +D A+ +  +  +  C   +  YN
Sbjct: 396 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 455

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++++ LC  +    A  +   ++ +G V +  TY  +++A    G+ ++A    +EM   
Sbjct: 456 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 515

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +  V   + L++ +   G ++ +  ++ +M ++G   +  ++N LI  +CK   V   
Sbjct: 516 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 575

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +   GL  D+ TY  LI  + K G +  A  LL  L  +   P    Y  +I  
Sbjct: 576 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 635

Query: 237 MFRRGQFDDA 246
             +    DDA
Sbjct: 636 HCKVRLLDDA 645



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+++ AL     +  A  L + MI  G   D  +Y  L+ A C  G +  +   L+E
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M++KG  P     ++L+  L     +  A ++  +M+ QG   D+ T+N+LI  +CK G 
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +   + +   +    +  D+ TY ILI    K  ++D+A  LL+
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 650



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G VD ++ +  +      +   + YN L+  LC+ +    A  L ++M+ +G
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N  C  G M  A   L+++ ++  +P +   ++L+        L+ A 
Sbjct: 587 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 646

Query: 143 QMVNKMI 149
            ++N+ +
Sbjct: 647 MLLNRAM 653



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQF 243
           + G+     +Y +++  +++A    +A  L   +V  D   P    +    + + R G+ 
Sbjct: 132 RFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRA 191

Query: 244 DDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           D+A      M   G  P+  +Y T++  +C +GG   EAA  L EM  MG       FD 
Sbjct: 192 DEALALLRGMARHGCVPDAVLYQTVIHALCDQGG-VTEAATLLNEMLLMGCAADVNTFDD 250

Query: 303 VTDGLKNCGKHDLAEKIELLE 323
           V  G+  CG   + E   L++
Sbjct: 251 VVRGM--CGLGRVREAARLVD 269



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N+S +     ++I E  K   V +A+E+  +         ++ YN+L+  LC++  
Sbjct: 552 IKPNNVSYN-----ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 606

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
            H A  L+ ++  +   PD  TY IL++  C    + +A   L  
Sbjct: 607 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 651


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 128 FNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K+ +A E   EM  KG  P       L+ G    G ++
Sbjct: 188 ASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVD 247

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 248 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 307

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +    +Y  +I G+ R G   DA     EM   G  
Sbjct: 308 DGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLK 367

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 368 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 96  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWG 155

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M+  G   D+ T++ LI  +CK  +++   
Sbjct: 156 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDAN 215

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 216 ELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +       
Sbjct: 276 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDD 335

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G    AEK+  E+L V L+
Sbjct: 336 VVYTALISGLCREGXSVDAEKMLREMLSVGLK 367



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 3/246 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 53  SDLYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVT 232

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-E 323
           +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L+ E
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLIDE 290

Query: 324 VSLRSV 329
           +S++ +
Sbjct: 291 MSMKGL 296


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  121 bits (304), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 2/300 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L ++P   + +I      G V +AV V              ++ +++   
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A      M ++G   D  TY  L+N  C +G+++EA+  LQEM DKG +   
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +  A  + NKM+++    ++ T+ +L + +CK G+V    E+ + 
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C  GL  ++ TY  LI  + KAG +++A R + ++ E G KP    Y  II  + +  +
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKE 545

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFD 301
            D A     EM  KG  P    Y +L+      GR VE    L+E M E  + P +  ++
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR-VEGGKRLLEWMLEKNIHPNTTTYN 604



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 145/322 (45%), Gaps = 13/322 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ Y +S SP++ + ++        +D AV++F +    N       YN LL ALC    
Sbjct: 217 LRQYGISPSPESCNAVLCRLP----LDEAVQLFQELPEKN----TCSYNILLKALCTAGR 268

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M      PD  TY I+V+ +C+  ++  A + L EM+ +G          
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L + G +  A ++V  M+  G VLD   F +++   C+ G++      +  + K G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L AD  TY  LI  + +AG + EA R+L  + + G       Y  +I G  + G+  +AF
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              ++M  K   PN   YT L     + G    A   L EM   GL      ++ + +GL
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 308 KNCGKHDLAEK--IELLEVSLR 327
              G  + A +  I++ E  L+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLK 527



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 2/242 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + + +   K G V  A E+ ++  +   +  +  YNSL+  LC+      A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +  M   G  PD  TY  ++ A C S ++  A   LQEM DKG  P +   ++L+ G 
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +E  K+++  M+++    +  T+NSL++  C    ++   E+Y  +    +  + 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +TY ILI    KA  + EA      ++E G +   S Y  +I+ + ++ +F +A   F +
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 253 MK 254
           M+
Sbjct: 696 MR 697



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  + + +     + ++  F + G +  A   F++          + Y +L+  L
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGL 400

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  +++ M  KG   D  TY +L++ +C  GKM EA     +M  K   P V
Sbjct: 401 CRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L  GL   G + +A +++++M  +G  L++ T+NSLI  +CK+G +E  +     
Sbjct: 461 VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMID 520

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  DV TY  +I A+ ++  +D A  LL  +++ G KP    Y  ++ G    G+
Sbjct: 521 MDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 580

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +        M  K   PN   Y  L+
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 126/303 (41%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   L V   T +++I+ + K G +  A  V NK         V+ Y +L   L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L+  M  KG   +  TY  L+N  C +G + +A   + +M + G  P V
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++  L  +  L+ A  ++ +M+ +G    + T+N L+   C SG VE    +   
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  + +TY  L+        +     +   ++     P  + Y  +IKG  +   
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A  F SEM  KG       Y  LI +  +  +F EA     +M +  LT     ++ 
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNF 710

Query: 303 VTD 305
             D
Sbjct: 711 YID 713



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T + +I    + G +  A  V  +          + Y  L+   C+V  
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +  +M++K   P+  TY  L +  C  G +  A E L EM  KG    +   + 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG LE A + +  M + G   D+ T+ ++I  +C+S E++    +   +   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY +L+     +G ++   RLL  ++E    P  + Y  ++K            
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             +  M  +   PN   Y +LI    +     EA  +  EM E G
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 105/235 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ A+           +  V  Y +++ ALC+ K    A++L++ M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY +L+N +C SG++   +  L+ M +K  +P     + L++       +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +S  ++   M+ Q  V +  T+N LI+  CK+  ++  +  +  + + G     S+Y  L
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           I  ++K     EA RL   + +D     P +Y   I   F     +       E+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 6/283 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG-AYALIRRMIRK 81
           +I   GK G + +A+++F +  +  C   V+ YN+++ AL E K     A+    +M   
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G VP   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAA 460

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+ + K G +   V+++  + KLG   DV  Y  L+  
Sbjct: 461 NELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + + GM DEA  LL  + E+G  P  + +  I+ G  R G    A   F+ MK     P+
Sbjct: 521 MVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPD 580

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              Y  ++    R G F EAA  + EM   G       +DL+T
Sbjct: 581 VVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE-----YDLIT 618



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 2/321 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWKTI+ M      + P  LS I++  GK  +V+ A+ +F +     C+     YNS++ 
Sbjct: 143 MWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMIL 202

Query: 61  ALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L +       + L   M  +G  +PD  TY+ L+ A+   G+   A     EM + G +
Sbjct: 203 MLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLH 262

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +    ++      G +E A  +V +M ++G  L + T+  LI+ + K+G+VE    +
Sbjct: 263 PTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSI 322

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           + ++ K G   DV     LI  + KAG + +A +L   +      P    Y  +IK +F 
Sbjct: 323 FMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFE 382

Query: 240 -RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            + +  +AF ++ +MK  G  P+   Y++LI    +  R  +A   L EM E G  P   
Sbjct: 383 SKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA 442

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            +  + + L    +++ A ++
Sbjct: 443 AYCSLINALGKAKRYEAANEL 463



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 1/305 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  + +  + I+  + K G V+ A+ +  +     C   V  Y  L+  + +   
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGK 315

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY++   M+++G  PD      L+N    +G++ +A +  +EM      P V   + 
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNT 375

Query: 128 LVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +    S A     KM + G V    T++ LI+  CK+  VE  + +   + + 
Sbjct: 376 VIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI A+ KA   + A  L   L E+       +YA +IK + + G+  +A
Sbjct: 436 GFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F+EMK  G  P+   Y  L++   R G   EA + L  M E G TP     +++ +G
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 307 LKNCG 311
               G
Sbjct: 556 FARTG 560



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +  S  T S++I+ F K   V+ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++      G++ EA +   EM   G NP V   
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G++  G  + A  ++  M + G   DL + N ++    ++G  +  +EM+  +  
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN 574

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV +Y  ++  +S+AGM +EA +L+  +   G +     Y+ I++ +   G+ D+
Sbjct: 575 SKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV---GKIDE 631



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 3/317 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK    +++  T + +I+  GK G V+ A  +F       C+  V+L N+L+  L +
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL--QEMSDKGFNPPV 122
                 A  L   M      P+  TY  ++ A   S K R ++ FL  ++M + G  P  
Sbjct: 348 AGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFES-KARASEAFLWYEKMKENGVVPSS 406

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G      +E A  ++ +M ++GF      + SLI  + K+   E   E++  
Sbjct: 407 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQE 466

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +    +    Y ++I  + K G + EA  L + + + G  P    Y  ++ GM R G 
Sbjct: 467 LRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGM 526

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A      M+  G  P+   + +++    R G    A      M    + P    ++ 
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNT 586

Query: 303 VTDGLKNCGKHDLAEKI 319
           V   L   G  + A K+
Sbjct: 587 VLGCLSRAGMFEEAAKL 603



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 106/245 (43%), Gaps = 3/245 (1%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+ F  D  TY  L++    +G + E  + +QEM              +V+ L  A  + 
Sbjct: 117 RRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVN 176

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKIL 198
            A  +  ++  +       T+NS+I  + + G  E   E+Y  +C  G C  D  TY  L
Sbjct: 177 KALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSAL 236

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G  D A  L   + E+G  P   +Y  I+   F+ G+ + A     EMK KG 
Sbjct: 237 IAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGC 296

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
                 YT LI   G+ G+  EA +  + M + G  P     + + + L   G+  LA+ 
Sbjct: 297 ALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGR--LADA 354

Query: 319 IELLE 323
           I+L E
Sbjct: 355 IKLFE 359


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 145/305 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M+    +    T ++++    + G VD+A+E      ++ C+   + YN +L  L
Sbjct: 13  KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 72

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +  A  L+  M +KG  P+  T+ +L++  C  G +  A E L+++   G  P  
Sbjct: 73  CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNS 132

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+        ++ A   ++ M+ +G   D+ ++N+L+  +C+SGEV+  VE+ + 
Sbjct: 133 LSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQ 192

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G    + +Y  +I  ++KAG   EA  LL+ +V  G +P    Y+ I  G+ R  +
Sbjct: 193 LKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDR 252

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +DA   F +++  G  PN  +Y  +I    +      A +    M   G  P    + +
Sbjct: 253 IEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTI 312

Query: 303 VTDGL 307
           + +GL
Sbjct: 313 LIEGL 317



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 118/239 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    + GLV+ A+EV  +   + C    L YN LL A C+ K    A A +  M
Sbjct: 99  TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 158

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  +Y  L+ A C SG++  A E L ++ DKG  P +   + ++ GL  AG  
Sbjct: 159 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 218

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++N+M+ +G   D+ T++++   +C+   +E  +  +  V  +G+  +   Y  +
Sbjct: 219 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 278

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           I  + K      A  L   ++ +G  P  S Y  +I+G+   G   +A     E+  +G
Sbjct: 279 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 118/247 (47%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C+   +  A  L+  M  KG  PD  TY ++VN  C  G++ +A EFL+ +   G  P
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                +++++GL  A   E A++++ +M ++G   ++ TFN LI  +C+ G VE  +E+ 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   +  +Y  L+ A  K   +D+A   L  +V  G  P    Y  ++  + R 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A     ++K KG  P    Y  +I    + G+  EA   L EM   GL P    +
Sbjct: 181 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 240

Query: 301 DLVTDGL 307
             +  GL
Sbjct: 241 STIAAGL 247



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 2/227 (0%)

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C     ++A + L EM DKG  P +   +++V G+   G ++ A + +  +   G   
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  ++N +++ +C +   E   E+   + + G   +V T+ +LI  + + G+++ A  +L
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             + + G  P    Y P++    ++ + D A  F   M  +G  P+   Y  L+T   R 
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G    A   L ++ + G  P+   ++ V DGL   GK    E +ELL
Sbjct: 181 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT--KEALELL 225



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P +LS +P     ++  F K   +D A+   +   +  C   ++ YN+LL ALC      
Sbjct: 130 PNSLSYNP-----LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVD 184

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L+ ++  KG  P   +Y  +++    +GK +EA E L EM  KG  P +     + 
Sbjct: 185 VAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIA 244

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL     +E A +   K+   G   +   +N++I  +CK  E    ++++  +   G  
Sbjct: 245 AGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCM 304

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            + STY ILI  ++  G+I EA  LL  L   G
Sbjct: 305 PNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 137/300 (45%), Gaps = 2/300 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L ++P   + +I      G V +AV V              ++ +++   
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A      M ++G   D  TY  L+N  C +G+++EA+  LQEM DKG +   
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G    G +  A  + NKM+++    ++ T+ +L + +CK G+V    E+ + 
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C  GL  ++ TY  LI  + KAG +++A R + ++ E G KP    Y  II  + +  +
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKE 545

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFD 301
            D A     EM  KG  P    Y +L+      GR VE    L+E M E  + P +  ++
Sbjct: 546 LDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR-VEGGKRLLEWMLEKNIHPNTTTYN 604



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 145/322 (45%), Gaps = 13/322 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ Y +S SP++ + ++        +D AV++F +    N       YN LL ALC    
Sbjct: 217 LRQYGISPSPESCNAVLCRLP----LDEAVQLFQELPEKN----TCSYNILLKALCTAGR 268

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M      PD  TY I+V+ +C+  ++  A + L EM+ +G          
Sbjct: 269 IKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTS 325

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L + G +  A ++V  M+  G VLD   F +++   C+ G++      +  + K G
Sbjct: 326 VIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRG 385

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L AD  TY  LI  + +AG + EA R+L  + + G       Y  +I G  + G+  +AF
Sbjct: 386 LAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAF 445

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              ++M  K   PN   YT L     + G    A   L EM   GL      ++ + +GL
Sbjct: 446 LVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL 505

Query: 308 KNCGKHDLAEK--IELLEVSLR 327
              G  + A +  I++ E  L+
Sbjct: 506 CKAGNLEQAMRTMIDMDEAGLK 527



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 2/259 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + + +   K G V  A E+ ++  +   +  +  YNSL+  LC+      A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +  M   G  PD  TY  ++ A C S ++  A   LQEM DKG  P +   ++L+ G 
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +E  K+++  M+++    +  T+NSL++  C    ++   E+Y  +    +  + 
Sbjct: 576 CMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +TY ILI    KA  + EA      ++E G +   S Y  +I+ + ++ +F +A   F +
Sbjct: 636 NTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEK 695

Query: 253 MKIKGHPPNRPVYTMLITM 271
           M+ +       VY   I +
Sbjct: 696 MRKERLTAEPDVYNFYIDL 714



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 122/267 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M  + + +     + ++  F + G +  A   F++          + Y +L+  L
Sbjct: 341 RVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGL 400

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  +++ M  KG   D  TY +L++ +C  GKM EA     +M  K   P V
Sbjct: 401 CRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNV 460

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L  GL   G + +A +++++M  +G  L++ T+NSLI  +CK+G +E  +     
Sbjct: 461 VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMID 520

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  DV TY  +I A+ ++  +D A  LL  +++ G KP    Y  ++ G    G+
Sbjct: 521 MDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGR 580

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +        M  K   PN   Y  L+
Sbjct: 581 VEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 126/303 (41%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   L V   T +++I+ + K G +  A  V NK         V+ Y +L   L
Sbjct: 411 RVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGL 470

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L+  M  KG   +  TY  L+N  C +G + +A   + +M + G  P V
Sbjct: 471 CKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDV 530

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++  L  +  L+ A  ++ +M+ +G    + T+N L+   C SG VE    +   
Sbjct: 531 YTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  + +TY  L+        +     +   ++     P  + Y  +IKG  +   
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A  F SEM  KG       Y  LI +  +  +F EA     +M +  LT     ++ 
Sbjct: 651 MKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNF 710

Query: 303 VTD 305
             D
Sbjct: 711 YID 713



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T + +I    + G +  A  V  +          + Y  L+   C+V  
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +  +M++K   P+  TY  L +  C  G +  A E L EM  KG    +   + 
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG LE A + +  M + G   D+ T+ ++I  +C+S E++    +   +   G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   + TY +L+     +G ++   RLL  ++E    P  + Y  ++K            
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTT 620

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             +  M  +   PN   Y +LI    +     EA  +  EM E G
Sbjct: 621 EIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKG 665



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G ++ A+           +  V  Y +++ ALC+ K    A++L++ M
Sbjct: 497 TYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEM 556

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY +L+N +C SG++   +  L+ M +K  +P     + L++       +
Sbjct: 557 LDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNM 616

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +S  ++   M+ Q  V +  T+N LI+  CK+  ++  +  +  + + G     S+Y  L
Sbjct: 617 KSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNAL 676

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           I  ++K     EA RL   + ++     P +Y   I   F     +       E+
Sbjct: 677 IRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDEL 731


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 134/274 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K G V  A  + ++      +      N++L+ LC++K +  A  L+   
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++GFVPD+ +Y  ++ A+        A     +M ++   P +   + L++GL     L
Sbjct: 481 PQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL 540

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +N+++++G V D  T+N +I   CK G++E     +  + +     DV T   L
Sbjct: 541 KEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTL 600

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A +L  + VE G K     Y  +I+ M + G  D A  FF +M++KG 
Sbjct: 601 MNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL 660

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P+   Y ++++     GR  EA N L ++ + G
Sbjct: 661 QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 130/259 (50%), Gaps = 11/259 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  LC ++    A   +  ++ KG VPD+ TY I+++A+C  G +  A  F  +M 
Sbjct: 527 YNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +  F P V   + L+ GL   G L+ A ++    +++G  +D+ T+N+LI+++CK G+V+
Sbjct: 587 ENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVD 646

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +  +  +   GL  D  TY +++ A+S+AG  +EA  +LH L + G K   S   P++
Sbjct: 647 TALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG-KLSQSFACPLL 705

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR------GGRFVEAANYLVEM 288
           K        D+A     E K +     +     L T   R      GG+  EA   L EM
Sbjct: 706 KP----SSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEAKAVLDEM 761

Query: 289 TEMGLTPISRCFDLVTDGL 307
            + G+   S  +  + +GL
Sbjct: 762 MQKGMPVDSSTYITLMEGL 780



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 142/313 (45%), Gaps = 11/313 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T + ++  F + G +  A +V    TA+  +  +  YN L   LC+   
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK 328

Query: 68  FHGAYALIRRMIR-KGFVPDKRTYAILVNA---W-CSSGKMREAQEFLQEMSDKGFNPPV 122
              A+ L   M R    +PD  TY  LV+A   W CSS  +R     L+EM DKG  P +
Sbjct: 329 VDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALR----LLEEMRDKGVKPTL 384

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++V+ L   G LE A   + K+ ++G   D+ T+N+LI+  CK+G V     +   
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D  T   ++  + K    ++A  LLH+  + G  P    Y  ++   F+   
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   + +M  +   P+   Y  LI    R  R  EA + L E+ E GL P    +++
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNI 564

Query: 303 VTDGLKNCGKHDL 315
           +      C + DL
Sbjct: 565 IIHAY--CKEGDL 575



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ-QCVLLYNSLLFA 61
           K +E M  Y      +T +++     + G VD A  + ++    +     V+ YN+L+ A
Sbjct: 299 KVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDA 358

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             + +    A  L+  M  KG  P   T+ I+V + C  GK+ EA   L++++++G  P 
Sbjct: 359 CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+     AG +  A  ++++M+ +G  +D  T N+++  +CK    E   E+ +
Sbjct: 419 VITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLH 478

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S  + G   D  +Y  ++ A  K    + A RL   ++E    P  S Y  +IKG+ R  
Sbjct: 479 SPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRME 538

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A    +E+  KG  P+   Y ++I    + G    A  +  +M E    P     +
Sbjct: 539 RLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCN 598

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + +GL   GK D A K+
Sbjct: 599 TLMNGLCLHGKLDKALKL 616



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 118/282 (41%), Gaps = 13/282 (4%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS SP TL               +++VF              +N L+   C       A 
Sbjct: 181 LSRSPSTLP------------QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADAL 228

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A +  M   G  PD  TY  L+NA C  G + EA+  L  M   G  P     + LV   
Sbjct: 229 ATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAF 288

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-AD 191
              G+++ A ++V  M   GF  DL T+N L   +C++G+V+    +   + +L     D
Sbjct: 289 ARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPD 348

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  L+ A  K     +A RLL  + + G KP    +  ++K + + G+ ++A     
Sbjct: 349 VVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLE 408

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           ++  +G  P+   Y  LI    + G   +A   + EM   GL
Sbjct: 409 KIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 141/320 (44%), Gaps = 35/320 (10%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A+ +  +      +  ++ +N ++ +LC+      A   + ++  +G  PD  TY  L+
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426

Query: 95  NAWCSSGKMREAQEFLQEMSDKGF----------------------------NPPVRG-- 124
           +A+C +G + +A   + EM  KG                             +PP RG  
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV 486

Query: 125 RDLLVQGLLNAGYL-----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
            D +  G + A Y      E A ++ ++MI++  +  + T+N+LI+ +C+   ++  ++ 
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              + + GL  D +TY I+I A  K G ++ AFR  + +VE+  KP       ++ G+  
Sbjct: 547 LNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ D A   F     KG   +   Y  LI    + G    A ++  +M   GL P +  
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           +++V   L   G+ + A  +
Sbjct: 667 YNVVLSALSEAGRSEEAHNM 686



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 56  NSLLFALCEV--KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           N++L AL      L   +  + R +I     P+  T+ +LV+  CS G + +A   L  M
Sbjct: 175 NAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM 234

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G +P     + L+      G L  A+ ++ +M + G      T+N+L+    + G +
Sbjct: 235 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWI 294

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YA 231
           +   ++  S+   G   D+ TY +L   + +AG +DEAFR L + +E      P +  Y 
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFR-LKDEMERLSTALPDVVTYN 353

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++   F+     DA     EM+ KG  P    + +++    + G+  EA   L ++ E 
Sbjct: 354 TLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEE 413

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           GL P    ++ + D    C   ++A+   L++
Sbjct: 414 GLAPDVITYNTLIDAY--CKAGNVAKAFTLMD 443



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 2/230 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++ A C+      A+    +M+   F PD  T   L+N  C  GK+ +A +  +   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KG    V   + L+Q +   G +++A    + M  +G   D  T+N ++  + ++G  E
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIP-AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               M + +   G  +      +L P +  +A + +   +      E         Y   
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMER 741

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAA 282
           + G+   GQ  +A     EM  KG P +   Y T++  +  R  R   AA
Sbjct: 742 LNGLCTGGQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQKRQTHAA 791



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 141 AKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEV--EFCVEMYYSVCKLGLCADVSTYKI 197
           A Q+++ + ++ G    L+  N+++  + +S     +  ++++ S+ +L L  +  T+ +
Sbjct: 154 AAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNL 213

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+      G + +A   L  +   G  P    Y  ++    R+G   +A    + MK  G
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD--- 314
             P +P Y  L++   R G   +A   +  MT  G  P  R ++++  GL   GK D   
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAF 333

Query: 315 -LAEKIELLEVSLRSV 329
            L +++E L  +L  V
Sbjct: 334 RLKDEMERLSTALPDV 349


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 137/281 (48%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A E++       CQ     Y+ L+  LC++     A  L+R M +KGF P+  TY
Sbjct: 309 GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTY 368

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++++C +G   + +  L+EMS KG     +G + ++  L   G ++ A  ++ +M  
Sbjct: 369 TIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRS 428

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           QG   D+ ++N++I  +C + ++E    M+ ++ + G+ A+  TY  +I A+ + G   +
Sbjct: 429 QGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQD 488

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RL   ++  G       Y  +IK M + G  D +     EM  KG  PN   Y +LI+
Sbjct: 489 AVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILIS 548

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              +  R  +A     +M   GL P    ++ + +GL   G
Sbjct: 549 ELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG 589



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 113/265 (42%), Gaps = 4/265 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  D A+ +        C    +LY +++ ALC+      A  L+  M+  G   D  T+
Sbjct: 173 GRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTF 232

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             +V   C  G++REA   +  M  KG  P V     L+QGL      + A+ M+ ++ +
Sbjct: 233 DDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPE 292

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
              VL    FN++I      G++    E+Y ++   G   D  TY IL+  + K G I  
Sbjct: 293 LNVVL----FNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGS 348

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A RLL  + + G  P    Y  ++    + G +DD      EM  KG   N   Y  +I 
Sbjct: 349 AVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIY 408

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP 295
              + GR  EA   + EM   G  P
Sbjct: 409 ALCKDGRMDEAMGLIQEMRSQGCNP 433



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S+++    K G + +AV +  +         V+ Y  +L + C+  ++    AL+  
Sbjct: 331 HTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEE 390

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG   + + Y  ++ A C  G+M EA   +QEM  +G NP +   + ++  L N   
Sbjct: 391 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 450

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A+ M   ++++G V +  T+N++I  + + G  +  V +   +   G   DV +Y  
Sbjct: 451 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNG 510

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+ K G +D +  LL  + E G KP    Y  +I  + +  +  DA     +M  +G
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 570

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+   Y  LI    + G    A N L ++    + P
Sbjct: 571 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHP 608



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 135/322 (41%), Gaps = 33/322 (10%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR------------- 77
           G V  A  + ++     C   V+ Y  LL  LC V+    A A++ R             
Sbjct: 243 GRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVI 302

Query: 78  ------------------MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                             M  KG  PD  TY+IL++  C  G++  A   L+EM  KGF 
Sbjct: 303 GGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFA 362

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +++      G  +  + ++ +M  +G  L+ + +N +I  +CK G ++  + +
Sbjct: 363 PNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGL 422

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D+ +Y  +I  +     ++EA  +  NL+E+G       Y  II  + R
Sbjct: 423 IQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLR 482

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G++ DA     EM + G   +   Y  LI    + G    +   L EM E G+ P +  
Sbjct: 483 DGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVS 542

Query: 300 FDLVTDGLKNCGKHDLAEKIEL 321
           ++++   L  C +  + + +EL
Sbjct: 543 YNILISEL--CKERRVRDALEL 562



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 120/252 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F K+G+ D+   +  + +A         YN +++ALC+      A  LI+ M
Sbjct: 367 TYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEM 426

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  +Y  ++   C++ +M EA+   + + ++G        + ++  LL  G  
Sbjct: 427 RSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRW 486

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +MI  G  LD+ ++N LI+ +CK G V+  + +   + + G+  +  +Y IL
Sbjct: 487 QDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNIL 546

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   + +A  L   ++  G  P    Y  +I G+ + G    A     ++  +  
Sbjct: 547 ISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 606

Query: 259 PPNRPVYTMLIT 270
            P+   Y +LI+
Sbjct: 607 HPDIITYNILIS 618



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 31/301 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G V  A  + N+     C   V  ++ ++  +C +     A  L+ RM+ KG
Sbjct: 200 VIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKG 259

Query: 83  FVPDKRTYAILVNAWC-------------------------------SSGKMREAQEFLQ 111
            +P   TY  L+   C                               + GK+ EA E  +
Sbjct: 260 CMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYE 319

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG  P      +L+ GL   G + SA +++ +M K+GF  ++ T+  ++ + CK+G
Sbjct: 320 TMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNG 379

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +    +   +   GL  +   Y  +I A+ K G +DEA  L+  +   G  P    Y 
Sbjct: 380 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 439

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  +    Q ++A   F  +  +G   N   Y  +I    R GR+ +A     EM   
Sbjct: 440 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 499

Query: 292 G 292
           G
Sbjct: 500 G 500



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 5/225 (2%)

Query: 72  YALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           +AL RRM+ +  VP    T+ +   A C  G+  EA   L+ M+  G  P       ++ 
Sbjct: 143 FALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIH 202

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L + G +  A  ++N+M+  G   D+ TF+ ++  +C  G V     +   +   G   
Sbjct: 203 ALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMP 262

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V TY  L+  + +    DEA  +L  + E        L+  +I G    G+  +A   +
Sbjct: 263 GVMTYGFLLQGLCRVRQADEARAMLGRVPELN----VVLFNTVIGGCLAEGKLAEATELY 318

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             M +KG  P+   Y++L+    + GR   A   L EM + G  P
Sbjct: 319 ETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAP 363



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 4/250 (1%)

Query: 1   MWKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW      +E M    L+++ Q  + +I    K G +D A+ +  +  +  C   +  YN
Sbjct: 380 MWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYN 439

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++++ LC  +    A  +   ++ +G V +  TY  +++A    G+ ++A    +EM   
Sbjct: 440 TIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILH 499

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +  V   + L++ +   G ++ +  ++ +M ++G   +  ++N LI  +CK   V   
Sbjct: 500 GCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDA 559

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E+   +   GL  D+ TY  LI  + K G +  A  LL  L  +   P    Y  +I  
Sbjct: 560 LELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISW 619

Query: 237 MFRRGQFDDA 246
             +    DDA
Sbjct: 620 HCKVRLLDDA 629



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 81/164 (49%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+++ AL     +  A  L + MI  G   D  +Y  L+ A C  G +  +   L+E
Sbjct: 471 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 530

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M++KG  P     ++L+  L     +  A ++  +M+ QG   D+ T+N+LI  +CK G 
Sbjct: 531 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 590

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +   + +   +    +  D+ TY ILI    K  ++D+A  LL+
Sbjct: 591 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLN 634



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 61/127 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G VD ++ +  +      +   + YN L+  LC+ +    A  L ++M+ +G
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 570

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N  C  G M  A   L+++ ++  +P +   ++L+        L+ A 
Sbjct: 571 LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAA 630

Query: 143 QMVNKMI 149
            ++N+ +
Sbjct: 631 MLLNRAM 637



 Score = 42.0 bits (97), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N+S +     ++I E  K   V +A+E+  +         ++ YN+L+  LC++  
Sbjct: 536 IKPNNVSYN-----ILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGW 590

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
            H A  L+ ++  +   PD  TY IL++  C    + +A   L  
Sbjct: 591 MHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNR 635


>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
          Length = 501

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 135/275 (49%), Gaps = 11/275 (4%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L    C VK    A  ++R+M+  G  P K TY I++  +  SG+++ A +F  +M 
Sbjct: 212 YNTLADGWCRVKDTSRALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMK 271

Query: 115 DKGFN-----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            +G N     P V     ++ GL  AG L+ A+++ ++M  +G      T+N+LI+  CK
Sbjct: 272 RRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCK 331

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G +E  V ++  + + G   +V TY +LI  +  AG +  A +LL  +  +G +P    
Sbjct: 332 KGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQT 391

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLIT---MCGRGGRFVEAANY 284
           Y  +I+     G+ +     F  M  KG    PN+  Y ++I+   +  R      AA  
Sbjct: 392 YNVLIRYSLEEGEIEKGLDLFETMS-KGEECLPNQDTYNIIISAMFVRKRAEDMAVAARM 450

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +VEM + G  P    F+ V +GL   G  +L+ ++
Sbjct: 451 VVEMVDRGYLPRKFMFNRVLNGLMLTGNQELSREL 485



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 114/233 (48%), Gaps = 9/233 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF-----NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           T ++I++ F + G + +A + F           NC+  V+ Y ++L  L        A  
Sbjct: 246 TYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARK 305

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +   M  +G  P   TY  L+   C  G + +A     +M  KG+ P V    +L++GL 
Sbjct: 306 VFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMVRKGYIPNVVTYTVLIRGLC 365

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADV 192
           +AG +  A +++++M  +G   +++T+N LI    + GE+E  ++++ ++ K   C  + 
Sbjct: 366 HAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEEGEIEKGLDLFETMSKGEECLPNQ 425

Query: 193 STYKILIPAV---SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
            TY I+I A+    +A  +  A R++  +V+ G+ P   ++  ++ G+   G 
Sbjct: 426 DTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRKFMFNRVLNGLMLTGN 478



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 8/182 (4%)

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   DL  FNSL++ + KS        +  ++ +     D  TY  L     +      
Sbjct: 169 HGIAQDLPLFNSLLDALVKSRRASKAASLVRAL-EQRFPPDAVTYNTLADGWCRVKDTSR 227

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVY 265
           A  +L  +VE G  P  + Y  I+KG FR GQ   A+ FF +MK +G       P+   Y
Sbjct: 228 ALDILRQMVESGIAPTKATYNIILKGFFRSGQLQHAWDFFLQMKRRGSNDENCKPDVVSY 287

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           T ++   G  G+  +A     EM+  G  P +  ++ +      C K +L + + + +  
Sbjct: 288 TTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQ--VTCKKGNLEDAVAVFDDM 345

Query: 326 LR 327
           +R
Sbjct: 346 VR 347


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 158/346 (45%), Gaps = 38/346 (10%)

Query: 12  NLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           +  ++P+T   ++++ +F + G + +A +VF++    + Q  V+ +N+L+  +C  +   
Sbjct: 179 DAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLD 237

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-------- 121
               L + M   G  PD  TY  L+  +C +G+M  A +   EM D G NP         
Sbjct: 238 AVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297

Query: 122 --------------------VRG-------RDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                               VRG        + LV GL  A  L++A+ +V +M   G  
Sbjct: 298 DAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLK 357

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D  T+ +LI+  CK G+++  +++   + +  +  D  TY  LI  +SKAG   +A R+
Sbjct: 358 PDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERV 417

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  ++E   +P  + Y  +I    R+G     F    EM+ KG  P    Y +++    +
Sbjct: 418 LREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCK 477

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
            G+   A   L  M  +G++P    ++++ DG    GK   +E++E
Sbjct: 478 LGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELE 523



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 2/245 (0%)

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R+   P   T+  L++  C +  +       +EMSD G  P V     L++G    G +
Sbjct: 212 MRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRM 271

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +M N+M   G   +   F +LI+  CK G V   +++Y  +   G+  D+  Y  L
Sbjct: 272 ENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNAL 331

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +A  +  A  ++  +   G KP    Y  +I G  + G+ D A     +M  K  
Sbjct: 332 VNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEV 391

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI+   + GR V+A   L EM E  L P +  + +V D    C K D+   
Sbjct: 392 SLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAF--CRKGDVKTG 449

Query: 319 IELLE 323
            +LL+
Sbjct: 450 FKLLK 454



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 123/261 (47%), Gaps = 5/261 (1%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           +  V+P  +  + +I+   K G V+  ++++           ++ YN+L+  LC  +   
Sbjct: 283 DTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLK 342

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A +++  M   G  PDK TY  L++  C  GK+  A +  Q+M++K  +        L+
Sbjct: 343 AAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALI 402

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL  AG    A++++ +M++     D  T+  +I+  C+ G+V+   ++   +   G  
Sbjct: 403 SGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKK 462

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY +++  + K G +  A  LLH ++  G  P    Y  ++ G  + G+  ++   
Sbjct: 463 PGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEEL 522

Query: 250 FSEMKIKGHPPNRPVYTMLIT 270
            S    KG  P+  VYT LI+
Sbjct: 523 ESS---KGMVPDFAVYTSLIS 540



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 98/200 (49%), Gaps = 3/200 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   L     T + +I+   K G +D A+++  K          + Y +L+  L +
Sbjct: 348 VEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSK 407

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+     PD  TY ++++A+C  G ++   + L+EM +KG  P V  
Sbjct: 408 AGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVT 467

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ GL   G +++A  +++ M+  G   D  T+N L++  CK G+V    E+  S  
Sbjct: 468 YNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESSK- 526

Query: 185 KLGLCADVSTYKILIPAVSK 204
             G+  D + Y  LI  ++K
Sbjct: 527 --GMVPDFAVYTSLISELAK 544


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K   + +A E+        C    L++N ++ ALC+      AY  I  M
Sbjct: 12  TFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGYIETM 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY IL++ +C   K+  A E LQEM+ +G  P     +  + GL   G +
Sbjct: 72  RSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   M ++   LD+  + +LI+ +C++G++     +   +   G       Y  +
Sbjct: 132 DDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAI 191

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   I+EA +L   +   G  P    +  ++ G  R  + DDA     +MK  G 
Sbjct: 192 LSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGL 251

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P   +Y  LI    R GR  EA   L EM   GL+P SR + L+
Sbjct: 252 APREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 2/246 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG +P   T+ ILV+  C + ++ +A E ++ M+++G  P     + ++  L   G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A   +  M   G    + T+N LI+  CK  ++   +E+   +   G   +  TY  
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +  + K G +D+A  L   + E   +     Y  +I G+ + G+  +A+    EM+  G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P    Y  +++   +G R  EA      MT  G+ P    F ++  G   C  H + +
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGY--CRGHRIDD 238

Query: 318 KIELLE 323
            + LL+
Sbjct: 239 ALLLLQ 244


>gi|15232243|ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g60050
 gi|7076758|emb|CAB75920.1| putative protein [Arabidopsis thaliana]
 gi|332646485|gb|AEE80006.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 473

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 136/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M       + +T +L+I   G+ GL   AV  F K   FN +     YN++L 
Sbjct: 168 MWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILN 227

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  VK +     + ++M+  GF PD  TY IL+      GKM        EM+  GF+P
Sbjct: 228 SLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSP 287

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A   +N M + G    +  + +LI+ + ++G +E C    
Sbjct: 288 DSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFL 347

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     +G +D+A  +   +   G  P    Y  +I+G+   
Sbjct: 348 DEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMA 407

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A     EM+ +G  PN  VY+ L++   + G+  EA   + EM + G
Sbjct: 408 GEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKG 459



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 116/262 (44%), Gaps = 6/262 (2%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-Q 107
           +  V  Y+ L+    E   +   + L+  M++ GF    RT+ +L+   CS G+   A Q
Sbjct: 146 RHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLI---CSCGEAGLAKQ 202

Query: 108 EFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
             +Q M  K FN  P     + ++  LL     +  + +  +M++ GF  D+ T+N L+ 
Sbjct: 203 AVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLW 262

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           T  + G+++    ++  + + G   D  TY IL+  + K      A   L+++ E G  P
Sbjct: 263 TNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDP 322

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I G+ R G  +    F  EM   G  P+   YT++IT     G   +A    
Sbjct: 323 SVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMF 382

Query: 286 VEMTEMGLTPISRCFDLVTDGL 307
            EMT  G  P    ++ +  GL
Sbjct: 383 REMTVKGQLPNVFTYNSMIRGL 404



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 6/234 (2%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           +Y +L+  +   G+ +     + EM   GF    R  +LL+     AG    AKQ V + 
Sbjct: 151 SYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGL---AKQAVVQF 207

Query: 149 IKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +K     +     ++N+++ ++    + +    +Y  + + G   DV TY IL+    + 
Sbjct: 208 MKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRL 267

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D   RL   +  DG  P    Y  ++  + +  +   A    + MK  G  P+   Y
Sbjct: 268 GKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHY 327

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           T LI    R G       +L EM + G  P   C+ ++  G    G+ D A+++
Sbjct: 328 TTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEM 381



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 6/206 (2%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           FL     + F   V    LL++     G  ++  ++V++M++ GF     TFN LI +  
Sbjct: 136 FLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCG 195

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA---VSKAGMIDEAFRLLHNLVEDGHKP 225
           ++G  +  V  +             +Y  ++ +   V +  +I+  ++    ++EDG  P
Sbjct: 196 EAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYK---QMLEDGFSP 252

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  ++   +R G+ D     F EM   G  P+   Y +L+ + G+G + + A   L
Sbjct: 253 DVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTL 312

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCG 311
             M E+G+ P    +  + DGL   G
Sbjct: 313 NHMKEVGIDPSVLHYTTLIDGLSRAG 338



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T+  MK   +  S    + +I+   + G ++      ++     C+  V+ Y  ++    
Sbjct: 311 TLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYV 370

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                  A  + R M  KG +P+  TY  ++   C +G+ REA   L+EM  +G NP   
Sbjct: 371 VSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFV 430

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
               LV  L  AG L  A++++ +M+K+G  + L
Sbjct: 431 VYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHL 464


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 148/303 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + +M+  N     +T S++I+   K   +D A+ + N+    N    +  YNSL+  LC+
Sbjct: 191 LRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCK 250

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +  +     L+  M+     P+  T++IL++  C  GK+ +A E ++ M +KG  P +  
Sbjct: 251 LGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIIT 310

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ G    G ++ A+++ N +  +G   ++ +++ LI   CK   +   ++++  + 
Sbjct: 311 YSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEIS 370

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  D  TY  ++  + + G I +A ++   ++  G  P   L++ ++ G F+ G  +
Sbjct: 371 QKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVE 430

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   FS+++      N   YT++I    +  R  EA     ++  +GL P  R ++++ 
Sbjct: 431 EAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMI 490

Query: 305 DGL 307
            G 
Sbjct: 491 TGF 493



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 150/320 (46%), Gaps = 3/320 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +S   L+++   +     +D A  V            V+ +N+LL  L     
Sbjct: 88  MRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENK 147

Query: 68  FHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
              A  L ++++R+    P++  Y  ++N     G   +    L+ M      P VR   
Sbjct: 148 VTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYS 207

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++  L     L++A  ++N+M ++    ++ T+NSLI+ +CK G+ E    +   +  L
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +V T+ ILI  + K G +++A  ++ +++E G +P    Y+ I+ G   RGQ D A
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F+ ++ KG  PN   Y++LI    +     +A     E+++ GL P +  +  +  G
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 307 LKNCGKHDLAEKI--ELLEV 324
           L   G+   A+KI  E+L V
Sbjct: 388 LIEVGRIGDAKKIFDEMLRV 407



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 1/264 (0%)

Query: 33  VDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           V +AV +F K      C+   ++Y +++  L +        +L+R M +    PD RTY+
Sbjct: 148 VTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYS 207

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           I+++A C    +  A   L EM  K   P +   + L+ GL   G  E  K ++++M+  
Sbjct: 208 IVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNL 267

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
               ++ TF+ LI+ +CK G+VE   E+   + + G+  D+ TY  ++      G +D A
Sbjct: 268 NINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRA 327

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            R+ + L + G KP    Y+ +I G  ++     A   F E+  KG  P+   Y+ ++  
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
               GR  +A     EM  +G TP
Sbjct: 388 LIEVGRIGDAKKIFDEMLRVGPTP 411



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 143/310 (46%), Gaps = 9/310 (2%)

Query: 2   WKTIE--LMKPYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+ ++  L +  NL+++P   T S++I+   K G V++A EV         +  ++ Y++
Sbjct: 254 WEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSA 313

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++   C       A  +   +  KG  P+  +Y+IL+N +C    + +A +   E+S KG
Sbjct: 314 IMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKG 373

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P       ++ GL+  G +  AK++ ++M++ G   D+   ++L+    K G VE  +
Sbjct: 374 LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAM 433

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  + +     ++S Y ++I  + K   + EA  +   L   G  P    Y  +I G 
Sbjct: 434 LLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGF 493

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G FD+      +M+  G P N   Y +++    R  +  E  +++ EM   G +   
Sbjct: 494 CREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFS--- 550

Query: 298 RCFDLVTDGL 307
             FD  T G+
Sbjct: 551 --FDATTTGV 558



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 136/300 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N+  +  T + +I+   K G  +    + ++    N    V  ++ L+  LC+   
Sbjct: 229 MKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGK 288

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++R MI KG  PD  TY+ +++ +C  G++  A+     + DKG  P +    +
Sbjct: 289 VEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSI 348

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L  A Q+  ++ ++G   D  T+++++  + + G +    +++  + ++G
Sbjct: 349 LINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVG 408

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D+  +  L+    K G+++EA  L   L  +      S Y  +I G+ +  +  +A 
Sbjct: 409 PTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAH 468

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F ++   G  P+   Y ++IT   R G F E    L +M + G    +  ++++  G 
Sbjct: 469 AIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGF 528



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+GLV+ A+ +F+K         +  Y  ++  LC+      A+A+  ++   G +PD R
Sbjct: 425 KYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVR 484

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +++  +C  G   E +  L++M D G        ++++QG   +  +      + +M
Sbjct: 485 TYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEM 544

Query: 149 IKQGFVLDLETFNSLIETI 167
             +GF  D  T   LI  +
Sbjct: 545 AGRGFSFDATTTGVLINVL 563



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 82/181 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+    + G + +A ++F++         + L+++LLF   +  L   A  L  ++
Sbjct: 380 TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKL 439

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R     +   Y +++N  C + ++REA    +++   G  P VR  ++++ G    G  
Sbjct: 440 ERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLF 499

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +  K ++ KM   G   +  T+N +++   +S ++   V     +   G   D +T  +L
Sbjct: 500 DEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVL 559

Query: 199 I 199
           I
Sbjct: 560 I 560


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 121/258 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L VS  + + II+ F K G +D+AV  + +         V+ Y SL+  LC+      A 
Sbjct: 580 LCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQAL 639

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M  KG   D   Y  L++ +C    M  A     E+ ++G NP     + L+ G 
Sbjct: 640 EMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGF 699

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            N G + +A  +  KM+K G   DL T+ +LI+ + K G +    E+Y  +  +GL  D 
Sbjct: 700 RNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDE 759

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y +++  +SK G   +  ++   + ++   P   +Y  +I G +R G  D+AF    E
Sbjct: 760 IIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDE 819

Query: 253 MKIKGHPPNRPVYTMLIT 270
           M  KG  P+   + +L++
Sbjct: 820 MLDKGILPDGATFDILVS 837



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 41/335 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I+   ++    NA+EV N  T+ N +   ++Y +++  LC+V  
Sbjct: 509 LKPNNY-----TYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQ 563

Query: 68  FHGAYALIRRMIRK------------------------------------GFVPDKRTYA 91
              A  L+  MI +                                    G  P+  TY 
Sbjct: 564 TSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYT 623

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L+N  C + +M +A E   EM +KG    +     L+ G      +ESA  + ++++++
Sbjct: 624 SLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEE 683

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G       +NSLI      G +   +++Y  + K GL  D+ TY  LI  + K G +  A
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILA 743

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   +   G  P   +Y  I+ G+ ++GQF      F EMK     PN  +Y  +I  
Sbjct: 744 SELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAG 803

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             R G   EA     EM + G+ P    FD++  G
Sbjct: 804 HYREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 838



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 141/311 (45%), Gaps = 3/311 (0%)

Query: 8   MKPYNLSV-SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           MK   L V S +T + +I    K G +D+A+ + ++  +      V+   SL+   C+  
Sbjct: 294 MKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNN 353

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L  +M ++G  P+  T+++L+  +  +G+M +A EF ++M   G  P V    
Sbjct: 354 DLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVH 413

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++QG L     E A ++ ++  + G   ++   N+++  +CK G+ +   E+   +   
Sbjct: 414 TIIQGWLKGQKHEEALKLFDESFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESR 472

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  +V +Y  ++    +   +D A  +  N++E G KP    Y+ +I G FR     +A
Sbjct: 473 GIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNA 532

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTD 305
               + M       N  VY  +I    + G+  +A   L  M E     +S   ++ + D
Sbjct: 533 LEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIID 592

Query: 306 GLKNCGKHDLA 316
           G    G+ D A
Sbjct: 593 GFFKEGEMDSA 603



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 125/319 (39%), Gaps = 35/319 (10%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILV 94
           A+EV ++      +   LLY+  + A C+      A +L+R M  K   VP + TY  ++
Sbjct: 252 ALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVI 311

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            A    G M +A     EM   G +  V     L+ G      L SA  + +KM K+G  
Sbjct: 312 LASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPS 371

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC------------------------- 189
            +  TF+ LIE   K+GE+E  +E Y  +  LGL                          
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431

Query: 190 ---------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                    A+V     ++  + K G  DEA  LL  +   G  P    Y  ++ G  R+
Sbjct: 432 FDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQ 491

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              D A   FS +  KG  PN   Y++LI  C R      A   +  MT   +      +
Sbjct: 492 KNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVY 551

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             + +GL   G+   A ++
Sbjct: 552 QTIINGLCKVGQTSKAREL 570



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 11/282 (3%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N LL A  + +    A  ++ +M+    +P        ++A      + EA+E    M 
Sbjct: 166 FNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMV 225

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLE----SAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
             G    V G ++  Q L+ A   E     A +++++ I++G   D   ++  ++  CK+
Sbjct: 226 AIG----VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKT 281

Query: 171 GEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            ++     +   + +  LC     TY  +I A  K G +D+A RL   ++ DG       
Sbjct: 282 LDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVA 341

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
              +I G  +      A   F +M+ +G  PN   +++LI    + G   +A  +  +M 
Sbjct: 342 ATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKME 401

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLRSV 329
            +GLTP       +  G     KH+ A K+  E  E  L +V
Sbjct: 402 VLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANV 443



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 5/209 (2%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF    R  + L+         + A  +VN+M++   +      N  +  + +   +   
Sbjct: 158 GFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEA 217

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +  +G+  D  T ++L+ A  +     EA  +L   +E G +P   LY+  ++ 
Sbjct: 218 KELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQA 277

Query: 237 MFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT- 294
             +      A     EMK K    P++  YT +I    + G   +A     EM   G++ 
Sbjct: 278 CCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISM 337

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +     L+T    +C  +DL   + L +
Sbjct: 338 NVVAATSLITG---HCKNNDLVSALVLFD 363


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 142/306 (46%), Gaps = 2/306 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V P   T + +I    + G V +A+ V +      C   V+ YN LL A C+ + +  
Sbjct: 1   MPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQ 60

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  LI  M  +G  P+  TY +L++  C  G + +A E L+ +   G  P     + +++
Sbjct: 61  AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 120

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL +A     A ++V +M+++    +  TFN +I ++C+ G ++  +++   + K G  A
Sbjct: 121 GLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA 180

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++ TY  +I  + +   +D A  LL  +   G KP    Y  ++KG+    ++ DA    
Sbjct: 181 NIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELM 240

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             M   G  P+   +  LI    + G  V+A     +M + G TP S  +  +  GL   
Sbjct: 241 DNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKA 300

Query: 311 GKHDLA 316
            K D A
Sbjct: 301 TKLDQA 306



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 159/321 (49%), Gaps = 1/321 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+LM+    + +  T +++++     G VD+A+E+     +  C+   + YN++L  LC 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + +  A  L+  M+R+   P++ T+ +++ + C  G +++A + L++MS  G    +  
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 184

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL     ++ A  +++KM   G   D+ T+N+L++ +C +       E+  ++ 
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT 244

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   D  T+  LI  + + G++ +A  +   + + G  P    Y+ II G+ +  + D
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLD 304

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F+EM  KG  P++ +Y +L           EA   + ++ + G++P +  ++ + 
Sbjct: 305 QALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAIL 363

Query: 305 DGLKNCGKHDLAEKIELLEVS 325
            GL   GK + A  I    VS
Sbjct: 364 LGLCRNGKTEFAIDIMAYMVS 384



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 131/277 (47%), Gaps = 1/277 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N   +  T +++I    + GL+  A+++  K +   C   ++ YN+++  LCE +   GA
Sbjct: 142 NCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGA 201

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+ +M   G  PD  TY  L+   CS+ +  +A+E +  M+  G  P     + L+  
Sbjct: 202 MGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGF 261

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G +  A ++  +M  +G   +  T++++I  + K+ +++  +E++  +   G   D
Sbjct: 262 LCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPD 321

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y++L   ++    I+EA + +  L + G  P   LY  I+ G+ R G+ + A    +
Sbjct: 322 -KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMA 380

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            M   G  P+   Y +LI      G   EA   L+++
Sbjct: 381 YMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 34/245 (13%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +  + +  T + II    +   VD A+ + +K  ++ C+  ++ YN+LL  LC 
Sbjct: 170 LEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCS 229

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A  L+  M + G +PD  T+  L+   C  G M +A E  ++M DKG  P    
Sbjct: 230 AARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSIT 289

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-------------------LET------ 159
              ++ GL  A  L+ A ++ N+M  +GF  D                   ++T      
Sbjct: 290 YSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQD 349

Query: 160 ---------FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                    +N+++  +C++G+ EF +++   +   G   D  TY ILI  ++  G ++E
Sbjct: 350 SGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNE 409

Query: 211 AFRLL 215
           A  LL
Sbjct: 410 ARELL 414



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 39/275 (14%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P+  TY  L++  C  G++R+A   L +M  +G  P V   ++L++          A ++
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM---------------YYSVCKLGLC 189
           ++ M  +G   +  T+N L++ +C  G+V+  +E+               Y +V K GLC
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK-GLC 123

Query: 190 A---------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           +                     + +T+ ++I ++ + G++ +A +LL  + + G      
Sbjct: 124 SAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 183

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  II G+  +   D A    S+MK  G  P+   Y  L+       R+V+A   +  M
Sbjct: 184 TYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNM 243

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T+ G  P +  F+ +   L  C K  + + IE+ +
Sbjct: 244 TQNGCLPDNVTFNTLIGFL--CQKGLMVDAIEVFK 276



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    Y P+I  +  RGQ  DA     +M  +G  P+   Y +L+    +G  + +A  
Sbjct: 4   QPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAME 63

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +  M   G TP +  ++++ DG+  CG+ D+ + +ELL
Sbjct: 64  LIDLMRAEGCTPNNVTYNVLMDGM--CGEGDVDDALELL 100



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC--TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T S II    K   +D A+E+FN+     FN  +   +Y  L   L +      A   +R
Sbjct: 289 TYSTIISGLAKATKLDQALELFNEMGHKGFNPDK---IYQLLAECLNDDDTIEEAIQTVR 345

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           ++   G  P    Y  ++   C +GK   A + +  M   G  P      +L++GL   G
Sbjct: 346 KLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEG 405

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           YL  A++++ K+  +  ++     NSLI++
Sbjct: 406 YLNEARELLIKLCSRDVLV-----NSLIKS 430



 Score = 45.4 bits (106), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 9/117 (7%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L+ E       ++ A++   K          +LYN++L  LC       A  ++  M+  
Sbjct: 326 LLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSS 385

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           G +PD  TY IL+      G + EA+E L ++           RD+LV  L+ +  L
Sbjct: 386 GCMPDDLTYVILIEGLAYEGYLNEARELLIKLC---------SRDVLVNSLIKSEAL 433


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 136/321 (42%), Gaps = 35/321 (10%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+S     L+ +I    KHG    AVE++ K             N+LL  LCE       
Sbjct: 457 NMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEG 516

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + + + ++ +GFV D+ +Y  L++  C + K+ EA  F+ EM  KG  P      +L++G
Sbjct: 517 FRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRG 576

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLET-------------------------------- 159
           LLN   +E A Q      + G + D+ T                                
Sbjct: 577 LLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPN 636

Query: 160 ---FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
              +N LI   C+SG +   +E+   +   G+  + +TY  LI  +S    ++EA  LL 
Sbjct: 637 TVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLE 696

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +  +G +P    Y  +I G  + GQ     C   EM  K   PN+  YT++I    R G
Sbjct: 697 EMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDG 756

Query: 277 RFVEAANYLVEMTEMGLTPIS 297
              EA+  L EM E G+ P S
Sbjct: 757 NVTEASRLLHEMREKGIVPDS 777



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 37/335 (11%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     +  I  F K G V+ A+E+F+K         V+ YN+++  L     +  A+
Sbjct: 248 VSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAF 307

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M+ +G  P   TY+ILV     + ++ +A   L+EM++KGF P V   + L+  L
Sbjct: 308 MFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSL 367

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           + AG L  A ++ + M+ +G  L   T+N+LI+  CKSG+ +    +   +  +G   + 
Sbjct: 368 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQ 427

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR------------ 240
            ++  +I  +    M D A R +  ++     P   L   +I G+ +             
Sbjct: 428 GSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLK 487

Query: 241 -----------------------GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
                                  G+ ++ F    E+  +G   +R  Y  LI+ C    +
Sbjct: 488 FLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKK 547

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             EA  ++ EM + GL P +  + ++  GL N  K
Sbjct: 548 LDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNK 582



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 132/305 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M     +V+  + + +I     H + D+A+    +    N      L  +L+  LC+   
Sbjct: 418 MLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGK 477

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  + + KGF+ D +T   L++  C +GK+ E     +E+  +GF       + 
Sbjct: 478 HSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNT 537

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      L+ A   +++M+K+G   D  T++ LI  +    +VE  ++ +    + G
Sbjct: 538 LISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNG 597

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV TY ++I    KA   +E  +L   ++ +  +P   +Y  +I    R G+   A 
Sbjct: 598 MIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMAL 657

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +MK KG  PN   YT LI       R  EA   L EM   GL P    +  + DG 
Sbjct: 658 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY 717

Query: 308 KNCGK 312
              G+
Sbjct: 718 GKLGQ 722



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 126/288 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++   K   + +A  V  + T       V++YN+L+ +L E    + A  +   M
Sbjct: 324 TYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLM 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG      TY  L+  +C SG+   A+  L+EM   GFN        ++  L +    
Sbjct: 384 VSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMF 443

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA + V +M+ +          +LI  +CK G+    VE++      G   D  T   L
Sbjct: 444 DSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNAL 503

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +AG ++E FR+   ++  G       Y  +I G     + D+AF F  EM  KG 
Sbjct: 504 LHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGL 563

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            P+   Y++LI       +  EA  +  +    G+ P    + ++ DG
Sbjct: 564 KPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDG 611



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 117/243 (48%), Gaps = 6/243 (2%)

Query: 87  KRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           ++   +L+  +C+  K      A +    +++KG  P     ++L+  L+ A   +   +
Sbjct: 180 RKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCE 239

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
             + ++ +G   D+  F + I   CK G+VE  +E++  + + G+  +V TY  +I  + 
Sbjct: 240 AFH-VVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLG 298

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            +G  DEAF     +VE G +P    Y+ ++KG+ +  +  DA+C   EM  KG PPN  
Sbjct: 299 MSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVI 358

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--EL 321
           VY  LI      G   +A      M   GL+  S  ++ +  G    G+ D+AE++  E+
Sbjct: 359 VYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEM 418

Query: 322 LEV 324
           L +
Sbjct: 419 LSI 421



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 141/324 (43%), Gaps = 27/324 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-------LYNSLLF---ALCEVKLF 68
           +LSL  +E  +  + D  +EV+  CT F    C L       L N  +F     C + L 
Sbjct: 169 SLSLCFDEEIRRKMSDLLIEVY--CTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILL- 225

Query: 69  HGAYALIR-----------RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
               +L+R            ++ KG  PD   +   +NA+C  GK+ EA E   +M + G
Sbjct: 226 ---TSLVRATEFQKCCEAFHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAG 282

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + ++ GL  +G  + A     KM+++G    L T++ L++ + K+  +    
Sbjct: 283 VVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAY 342

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   + + G   +V  Y  LI ++ +AG +++A  +   +V  G     S Y  +IKG 
Sbjct: 343 CVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 402

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + GQ D A     EM   G   N+  +T +I +      F  A  ++ EM    ++P  
Sbjct: 403 CKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGG 462

Query: 298 RCFDLVTDGLKNCGKHDLAEKIEL 321
                +  GL   GKH  A ++ L
Sbjct: 463 GLLTTLISGLCKHGKHSKAVELWL 486



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 1/167 (0%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T N L+ ++ ++ E + C E ++ VCK G+  DV  +   I A  K G ++EA  L   +
Sbjct: 220 TCNILLTSLVRATEFQKCCEAFHVVCK-GVSPDVYLFTTAINAFCKGGKVEEAIELFSKM 278

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G  P    Y  +I G+   G++D+AF F  +M  +G  P    Y++L+    +  R 
Sbjct: 279 EEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRI 338

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            +A   L EMTE G  P    ++ + D L   G  + A +I+ L VS
Sbjct: 339 GDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVS 385



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 5/240 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I        V+ A++ +  C        V  Y+ ++   C+ + 
Sbjct: 563 LKPDNY-----TYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAER 617

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L   M+     P+   Y  L+ A+C SG++  A E  ++M  KG +P       
Sbjct: 618 TEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTS 677

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++G+     +E AK ++ +M  +G   ++  + +LI+   K G++     +   +    
Sbjct: 678 LIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 737

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY ++I   ++ G + EA RLLH + E G  P    Y   I G  ++G    AF
Sbjct: 738 VHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAF 797



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 85/195 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K    +   ++F++  + N Q   ++YN L+ A C       A  L   M
Sbjct: 604 TYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDM 663

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+       ++ EA+  L+EM  +G  P V     L+ G    G +
Sbjct: 664 KHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQM 723

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + ++ +M  +    +  T+  +I    + G V     + + + + G+  D  TYK  
Sbjct: 724 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEF 783

Query: 199 IPAVSKAGMIDEAFR 213
           I    K G + +AF+
Sbjct: 784 IYGYLKQGGVLQAFK 798


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 127 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 186

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 187 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 246

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G++     +   +   GL  D  TY  LI
Sbjct: 247 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  II G+ + G+  DA     EM   G  
Sbjct: 307 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK 366

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 367 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L +++ F   +     ++
Sbjct: 57  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 116

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 117 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 176

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 177 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 236

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G  + A     EM +KG  
Sbjct: 237 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLK 296

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 297 PDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKM 356

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 357 LREMLSVGLK 366



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 148 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 207

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 208 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 267

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L  A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 268 NTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQ 327

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  +I  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 328 ENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWK 387

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
                 EM+  GH P+   Y +L+ 
Sbjct: 388 GSKLLKEMQRNGHVPSVXTYNVLMN 412



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 196 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G + +A   + EMS KG  P       L+ G    G L
Sbjct: 256 LSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + ++I  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 316 DAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMI 375

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  +GH P    Y  ++ G
Sbjct: 376 INEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 140/314 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +   ++K   L VS    + ++    K G VD A E++ +      Q  V   N ++ AL
Sbjct: 48  EAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINAL 107

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +      + +  M  KG  PD  TY  L+NA+C  G + EA E +  MS KG  P V
Sbjct: 108 CKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 167

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++ GL   G    AK ++++M+K G   D  T+N L+   C++  +     ++  
Sbjct: 168 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 227

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  D+ ++  LI  +SK G +D+A +   ++   G  P   +Y  +I G  R G 
Sbjct: 228 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 287

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A     EM  +G   +   Y  ++    +     EA     EMTE G+ P    F  
Sbjct: 288 MSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 347

Query: 303 VTDGLKNCGKHDLA 316
           + +G    G  + A
Sbjct: 348 LINGYSKDGNMNKA 361



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+      +++I  F ++G++  A++V ++     C   V+ YN++L  LC+ K+
Sbjct: 263 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 322

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G  PD  T+  L+N +   G M +A    + M  +   P V   + 
Sbjct: 323 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 382

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      +E   ++ N MI +    +  ++  LI   C  G V     ++  + + G
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             A + T   ++    +AG   +A   L N++  G  P    Y  +I G  +    D AF
Sbjct: 443 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 502

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              ++M+  G  P+   Y +++    R GR  EA   +++M E G+ P    +  + +G
Sbjct: 503 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 561



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G ++ AV +F      N +  V+ YN+L+   C+         L   M
Sbjct: 344 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 403

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  +Y IL+N +C+ G + EA     EM +KGF   +   + +V+G   AG  
Sbjct: 404 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 463

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + ++ M+ +G V D  T+N+LI    K   ++    +   +   GL  DV TY ++
Sbjct: 464 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 523

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G + EA  ++  ++E G  P  S Y  +I G   +    +AF    EM  +G 
Sbjct: 524 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 583

Query: 259 PPN 261
            P+
Sbjct: 584 VPD 586



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 135/310 (43%), Gaps = 35/310 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GL++ A E+ +  +    + CV  YN+++  LC+   +  A  ++  M
Sbjct: 134 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 193

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG-------------- 124
           ++ G  PD  TY IL+   C +  M +A+    EM  +G  P +                
Sbjct: 194 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 253

Query: 125 -------RDL--------------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                  RD+              L+ G    G +  A ++ ++M++QG VLD+ T+N++
Sbjct: 254 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTI 313

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +  +CK   +    E++  + + G+  D  T+  LI   SK G +++A  L   +++   
Sbjct: 314 LNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNL 373

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +I G  +  + +     +++M  +   PN   Y +LI      G   EA  
Sbjct: 374 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 433

Query: 284 YLVEMTEMGL 293
              EM E G 
Sbjct: 434 LWDEMVEKGF 443



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 110/229 (48%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +LV  +  + K+RE  E  + +  KG    +   + L+ GL+  G+++ A ++  +++
Sbjct: 30  FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 89

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G  +++ T N +I  +CK+ ++E        + + G+  DV TY  LI A  + G+++
Sbjct: 90  RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 149

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EAF L+ ++   G KP    Y  II G+ + G++  A     EM   G  P+   Y +L+
Sbjct: 150 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 209

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             C R    ++A     EM   G+ P    F  +   L   G  D A K
Sbjct: 210 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 258



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 39/347 (11%)

Query: 13  LSVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           + +SP T +   L++E      ++D A  +F++  +      ++ +++L+  L +     
Sbjct: 196 IGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 254

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------------------------- 103
            A    R M   G  PD   Y IL+  +C +G M                          
Sbjct: 255 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 314

Query: 104 ---------REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                     EA E   EM+++G  P       L+ G    G +  A  +   MI++   
Sbjct: 315 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 374

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+N+LI+  CK  E+E   E++  +    +  +  +Y ILI      G + EAFRL
Sbjct: 375 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 434

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +VE G +        I+KG  R G    A  F S M +KG  P+   Y  LI    +
Sbjct: 435 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 494

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 A   + +M   GL P    ++++ +G    G+   AE I L
Sbjct: 495 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 541



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 2/282 (0%)

Query: 44  TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103
           T  NC    L+++ L+    + +         R +  KG          L+      G +
Sbjct: 19  TYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWV 78

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
             A E  QE+   G    V   ++++  L     +E+ K  ++ M ++G   D+ T+N+L
Sbjct: 79  DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 138

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C+ G +E   E+  S+   GL   V TY  +I  + K G    A  +L  +++ G 
Sbjct: 139 INAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGM 198

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P  + Y  ++    R     DA   F EM  +G  P+   ++ LI +  + G   +A  
Sbjct: 199 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 258

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLE 323
           Y  +M   GL P +  + ++  G    G    A K+  E+LE
Sbjct: 259 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLE 300



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+M   NL     T + +I+ F K   ++   E++N   +       + Y  L+   C +
Sbjct: 366 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 425

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ L   M+ KGF     T   +V  +C +G   +A EFL  M  KG  P     
Sbjct: 426 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 485

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G +    ++ A  +VNKM   G + D+ T+N ++    + G ++    +   + +
Sbjct: 486 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 545

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            G+  D STY  LI        + EAFR+   +++ G  P
Sbjct: 546 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 144/306 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + MK   L  + +T++++I+   K   +D A  +F       C      + SL+  
Sbjct: 290 FKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDG 349

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      AY +  RM+    +P+   Y  L+  +    +  +  +  +EM   G +P 
Sbjct: 350 LGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPD 409

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   +  +  +  AG  E  + +  ++  +GF+ D  +++ LI ++ K+G      E+YY
Sbjct: 410 LMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYY 469

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   G   D   Y  +I    K+G +++A++LL  +   GH P    Y  ++ G+ +  
Sbjct: 470 AMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKID 529

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A+  F E K  G   N+ +Y+ LI   G+ GR  EA   + EM + GLTP    ++
Sbjct: 530 RLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWN 589

Query: 302 LVTDGL 307
            + DGL
Sbjct: 590 CLLDGL 595



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 120/253 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+ +L +       Y L   M  +G V D R Y  +++ +C SGK+ +A + L+EM 
Sbjct: 448 YSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 507

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +P V     +V GL     L+ A  +  +    G  L+   ++SLI+   K G V+
Sbjct: 508 TMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVD 567

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+  + KA  I+EA     ++ +    P    Y  +I
Sbjct: 568 EAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILI 627

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+ AF F+ EM+ +G  PN   YT +I+   + G   +A++        G  
Sbjct: 628 NGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGI 687

Query: 295 PISRCFDLVTDGL 307
           P S  ++ + +GL
Sbjct: 688 PDSASYNAMIEGL 700



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 149/361 (41%), Gaps = 46/361 (12%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    MK   L     T + ++    K   +D AVE+F +        C   YN+++  
Sbjct: 151 WKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMG 210

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R   KG +P    Y  ++      GK  +A    +EM      P 
Sbjct: 211 YGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAM-PN 269

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY- 180
           +   ++++  L  AG +E+A ++ + M + G   ++ T N +I+ +CK+ +++    ++ 
Sbjct: 270 LPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFE 329

Query: 181 ---YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV------------------ 219
              Y VC      D +T+  LI  + K G +D+A+R+   ++                  
Sbjct: 330 GMDYKVCS----PDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNF 385

Query: 220 ------EDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
                 EDGHK           P   L    +  +F+ G+ +     F E+K +G  P+ 
Sbjct: 386 FKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDT 445

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y++LI    + G   E       M + G    +R ++ V DG    GK + A   +LL
Sbjct: 446 RSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKA--YQLL 503

Query: 323 E 323
           E
Sbjct: 504 E 504



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 148/342 (43%), Gaps = 41/342 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL--FALCEVKLFHGAYALIR 76
           T   +I+  GK G VD+A  ++ +    +    V++Y SL+  F  C+ K     + + +
Sbjct: 342 TFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRK--EDGHKMYK 399

Query: 77  RMIR-----------------------------------KGFVPDKRTYAILVNAWCSSG 101
            M+R                                   +GF+PD R+Y+IL+++   +G
Sbjct: 400 EMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAG 459

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
             RE  E    M D+G     R  + ++ G   +G +  A Q++ +M   G    + T+ 
Sbjct: 460 FARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYG 519

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           S+++ + K   ++    ++      G+  +   Y  LI    K G +DEA+ ++  +++ 
Sbjct: 520 SVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQK 579

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P    +  ++ G+ +  + ++A   F  MK     PN+  Y +LI    +  +F +A
Sbjct: 580 GLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKA 639

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             +  EM + GL P +  +  +  GL   G  ++A+   L E
Sbjct: 640 FVFWQEMQKQGLKPNTITYTAMISGLAKSG--NVAQASSLFE 679



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK           ++ I+ FGK G VD A + F++  A       + Y S++  LC+
Sbjct: 119 LDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCK 178

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  +M +   VP    Y  ++  + S+GK  EA   L+    KG  P V  
Sbjct: 179 ANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVA 238

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G  + A ++  +M K+  + +L T+N +I  +CK+G VE   ++  ++ 
Sbjct: 239 YNCILTCLGKKGKTDKALRIFEEM-KRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMK 297

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  +V T  I+I  + KA  +DEA  +   +      P  + +  +I G+ ++G+ D
Sbjct: 298 EAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVD 357

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DA+  +  M      PN  VYT LI    +  R  +      EM   G +P
Sbjct: 358 DAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSP 408



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 6/279 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFAL 62
           E +K        ++ S++I    K G      E++    A   Q CVL    YN+++   
Sbjct: 434 EEIKARGFLPDTRSYSILIHSLVKAGFARETYELY---YAMKDQGCVLDTRAYNTVIDGF 490

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    + AY L+  M   G  P   TY  +V+      ++ EA    +E    G     
Sbjct: 491 CKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQ 550

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G    G ++ A  ++ +M+++G   ++ T+N L++ + K+ E+   +  + S
Sbjct: 551 VIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQS 610

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +  L    +  TY ILI  + K    ++AF     + + G KP    Y  +I G+ + G 
Sbjct: 611 MKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGN 670

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
              A   F   +  G  P+   Y  +I       R ++A
Sbjct: 671 VAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDA 709



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 108/250 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK     +  +  + +I+ F K G V+ A ++  +         V+ Y S++  L ++  
Sbjct: 471 MKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDR 530

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L       G   ++  Y+ L++ +   G++ EA   ++EM  KG  P V   + 
Sbjct: 531 LDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNC 590

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL+ A  +  A      M       +  T+  LI  +CK  +       +  + K G
Sbjct: 591 LLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQG 650

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  +I  ++K+G + +A  L       G  P  + Y  +I+G+    +  DA+
Sbjct: 651 LKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAY 710

Query: 248 CFFSEMKIKG 257
             F E ++KG
Sbjct: 711 QLFEETRLKG 720



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 98/238 (41%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           GF P   T   LV +   S K+ EA + LQ M    F P       L+  L   G  +  
Sbjct: 21  GFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRM 80

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + N+M + G+ +++    +LI    + G V+  + +   +      AD+  Y + I  
Sbjct: 81  LALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDC 140

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K G +D A++  H +  +G  P    Y  ++  + +  + D+A   F +M+     P 
Sbjct: 141 FGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPC 200

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              Y  +I   G  G+F EA + L      G  P    ++ +   L   GK D A +I
Sbjct: 201 AYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRI 258



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 96/218 (44%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ L++ M    F P    Y  L+ A    G+         +M + G+   V     L++
Sbjct: 45  AFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIR 104

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G +++A  ++++M    F  D+  +N  I+   K G+V+   + ++ +   GL  
Sbjct: 105 VFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVP 164

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  TY  ++  + KA  +DEA  +   + ++   P    Y  +I G    G+FD+A+   
Sbjct: 165 DDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLL 224

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              + KG  P+   Y  ++T  G+ G+  +A     EM
Sbjct: 225 ERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEM 262



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 87/206 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   + ++    S +I+ FGK G VD A  V  +         V  +N LL  L + 
Sbjct: 539 EEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKA 598

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +  + A    + M      P++ TY IL+N  C   K  +A  F QEM  +G  P     
Sbjct: 599 EEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITY 658

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL  +G +  A  +  +    G + D  ++N++IE +  +       +++     
Sbjct: 659 TAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIANRALDAYQLFEETRL 718

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEA 211
            G      T   L+ A+ KA  +++A
Sbjct: 719 KGCSIHTKTCVALLDALHKAECLEQA 744



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +++   K   +D A  +F +  +   +   ++Y+SL+  
Sbjct: 500 YQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDG 559

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++    + ++ EA    Q M D    P 
Sbjct: 560 FGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPN 619

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQG   +  T+ ++I  + KSG V     ++ 
Sbjct: 620 QITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFE 679

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D ++Y  +I  +S A    +A++L  
Sbjct: 680 RFRASGGIPDSASYNAMIEGLSIANRALDAYQLFE 714



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 74/166 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L+ +  T + +++   K   ++ A+  F       C    + Y  L+  LC+
Sbjct: 573 MEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCK 632

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V+ F+ A+   + M ++G  P+  TY  +++    SG + +A    +     G  P    
Sbjct: 633 VRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSAS 692

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            + +++GL  A     A Q+  +   +G  +  +T  +L++ + K+
Sbjct: 693 YNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKA 738


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 6/283 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG-AYALIRRMIRK 81
           +I   GK G + +A+++F +  +  C   V+ YN+++ AL E K     A+    +M   
Sbjct: 341 LINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKEN 400

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G VP   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 401 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAA 460

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+ + K G +   V+++  + KLG   DV  Y  L+  
Sbjct: 461 NELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + + GM DEA  LL  + E+G  P  + +  I+ G  R G    A   F+ MK     P+
Sbjct: 521 MVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPD 580

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              Y  ++    R G F EAA  + EM   G       +DL+T
Sbjct: 581 VVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE-----YDLIT 618



 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 150/321 (46%), Gaps = 2/321 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWKTI+ M      + P  LS I++  GK  +V+ A+ +F +     C+     YNS++ 
Sbjct: 143 MWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMIL 202

Query: 61  ALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L +       + L   M  +G  +PD  TY+ L+ A+   G+   A     EM + G +
Sbjct: 203 MLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLH 262

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +    ++      G +E A  +V +M ++G  L + T+  LI+ + K+G+VE    +
Sbjct: 263 PTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSI 322

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           + ++ K G   DV     LI  + KAG + +A +L   +      P    Y  +IK +F 
Sbjct: 323 FMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFE 382

Query: 240 -RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            + +  +AF ++ +MK  G  P+   Y++LI    +  R  +A   L EM E G  P   
Sbjct: 383 SKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPA 442

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            +  + + L    +++ A ++
Sbjct: 443 AYCSLINALGKAKRYEAANEL 463



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 134/305 (43%), Gaps = 1/305 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  + +  + I+  + K G V+ A+ +  +     C   V  Y  L+  + +   
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGK 315

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY++   M+++G  PD      L+N    +G++ +A +  +EM      P V   + 
Sbjct: 316 VEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNT 375

Query: 128 LVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +    S A     KM + G V    T++ LI+  CK+  VE  + +   + + 
Sbjct: 376 VIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 435

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI A+ KA   + A  L   L E+       +YA +IK + + G+  +A
Sbjct: 436 GFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEA 495

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F+EMK  G  P+   Y  L++   R G   EA + L  M E G TP     +++ +G
Sbjct: 496 VDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555

Query: 307 LKNCG 311
               G
Sbjct: 556 FARTG 560



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 112/240 (46%), Gaps = 3/240 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +  S  T S++I+ F K   V+ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++      G++ EA +   EM   G NP V   
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G++  G  + A  ++  M + G   DL + N ++    ++G  +  +EM+  +  
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKN 574

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV +Y  ++  +S+AGM +EA +L+  +   G +     Y+ I++ +   G+ D+
Sbjct: 575 SKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAV---GKIDE 631



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 3/317 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK    +++  T + +I+  GK G V+ A  +F       C+  V+L N+L+  L +
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL--QEMSDKGFNPPV 122
                 A  L   M      P+  TY  ++ A   S K R ++ FL  ++M + G  P  
Sbjct: 348 AGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFES-KARASEAFLWYEKMKENGVVPSS 406

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ G      +E A  ++ +M ++GF      + SLI  + K+   E   E++  
Sbjct: 407 FTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQE 466

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +    +    Y ++I  + K G + EA  L + + + G  P    Y  ++ GM R G 
Sbjct: 467 LRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGM 526

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A      M+  G  P+   + +++    R G    A      M    + P    ++ 
Sbjct: 527 TDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNT 586

Query: 303 VTDGLKNCGKHDLAEKI 319
           V   L   G  + A K+
Sbjct: 587 VLGCLSRAGMFEEAAKL 603



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 106/245 (43%), Gaps = 3/245 (1%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+ F  D  TY  L++    +G + E  + +QEM              +V+ L  A  + 
Sbjct: 117 RRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVN 176

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKIL 198
            A  +  ++  +       T+NS+I  + + G  E   E+Y  +C  G C  D  TY  L
Sbjct: 177 KALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSAL 236

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  K G  D A  L   + E+G  P   +Y  I+   F+ G+ + A     EMK KG 
Sbjct: 237 IAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGC 296

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
                 YT LI   G+ G+  EA +  + M + G  P     + + + L   G+  LA+ 
Sbjct: 297 ALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGR--LADA 354

Query: 319 IELLE 323
           I+L E
Sbjct: 355 IKLFE 359


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+ +       NCQ  V++Y S++ +LC+ +    A+ L  +M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  LV+A C+  + +     L +M +    P V     +V  L   G +
Sbjct: 223 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 282

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++V+ MI++G   D+ T+ +L++  C   E++  V+++  + + G   DV +Y  L
Sbjct: 283 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 342

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ID+A  L   +      P    Y  ++ G+   G+  DA   F EM  +G 
Sbjct: 343 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQ 402

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y++L+    +     EA   L  +    L P  + ++++ DG+   G+ + A  
Sbjct: 403 MPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 462

Query: 319 I 319
           +
Sbjct: 463 L 463



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 4/314 (1%)

Query: 2   WK--TIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  T  L +  N  + P  +  S +++   K G V  A E+ +       +  V+ Y +
Sbjct: 247 WKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTT 306

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+RKGF PD  +Y  L+N +C   K+ +A    +EM  K 
Sbjct: 307 LMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 366

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           + P  +  + L+ GL + G L+ A  + ++M+ +G + DL T++ L++++CK+  +E  +
Sbjct: 367 WIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAM 426

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    L  D+  Y I+I  + +AG ++ A  L  NL   G  P    Y  +I G+
Sbjct: 427 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 486

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +RG  ++A   F EM      P+   Y  +     +    + A   L EM   G +   
Sbjct: 487 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADV 546

Query: 298 RCFDLVTDGLKNCG 311
               L+ + L + G
Sbjct: 547 STTTLLVEMLSDDG 560



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F++         +  Y SL+ ALC +  +     L+ +M+   
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 261

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD   ++ +V+A C  GK+ EA E +  M  +G  P V     L+ G      ++ A 
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + M+++GF  D+ ++ +LI   CK  +++  + ++  +C+     D  TY  L+  +
Sbjct: 322 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G + +A  L H +V  G  P    Y+ ++  + +    ++A      ++     P+ 
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            VY ++I    R G    A +    ++  GL P    ++++  GL   G  + A K+
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 498



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 136/310 (43%), Gaps = 1/310 (0%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           P T + +I      G +  A+ +F+K      Q  V+ Y +L+  LC+V     A  L+R
Sbjct: 126 PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLR 185

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
            M +    PD   Y  ++++ C   ++ EA     +M  +G +P +     LV  L N  
Sbjct: 186 SMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLC 245

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
             +    ++N+M+    + D+  F+++++ +CK G+V    E+   + + G+  DV TY 
Sbjct: 246 EWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYT 305

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+        +DEA ++   +V  G  P    Y  +I G  +  + D A   F EM  K
Sbjct: 306 TLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRK 365

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNCGKHDL 315
              P+   Y  L+      GR  +A     EM   G  P    + ++ D L KNC   + 
Sbjct: 366 EWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEA 425

Query: 316 AEKIELLEVS 325
              ++ +E S
Sbjct: 426 MALLKAIEAS 435



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 127/305 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     V  A  V  K      Q     + +L+  LC    
Sbjct: 82  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 141

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 142 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 201

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + ++M+ QG   D+ T+ SL+  +C   E +    +   +    
Sbjct: 202 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 261

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV  +  ++ A+ K G + EA  ++  +++ G +P    Y  ++ G   + + D+A 
Sbjct: 262 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   YT LI    +  +  +A     EM      P ++ ++ +  GL
Sbjct: 322 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381

Query: 308 KNCGK 312
            + G+
Sbjct: 382 CHVGR 386



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  FN+    +    ++ +  LL ++ ++K +    +L  +M   G  P+  T  I
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 96

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N++C   ++  A   L ++   G  P       L++GL   G +  A  + +KMI +G
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 156

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  ++ T+ +LI  +CK G     + +  S+ +     DV  Y  +I ++ K   + EAF
Sbjct: 157 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 216

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +V  G  P    Y  ++  +    ++       ++M      P+  +++ ++   
Sbjct: 217 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 276

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            + G+  EA   +  M + G+ P    +  + DG  +C + ++ E +++ ++ +R
Sbjct: 277 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG--HCLQSEMDEAVKVFDMMVR 329



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 36/208 (17%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  LC V     A AL   M+ +G +PD  TY+IL+++ C +  + EA   L+ + 
Sbjct: 374 YNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIE 433

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG--- 171
               NP ++  ++++ G+  AG LE+A+ + + +  +G    + T+N +I  +CK G   
Sbjct: 434 ASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLN 493

Query: 172 --------------------------------EVEFCVEMYYSVCKLGLCADVSTYKILI 199
                                           E    +++   +   G  ADVST  +L+
Sbjct: 494 EANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLV 553

Query: 200 PAVSKAGMIDEA-FRLLHNLVEDGHKPF 226
             +S  G+   + F +L  L ED  + F
Sbjct: 554 EMLSDDGLDQSSCFLMLSVLSEDDRRYF 581



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 2/189 (1%)

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           L+   L+ A    N+++       +  F  L+ +I K       + +   +   G+  +V
Sbjct: 32  LHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNV 91

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T  ILI +      +  AF +L  +++ GH+P P+ +  +I+G+   G+  +A   F +
Sbjct: 92  YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 151

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  PN   Y  LI    + G    A   L  M +    P    +  + D L  C  
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL--CKD 209

Query: 313 HDLAEKIEL 321
             + E   L
Sbjct: 210 RQVTEAFNL 218



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 66/137 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ ++  NL+   Q  ++II+   + G ++ A ++F+  ++      V  YN ++  LC+
Sbjct: 429 LKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCK 488

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             L + A  L   M      PD  TY  +   +  + +   A + L+EM  +GF+  V  
Sbjct: 489 RGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVST 548

Query: 125 RDLLVQGLLNAGYLESA 141
             LLV+ L + G  +S+
Sbjct: 549 TTLLVEMLSDDGLDQSS 565


>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 565

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 162/366 (44%), Gaps = 39/366 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+   L +S  T  LI+  + +   V  AVE F K   F  +  +  YN L+ 
Sbjct: 198 VWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLID 256

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAW---------------------- 97
            L + K    A+A+ + M R G FVPD +TY +L+  W                      
Sbjct: 257 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQ 316

Query: 98  -------------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
                        C SGK  EA +  +EM   G  P      +L+ GL +   L+ A + 
Sbjct: 317 PDVVAYGMLISSFCKSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKY 376

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
                  GF +++ T N+++   C+S + +   +M   + K G+  +  TY I++  + K
Sbjct: 377 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKSGIGPNSRTYDIILHHLIK 436

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF-RRGQFDDAFCFFSEMKIKGHPPNRP 263
           +  I+EA+ +   + +DG +P  + Y  ++ GMF    + D A   +++MK KG  P   
Sbjct: 437 SQKIEEAYNVFQGMSKDGCEPQLNTYTMMV-GMFCSNERVDVALKVWNQMKEKGVLPCMH 495

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +++ LI       R  EA  Y  EM + G+ P  + F  + + L   G+  LA+++ L  
Sbjct: 496 MFSALINGLCFENRLEEACAYFQEMLDRGIRPPGQLFSNLKEALIEGGRISLAQEMALKL 555

Query: 324 VSLRSV 329
             LR  
Sbjct: 556 DELRKT 561



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 128/281 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     V+ +      Q  V+ Y  L+ + C+      A  + R 
Sbjct: 285 KTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKVFRE 344

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ +     GF   V   + +V     +  
Sbjct: 345 METNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSK 404

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A +MV++M K G   +  T++ ++  + KS ++E    ++  + K G    ++TY +
Sbjct: 405 FQHAFKMVDEMRKSGIGPNSRTYDIILHHLIKSQKIEEAYNVFQGMSKDGCEPQLNTYTM 464

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++        +D A ++ + + E G  P   +++ +I G+    + ++A  +F EM  +G
Sbjct: 465 MVGMFCSNERVDVALKVWNQMKEKGVLPCMHMFSALINGLCFENRLEEACAYFQEMLDRG 524

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             P   +++ L      GGR   A    +++ E+  TP+ R
Sbjct: 525 IRPPGQLFSNLKEALIEGGRISLAQEMALKLDELRKTPMRR 565



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 2/171 (1%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           +QGFV   ++F++LIE + K  +      +  ++   GL +   T+++++   ++A  + 
Sbjct: 172 QQGFVYTADSFHNLIEALGKIKQFRLVWSLVEAMRCRGLLSK-DTFRLIVRRYARARKVK 230

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTML 268
           EA      +   G K   S Y  +I  + +  Q   A   F EMK  G   P+   YT+L
Sbjct: 231 EAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVL 290

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   G     +   +   EM + GL P    + ++       GK D A K+
Sbjct: 291 MEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFCKSGKCDEAIKV 341


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  121 bits (303), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 140/297 (47%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G +  A+++  +      Q   ++YN ++  +C+ KL + A+ L  +M+ K 
Sbjct: 181 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 240

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T   L+  +C  G+++EA   L +M  +  NP +    +LV      G ++ AK
Sbjct: 241 ISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAK 300

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            M+   +K+  +LD+ T+NSL++  C   E+    +++ S+   G+ A+V +Y  +I  +
Sbjct: 301 MMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGL 360

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA  L   +      P    Y  +I G+ + G+         EM  +G PPN 
Sbjct: 361 CKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNI 420

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y  ++    +     +A   L  + + G+ P    + ++  GL   GK + A+K+
Sbjct: 421 ITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKV 477



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 160/342 (46%), Gaps = 37/342 (10%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +  ++II+   K  LV++A +++++  A          NSL++  C +     A 
Sbjct: 206 VQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAV 265

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ------------------------- 107
            L+ +MI +   P   T++ILV+A+C  GK++EA+                         
Sbjct: 266 GLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGY 325

Query: 108 ----------EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                     +    M+ +G    V+    ++ GL     ++ A  +  +M  +  + ++
Sbjct: 326 CLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNV 385

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+NSLI+ + K G++   +++   +   G   ++ TY  ++ A+ K   +D+A  LL N
Sbjct: 386 VTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTN 445

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           L + G +P    Y  +IKG+ + G+ +DA   F ++ +KG+  +   YT++I      G 
Sbjct: 446 LKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGL 505

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           F  A   L +M + G  P ++ +++V   L    ++D+AEK+
Sbjct: 506 FDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKL 547



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 132/304 (43%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G +  A+   +K  A       + Y +L+  LC+V     A  L++R+
Sbjct: 142 TFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRV 201

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+   Y ++++  C +  + +A +   +M  K  +P     + L+ G    G L
Sbjct: 202 DGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQL 261

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++KMI +     + TF+ L++  CK G+V+    M     K  +  DV TY  L
Sbjct: 262 KEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSL 321

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        I++A  +  ++   G       Y  +I G+ +    D+A   F EM+ +  
Sbjct: 322 MDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKI 381

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI   G+ G+       + EM + G  P    ++ + D L  C  H + + 
Sbjct: 382 IPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDAL--CKNHHVDKA 439

Query: 319 IELL 322
           I LL
Sbjct: 440 IALL 443



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 107/225 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           ++ A ++F+   +      V  Y +++  LC++K+   A  L   M  +  +P+  TY  
Sbjct: 331 INKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNS 390

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++     GK+    + + EM D+G  P +   + ++  L    +++ A  ++  +  QG
Sbjct: 391 LIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQG 450

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+  LI+ +C+SG++E   +++  +   G   DV TY ++I      G+ D A 
Sbjct: 451 IRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAAL 510

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LL  + ++G  P    Y  +I  +F + + D A     EM  +G
Sbjct: 511 ALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARG 555



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 124/273 (45%), Gaps = 1/273 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLF 68
           P  + + P ++SL  +        +N +  FN      N    ++ +N +L +L + K  
Sbjct: 27  PNFIGLFPSSISLYSQLHHHQDEENNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHH 86

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A +L ++M   G V D  T+ IL+N +   G    +     ++  KGF+P     + L
Sbjct: 87  STALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTL 146

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G++  A    +K++ QGF LD  ++ +LI  +CK G +   +++   V    +
Sbjct: 147 IKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLV 206

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +   Y ++I  + KA ++++AF L   +V     P       +I G    GQ  +A  
Sbjct: 207 QPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVG 266

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
              +M ++   P    +++L+    + G+  EA
Sbjct: 267 LLHKMILENINPRMYTFSILVDAFCKEGKVKEA 299



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 101/205 (49%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           Q+ + +I    K  +VD AV +F +         V+ YNSL+  L ++        L+  
Sbjct: 351 QSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDE 410

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  P+  TY  +++A C +  + +A   L  + D+G  P +    +L++GL  +G 
Sbjct: 411 MHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGK 470

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE A+++   ++ +G+ LD+ T+  +I+  C  G  +  + +   +   G   +  TY+I
Sbjct: 471 LEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEI 530

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I ++ +    D A +LL  ++  G
Sbjct: 531 VILSLFEKDENDMAEKLLREMIARG 555



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 90/175 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+  GK G +   +++ ++         ++ YNS+L ALC+      A AL+  +
Sbjct: 387 TYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNL 446

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY +L+   C SGK+ +AQ+  +++  KG+N  V    +++QG    G  
Sbjct: 447 KDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLF 506

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           ++A  +++KM   G + + +T+  +I ++ +  E +   ++   +   GL  + S
Sbjct: 507 DAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKS 561



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/148 (20%), Positives = 67/148 (45%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           FN ++ ++ K+      + ++  +   G+ +D  T+ ILI   S+ G+   +F +   ++
Sbjct: 73  FNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSVFGKIL 132

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G  P    +  +IKG+  +G    A  F  ++  +G   ++  Y  LI    + GR  
Sbjct: 133 KKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRIT 192

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
            A   L  +    + P +  ++++ D +
Sbjct: 193 AALQLLKRVDGKLVQPNAVMYNMIIDNM 220


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P   T + +I   GK G    AVE+F+   A  CQ     Y +++  LC+
Sbjct: 33  LAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCK 92

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L ++M   G   +  TY+ L+++ C   ++ EA +    M  K  +P +  
Sbjct: 93  IGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFT 152

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+QGL N    + A  ++N+M     + ++ TFN L++T CK G+V     +  ++ 
Sbjct: 153 YTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMT 212

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++G+  DV TY  L+   S    + EA +L   ++  G KP    Y+ +I G  +  + D
Sbjct: 213 EMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRID 272

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+EM  +G  PN   Y  LI    + GR  EA +    M   G  P    + ++ 
Sbjct: 273 EAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILL 332

Query: 305 DGL 307
           DG 
Sbjct: 333 DGF 335



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 35/324 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    K+  V+ A+++F+   A +    +  Y SL+  LC    +  A AL+  M
Sbjct: 117 TYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------------------- 115
                +P+  T+ +LV+ +C  GK+  A+  L+ M++                       
Sbjct: 177 TSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEV 236

Query: 116 ------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       KG  P V    +L+ G   A  ++ AKQ+ N+MI QG   +  ++N+L
Sbjct: 237 VEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTL 296

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +    +++ ++   G   ++ TY IL+    K G + +AFRL   +     
Sbjct: 297 IHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYL 356

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP   +Y  ++  M + G   DA   FSE+ + G  PN  +YT +I    + G   EA  
Sbjct: 357 KPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALE 416

Query: 284 YLVEMTEMGLTPISRCFDLVTDGL 307
               M + G  P    ++++  G 
Sbjct: 417 AFRNMEDDGCPPDEFSYNVIIRGF 440



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A ++F+      C+  V  Y+ L+   C+ K    A  L   MI +G  P+  +Y  L++
Sbjct: 239 ARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIH 298

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G++REAQ+  + M   G  P +    +L+ G    GYL  A ++   M       
Sbjct: 299 GLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKP 358

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L  +N L+  +CKSG ++   E++  +  +GL  +V  Y  +I  + K G++DEA    
Sbjct: 359 NLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAF 418

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            N+ +DG  P    Y  II+G  +      A     EM+ +G
Sbjct: 419 RNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRG 460



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 134/305 (43%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G    A  +F K     CQ  V+ Y++L+ +LC+ +  + A  +   M
Sbjct: 82  TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYM 141

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P   TY  L+   C+  + +EA   L EM+     P V   ++LV      G +
Sbjct: 142 KAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKV 201

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A+ ++  M + G   D+ T+NSL+       EV    +++  +   G   DV +Y IL
Sbjct: 202 LAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSIL 261

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  IDEA +L + ++  G  P    Y  +I G+ + G+  +A   F  M   G+
Sbjct: 262 INGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGN 321

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +L+    + G   +A      M    L P    ++++ + +  C   +L + 
Sbjct: 322 LPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM--CKSGNLKDA 379

Query: 319 IELLE 323
            EL  
Sbjct: 380 RELFS 384



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 121/299 (40%), Gaps = 35/299 (11%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N L+   C+++     ++++ + I+ G  P   T+  L+N     GK  +A E   +M  
Sbjct: 14  NILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVA 73

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P       ++ GL   G    A  +  KM + G  L++ T+++LI ++CK   V  
Sbjct: 74  RGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNE 133

Query: 176 CVEMY--------------YSVCKLGLC---------------------ADVSTYKILIP 200
            ++++              Y+    GLC                      +V T+ +L+ 
Sbjct: 134 ALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVD 193

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G +  A  +L  + E G +P    Y  ++ G     +  +A   F  M  KG  P
Sbjct: 194 TFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKP 253

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   Y++LI    +  R  EA     EM   G TP +  ++ +  GL   G+   A+ +
Sbjct: 254 DVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDL 312



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 35/238 (14%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+  T  IL+N +C   ++      L +    G  P +     L+ GL   G    A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++ + M+ +G   D  T+ ++I  +CK GE      ++  + + G   +V TY  LI +
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K   ++EA  +                                   FS MK K   P 
Sbjct: 125 LCKYRRVNEALDI-----------------------------------FSYMKAKDISPT 149

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              YT LI       R+ EA+  L EMT + + P    F+++ D     GK   AE +
Sbjct: 150 IFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGV 207



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ F K G +  A  +F    +   +  +++YN L+ A+C+      A  L   +
Sbjct: 327 TYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSEL 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+ + Y  ++N  C  G + EA E  + M D G  P     +++++G L     
Sbjct: 387 FVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDE 446

Query: 139 ESAKQMVNKMIKQGFVLDLET 159
             A  ++ +M  +GF+ D  T
Sbjct: 447 SRAVHLIGEMRDRGFITDAGT 467



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 42/236 (17%)

Query: 1   MW-KTIELMKPYNLSVSPQ------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL 53
           MW + +E  K +++ ++        + S++I  + K   +D A ++FN+          +
Sbjct: 232 MWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNV 291

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL-------------------- 93
            YN+L+  LC++     A  L + M   G +P+  TYAIL                    
Sbjct: 292 SYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAM 351

Query: 94  ---------------VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                          VNA C SG +++A+E   E+   G  P V+    ++ GL   G L
Sbjct: 352 QSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLL 411

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           + A +    M   G   D  ++N +I    +  +    V +   +   G   D  T
Sbjct: 412 DEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M    L     T ++I     K G VD A E      +  C+  V+ YN LL AL
Sbjct: 136 KLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRAL 195

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                +      +  +  +G  P+  TY+IL+++ C  GK+ E+   ++ M +KG  P  
Sbjct: 196 LNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDA 255

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              D L+      G L+ A + ++ MI  GF+ D+  +N+++  +CK+G  +  VE++  
Sbjct: 256 YCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGK 315

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G   +VS+Y  ++ A+  +G    A  ++  ++  G  P    Y  +I  + R G 
Sbjct: 316 LDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGM 375

Query: 243 FDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            D+A    ++M      PN   Y T+L+ +C +  R  +A   L  M E G  P    + 
Sbjct: 376 VDEAIGLLADMLSGRFQPNIVSYKTVLLGLC-KAHRIDDAIEVLAAMIENGCQPNETTYT 434

Query: 302 LVTDGLKNCGKHDLA 316
           L+ +G+   G    A
Sbjct: 435 LLIEGIGFSGSRTQA 449



 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 2/317 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL+K  N   +  T +++IE +   G +D A+++ ++  +   +     YN +   LC+ 
Sbjct: 104 ELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKE 163

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+  +R +  +G  PD  TY IL+ A  + GK  E ++++ E+  +G  P V   
Sbjct: 164 GKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTY 223

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+  L   G +E +  +V  M ++G   D   ++ LI   C+ G+++  +E    +  
Sbjct: 224 SILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC 283

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   D+  Y  ++ A+ K G  D A  +   L E G  P  S Y  ++  ++  G    
Sbjct: 284 DGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYR 343

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    S+M  KG  P+   Y  LI+   R G   EA   L +M      P    +  V  
Sbjct: 344 ALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLL 403

Query: 306 GLKNCGKHDLAEKIELL 322
           GL  C  H + + IE+L
Sbjct: 404 GL--CKAHRIDDAIEVL 418



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 127/269 (47%), Gaps = 1/269 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+++   C+      A  ++ RM RKGF PD  T+ I++  +C  GK+  A +  +
Sbjct: 44  VFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFE 103

Query: 112 EM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           E+  D    P +    +L++  +  G ++ A +++++M+ +G   D  T+N +   +CK 
Sbjct: 104 ELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKE 163

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+V+   E   ++   G   DV TY IL+ A+   G  DE  + +  +   G +P    Y
Sbjct: 164 GKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTY 223

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           + +I  + R G+ +++      MK KG  P+   Y  LI    R G+   A  +L  M  
Sbjct: 224 SILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMIC 283

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  P    ++ +   L   G  D A +I
Sbjct: 284 DGFLPDIVNYNTIMAALCKNGNGDHAVEI 312



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 39/282 (13%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ K + PD      L+  + +S  + +A   +  +   G  P V   + ++ G   A  
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANR 59

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYK 196
           +ESAK ++++M ++GF  D+ T N +I T C  G+++  ++++  + K   C   + TY 
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF------- 249
           ILI A    G IDEA +LL  ++  G +P    Y  I +G+ + G+ D AF F       
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSR 179

Query: 250 ----------------------------FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
                                        SE+  +G  PN   Y++LI+   R G+  E+
Sbjct: 180 GCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEES 239

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            N +  M E GLTP + C+D +       GK D+A  IE L+
Sbjct: 240 VNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMA--IEFLD 279



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 78/161 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    K+G  D+AVE+F K     C   V  YN++L AL      + A  +I +M+ KG
Sbjct: 296 IMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKG 355

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++  C  G + EA   L +M    F P +     ++ GL  A  ++ A 
Sbjct: 356 IDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAI 415

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           +++  MI+ G   +  T+  LIE I  SG     +E+  S+
Sbjct: 416 EVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSL 456



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 103/214 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   L+        +I  F + G +D A+E  +          ++ YN+++ ALC+
Sbjct: 243 VKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCK 302

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P+  +Y  +++A  SSG    A   + +M  KG +P V  
Sbjct: 303 NGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVIT 362

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+  L   G ++ A  ++  M+   F  ++ ++ +++  +CK+  ++  +E+  ++ 
Sbjct: 363 YNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMI 422

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           + G   + +TY +LI  +  +G   +A  L ++L
Sbjct: 423 ENGCQPNETTYTLLIEGIGFSGSRTQAMELANSL 456


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LM+   +  S  T S++I+ +   G ++ A ++F +    N +  V +Y+S++     
Sbjct: 275 LKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRR 334

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILV------------------------------ 94
           +     A+AL   M ++  VP+  TY  L+                              
Sbjct: 335 LGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVI 394

Query: 95  -----NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                + +C  GKM EA      M  KG N  V   ++L  GL      + AK ++N M+
Sbjct: 395 FNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMV 454

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++G   ++ TF   IE  CK G +     ++  + K G   ++ TY  LI A  K   + 
Sbjct: 455 EKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVK 514

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A ++   ++  G  P    Y+ +I G    G+ D+A   F+EM++KG   N   YT +I
Sbjct: 515 QAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMI 574

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           +   + GR  EA     EM ++GL P  R F
Sbjct: 575 SGLSKEGRADEAFKLYDEMMKIGLIPDDRVF 605



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 36/349 (10%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEV 65
           +++     +  Q+L+L+I+   + G V+ A E+ ++       +  V  YN+LL A    
Sbjct: 206 MVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGR 265

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV--- 122
           K   G   +++ M ++  V    TY+IL+  + SSG + EA++  +EM +K     V   
Sbjct: 266 KDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVY 325

Query: 123 -----------------------RGRDL---------LVQGLLNAGYLESAKQMVNKMIK 150
                                    RD+         L+ G+  AG +E+A+ ++ +M  
Sbjct: 326 SSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQS 385

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G  L+L  FN+ ++  C+ G+++  + +   + K G+ ADV TY IL   + K    DE
Sbjct: 386 KGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDE 445

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +L+++VE G KP    +   I+   + G   +A   F +M+ KG  PN   Y  LI 
Sbjct: 446 AKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLID 505

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +  +  +A     EM   GL P    +  +  G    G+ D A K+
Sbjct: 506 AYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKL 554



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 105/218 (48%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++++N+ +   C       A  L   M +KG   D  TY IL N  C   +  EA+  L 
Sbjct: 392 LVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILN 451

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M +KG  P V    + ++     G L  A+++   M K+G V ++ T+N+LI+  CK  
Sbjct: 452 SMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKE 511

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V+   ++   +   GL  D+ TY  LI      G +DEA +L + +   G     + Y 
Sbjct: 512 KVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYT 571

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +I G+ + G+ D+AF  + EM   G  P+  V+T L+
Sbjct: 572 SMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 3/269 (1%)

Query: 57  SLLFALC-EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
            +LF +C + +LF     +   +  KG V ++R+  +L+ A    G++     F   M +
Sbjct: 149 DMLFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVE 208

Query: 116 KG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV 173
              F   V+   L++  L   G +E AK+++++M+ +G V  ++ T+N+L+       + 
Sbjct: 209 SNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDR 268

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +   E+   + K  +   V+TY ILI   S +G I+EA ++   + E   +    +Y+ +
Sbjct: 269 KGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSM 328

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    R G    AF  F EM  +   PN   Y  LI    + G+   A   L+EM   G+
Sbjct: 329 ISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGV 388

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELL 322
                 F+   DG    GK D A +++ +
Sbjct: 389 DLNLVIFNTTMDGYCRRGKMDEALRLQAI 417



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D A  + N       +  V+ +   +   C+      A  L R M +KG VP+  TY  L
Sbjct: 444 DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++A+C   K+++A +   EM +KG  P +     L+ G    G ++ A ++ N+M  +G 
Sbjct: 504 IDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGI 563

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++ T+ S+I  + K G  +   ++Y  + K+GL  D   +  L+ +  K
Sbjct: 564 TRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 2/308 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEF-GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           ++ +E +    +  S      II+    K+  V+ A +V     A      VL++N ++ 
Sbjct: 133 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 192

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+ K    AY L+  MI KG VP+  T+ IL+   C + ++ EAQ+ L++M   G +P
Sbjct: 193 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSP 252

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     ++ GL   G ++ A ++   M ++    ++ T N LI+ +CK+  +E   ++Y
Sbjct: 253 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 312

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFR 239
           + + + G   D+ TY  LI  + K+  +DEAF+L   + E G     ++ Y+ +  G   
Sbjct: 313 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 372

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  DA   FS +  KG  P+   YT LI    +  R VE    + EM   G  P    
Sbjct: 373 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 432

Query: 300 FDLVTDGL 307
              V  GL
Sbjct: 433 LSAVLGGL 440



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 1/298 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            +L+I  F K   +D+A ++        C   V  +  L+  LC+      A  L+ +M+
Sbjct: 187 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 246

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+  TY+ ++N  C  G++ +A E  Q M  +   P V   ++L+ GL  A  +E
Sbjct: 247 TGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 306

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL-CADVSTYKIL 198
            A+Q+ ++M + G   D+ T+NSLI+ +CKS +V+   +++ ++ + G+  A+  TY  L
Sbjct: 307 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 366

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
               +  G + +A R+   LV+ G  P  + Y  +I    +  +  +      EM  KG 
Sbjct: 367 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 426

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP     + ++     G     A      M   G T  +  ++LV +G+    KH+ A
Sbjct: 427 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKA 484



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 39/342 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I  F   G +D A+++  +  +   +   +++ +L+  LC+      A    R M
Sbjct: 11  TYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 70

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY  LV+A C +GK  EAQ  L+EM  +G  P       L+ GL   G  
Sbjct: 71  A-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSE 129

Query: 139 ESA-----------------------KQMVNK-------------MIKQGFVLDLETFNS 162
           E A                       +++ NK             +I +GF   +  FN 
Sbjct: 130 EQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNL 189

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I   CK+ +++   ++   + + G   +V T+ ILI  + KA  + EA +LL  +V  G
Sbjct: 190 VINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGG 249

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y+ +I G+ ++GQ DDA+  F  M+ +  PPN   + +LI    +  R  EA 
Sbjct: 250 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 309

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
                M E G  P    ++ + DGL  C    + E  +L + 
Sbjct: 310 QLYHRMRETGCAPDIITYNSLIDGL--CKSFQVDEAFQLFQT 349



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 156/367 (42%), Gaps = 43/367 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  +LM+  N   +  T +++I+   K   ++ A +++++     C   ++ YNSL+  
Sbjct: 274 YELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDG 333

Query: 62  LCEV---------------------------KLFHGAYALIRRM----------IRKGFV 84
           LC+                             LFHG YA + RM          + KGF 
Sbjct: 334 LCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG-YAALGRMADACRIFSMLVDKGFS 392

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  L+  +C + +  E  E ++EM+ KGF P V     ++ GL    + E A Q+
Sbjct: 393 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 452

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK---LGLCADVSTYKILIPA 201
            + M  +G   D   +N ++E + ++ +    + +   V            S    L+ +
Sbjct: 453 FDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVES 512

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + + G  D+A +LLH + E G     S Y  ++ G+ R  ++D+A   F  M   G  P 
Sbjct: 513 LCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPE 572

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI-- 319
                ++I+      +  +A   +  M+++G  P     + +  G    G+ DLA K+  
Sbjct: 573 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLE 632

Query: 320 ELLEVSL 326
           E+ E  L
Sbjct: 633 EMTEAGL 639



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 6/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    K G VD+A E+F      NC   V+ +N L+  LC+ K    A  L  RM
Sbjct: 256 TYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRM 315

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQGLLNAGY 137
              G  PD  TY  L++  C S ++ EA +  Q + + G +         L  G    G 
Sbjct: 316 RETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 375

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A ++ + ++ +GF  DL T+ SLI   CK+      VE+   +   G    V+T   
Sbjct: 376 MADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSA 435

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM---- 253
           ++  + +    + A +L  ++   G      +Y  +++GM R  + + A     ++    
Sbjct: 436 VLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKR 495

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             K +P +  V  ++ ++C + GR  +A   L +M+E G       ++ +  GL    + 
Sbjct: 496 DRKFNPSSSAVDALVESLC-QVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRW 554

Query: 314 DLAEKI 319
           D A ++
Sbjct: 555 DEATQV 560



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 3/211 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            TLS ++    +    + A+++F+   A  C    L+YN ++  +      + A A++ +
Sbjct: 431 NTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQ 490

Query: 78  MIRK---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +I K    F P       LV + C  G+  +A++ L +MS++GF   V   + L+ GL  
Sbjct: 491 VIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSR 550

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
               + A Q+   M+  G   ++ T N +I  +C + +V+   E+   + KLG C D+ T
Sbjct: 551 LQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIET 610

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
              LI    K+G  D A +LL  + E G +P
Sbjct: 611 CNTLIGGYCKSGRADLARKLLEEMTEAGLEP 641



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 117/277 (42%), Gaps = 38/277 (13%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           +P+K TY IL+  + S+G +  A + L+EM   GF         L++GL +AG +  A +
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
               M K     D+ T+ +L+  +CK+G+ +    M   +   G   D  T+  LI  + 
Sbjct: 66  HFRAMAKD-CAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 204 KAGMIDEAFRLLHNLVE------------------------------------DGHKPFP 227
           K G  ++AFR+L ++++                                     G  P  
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTV 184

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            ++  +I G  +    D A+     M  KG  PN   +T+LIT   +  R  EA   L +
Sbjct: 185 LMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEK 244

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIELLE 323
           M   G +P    +  V +GL   G+ D A E  +L+E
Sbjct: 245 MVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLME 281



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 67  LFHG-----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK---GF 118
           LF G     A  L   M  +G   D   Y ++V     + K  +A   L+++ DK    F
Sbjct: 440 LFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKF 499

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NP     D LV+ L   G  + AKQ+++KM ++GF   + ++N L+  + +    +   +
Sbjct: 500 NPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQ 559

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++ ++   G   ++ST  ++I  +  A  +D+A+ L+  + + G  P       +I G  
Sbjct: 560 VFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYC 619

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + G+ D A     EM   G  PN   + +L
Sbjct: 620 KSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S   +  ++E   + G  D+A ++ +K +       V  YN LL  L  ++ +  A  + 
Sbjct: 502 SSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVF 561

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+  G  P+  T  ++++  CS+ K+ +A E +Q MS  G  P +   + L+ G   +
Sbjct: 562 EAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKS 621

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           G  + A++++ +M + G   + +T + L+E
Sbjct: 622 GRADLARKLLEEMTEAGLEPN-DTTHDLLE 650


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 35/334 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK           + I++   K  LV+ AV +F K         V+ Y SL+  L
Sbjct: 217 KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +  +  A+ L+  M     +PD   +++L++  C  G++ EA+  L+ M++ G  P V
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDV 336

Query: 123 ----------------------------RGR-------DLLVQGLLNAGYLESAKQMVNK 147
                                       +GR        +LV G   A  ++ AKQ+ ++
Sbjct: 337 ATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDE 396

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M  +G + D  ++N+LI  +C++       E++  +   G   ++ TY IL+  +SK G 
Sbjct: 397 MTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGY 456

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +D+A  L   +   G KP    Y  +I GM + G+F DA   F+E+ +KG  PN  V T 
Sbjct: 457 LDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTP 516

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            I    +GG   EA     +M +   +P   C +
Sbjct: 517 TIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCIN 550



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 139/302 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            + S+II+   + G     +++        C+  V++YN+++  LC+ +L + A  +  +
Sbjct: 197 HSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCK 256

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P   TY  L++   + G+ +EA   L EM      P +    +L+  +   G 
Sbjct: 257 MKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGE 316

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A+ ++  M + G   D+ T+N+L+   C   EV    +++  +   G   DV ++ I
Sbjct: 317 VSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSI 376

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    KA  IDEA +L   +   G  P    Y  +I G+ +  +  +A   F +M   G
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNG 436

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           +PPN   Y++L+    + G   +A      M   GL P    ++++ DG+   GK   A 
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDAR 496

Query: 318 KI 319
           ++
Sbjct: 497 EL 498



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 115/268 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           VL    L+   C +      ++++ ++I+ G  P+  T++ L+N +C  GK+  A E   
Sbjct: 126 VLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFD 185

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G+ P V    ++++GL   G      +++  M   G   D+  +N++++ +CK  
Sbjct: 186 VMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDR 245

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   V ++  +   G+   V TY  LI  +   G   EAF LL+ +      P    ++
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFS 305

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  M + G+  +A      M   G  P+   Y  L+         VEA      M   
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    F ++ +G     + D A+++
Sbjct: 366 GRMPDVFSFSILVNGYCKAKRIDEAKQL 393



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 35/273 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A+  FN     N    ++ +  L  AL  +K +    +L ++M   G   D  +  I
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C    +           D GF+                        ++ K+IK G
Sbjct: 132 LINCFCRLCHV-----------DYGFS------------------------VLGKIIKLG 156

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ TF++LI   C  G++   +E++  +   G   +V +Y I+I  + + G   E  
Sbjct: 157 LEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVI 216

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +LL ++   G +P   +Y  I+  + +    ++A   F +MK  G  P    YT LI   
Sbjct: 217 KLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
              GR+ EA   L EM    + P    F ++ D
Sbjct: 277 RNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID 309



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 10/224 (4%)

Query: 99  SSGKMREAQEFLQEMSD--KGFNPPVRGRDL--------LVQGLLNAGYLESAKQMVNKM 148
           SS   R      + ++D    FN  V    L        L   L+   + ++   +  +M
Sbjct: 58  SSSSYRHKNRTFRNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQM 117

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   D+ +   LI   C+   V++   +   + KLGL  +V T+  LI      G I
Sbjct: 118 EMAGISHDVLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKI 177

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             A  L   +V  G+KP    Y+ IIKG+ R G+  +       MK+ G  P+  +Y  +
Sbjct: 178 GRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTI 237

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +    +     EA +   +M   G+ P    +  +  GL+N G+
Sbjct: 238 VDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGR 281


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 127/256 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+++++++ ALC+      A+ ++  MI +G  P+  TY  L++  C   +M EA +   
Sbjct: 277 VVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFD 336

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G+ P V   + L+ G      ++ A  +  +M ++  + +  T+N+L+  +C  G
Sbjct: 337 TMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVG 396

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  + +++ +   G   D++TY+IL+  + K   +DEA  LL  +      P   +Y 
Sbjct: 397 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYT 456

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I GM R G+ + A   FS +  KG  PN   YT++I    R G   EA    +EM   
Sbjct: 457 IVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 516

Query: 292 GLTPISRCFDLVTDGL 307
           G +P    ++ +T GL
Sbjct: 517 GCSPDGCTYNTITQGL 532



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 136/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F+K         +  Y SL+ +LC +  +     L+ +MI   
Sbjct: 213 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 272

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD   ++ +V+A C  GK+ EA + +  M  +G  P V   + L+ G      ++ A 
Sbjct: 273 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + M+  G+  ++ ++N+LI   CK   ++    ++  +C+  L  +  TY  L+  +
Sbjct: 333 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G + +A  L H +V  G  P  + Y  ++  + ++   D+A      ++     P+ 
Sbjct: 393 CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDI 452

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +YT++I    R G    A +    ++  GL P  R + ++ +GL   G  D A K+
Sbjct: 453 QIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 509



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 133/297 (44%), Gaps = 4/297 (1%)

Query: 2   WK--TIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  T  L +  N  + P  +  S +++   K G +  A +V +       +  V+ YN+
Sbjct: 258 WKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNA 317

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+  G+ P+  +Y  L+N +C   +M +A    +EM  K 
Sbjct: 318 LMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE 377

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     + L+ GL + G L+ A  + ++M+  G + DL T+  L++ +CK   ++  +
Sbjct: 378 LIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAM 437

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    +  D+  Y I+I  + +AG ++ A  +  NL   G +P    Y  +I G+
Sbjct: 438 ALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGL 497

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            RRG  D+A   F EM   G  P+   Y  +     +    + A   L EM   G +
Sbjct: 498 CRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 554



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G  + A+ +       NCQ  V++Y S++ +LC+ +    A+ L  +M
Sbjct: 174 TYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKM 233

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  L+++ C+  + +     L +M +    P V     +V  L   G +
Sbjct: 234 VGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKI 293

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V+ MI +G   ++ T+N+L++  C   E++  V+++ ++   G   +V +Y  L
Sbjct: 294 TEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTL 353

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D+A  L   + +    P    Y  ++ G+   G+  DA   F EM   G 
Sbjct: 354 INGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQ 413

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +L+    +     EA   L  +    + P  + + +V DG+   G+ + A  
Sbjct: 414 IPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARD 473

Query: 319 I 319
           I
Sbjct: 474 I 474



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 4/320 (1%)

Query: 7   LMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L + P T   + +I      G + +A+ +F+K      Q  V+ Y +L+  LC+
Sbjct: 125 LAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCK 184

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V   + A  L+R M +    PD   Y  ++++ C   ++ EA     +M  +G +P +  
Sbjct: 185 VGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFT 244

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+  L N    +    ++N+MI    + D+  F+++++ +CK G++    ++   + 
Sbjct: 245 YTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMI 304

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  +V TY  L+        +DEA ++   +V +G+ P    Y  +I G  +  + D
Sbjct: 305 IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMD 364

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  K   PN   Y  L+      GR  +A     EM   G  P    + ++ 
Sbjct: 365 KATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILL 424

Query: 305 DGLKNCGKHDLAEKIELLEV 324
           D L  C K  L E + LL+ 
Sbjct: 425 DYL--CKKSHLDEAMALLKT 442



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 116/239 (48%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D AV+VF+          V+ YN+L+   C+++    A  L   M +K  +P+  TY  
Sbjct: 328 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 387

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C  G++++A     EM   G  P +    +L+  L    +L+ A  ++  +    
Sbjct: 388 LMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 447

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D++ +  +I+ +C++GE+E   +++ ++   GL  +V TY I+I  + + G++DEA 
Sbjct: 448 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 507

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +L   +  +G  P    Y  I +G+ +  +   A     EM  +G   +    T+L+ M
Sbjct: 508 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 566



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 125/305 (40%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +     TL+++I  F        A  V  K      Q     + +L+  LC    
Sbjct: 93  MDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGK 152

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 153 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 212

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + +KM+ QG   D+ T+ SLI ++C   E +    +   +    
Sbjct: 213 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 272

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV  +  ++ A+ K G I EA  ++  ++  G +P    Y  ++ G   + + D+A 
Sbjct: 273 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G+ PN   Y  LI    +  R  +A     EM +  L P +  ++ +  GL
Sbjct: 333 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGL 392

Query: 308 KNCGK 312
            + G+
Sbjct: 393 CHVGR 397



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 6/316 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           LS+ P   SL    F    L    +D+A+  FN+    +     + +N LL ++ + K +
Sbjct: 24  LSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQY 83

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
              ++L  +M   G  PD  T  IL+N++C   +   A   L ++   G  P       L
Sbjct: 84  PTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTL 143

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G +  A  + +KMI +GF  ++ T+ +LI  +CK G     + +  S+ +   
Sbjct: 144 IRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNC 203

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV  Y  +I ++ K   + EAF L   +V  G  P    Y  +I  +    ++     
Sbjct: 204 QPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT 263

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             ++M      P+  +++ ++    + G+  EA + +  M   G+ P    ++ + DG  
Sbjct: 264 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDG-- 321

Query: 309 NCGKHDLAEKIELLEV 324
           +C + ++ E +++ + 
Sbjct: 322 HCLQSEMDEAVKVFDT 337



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 91/190 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G + +A+ +F++  A      +  Y  LL  LC+      A AL++ +      PD + Y
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 455

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++  C +G++  A++    +S KG  P VR   +++ GL   G L+ A ++  +M  
Sbjct: 456 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 515

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+N++ + + ++ E    +++   +   G  ADVST  +L+  +    +   
Sbjct: 516 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQS 575

Query: 211 AFRLLHNLVE 220
             ++L   V+
Sbjct: 576 VKQILSEFVQ 585



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 68/150 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K   +D A+ +       N    + +Y  ++  +C       A  +   +
Sbjct: 419 TYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL 478

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+ RTY I++N  C  G + EA +   EM   G +P     + + QGLL     
Sbjct: 479 SSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEA 538

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             A Q++ +M+ +GF  D+ T   L+E +C
Sbjct: 539 LRAIQLLQEMLARGFSADVSTTTLLVEMLC 568



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + KTIE     N+    Q  +++I+   + G ++ A ++F+  ++   +  V  Y  ++ 
Sbjct: 439 LLKTIE---GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMIN 495

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC   L   A  L   M   G  PD  TY  +      + +   A + LQEM  +GF+ 
Sbjct: 496 GLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSA 555

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            V    LLV+ L +    +S KQ++++ ++
Sbjct: 556 DVSTTTLLVEMLCDDKLDQSVKQILSEFVQ 585


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 4/284 (1%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP   S  ++I+   + G +  A+E+  + T F C    +  N L+  LC VK  +  + 
Sbjct: 79  SPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHE 138

Query: 74  LIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++RR+ R G  +P+  TY  +++ +C +G+M++A     +M   G  P     ++L+ G 
Sbjct: 139 VLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGY 198

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             A  +ESA +M  ++I      D+ TFNSLI+  C+ G+++  + ++  + +  +  +V
Sbjct: 199 GKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNV 258

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            T+ I+I ++       EA  LL  L +     P   +Y PII  + + G+ D+A    +
Sbjct: 259 YTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVT 318

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +M+ KG  P++  YT+LI      GR  EA     +M E G  P
Sbjct: 319 DMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRP 362



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 136/292 (46%), Gaps = 3/292 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG-FVPDKRT 89
           GL+D A  +  K + F C+     YN+LL  L        A AL    I+ G + PD  +
Sbjct: 25  GLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWS 84

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +++   C  G +++A E ++ M++ G +P    +++LV GL     +    +++ ++ 
Sbjct: 85  FNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQ 144

Query: 150 KQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + G  + ++ T+ S+I   CK+G ++    +Y  + + G   +  TY +LI    KA  +
Sbjct: 145 RDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDM 204

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A R+   L+     P    +  +I G  R GQ DDA   + EM      PN   ++++
Sbjct: 205 ESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSII 264

Query: 269 ITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I       R  EA + L E+     + P +  ++ + D L   GK D A  I
Sbjct: 265 IHSLCTQNRSAEALSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLI 316



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           Y  L+N   + G+ ++A    +     G ++P V   +++++G+   G L+ A ++V +M
Sbjct: 49  YNNLLNTLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERM 108

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAGM 207
            + G   D  T N L++ +C+  +V    E+   + + G+C  +V TY  +I    KAG 
Sbjct: 109 TEFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGR 168

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +AF + +++++ G +P    Y  +I G  +    + A   + ++ +   PP+   +  
Sbjct: 169 MKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNS 228

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSL 326
           LI    R G+  +A    +EM +  + P    F ++   L  C ++  AE + LL E+++
Sbjct: 229 LIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSL--CTQNRSAEALSLLRELNM 286

Query: 327 RS 328
           R+
Sbjct: 287 RA 288



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 98/247 (39%), Gaps = 38/247 (15%)

Query: 113 MSDK-GFNPPVRGRDLLVQGLLNAGYLESA-------------------KQMVNKMIKQG 152
           M+D+ G+ P       +     NAG L++A                     ++N +I  G
Sbjct: 1   MTDQSGYVPDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHG 60

Query: 153 -----------------FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
                            +  D+ +FN +I+ +C+ G ++  +E+   + + G   D  T 
Sbjct: 61  RAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQ 120

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            IL+  + +   +++   +L  L  DG   P    Y  +I G  + G+  DAF  +++M 
Sbjct: 121 NILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDML 180

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  PN   Y +LI   G+      A     ++      P    F+ + DG   CG+ D
Sbjct: 181 QSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLD 240

Query: 315 LAEKIEL 321
            A +I +
Sbjct: 241 DAMRIWM 247



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + + G +D+A+ ++ +    + Q  V  ++ ++ +LC       A +L+R +
Sbjct: 225 TFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLREL 284

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R   VP    Y  +++  C  GK+ EA   + +M +KG +P      +L+ G    G 
Sbjct: 285 NMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGR 344

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A  + +KM++ G   D  T NS I  + K+G
Sbjct: 345 IPEAVTLFHKMVETGCRPDNITINSFISCVLKAG 378



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 42/94 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +YN ++  LC+      A  ++  M  KG  PDK TY IL+   C  G++ EA     
Sbjct: 294 TFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFH 353

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           +M + G  P     +  +  +L AG      Q++
Sbjct: 354 KMVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 138/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I+   K   ++ A  +F       C    + ++SL+  L +      AY+L  +M
Sbjct: 441 TVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKM 500

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G VP    Y  L+ ++   G+  +  +  +EM   G +P +   +  +  +  AG  
Sbjct: 501 LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGET 560

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +  ++   GF+ D  +++ LI  + K+G      E++Y++ + G   D   Y  +
Sbjct: 561 EKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 620

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+G +++A++LL  +   GH P    Y  +I G+ +  + D+A+  F E K  G 
Sbjct: 621 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 680

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             N  VY+ LI   G+ GR  EA   + E+ + GLTP    ++ + D L
Sbjct: 681 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 729



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 124/258 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  L +  L +  Y L   M  +G V D   Y  +++ +C SGK+ +A + L+EM 
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 641

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V     ++ GL     L+ A  +  +    G  L++  ++SLI+   K G ++
Sbjct: 642 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 701

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+ A+ KA  I+EA     ++ +    P    Y+ +I
Sbjct: 702 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 761

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R  +F+ AF F+ EM+  G  PN   YT +I+   + G  +EA+         G  
Sbjct: 762 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 821

Query: 295 PISRCFDLVTDGLKNCGK 312
           P S  ++ + +GL +  K
Sbjct: 822 PDSASYNAMIEGLSSANK 839



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 35/328 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+  GK G VD+A  ++ K          ++Y SL+ +  +       + + + M
Sbjct: 476 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 535

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD       ++    +G+  + +   +E++  GF P  R   +L+ GL+ AG  
Sbjct: 536 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 595

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++   M +QG VLD   +N++I+  CKSG+V    ++   +   G    V TY  +
Sbjct: 596 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 655

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K   +DEA+ L      +G K    +Y+ +I G  + G+ D+A+    E+  KG 
Sbjct: 656 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 715

Query: 259 -----------------------------------PPNRPVYTMLITMCGRGGRFVEAAN 283
                                              PPN+  Y++LI    R  +F +A  
Sbjct: 716 TPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 775

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +  EM ++GL P +  +  +  GL   G
Sbjct: 776 FWQEMQKLGLKPNTITYTTMISGLAKAG 803



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 1/310 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    MK + L     T + +I    K   +D AVE+F +        C   YN+++  
Sbjct: 285 WKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMG 344

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY L+ R   KG +P    Y  ++       ++ EA    +EM      P 
Sbjct: 345 YGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAV-PN 403

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   ++L+  L   G L +A ++ + M + G   ++ T N +I+ +CK+ ++E    ++ 
Sbjct: 404 VPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFE 463

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       +  T+  LI  + K G +D+A+ L   +++ GH P   +Y  +I+  F+ G
Sbjct: 464 GMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCG 523

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +D    + EM   G  P+  +    +    + G   +      E+   G  P +R + 
Sbjct: 524 RKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYS 583

Query: 302 LVTDGLKNCG 311
           ++  GL   G
Sbjct: 584 ILIHGLVKAG 593



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 131/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   + G ++ A+E+ +          VL  N ++  LC+ +    A ++   M
Sbjct: 406 TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM 465

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ L++     G++ +A    ++M D G  P       L++     G  
Sbjct: 466 DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRK 525

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M+  G   DL   N+ ++ + K+GE E    ++  +   G   D  +Y IL
Sbjct: 526 EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSIL 585

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG+ +E + L + + E G       Y  +I G  + G+ + A+    EMK+KGH
Sbjct: 586 IHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH 645

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP    Y  +I    +  R  EA     E    G+      +  + DG    G+ D A
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEA 703



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  +L       ++ I+ FGK G VD + + F++  +       + Y S++  LC+
Sbjct: 253 LDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L  ++ +   VP    Y  ++  + S+GK  EA   L+    KG  P V  
Sbjct: 313 ANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIA 372

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L     +E A ++  +M K+  V ++ T+N LI+ +C+ G++   +E+   + 
Sbjct: 373 YNCILTCLGKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAALEIRDDME 431

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  +V T  I+I  + KA  ++EA  +   + +    P    ++ +I G+ + G+ D
Sbjct: 432 RAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVD 491

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DA+  + +M   GH P   VYT LI    + GR  +      EM   G +P
Sbjct: 492 DAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSP 542



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 6/267 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYAL 74
           ++ S++I    K GL +   E+F    A   Q CVL    YN+++   C+    + AY L
Sbjct: 580 RSYSILIHGLVKAGLANETYELF---YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 636

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M  KG  P   TY  +++      ++ EA    +E    G    V     L+ G   
Sbjct: 637 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 696

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G ++ A  ++ +++++G   ++ T+N L++ + K+ E+   +  + S+  L    +  T
Sbjct: 697 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 756

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ILI  + +    ++AF     + + G KP    Y  +I G+ + G   +A   FS  K
Sbjct: 757 YSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 816

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEA 281
             G  P+   Y  +I       + ++A
Sbjct: 817 ANGGIPDSASYNAMIEGLSSANKAMDA 843



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 99/246 (40%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
            C   YNSLL  +     F     ++  M   GF P       LV     S K+REA + 
Sbjct: 123 HCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDI 182

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +Q M    F P      +L+  L      +    + ++M + G+ +++  F +LI    +
Sbjct: 183 IQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAR 242

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G V+  + +   +    L AD+  Y + I    KAG +D +++  H +   G  P    
Sbjct: 243 EGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVT 302

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I  + +  + D+A   F +++     P    Y  +I   G  G+F EA   L    
Sbjct: 303 YTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQK 362

Query: 290 EMGLTP 295
             G  P
Sbjct: 363 AKGSIP 368



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 119/288 (41%), Gaps = 3/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A ++      F  +     Y  L+ AL EV+       L  +M   G+  +   +  L+ 
Sbjct: 179 AFDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIR 238

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G++  A   L EM     +  +   ++ +     AG ++ + +  ++M   G + 
Sbjct: 239 VFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMP 298

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+ S+I  +CK+  ++  VE++  + +         Y  +I     AG  DEA+ LL
Sbjct: 299 DDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLL 358

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
                 G  P    Y  I+  + ++ + ++A   F EMK +   PN P Y +LI M  R 
Sbjct: 359 ERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK-RDAVPNVPTYNILIDMLCRE 417

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+   A     +M   GL P     +++ D L  C    L E   + E
Sbjct: 418 GKLNAALEIRDDMERAGLFPNVLTVNIMIDRL--CKAQKLEEACSIFE 463



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 90/210 (42%)

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +  L+EMS  GF P       LV   + +  L  A  ++  M K  F      +  LI  
Sbjct: 145 ERILEEMSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGA 204

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           + +  E +  + +++ + +LG   +V  +  LI   ++ G +D A  LL  +  +     
Sbjct: 205 LSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDAD 264

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             LY   I    + G+ D ++ FF EMK  G  P+   YT +I +  +  R  EA     
Sbjct: 265 IVLYNVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFE 324

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           ++ +    P +  ++ +  G  + GK D A
Sbjct: 325 QLEQNRKVPCAYAYNTMIMGYGSAGKFDEA 354



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   + ++    S +I+ FGK G +D A  +  +         V  +N LL AL + 
Sbjct: 673 EEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 732

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +  + A    + M      P++ TY+IL+N  C   K  +A  F QEM   G  P     
Sbjct: 733 EEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 792

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL  AG +  A  + ++    G + D  ++N++IE +  + +      ++     
Sbjct: 793 TTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRL 852

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEA 211
            G      T  +L+ A+ KA  +++A
Sbjct: 853 KGCNIHTKTCVVLLDALHKAECLEQA 878



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 93/215 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 634 YQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDG 693

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  +++KG  P+  T+  L++A   + ++ EA    Q M D    P 
Sbjct: 694 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPN 753

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M K G   +  T+ ++I  + K+G +     ++ 
Sbjct: 754 QITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFS 813

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D ++Y  +I  +S A    +A+ L  
Sbjct: 814 RFKANGGIPDSASYNAMIEGLSSANKAMDAYALFE 848


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A   F++  +  C   V+ Y +LL A  + K 
Sbjct: 478 MKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQ 537

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-------- 119
              A+ +  RM+     P+  TY+ L++  C +G++++A E  +++     N        
Sbjct: 538 LIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFE 597

Query: 120 --------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
                   P V     L+ GL  A  +  A ++++ M+  G   +   +++LI+  CK G
Sbjct: 598 GNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIG 657

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI  + K G +D A ++L  ++ D   P    Y 
Sbjct: 658 KIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYT 717

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G+ + A    S M+ KG  PN   YT LI   G+ G+   +     +M   
Sbjct: 718 AMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSK 777

Query: 292 GLTP 295
           G  P
Sbjct: 778 GCAP 781



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 133/311 (42%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           EE     L+D   +V+ +  A +C    +   +    LC V  F  A+ +++ M+RKGFV
Sbjct: 390 EELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFV 449

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  ++   C + K+ ++    QEM   G NP V    +L+     AG +E A+  
Sbjct: 450 PDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSW 509

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            ++M   G   ++ T+ +L+    KS ++    ++++ +       +  TY  LI  + K
Sbjct: 510 FDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCK 569

Query: 205 AGMIDEAFRLLHNLVEDGHK----------------PFPSLYAPIIKGMFRRGQFDDAFC 248
           AG I +A  +   L+                     P    Y  +I G+ +  +  DA  
Sbjct: 570 AGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHE 629

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN+ VY  LI    + G+   A    + MT+ G  P    +  + D + 
Sbjct: 630 LLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMF 689

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 690 KDGRLDLAMKV 700



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 20/325 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC--TAFNCQQ---------C-----VLLYNSLLFAL 62
           T S +I+   K G +  A EV+ K   T+ N +          C     V+ Y +L+  L
Sbjct: 559 TYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGL 618

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +    A+ L+  M+  G  P++  Y  L++ +C  GK+  AQE    M+  G+ P V
Sbjct: 619 CKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSV 678

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+  +   G L+ A +++++M+      ++ T+ ++I+ + K GE+E  + +   
Sbjct: 679 HTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSL 738

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G   +V TY  LI  + K G  D + +L   +   G  P    Y  +I      G 
Sbjct: 739 MEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGL 798

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A     EMK    P +   Y   +   G   +F+ +   L EM      PI+  + +
Sbjct: 799 LDEAHLLLDEMKHTHWPKHLQGYHCAVQ--GFSKKFIASLGLLEEMESHETVPIAPVYGM 856

Query: 303 VTDGLKNCGKHDLAEKI--ELLEVS 325
           + D     G+ + A ++  EL+EVS
Sbjct: 857 LIDSFSKAGRLETALELHKELVEVS 881



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 120/266 (45%), Gaps = 23/266 (8%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I+   K G +D A++V ++    +C   V+ Y +++  L +V     A  L+
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLL 736

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P+  TY  L++    +GK   + +  ++M+ KG  P      +L+     A
Sbjct: 737 SLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAA 796

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST- 194
           G L+ A  ++++M    +   L+ ++  ++   K             +  LGL  ++ + 
Sbjct: 797 GLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKK-----------FIASLGLLEEMESH 845

Query: 195 --------YKILIPAVSKAGMIDEAFRLLHNLVEDGHK---PFPSLYAPIIKGMFRRGQF 243
                   Y +LI + SKAG ++ A  L   LVE           +YA +I+ +    Q 
Sbjct: 846 ETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQV 905

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLI 269
           ++AF  ++EM  KG  P+  V+  L+
Sbjct: 906 EEAFTLYTEMTRKGIVPDLIVFVSLV 931



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/349 (20%), Positives = 123/349 (35%), Gaps = 73/349 (20%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L++++    +HGL D A+E   +   F  +   + YN+L+  L         + + + M 
Sbjct: 172 LNVLVRRCCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMS 231

Query: 80  RKGFVPDKRTYAILVNAWCSSGK--------------------------------MREAQ 107
             GF  D+ T      A C  G+                                  EA 
Sbjct: 232 ASGFCMDRSTIGYFAQALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAM 291

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            FL  M      P V     L+ G L        K+++N M+ +G   +   FNSL+   
Sbjct: 292 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGY 351

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV------------------------- 202
           C +G+  +  +++  +   G       Y I I ++                         
Sbjct: 352 CNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAA 411

Query: 203 ----------------SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                              G  ++AF++L  ++  G  P  S Y  +I  + +  + + +
Sbjct: 412 SCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKS 471

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           F  F EMK  G  P+   YT+LI    + G   +A ++  EM  +G +P
Sbjct: 472 FLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSP 520



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 114/241 (47%), Gaps = 7/241 (2%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N S +P   T + +I+   K G ++ A+ + +      C   V+ Y +L+  L +     
Sbjct: 706 NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            +  L ++M  KG  P+  TY +L+N  C++G + EA   L EM    +   ++G    V
Sbjct: 766 ASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAV 825

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           QG   +    ++  ++ +M     V     +  LI++  K+G +E  +E++  + ++   
Sbjct: 826 QGF--SKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSS 883

Query: 190 ADVST---YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            ++++   Y  LI A+  A  ++EAF L   +   G  P   ++  ++KG+    ++D+A
Sbjct: 884 LNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEA 943

Query: 247 F 247
            
Sbjct: 944 L 944



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 37/251 (14%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           AL E+  F        R++R+    D+    R   +LV   C  G   EA E L  + D 
Sbjct: 139 ALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEELGRLKDF 198

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG----- 171
           G+ P     + LVQ L +AG +E   ++  +M   GF +D  T     + +CK G     
Sbjct: 199 GYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRWADA 258

Query: 172 -----------EVEFCVEMYYSVCKLGL----------------CADVSTYKILIPAVSK 204
                      +   C +M   + +  L                  +V TY+ L+    K
Sbjct: 259 LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 318

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
                   R+++ ++ +G  P PSL+  ++ G    G +  A+  F+ M   G PP    
Sbjct: 319 KKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVA 378

Query: 265 YTMLI-TMCGR 274
           Y + I ++CG+
Sbjct: 379 YNIFIGSICGQ 389



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 36/220 (16%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+    S +  T + +I+  GK G  D ++++F +  +  C    + Y  L+   C 
Sbjct: 736 LSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCA 795

Query: 65  VKLFHGAYALIRRMIR--------------KGF-------------------VPDKRTYA 91
             L   A+ L+  M                +GF                   VP    Y 
Sbjct: 796 AGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYG 855

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL---LVQGLLNAGYLESAKQMVNKM 148
           +L++++  +G++  A E  +E+ +   +  +    +   L+Q L  A  +E A  +  +M
Sbjct: 856 MLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEM 915

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
            ++G V DL  F SL++ + +  + +  +++ Y  C  G+
Sbjct: 916 TRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGV 955



 Score = 41.2 bits (95), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ---QCVLLYNSLLFA 61
           +E M+ +          ++I+ F K G ++ A+E+  +    +         +Y SL+ A
Sbjct: 839 LEEMESHETVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQA 898

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           LC       A+ L   M RKG VPD   +  LV       K  EA +       +G N
Sbjct: 899 LCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGVN 956


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 159/344 (46%), Gaps = 36/344 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  LV +A  ++++         V+ ++SL++  C V  F  A+ L   M+ 
Sbjct: 197 STIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVM 256

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   PD  T+ ILV+A C  GK++EA+  +  M  +G  P V   + L+ G      +  
Sbjct: 257 KNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGK 316

Query: 141 AKQ-------------------MVN-----KMIKQGFVLDLE-----------TFNSLIE 165
           AK                    M+N     KM+ +   L  E           T+NSLI+
Sbjct: 317 AKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLID 376

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK+G + +  E+   +    + AD+ TY  LI    K   +D+A  L+  + E G +P
Sbjct: 377 GLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQP 436

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I G+ + GQ  +A   F ++ IKG+  N   Y ++I    + G F EA   L
Sbjct: 437 NMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLL 496

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            +M + G+ P +  ++ +   L +  +++ A+K+ L E+ ++ V
Sbjct: 497 SKMEDNGIIPDAVTYETIIQALFHKDENEKAQKL-LREMVIKGV 539



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I    K G    A++V  +         V++Y++++  LC+ KL   AY L   M
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P   T++ L+  +C  GK ++A     EM  K  NP     ++LV  L   G +
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK ++  M+K+G    + T+N+L++  C   EV     +   + ++ +  +  +Y I+
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIM 339

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  M+DEA  L H +   G  P    Y  +I G+ + G+   A+    EM     
Sbjct: 340 INGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCI 399

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           P +   Y  LI +  +     +A   + ++ E G+ P    ++++ DGL   G+   A+ 
Sbjct: 400 PADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQD 459

Query: 319 I 319
           +
Sbjct: 460 V 460



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 129/282 (45%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++    T +++++   K G +  A  V         +  V+ YN+L+   C V     A
Sbjct: 258 NINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKA 317

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++  + R    P+ R+Y I++N +C    + EA     EM  +G  P     + L+ G
Sbjct: 318 KHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDG 377

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AG +  A ++V++M       D+ T+NSLI+  CK+  V+  + +   + + G+  +
Sbjct: 378 LCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPN 437

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY ILI  + K G +  A  +  +L+  G+      Y  +I G+ + G FD+A    S
Sbjct: 438 MCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLS 497

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +M+  G  P+   Y  +I          +A   L EM   G+
Sbjct: 498 KMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGV 539



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 124/276 (44%), Gaps = 15/276 (5%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALIRRMIRKGFVPDKRTY 90
           +VDNAV  FN+         ++ +N +L  L + K  +    +L  +M  KG  PD  T 
Sbjct: 46  VVDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTL 105

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +IL+N +C  G+M  A     +              +L  GL   G +  A    + ++ 
Sbjct: 106 SILINCYCHLGQMTFAFSVFAK--------------ILKMGLCLNGKVNEALLFHDHVLA 151

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            GF L+  T+  LI  +CK G+    +++   +    +  +V  Y  +I  + K  ++ +
Sbjct: 152 LGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTD 211

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A+ L   ++     P    ++ +I G    G+F DAF  F+EM +K   P+   + +L+ 
Sbjct: 212 AYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVD 271

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              + G+  EA N +  M + G+ P    ++ + DG
Sbjct: 272 ALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 109/259 (42%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           +G V+ A+   +   A       + Y  L+  LC++     A  ++R++  K    +   
Sbjct: 136 NGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVM 195

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y+ +++  C    + +A     EM  K   P V     L+ G    G  + A ++ N+M+
Sbjct: 196 YSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMV 255

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +    D  TFN L++ +CK G+++    +   + K G+   V TY  L+        + 
Sbjct: 256 MKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVG 315

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A  +L  +      P    Y  +I G  +    D+A C F EM  +G  P++  Y  LI
Sbjct: 316 KAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLI 375

Query: 270 TMCGRGGRFVEAANYLVEM 288
               + GR   A   + EM
Sbjct: 376 DGLCKAGRIPYAWELVDEM 394



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 74/154 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M    +     T + +I+ F K+  VD A+ +  K      Q  +  YN L+  
Sbjct: 388 WELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDG 447

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + ++ KG+  +  TY I++N  C  G   EA+  L +M D G  P 
Sbjct: 448 LCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPD 507

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               + ++Q L +    E A++++ +M+ +G V+
Sbjct: 508 AVTYETIIQALFHKDENEKAQKLLREMVIKGVVV 541


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 145/327 (44%), Gaps = 29/327 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K   +D A  +        C   V+ Y +L+           AY ++  M
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDM 328

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  PD  TY  L++  C +GK+ EA E L+ M +K   P V    +LV GL   G +
Sbjct: 329 FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE------------FCVE--MYYSV- 183
           + A+ ++  M+++G   +L TFN++I+  CK+G+V+             C    + YS  
Sbjct: 389 DDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTL 448

Query: 184 ----CK----------LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
               CK          LG+  D ++Y  ++  +   G ++EA  ++  + + G  P  S 
Sbjct: 449 IDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSH 508

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           YA II G+    + D+A      M  +G  PN   Y++LI    +  R  +A N L  M 
Sbjct: 509 YALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVML 568

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLA 316
           E G  P    +  + DG     K D A
Sbjct: 569 EKGCVPDVATYTSLIDGFCKINKMDAA 595



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 31/351 (8%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK   L+      + ++    K   ++   ++  +      +     YN+++  L
Sbjct: 183 KLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACL 242

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           CE   +  A  ++ +MI K   PD  TY  L++ +C   KM EA+  L++M  +   P V
Sbjct: 243 CESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTV 302

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G   A  L  A +++  M K G   DL T+N L++ +CK+G++E   E+   
Sbjct: 303 ITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEV 362

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +     DV TY IL+  + K G +D+A  LL  ++E G +P    +  +I G  + G+
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422

Query: 243 FD-------------------------DAFCFFSEMK----IKGHPPNRPVYTMLITMCG 273
            D                         D +C  + M+    I G  P++  Y+ ++    
Sbjct: 423 VDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLC 482

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             G+  EA   +  MT+ G  P S  + L+  GL +  + D  E +++L+V
Sbjct: 483 STGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGD--EALKMLQV 531



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 141/306 (46%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++ + + G +D A+  F       C      Y  L+  LC+ +    AY L+  M
Sbjct: 61  THNTILKAYCQIGDLDRALSHFRG--KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEM 118

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+K   PD   Y  L+   C  GK+  A+  L+ M ++   P V     L+ G      L
Sbjct: 119 IQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNAL 178

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++++ KM + G   D   +N+L+  +CK  ++E   ++   + + G   D  +Y  +
Sbjct: 179 DEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTV 238

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + ++G  +EA ++L  ++E    P    Y  ++ G  +  + D+A     +M  +  
Sbjct: 239 VACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRC 298

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    YT LI    R  R  +A   + +M + G++P    ++ + DGL   GK  L E 
Sbjct: 299 APTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK--LEEA 356

Query: 319 IELLEV 324
            ELLEV
Sbjct: 357 HELLEV 362



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 2/271 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+LL  LC+         L+  M+  G  PD  +Y  +V   C SGK  EA + L++M 
Sbjct: 200 YNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +K   P V   + L+ G      ++ A++++  M+ +     + T+ +LI    ++  + 
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA 319

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + K G+  D+ TY  L+  + KAG ++EA  LL  +VE    P    Y+ ++
Sbjct: 320 DAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILV 379

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G+ DDA      M  +G  PN   +  +I    + G+  E    L  M E+  T
Sbjct: 380 NGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT 439

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           P    +  + DG   C  + + +   +L +S
Sbjct: 440 PDVVTYSTLIDGY--CKANRMQDAFAILGIS 468



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 120/251 (47%), Gaps = 6/251 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G VD   +V       +C   V+ Y++L+   C+      A+A++   
Sbjct: 409 TFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL--- 465

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PDK +Y+ ++   CS+GK+ EAQE +  M+ +G  P      L++ GL +    
Sbjct: 466 ---GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERG 522

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M+  M ++G   +L T++ LI  +CK+  VE  + +   + + G   DV+TY  L
Sbjct: 523 DEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSL 582

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +D A++    + + G +P    Y  +I G  + G  + A      M  KG 
Sbjct: 583 IDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGC 642

Query: 259 PPNRPVYTMLI 269
            P+   Y  L+
Sbjct: 643 NPDAATYFSLM 653



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 149/326 (45%), Gaps = 8/326 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    +S    T + +++   K G ++ A E+       +C   V+ Y+ L+  
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC++     A  L+  M+ +G  P+  T+  +++ +C +GK+ E  + L+ M +    P 
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ G   A  ++ A  ++      G   D  +++S++E +C +G+VE   E+  
Sbjct: 442 VVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMD 495

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G     S Y ++I  +      DEA ++L  + E G +P    Y+ +I G+ +  
Sbjct: 496 LMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTK 555

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +DA      M  KG  P+   YT LI    +  +   A      M + G  P    ++
Sbjct: 556 RVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYN 615

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLR 327
           ++  G   C   ++ + IE++++ L 
Sbjct: 616 ILISGF--CQSGNVEKAIEVMQLMLE 639



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+M   + +    T S+++    K G VD+A  +        CQ  ++ +N+++   C+
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCK 419

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                  + ++  M      PD  TY+ L++ +C + +M++A   L      G +P    
Sbjct: 420 AGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKAS 473

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +++GL + G +E A+++++ M KQG       +  +I  +C     +  ++M   + 
Sbjct: 474 YSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMS 533

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   ++ TY ILI  + K   +++A  +L  ++E G  P  + Y  +I G  +  + D
Sbjct: 534 ERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMD 593

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            A+  F  M+  G  P++  Y +LI+   + G   +A   +  M E G  P
Sbjct: 594 AAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 112/282 (39%), Gaps = 33/282 (11%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV-------- 122
            Y+  R        P   TY  L+  +  +G  +   E   EM  + F+P V        
Sbjct: 8   GYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILK 67

Query: 123 ---------------RGRD----------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                          RG+           +L+ GL     ++ A Q++++MI++    D 
Sbjct: 68  AYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDA 127

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             +N LI  +CK G+++    +   + +     DV TY  LI    +   +DEA +L+  
Sbjct: 128 AVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEK 187

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           + E G  P    Y  ++ G+ ++ Q ++      EM   G  P+   Y  ++      G+
Sbjct: 188 MKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGK 247

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + EA   L +M E    P    ++ + DG     K D AE++
Sbjct: 248 YEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERL 289



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 2/193 (1%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L +SP   + S ++E     G V+ A EV +  T   C      Y  ++  LC+V+    
Sbjct: 465 LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +++ M  +G  P+  TY+IL+N  C + ++ +A   L  M +KG  P V     L+ 
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLID 584

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G      +++A Q    M   G   D   +N LI   C+SG VE  +E+   + + G   
Sbjct: 585 GFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644

Query: 191 DVSTYKILIPAVS 203
           D +TY  L+ +++
Sbjct: 645 DAATYFSLMRSLT 657


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 140/319 (43%), Gaps = 3/319 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS ++   G   +V  A+ +F +     CQ     YNS++
Sbjct: 142 MWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMI 201

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A + L EM D G 
Sbjct: 202 IMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGM 261

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +LV        +  A  +  +M  Q    D+ T+  LI  + K+G ++    
Sbjct: 262 QPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            +Y + + G   D      +I  + KAG +D+A +L   +      P    Y  IIK +F
Sbjct: 322 FFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALF 381

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             + +  +   +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 382 ESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP 441

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  + D L    ++DLA
Sbjct: 442 AAYCSLIDALGKAKRYDLA 460



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 136/299 (45%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G  D+A+++ N+      Q    +Y  L+    ++   HGA +L   M
Sbjct: 232 TYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM 291

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+     +G++ EA  F  EM  +G  P     + ++  L  AG L
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRL 351

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKI 197
           + A ++  +M     +  + T+N++I+ + +S      V  ++   K  G+     TY I
Sbjct: 352 DDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSI 411

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   +++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 412 LIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC 471

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +  VY ++I   G+ GR  +A N   EM ++G  P    ++ +  GL   G  D A
Sbjct: 472 GSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA 530



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--PVRGRDL--LVQGLLNA 135
           R+ +  D  TY  L++      +  E  + +QEM     NP   V   +L  +V+ L NA
Sbjct: 116 RRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSEVVRMLGNA 172

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVST 194
             +  A  +  ++  +      + +NS+I  +   G+ E   E+Y  +   G C  D  T
Sbjct: 173 KMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMT 232

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI A  K G  D A +LL+ + ++G +P   +Y  ++   F+      A   F EM+
Sbjct: 233 YSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMR 292

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +   P+   YT LI   G+ GR  EA ++  EM   G  P +   + + + L   G+ D
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLD 352

Query: 315 LAEKI 319
            A K+
Sbjct: 353 DAMKL 357



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 38/226 (16%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL------------ 62
           P T+ +  +I   GK G +D+A+++F +     C   V+ YN+++ AL            
Sbjct: 333 PDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPS 392

Query: 63  ------------------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
                                   C+      A  L+  M  KGF P    Y  L++A  
Sbjct: 393 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            + +   A E  QE+ +   +   R   ++++ L  AG L+ A  M ++M K G   D+ 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 512

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            +N+L+  + ++G ++  +     + + G   D+++Y I++  + K
Sbjct: 513 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 78/168 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S S  T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A     EM+  G  P V   
Sbjct: 455 KRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + L+ GL   G L+ A   + +M + G + D+ ++N ++  + K  ++
Sbjct: 515 NALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDL 562


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 134/277 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E+ + G +  A +VF++ +        + YN L+  LC       A  L+ RM
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R    P  RT+ +L++  C++G++ +A  +L+++   G  P +   ++L+ G    G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++V +M  +G      T+  L+ T  +S ++E   EM++ + ++GL  D  TY +L
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + EA +L  ++VE   +P   +Y  +I G  +      A  F  EM   G 
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   Y   I +  + G+ +EA   L EMTE GL P
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/300 (22%), Positives = 125/300 (41%), Gaps = 2/300 (0%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           + I+ F ++G V    E+  +         V +Y  L+ A C       A  +  RM   
Sbjct: 112 ITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDL 171

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G   ++  Y I++N +   G  ++  E  Q+M   G  P +   + L+      G L  A
Sbjct: 172 GLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLA 231

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++ +++ K+G   +  T+N LI  +C+ G+V     +   + +  +     T+ +L+  
Sbjct: 232 FKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDG 291

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +   G +D+A   L  L   G  P    Y  +I G  + G          EM+ +G  P+
Sbjct: 292 LCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPS 351

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           +  YT+L+    R     +A      M  +GL P    + ++  GL  C K ++ E  +L
Sbjct: 352 KVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL--CIKGNMVEASKL 409



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 35/245 (14%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV----------------------- 122
           D  ++ I + A+C +G + +  E L +M   G +P V                       
Sbjct: 106 DVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMF 165

Query: 123 -RGRDL-----------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            R  DL           ++ G    GY +   ++  KM   G + +L T+NSLI   C+ 
Sbjct: 166 SRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRD 225

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G++    +++  + K G+  +  TY ILI  + + G + +A  LL  +      P    +
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTF 285

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G+   GQ D A  +  ++K+ G  P    Y +LI+   + G     +  + EM +
Sbjct: 286 NMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMED 345

Query: 291 MGLTP 295
            G++P
Sbjct: 346 RGISP 350



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK  +++ + +T +++++     G +D A+    K         ++ YN L+    +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V        L+R M  +G  P K TY IL+N +  S  + +A E    M   G  P    
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHT 389

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+ GL   G +  A ++   M++     +   +N++I   CK       ++    + 
Sbjct: 390 YGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMV 449

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           K G+  +V++Y   I  + K G   EA RLL  + E G KP  SL + +
Sbjct: 450 KNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 105/274 (38%), Gaps = 75/274 (27%)

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE-------- 174
           R RD ++   L +  LE +      M+ +G      +FN+ ++ + KSG ++        
Sbjct: 39  RPRDAVINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTE 98

Query: 175 ------------------FC--------VEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                             FC         E+   +  +G+  +V  Y ILI A  + G I
Sbjct: 99  YLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDI 158

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+A  +   + + G      +Y  +I G F++G   D F  + +MK+ G  PN   Y  L
Sbjct: 159 DQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSL 218

Query: 269 IT------------------------------------MCGRGGRFVEAANYLVEMTEMG 292
           IT                                    +C R G+  +A   L  M    
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC-RKGQVSKAEGLLERMKRAH 277

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA----EKIELL 322
           + P +R F+++ DGL N G+ D A    EK++L+
Sbjct: 278 INPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLI 311



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 54/120 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++   LMK   L     T  ++I      G +  A +++      + Q   ++YN+++  
Sbjct: 372 YEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMING 431

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+    + A   +  M++ G  P+  +Y   +   C  GK  EA+  L+EM++ G  PP
Sbjct: 432 YCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPP 491


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  120 bits (302), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 143/339 (42%), Gaps = 35/339 (10%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP+    + + +       NA +VF++   +     V   N+ L +L +      A    
Sbjct: 128 SPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFY 187

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M R    P+  T+ ++++A C SGK+ +A E L+EM   G  P V   + L+ G  N 
Sbjct: 188 REMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNK 247

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEM------------ 179
           G L  A ++ N M K G   ++ TFNSLI   CK G++     F  EM            
Sbjct: 248 GLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTY 307

Query: 180 -------------------YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                              Y  + + G+ AD+ TY  LI  + K G   +A  L+  L +
Sbjct: 308 NTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDK 367

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           +   P  S Y+ +I G   R   D AF  +  M   G  PN   + ML +   +   F  
Sbjct: 368 ENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEG 427

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A N L++M    +   S     + DGL  CGK +LA K+
Sbjct: 428 AFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKL 466



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 126/296 (42%), Gaps = 19/296 (6%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSL-LFALCEVKLFHGAYALIRRMI--RKGFVPDK----- 87
           ++E FN     N     L  +S+ L  L +   F  A +++R ++  R   +P K     
Sbjct: 59  SLEFFNSLKTLNPISLTLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTL 118

Query: 88  -----------RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
                      R +  L   +    K R A +    M D GF P V   +  +  LL+  
Sbjct: 119 LFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFH 178

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            ++ A     +M +     +  TFN ++  +CKSG++E  VE+   +  +G+  +V +Y 
Sbjct: 179 RVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYN 238

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI      G++  A +L + + ++G +P    +  +I G  + G+  +A  FFSEMK+ 
Sbjct: 239 TLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVM 298

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              PN   Y  LI   G+ G    A     EM   G+      ++ +  GL   GK
Sbjct: 299 NVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGK 354



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 117/281 (41%), Gaps = 2/281 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C     +++SL      +  F  A  +  RM   GF+P   +    +++     ++  A 
Sbjct: 125 CDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIAL 184

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            F +EM     +P     +L++  L  +G LE A +++ +M   G   ++ ++N+LI   
Sbjct: 185 TFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGH 244

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C  G +    ++   + K GL  +V T+  LI    K G + EA R    +      P  
Sbjct: 245 CNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNT 304

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G  + G  + A   + EM   G   +   Y  LI    + G+  +AA  + E
Sbjct: 305 VTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKE 364

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           + +  L P +  +  +  G   C + +     +L +  +RS
Sbjct: 365 LDKENLVPNASTYSALISG--QCARKNSDRAFQLYKSMVRS 403



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 87/216 (40%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   LM    L  +  T + +I  F K G +  A   F++    N     + YN+L+   
Sbjct: 255 KLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGY 314

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +V   + A  +   M+R G   D  TY  L+   C  GK ++A   ++E+  +   P  
Sbjct: 315 GQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNA 374

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G       + A Q+   M++ G   + +TF  L     K+ + E    +   
Sbjct: 375 STYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMD 434

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           +    + +D +T   +   + + G  + A +L H +
Sbjct: 435 MFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEM 470


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 130/278 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +  A++V  +    N     ++YN  +  LC +  F  A + ++ M   G  PD+ 
Sbjct: 551 KTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQA 610

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  +++A C  G   +A + L EM      P +     LV GLL AG +E AK ++N+M
Sbjct: 611 TYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEM 670

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              GF     T+  +++    S      +E++  +   GL AD++ Y  L+  +   GM 
Sbjct: 671 ASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMT 730

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            +A  +L  ++  G  P    +  +I G  +    D+AF  +++M  +G  PN   +  L
Sbjct: 731 RKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTL 790

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +      GR  EA   + EM +MGL P +  +D++  G
Sbjct: 791 LGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTG 828



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 139/315 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    LS+     + ++  F   G  D A EV  +  A   +  V+ + +L+   C+
Sbjct: 212 VERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCK 271

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +K    A+ L   M+R G +PD  T + LV+  C  G+  EA    +EM   G  P    
Sbjct: 272 MKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVT 331

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
               +  L     +  +  ++ +M+ +G  +DL  + ++++ + K G++E   ++     
Sbjct: 332 YCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHAL 391

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  +  TY +L+ A  +AG ID A ++L  + E    P    ++ I+ G+ +RG   
Sbjct: 392 SDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIA 451

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A  +  +MK  G  PN   Y  LI    +      A +   +M   G+   +   D + 
Sbjct: 452 KAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLV 511

Query: 305 DGLKNCGKHDLAEKI 319
           +GL+  G  + AE +
Sbjct: 512 NGLRKNGNIEEAEAL 526



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 127/291 (43%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +++  GK G ++ A +V     + N     + Y  L+ A C      GA  ++ +M  
Sbjct: 368 TTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEE 427

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   P+  T++ ++N     G + +A  ++++M D G  P V     L+ G       E+
Sbjct: 428 KSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEA 487

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +   M+ +G   +    +SL+  + K+G +E    ++  + + GL  D   Y  L+ 
Sbjct: 488 ALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMD 547

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G +  A ++   L+E    P   +Y   I  + R G+F +A  F  EM+  G  P
Sbjct: 548 GLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEP 607

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           ++  Y  +I+   R G   +A   L EM    + P    +  +  GL   G
Sbjct: 608 DQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAG 658



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 143/312 (45%), Gaps = 4/312 (1%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V+P   T    I+   K   V+ ++ +  +  +      +++Y +++  L +      
Sbjct: 323 IGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEE 382

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  ++R  +     P+  TY +LV+A C +G +  A++ L +M +K  +P V     ++ 
Sbjct: 383 AKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILN 442

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL+  G +  A   + KM   G   ++ T+ +LI+   K    E  +++Y  +   G+ A
Sbjct: 443 GLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEA 502

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +      L+  + K G I+EA  L  ++ E G       YA ++ G+F+ G    A    
Sbjct: 503 NNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVG 562

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            E+  +   P+  VY + I    R G+F EA ++L EM   GL P    ++ +      C
Sbjct: 563 QELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISA--QC 620

Query: 311 GKHDLAEKIELL 322
            + + ++ ++LL
Sbjct: 621 REGNTSKALKLL 632



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 128/299 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++ N+    + +  ++ Y +L+  L E  +
Sbjct: 600 MRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGV 659

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M   GF P   TY  ++ A   S       E  + M   G +  +   + 
Sbjct: 660 VEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNT 719

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L   G    A  ++++M+ +G   D  TFN+LI   CKS  ++     Y  +   G
Sbjct: 720 LVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQG 779

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +++T+  L+  +  AG I EA  ++  + + G +P    Y  ++ G  ++    +A 
Sbjct: 780 LSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEAL 839

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EM  KG  P    Y  LI+   + G   +A     EM   G+   S  +D++ +G
Sbjct: 840 RLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNG 898



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 115/260 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ +N+L+   C+V+    A A++ RM  +G   D   Y  LV  +  SG    A E  +
Sbjct: 189 VVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAE 248

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P V     L+        +E A  +   M++ G + D+ T ++L++ +C+ G
Sbjct: 249 RMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDG 308

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                  ++  + K+G+  +  TY   I +++K   ++E+  LL  +V  G      +Y 
Sbjct: 309 RFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYT 368

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++  + + G+ ++A             PN   YT+L+    R G    A   L++M E 
Sbjct: 369 TVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEK 428

Query: 292 GLTPISRCFDLVTDGLKNCG 311
            ++P    F  + +GL   G
Sbjct: 429 SVSPNVVTFSSILNGLVKRG 448



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 139/327 (42%), Gaps = 2/327 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E MK   +  S  T + +I E+ K   ++ A  ++           V+  ++L+  
Sbjct: 244 WEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDG 303

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC    F  AYAL R M + G  P+  TY   +++     ++ E+   L EM  +G    
Sbjct: 304 LCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMD 363

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +     ++  L   G +E AK ++   +      +  T+  L++  C++G ++   +M  
Sbjct: 364 LVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLL 423

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  +V T+  ++  + K G I +A   +  + + G  P    Y  +I G F+  
Sbjct: 424 QMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQ 483

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             + A   + +M  +G   N  +   L+    + G   EA     +M E GL      + 
Sbjct: 484 GQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYA 543

Query: 302 LVTDGLKNCGKHDLAEKI--ELLEVSL 326
            + DGL   G    A K+  EL+E +L
Sbjct: 544 TLMDGLFKTGNMPAALKVGQELMERNL 570



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 115/281 (40%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ V  + T       V+ YN+L+           A+ +  RM   G  P   T+  L+ 
Sbjct: 208 ALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIG 267

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C   ++ EA    + M   G  P V     LV GL   G    A  +  +M K G   
Sbjct: 268 EYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAP 327

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T+ + I+++ K   V   + +   +   G+  D+  Y  ++  + K G I+EA  +L
Sbjct: 328 NHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVL 387

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            + + D   P    Y  ++    R G  D A     +M+ K   PN   ++ ++    + 
Sbjct: 388 RHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKR 447

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G   +AA Y+ +M + G+ P    +  + DG   C   + A
Sbjct: 448 GCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAA 488



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ELM    L       + ++     HG+   A  V ++          + +N+L+   C+ 
Sbjct: 703 ELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKS 762

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+A   +M+ +G  P+  T+  L+    S+G++ EA   + EM   G  P     
Sbjct: 763 SHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTY 822

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D+LV G         A ++  +M+ +GF+    T+NSLI    K+G +    E++  + +
Sbjct: 823 DILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKR 882

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            G+    STY IL+   SK     E   LL ++ E G KP
Sbjct: 883 RGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMKELGFKP 922



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 113/268 (42%), Gaps = 4/268 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  L  L E      A  ++  M ++G   D  T +  +     +G + EA   L EM 
Sbjct: 120 YNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAA-LAEML 178

Query: 115 DKGFNPP---VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +G       V G + L+ G      + +A  +V +M  QG  LD+  +N+L+     SG
Sbjct: 179 VRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSG 238

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + +   E+   +   G+   V T+  LI    K   I+EAF L   +V  G  P     +
Sbjct: 239 DADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLS 298

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ R G+F +A+  F EM   G  PN   Y   I    +  R  E+   L EM   
Sbjct: 299 ALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSR 358

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+      +  V D L   GK + A+ +
Sbjct: 359 GVAMDLVMYTTVMDRLGKEGKIEEAKDV 386



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 3/276 (1%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT--YAILVNAWCSSGKMREAQEFLQEM 113
           ++ L  L    L   A AL   ++R   +       +  L++ +C    M  A   ++ M
Sbjct: 156 STALVGLSRTGLVGEAAALAEMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERM 215

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + +G +  V G + LV G   +G  ++A ++  +M   G    + T  +LI   CK   +
Sbjct: 216 TTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRI 275

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E    +Y  + + G+  DV T   L+  + + G   EA+ L   + + G  P    Y   
Sbjct: 276 EEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTF 335

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + +  + +++     EM  +G   +  +YT ++   G+ G+  EA + L       +
Sbjct: 336 IDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNI 395

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           TP    + ++ D     G  D AE++ LL++  +SV
Sbjct: 396 TPNCVTYTVLVDAHCRAGNIDGAEQM-LLQMEEKSV 430



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 100/234 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           + +YN+L+  LC   +   A  ++  M+ +G  PD  T+  L+   C S  +  A     
Sbjct: 714 ITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYA 773

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +G +P +   + L+ GL +AG +  A  ++ +M K G   +  T++ L+    K  
Sbjct: 774 QMLHQGLSPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKS 833

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                + +Y  +   G     STY  LI   +KAGM+++A  L   +   G     S Y 
Sbjct: 834 NKVEALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYD 893

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            ++ G  +     +      +MK  G  P++   + +     + G   EA   L
Sbjct: 894 ILLNGWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLL 947



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 136/347 (39%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T   +I+ F K    + A++V+        +    + +SL+  L +   
Sbjct: 460 MKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGN 519

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A AL + M  +G + D   YA L++    +G M  A +  QE+ ++  +P     ++
Sbjct: 520 IEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNV 579

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +  L   G    AK  + +M   G   D  T+N++I   C+ G     +++   +    
Sbjct: 580 FINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSS 639

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG----------- 236
           +  ++ TY  L+  + +AG++++A  LL+ +   G  P P  Y  +++            
Sbjct: 640 IKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVIL 699

Query: 237 -----MFRRGQFDD-------------------AFCFFSEMKIKGHPPNRPVYTMLITMC 272
                M   G   D                   A     EM  +G  P+   +  LI   
Sbjct: 700 EVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGH 759

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +      A     +M   GL+P    F+ +  GL++ G+   A+ +
Sbjct: 760 CKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTV 806



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 42/96 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSL+    +  + + A  L   M R+G +    TY IL+N W       E +  L++M 
Sbjct: 857 YNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRILLKDMK 916

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + GF P       + +     G    A++++  + K
Sbjct: 917 ELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTLFK 952


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 134/292 (45%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           TI  M+    S    T + +I  + K G +  A    ++    N +   +  N++L  LC
Sbjct: 405 TITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLC 464

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             K    AY L+    ++G+  D+ +Y  L+  +   G +  A +   EM +K   P   
Sbjct: 465 REKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTV 524

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL   G  E A   +N++++ G + D  T+N+++   C+ G+VE   + +  +
Sbjct: 525 TYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKM 584

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +     DV T  IL+  +   G++++A +L +  V  G       Y  +I  + + G+ 
Sbjct: 585 VENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRL 644

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DDAF   SEM+ K   P+   Y  +IT     GR  EA  ++ +M E G  P
Sbjct: 645 DDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLP 696



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T ++++  + K G +  A  V    T  N    V  YN L+  LC    
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   M     +PD  +Y  L+N      K+ EA + L+EMS+KG  P     ++
Sbjct: 329 IEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNI 388

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +V+     G ++ A   + KM + GF  D  T+N+LI   CK+G +         + +  
Sbjct: 389 MVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKN 448

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  T   ++  + +   ++EA++LL +  + G+      Y  +I G F+ G  D A 
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRAL 508

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EMK K   P+   Y  +I    + G+  +A + L E+ E GL P    ++ +  G
Sbjct: 509 KLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHG 567



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 2/285 (0%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E FN          V  +N +++  C    F  A   +  M +    PD  TY  +++  
Sbjct: 194 EAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTL 253

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C  G++ +A++ L +M  +G  P     ++LV G    G+L+ A  ++  M +   + D+
Sbjct: 254 CKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDV 313

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+N LI  +C  G +E   ++   +  L L  DV +Y  LI    +   I EAF+LL  
Sbjct: 314 WTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           + E G KP    +  ++K   + G+ DDA    ++M+  G  P+   Y  LI    + G 
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             EA   + EM    +   S   + +   L  C +  L E  +LL
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTL--CREKKLEEAYKLL 476



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 133/291 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IELM   NL     T +++I      G ++ A ++ ++         V+ YN+L+    E
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L+  M  KG  P+  T+ I+V  +C  GKM +A   + +M + GF+P    
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G   AG +  A + +++M ++   +D  T N+++ T+C+  ++E   ++  S  
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G   D  +Y  LI    K G +D A +L   + E    P    Y  II G+ + G+ +
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            A    +E+   G  P+   Y  ++    R G   +A  +  +M E    P
Sbjct: 541 QAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKP 591



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 145/324 (44%), Gaps = 2/324 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + +M  YN S    T + I++   K G + +A ++     +         YN L++  C+
Sbjct: 231 LNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK 290

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  +I  M +   +PD  TY +L+N  C+ G++ EA +   EM +    P V  
Sbjct: 291 MGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVS 350

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G L    +  A +++ +M ++G   +  T N +++  CK G+++        + 
Sbjct: 351 YNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKME 410

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   D  TY  LI    KAG + EAFR +  +     K        I++ + R  + +
Sbjct: 411 ESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLE 470

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A+   S  + +G+  +   Y  LI    + G    A     EM E  + P +  ++ + 
Sbjct: 471 EAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCII 530

Query: 305 DGLKNCGKHD--LAEKIELLEVSL 326
            GL  CGK +  +++  ELLE  L
Sbjct: 531 GGLCQCGKTEQAISKLNELLESGL 554



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 131/296 (44%), Gaps = 3/296 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG--- 70
           S S   L   I  + + G   +A ++F K      +  +L  N+LL +L      H    
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSF 191

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           +       I+ G VP+  T+ I++  +C   K ++A EFL  M     +P     + ++ 
Sbjct: 192 SREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILD 251

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G L  A+ ++  M  +G + +  T+N L+   CK G ++    +   + +  L  
Sbjct: 252 TLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLP 311

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV TY +LI  +   G I+EAF+L   +      P    Y  +I G     +  +AF   
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  KG  PN   + +++    + G+  +A+N + +M E G +P    ++ + +G
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 134/331 (40%), Gaps = 51/331 (15%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++EE  + G+  NAV                 +N ++   C+      A   I +M   G
Sbjct: 370 LLEEMSEKGVKPNAVT----------------HNIMVKWYCKEGKMDDASNTITKMEESG 413

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F PD  TY  L+N +C +G M EA   + EM  K         + +++ L     LE A 
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 143 QMVNKMIKQGFVLD-----------------------------------LETFNSLIETI 167
           ++++   K+G+ +D                                     T+N +I  +
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C+ G+ E  +     + + GL  D +TY  ++    + G +++AF+  + +VE+  KP  
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
                +++G+   G  + A   F+    KG   +   Y  LIT   + GR  +A N L E
Sbjct: 594 FTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSE 653

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           M E  L P    ++ +   L + G+   AE+
Sbjct: 654 MEEKELGPDHYTYNAIITALTDSGRIREAEE 684



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 3/197 (1%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYS 182
           D  +   + +G    A Q+  KM +     +L T N+L+ ++ +   S  V F  E +  
Sbjct: 139 DTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFND 198

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             KLG+  +V+T+ I+I          +A   L+ + +    P    Y  I+  + ++G+
Sbjct: 199 AIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGR 258

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA     +MK +G  PNR  Y +L+    + G   EAAN +  MT+  L P    +++
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 303 VTDGLKNCGKHDLAEKI 319
           + +GL N G+ + A K+
Sbjct: 319 LINGLCNEGRIEEAFKL 335



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 116/298 (38%), Gaps = 42/298 (14%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SLL         H  +  I R+      P K      + A+  SG+   A +  ++M   
Sbjct: 109 SLLLGFIATDRRHDLHLSILRLTS----PSKALLDTAIGAYVQSGQPHHAFQIFKKMKRL 164

Query: 117 GFNPPVRGRDLLVQGLL---NAGYLESAKQMVNKMIKQGFVLDLETF------------- 160
              P +   + L+  L+   ++  +  +++  N  IK G V ++ TF             
Sbjct: 165 RLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKF 224

Query: 161 ----------------------NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                                 N++++T+CK G +    ++   +   GL  + +TY IL
Sbjct: 225 KDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNIL 284

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G + EA  ++  + ++   P    Y  +I G+   G+ ++AF    EM+    
Sbjct: 285 VYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKL 344

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y  LI  C    +  EA   L EM+E G+ P +   +++       GK D A
Sbjct: 345 LPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDA 402


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 122/237 (51%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  +V+ A + F++  A      V+ Y++L++  C      GA++L+  MI 
Sbjct: 209 STIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMIL 268

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   P+  TY IL++A C  GK++EA++ L EM  KG    V   + ++ GL  +  L+ 
Sbjct: 269 KNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDK 328

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  KM K G   +  T+ +LI+ +CK G ++   +++  +   G C DV TY ++I 
Sbjct: 329 ATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMIS 388

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            + K GM D+A  +   + ++G  P    +  II+ +F + + D A      M  KG
Sbjct: 389 GLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKG 445



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 151/315 (47%), Gaps = 2/315 (0%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T++L  +++     G V  ++   +K  A   Q   + Y +LL  LC+
Sbjct: 123 LGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 182

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  L+R +  +   PD   Y+ +++  C    + +A +F  EM+ +G  P V  
Sbjct: 183 IGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVIT 242

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G   AG L  A  ++N+MI +    ++ T+N LI+ +CK G+V+   ++   + 
Sbjct: 243 YSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMH 302

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G  ADV TY  ++  + K+  +D+A  L   + + G +P    Y  +I G+ + G+  
Sbjct: 303 HKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLK 362

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F  + +KG   +   Y ++I+   + G F +A     +M + G  P +  FD++ 
Sbjct: 363 NAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIII 422

Query: 305 DGLKNCGKHDLAEKI 319
             L    ++D AEK+
Sbjct: 423 RSLFEKDENDKAEKL 437



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 134/290 (46%), Gaps = 2/290 (0%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           +VD+ V  FN+         ++ +  +L  L ++K +  A +L R+M  KG  P+  T  
Sbjct: 45  VVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLN 104

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +C  G+M  +   L ++   G+ P     + L++GL   G ++ +    +K++ Q
Sbjct: 105 ILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQ 164

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           GF ++  ++ +L+  +CK GE    V++   +       DV  Y  +I  + K  ++++A
Sbjct: 165 GFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQA 224

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +     +   G  P    Y+ +I G    GQ   AF   +EM +K   PN   Y +LI  
Sbjct: 225 YDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDA 284

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             + G+  EA   L EM   G       ++ V DGL  C   +L +   L
Sbjct: 285 LCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGL--CKSQNLDKATAL 332



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 130/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  F   G +  +  V  K      Q   +  N+L+  LC       +     ++
Sbjct: 102 TLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKV 161

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  ++ +Y  L+N  C  G+ R A + L+ + D+   P V     ++ GL     +
Sbjct: 162 VAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIV 221

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A    ++M  +G   ++ T+++LI   C +G++     +   +    +  +V TY IL
Sbjct: 222 NQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNIL 281

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ K G + EA +LL  +   G       Y  ++ G+ +    D A   F +MK  G 
Sbjct: 282 IDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGI 341

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN+  YT LI    +GGR   A      +   G     R ++++  GL   G  D A
Sbjct: 342 QPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKA 399



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 89/177 (50%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T +++I+   K G V  A ++  +         V+ YNS+L  LC+ +    A
Sbjct: 270 NINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKA 329

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            AL  +M + G  P+K TY  L++  C  G+++ AQ+  Q +  KG    VR  ++++ G
Sbjct: 330 TALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISG 389

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           L   G  + A  M +KM   G + +  TF+ +I ++ +  E +   ++ + +   GL
Sbjct: 390 LCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K   +D A  +F K   +  Q     Y +L+  LC+      A  L + +
Sbjct: 312 TYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHL 371

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG   D RTY ++++  C  G   +A     +M D G  P     D++++ L      
Sbjct: 372 LVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDEN 431

Query: 139 ESAKQMVNKMIKQGFV 154
           + A+++++ MI +G +
Sbjct: 432 DKAEKLLHGMIAKGLL 447



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 53/111 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK + +  +  T + +I+   K G + NA ++F       C   V  YN ++  LC+  +
Sbjct: 336 MKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGM 395

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           F  A A+  +M   G +P+  T+ I++ +     +  +A++ L  M  KG 
Sbjct: 396 FDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 138/289 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++I+   K   ++ A  +F       C    + ++SL+  L +      AY+L  +M
Sbjct: 196 TVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKM 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G VP    Y  L+ ++   G+  +  +  +EM   G +P +   +  +  +  AG  
Sbjct: 256 LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGET 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +  ++   GF+ D  +++ LI  + K+G      E++Y++ + G   D   Y  +
Sbjct: 316 EKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAV 375

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+G +++A++LL  +   GH P    Y  +I G+ +  + D+A+  F E K  G 
Sbjct: 376 IDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGI 435

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             N  VY+ LI   G+ GR  EA   + E+ + GLTP    ++ + D L
Sbjct: 436 KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDAL 484



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 124/258 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  L +  L +  Y L   M  +G V D   Y  +++ +C SGK+ +A + L+EM 
Sbjct: 337 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 396

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V     ++ GL     L+ A  +  +    G  L++  ++SLI+   K G ++
Sbjct: 397 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 456

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+ A+ KA  I+EA     ++ +    P    Y+ +I
Sbjct: 457 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILI 516

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R  +F+ AF F+ EM+  G  PN   YT +I+   + G  +EA+         G  
Sbjct: 517 NGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGI 576

Query: 295 PISRCFDLVTDGLKNCGK 312
           P S  ++ + +GL +  K
Sbjct: 577 PDSASYNAMIEGLSSANK 594



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 141/328 (42%), Gaps = 35/328 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+  GK G VD+A  ++ K          ++Y SL+ +  +       + + + M
Sbjct: 231 TFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEM 290

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD       ++    +G+  + +   +E++  GF P  R   +L+ GL+ AG  
Sbjct: 291 VHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLA 350

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++   M +QG VLD   +N++I+  CKSG+V    ++   +   G    V TY  +
Sbjct: 351 NETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSV 410

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K   +DEA+ L      +G K    +Y+ +I G  + G+ D+A+    E+  KG 
Sbjct: 411 IDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGL 470

Query: 259 -----------------------------------PPNRPVYTMLITMCGRGGRFVEAAN 283
                                              PPN+  Y++LI    R  +F +A  
Sbjct: 471 TPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFV 530

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +  EM ++GL P +  +  +  GL   G
Sbjct: 531 FWQEMQKLGLKPNTITYTTMISGLAKAG 558



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 131/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   + G ++ A+E+ +          VL  N ++  LC+ +    A ++   M
Sbjct: 161 TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGM 220

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ L++     G++ +A    ++M D G  P       L++     G  
Sbjct: 221 DDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRK 280

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M+  G   DL   N+ ++ + K+GE E    ++  +   G   D  +Y IL
Sbjct: 281 EDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSIL 340

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG+ +E + L + + E G       Y  +I G  + G+ + A+    EMK+KGH
Sbjct: 341 IHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGH 400

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP    Y  +I    +  R  EA     E    G+      +  + DG    G+ D A
Sbjct: 401 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEA 458



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 136/320 (42%), Gaps = 11/320 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFG----------KHGLVDNAVEVFNKCTAFNCQQC 51
           +  I+ M+ +    +    +++I + G          K   +D AVE+F +        C
Sbjct: 30  FDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVELFEQLEQNRKVPC 89

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
              YN+++        F  AY L+ R   KG +P    Y  ++       ++ EA    +
Sbjct: 90  AYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFE 149

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM      P V   ++L+  L   G L +A ++ + M + G   ++ T N +I+ +CK+ 
Sbjct: 150 EMKRDAV-PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQ 208

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E    ++  +       +  T+  LI  + K G +D+A+ L   +++ GH P   +Y 
Sbjct: 209 KLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYT 268

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I+  F+ G+ +D    + EM   G  P+  +    +    + G   +      E+   
Sbjct: 269 SLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAH 328

Query: 292 GLTPISRCFDLVTDGLKNCG 311
           G  P +R + ++  GL   G
Sbjct: 329 GFIPDARSYSILIHGLVKAG 348



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 124/297 (41%), Gaps = 1/297 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  +G  G  D A  +  +  A      V+ YN +L  L + +    A  +   M R  
Sbjct: 96  MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDA 155

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  TY IL++  C  GK+  A E   +M   G  P V   ++++  L  A  LE A 
Sbjct: 156 -VPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEAC 214

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   M  +    +  TF+SLI+ + K G V+    +Y  +   G       Y  LI + 
Sbjct: 215 SIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSF 274

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  ++  ++   +V  G  P  +L    +  +F+ G+ +     F E+   G  P+ 
Sbjct: 275 FKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDA 334

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y++LI    + G   E       M E G    +  ++ V DG    GK + A ++
Sbjct: 335 RSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 6/267 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYAL 74
           ++ S++I    K GL +   E+F    A   Q CVL    YN+++   C+    + AY L
Sbjct: 335 RSYSILIHGLVKAGLANETYELF---YAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQL 391

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M  KG  P   TY  +++      ++ EA    +E    G    V     L+ G   
Sbjct: 392 LEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGK 451

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G ++ A  ++ +++++G   ++ T+N L++ + K+ E+   +  + S+  L    +  T
Sbjct: 452 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQIT 511

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ILI  + +    ++AF     + + G KP    Y  +I G+ + G   +A   FS  K
Sbjct: 512 YSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 571

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEA 281
             G  P+   Y  +I       + ++A
Sbjct: 572 ANGGIPDSASYNAMIEGLSSANKAMDA 598



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   + ++    S +I+ FGK G +D A  +  +         V  +N LL AL + 
Sbjct: 428 EEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 487

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +  + A    + M      P++ TY+IL+N  C   K  +A  F QEM   G  P     
Sbjct: 488 EEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITY 547

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL  AG +  A  + ++    G + D  ++N++IE +  + +      ++     
Sbjct: 548 TTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYALFEETRL 607

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEA 211
            G      T  +L+ A+ KA  +++A
Sbjct: 608 KGCNIHTKTCVVLLDALHKAECLEQA 633



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 92/246 (37%), Gaps = 28/246 (11%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   GF P       LV     S K+REA + +Q M    F P      +L+        
Sbjct: 1   MSLSGFGPSSNISIELVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIG------- 53

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
                       K G +L           +CK+  ++  VE++  + +         Y  
Sbjct: 54  ------------KVGLMLLFPW------VLCKANRLDEAVELFEQLEQNRKVPCAYAYNT 95

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I     AG  DEA+ LL      G  P    Y  I+  + ++ + ++A   F EMK + 
Sbjct: 96  MIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMK-RD 154

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN P Y +LI M  R G+   A     +M   GL P     +++ D L  C    L E
Sbjct: 155 AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRL--CKAQKLEE 212

Query: 318 KIELLE 323
              + E
Sbjct: 213 ACSIFE 218



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 93/215 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 389 YQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDG 448

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  +++KG  P+  T+  L++A   + ++ EA    Q M D    P 
Sbjct: 449 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPN 508

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M K G   +  T+ ++I  + K+G +     ++ 
Sbjct: 509 QITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFS 568

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D ++Y  +I  +S A    +A+ L  
Sbjct: 569 RFKANGGIPDSASYNAMIEGLSSANKAMDAYALFE 603


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 131/275 (47%), Gaps = 2/275 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ YN+++    +      A  L   M+++GFVPD  T+  ++NA C +  +  A+
Sbjct: 112 CSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAE 171

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M D G  P       ++ G    G  E A +M  +M  +G + D+ ++NS ++++
Sbjct: 172 LLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSL 231

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G  +   E++YS+   G   ++ TY IL+   +  G   +     + +  DG     
Sbjct: 232 CKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANC 291

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            ++  +I    +RG  D+A    SEM+ +G  P+   Y+ LI+   R GR  +A +   +
Sbjct: 292 LVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQ 351

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           M   G+ P +  +  +  G   C   DL +  EL+
Sbjct: 352 MIGTGVQPNTVVYHSLIQGF--CTHGDLVKAKELV 384



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 144/302 (47%), Gaps = 2/302 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    K G V +A  +F+       +  ++++N+L+   C V     A++++  MI  G
Sbjct: 403 IVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG 462

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  LVN +  SG++ +     +EMSDK   P     ++++ GL  AG   +A+
Sbjct: 463 IGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQ 522

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +M+++MI  G  + L T+N +++ +C++   +  + M+  +C + +  +++T   +I ++
Sbjct: 523 KMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSM 582

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
                 +EA  L   + + G  P  S Y  +I+ + + G  ++A   FS M+  G  P  
Sbjct: 583 YTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCS 642

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +    I      G  V+A NY+ ++   G +                GK +  E+I+LL
Sbjct: 643 RLLNDTIRTLLEKGEIVKAGNYMSKVD--GKSISLEASTSSLLLSLFSGKGNYREQIQLL 700

Query: 323 EV 324
            V
Sbjct: 701 PV 702



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 131/295 (44%), Gaps = 3/295 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++  +   G   + +  FN           L++  L+ A  +  +   A  ++  M
Sbjct: 258 TYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEM 317

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY+ L++A C  G++ +A +   +M   G  P       L+QG    G L
Sbjct: 318 QGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDL 377

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             AK++V +M+  G    ++  FNS++ +ICK G V     ++  V  +G  +D+  +  
Sbjct: 378 VKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNT 437

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI      G + +AF +L  ++  G  P    Y  ++ G F+ G+ DD    F EM  K 
Sbjct: 438 LIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKK 497

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNC 310
             P    Y +++    R GR V A   L EM   G T     ++++  GL   NC
Sbjct: 498 IKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNC 552



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 130/275 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K G +  A  ++++         V+ +NS++ ALC+ +    A  L+R+M
Sbjct: 118 TYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQM 177

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+K TY  +++ + + G+  EA +  +EM+ +G  P +   +  +  L   G  
Sbjct: 178 VDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRS 237

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   M  +G   ++ T+  L+      G     +  + ++   G+ A+   + IL
Sbjct: 238 KEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTIL 297

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K GM+DEA  +L  +   G  P    Y+ +I  + R G+  DA   F++M   G 
Sbjct: 298 IDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGV 357

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            PN  VY  LI      G  V+A   + EM   G+
Sbjct: 358 QPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGI 392



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%), Gaps = 40/303 (13%)

Query: 56  NSLLFALCEVKLFHGAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           N++L  LC  K    A   L+RRM   G VPD  +YAI++   C   + ++A + L+ M+
Sbjct: 47  NTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMA 106

Query: 115 -DKGF-NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS-- 170
            ++G  +P V   + ++ G    G +  A  + ++M++QGFV D+ T NS+I  +CK+  
Sbjct: 107 KEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARA 166

Query: 171 ---------------------------------GEVEFCVEMYYSVCKLGLCADVSTYKI 197
                                            G  E   +M+  +   GL  D+ ++  
Sbjct: 167 VDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNS 226

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            + ++ K G   EA  + +++   GH+P    Y  ++ G    G F D   FF+ MK  G
Sbjct: 227 FMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG 286

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              N  V+T+LI    + G   EA   L EM   GL+P    +  +   L   G+  LA+
Sbjct: 287 IVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGR--LAD 344

Query: 318 KIE 320
            ++
Sbjct: 345 AVD 347



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 1/289 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K   VDNA  +  +          + Y S++     +  +  A  + R M
Sbjct: 153 THNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +PD  ++   +++ C  G+ +EA E    M+ KG  P +    +L+ G    G  
Sbjct: 213 TGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCF 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                  N M   G V +   F  LI+   K G ++  + +   +   GL  DV TY  L
Sbjct: 273 ADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G + +A    + ++  G +P   +Y  +I+G    G    A     EM   G 
Sbjct: 333 ISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGI 392

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P PN   +  ++    + GR ++A +    + ++G       F+ + DG
Sbjct: 393 PRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDG 441



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 143/355 (40%), Gaps = 36/355 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M      MK   +  +    +++I+ + K G++D A+ + ++         V  Y++L+ 
Sbjct: 275 MMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLIS 334

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--- 117
           ALC +     A     +MI  G  P+   Y  L+  +C+ G + +A+E + EM + G   
Sbjct: 335 ALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPR 394

Query: 118 -----FNPPVR-----GR-----------------------DLLVQGLLNAGYLESAKQM 144
                FN  V      GR                       + L+ G    G +  A  +
Sbjct: 395 PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSV 454

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           ++ MI  G   D  T+N+L+    KSG ++  + ++  +    +     TY I++  + +
Sbjct: 455 LDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFR 514

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           AG    A ++LH ++  G       Y  I+KG+ R    D+A   F ++       N   
Sbjct: 515 AGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITT 574

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +I       R  EA +    +++ GL P +  + ++   L   G  + A+ +
Sbjct: 575 LNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNM 629



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 60/135 (44%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +VS  T ++I++   ++   D A+ +F K    N +  +   N+++ ++  V+    A  
Sbjct: 534 TVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKD 593

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   +   G VP+  TY I++      G + EA      M   G  P  R  +  ++ LL
Sbjct: 594 LFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLL 653

Query: 134 NAGYLESAKQMVNKM 148
             G +  A   ++K+
Sbjct: 654 EKGEIVKAGNYMSKV 668



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 2/161 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T++  +I++   + G    A ++ ++         +  YN +L  LC       A 
Sbjct: 498 IKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAI 557

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + +++       +  T   ++N+  +  +  EA++    +SD G  P      ++++ L
Sbjct: 558 VMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNL 617

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           L  G +E A  M + M K G        N  I T+ + GE+
Sbjct: 618 LKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKGEI 658


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 154/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I  F K G +D     +N+         V+ YNS++ ALC+ +    A  ++  M
Sbjct: 14  SYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 73

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +PD  TY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 74  VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 133

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY---YSVCKLGLCADVSTY 195
             A+++ + M K+G   D+ T+ +L++     G +   VEM+     + + G+  +   +
Sbjct: 134 TEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 190

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            IL+ A +K   ++EA  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 191 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMID 250

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  P+  VY  LI       ++ +A    +EM + G+   +  F+ + D   +C +  +
Sbjct: 251 EGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDS--HCKEGRV 308

Query: 316 AEKIELLEVSLR 327
            E ++L ++ +R
Sbjct: 309 IESVKLFDLMVR 320



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 133/275 (48%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y++++    +       Y+    M+ K   P+  TY  ++ A C +  + +A
Sbjct: 7   DCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKA 66

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P     + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 67  MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDY 126

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +++ S+ K GL  D++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 127 LCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 186

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ ++    ++ + ++A   FS+M+ +G  PN   Y  +I +  + GR  +A  Y  
Sbjct: 187 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFE 246

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           +M + GL P S  ++ +   L    K + AE++ L
Sbjct: 247 QMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFL 281



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 5/305 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           + T   M    +S +  T + II    K   VD A+EV             + YNS++  
Sbjct: 32  YSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 91

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A   +++M   G  PD  TY  L++  C +G+  EA++    M+ +G  P 
Sbjct: 92  FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPD 151

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +     L+QG    G L     +++ M++ G   +   F+ L+    K  +VE  + ++ 
Sbjct: 152 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 211

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + GL  +  TY  +I  + K+G +++A      ++++G +P   +Y  +I  +    
Sbjct: 212 KMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFD 271

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +++ A   F EM  +G   +   +  +I    + GR +E+      M  +G+ P     D
Sbjct: 272 KWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFDLMVRIGVKP-----D 326

Query: 302 LVTDG 306
           ++T G
Sbjct: 327 IITLG 331


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 141/281 (50%), Gaps = 2/281 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   K G V  A+E+  +   F C    + +N L+  LC  K       ++RR+
Sbjct: 236 SFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRL 295

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  TY  +++ +C +G+M +A     +M   G +P V   ++L+ G   AG 
Sbjct: 296 QRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGN 355

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + SA  +  +MI +  + D+ TF+SLI+  C+ G+++  ++++  + +  +  +  T+ I
Sbjct: 356 MGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCI 415

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I    K     EA   L  + +     P   +Y P+I  + + G+ D+A     EM+ K
Sbjct: 416 IIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEK 475

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           G  P++  YT+LI      GR  EA  +  +M E G +P S
Sbjct: 476 GCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDS 516



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 141/316 (44%), Gaps = 5/316 (1%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC-VLLYNSLLFALCEVKLFH 69
           +  S+     + +++ F  HG V +AV +F            V  +N ++  +C+V    
Sbjct: 192 FGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQ 251

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPPVRGRDLL 128
            A  L+ RM   G  PD  T+ ILVN  C + ++ + +E L+ +   G   P V     +
Sbjct: 252 KALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSV 311

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G   AG +E A  + N M+  G   ++ T+N LI    K+G +   V +Y  +     
Sbjct: 312 ISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRC 371

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV T+  LI    + G +D+A ++   + +   +P    +  II    ++ +  +A  
Sbjct: 372 LPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALH 431

Query: 249 FFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           F  +M ++    P   +Y  +I +  +GG+  EA   L+EM E G  P    + ++  G 
Sbjct: 432 FLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIG- 490

Query: 308 KNCGKHDLAEKIELLE 323
            +C K  +AE +    
Sbjct: 491 -HCMKGRIAEAVTFFH 505



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 119/300 (39%), Gaps = 38/300 (12%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK- 116
           L  A C     H   AL     +    P   +Y  +++  C SG+  +A +   +M+D+ 
Sbjct: 98  LRHAPCASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQS 157

Query: 117 GFNPPVR-----------------------------------GRDLLVQGLLNAGYLESA 141
           G+ P  R                                     + L+   +  G ++ A
Sbjct: 158 GYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDA 217

Query: 142 KQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
             +    I+ G +  D+ +FN +I+ +CK G+V+  +E+   + + G   D  T+ IL+ 
Sbjct: 218 VALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNILVN 277

Query: 201 AVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            + +A  + +   +L  L  DG   P    Y  +I G  + G+ +DA   +++M   G  
Sbjct: 278 GLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTS 337

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           PN   Y +LI   G+ G    A     +M      P    F  + DG   CG+ D A KI
Sbjct: 338 PNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKI 397



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 1/224 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G +++A+ V+N   A      V+ YN L+    +      A A+ ++M
Sbjct: 307 TYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQM 366

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +  +PD  T++ L++ +C  G++ +A +   EM+     P      +++         
Sbjct: 367 ILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRS 426

Query: 139 ESAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A   + KM ++         +N +I+ +CK G+V+    +   + + G   D  TY I
Sbjct: 427 GEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTI 486

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           LI      G I EA    H +VE G  P   +    I  + + G
Sbjct: 487 LIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLLKSG 530


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  120 bits (302), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 142/311 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  E+M       +  + + +I  F + G +D A+E+F +     C   V  Y  L+ A
Sbjct: 245 YKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAA 304

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CEV     A      M+  G  P+  TY +L++ +C  GKM E  E L  M +KG    
Sbjct: 305 FCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSS 364

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+ G    G +E A  +++ M       +  T+N LI   C+   ++  + +  
Sbjct: 365 VVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLN 424

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  L  ++ TY  LI  + KA ++D A+RL H +++DG  P    +   I  + + G
Sbjct: 425 KMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMG 484

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + + A   F  +K K    N  +YT LI    +  +F +A      M   G  P S  F+
Sbjct: 485 KVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFN 544

Query: 302 LVTDGLKNCGK 312
           ++ DGL+  GK
Sbjct: 545 VLLDGLRKEGK 555



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 147/333 (44%), Gaps = 35/333 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G +D  +E+ +          V+ +N+L+   C+  +   A  ++  M
Sbjct: 332 TYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSM 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P+ RTY  L+  +C    M  A   L +M +   +P +   + L+ GL  A  +
Sbjct: 392 KLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVV 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV--------------- 183
           +SA ++ + MIK GFV D  TF + I+ +CK G+VE   +++ S+               
Sbjct: 452 DSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTAL 511

Query: 184 ----CKLGLCADVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
               CK    +D                  T+ +L+  + K G +++A  L+  + +   
Sbjct: 512 IDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDA 571

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +I+ + R   FD A  F  +M   G  PN   YT  I    R GR +EA  
Sbjct: 572 KPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEE 631

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            +V++ E G+   S  +D++ +     G+ D A
Sbjct: 632 MVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSA 664



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 139/344 (40%), Gaps = 26/344 (7%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+   LM         +T    I+   K G V+ A +VF      + +    LY +L+  
Sbjct: 455 WRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDG 514

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+ + F  A+ L +RM+ +G  P+  T+ +L++     GK+ +A   +  M      P 
Sbjct: 515 YCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPT 574

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L++ +L     + A   +++MI  G   ++ T+ + I+  C+ G +    EM  
Sbjct: 575 VHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVV 634

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK------ 235
            + + G+  D   Y +L+ A    G +D AF +L  + + G +P    Y+ ++K      
Sbjct: 635 KIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEK 694

Query: 236 --------------------GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
                                +++   F+     F +M  +G  PN   Y+ LI    + 
Sbjct: 695 YNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKV 754

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
                A      M E G++P     + +       G H+ A ++
Sbjct: 755 EHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRL 798



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 133/303 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + L+  +  S+S  + + +     + GL+D    +F        +  ++ +N+++ A C+
Sbjct: 143 LNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCK 202

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A A    +++ GF  D  TY  L+  +C   ++ +A +  + M  +G       
Sbjct: 203 IGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVS 262

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G ++ A ++  +M + G   D+ T+  L+   C+ G+    ++ +  + 
Sbjct: 263 YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMV 322

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V TY +LI    K G +DE   +L  ++E G       +  +I G  +RG  +
Sbjct: 323 ENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMME 382

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA C    MK+    PN   Y  LI    R      A   L +M E  L+P    ++ + 
Sbjct: 383 DAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLI 442

Query: 305 DGL 307
            GL
Sbjct: 443 HGL 445



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 138/312 (44%), Gaps = 27/312 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++M  ++   +  T +++IEE  +    D A    ++  +  CQ  V+ Y + + A C 
Sbjct: 563 VDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCR 622

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++ ++  +G + D   Y +LVNA+   G++  A   L  M D G  P  + 
Sbjct: 623 QGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQT 682

Query: 125 RDLLVQGLLNAGY--------------------------LESAKQMVNKMIKQGFVLDLE 158
             +L++ L+   Y                           E    +  KM++QG V ++ 
Sbjct: 683 YSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVN 742

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T++ LI+ +CK   +     ++  + + G+    + +  L+ +  K GM +EA RLL ++
Sbjct: 743 TYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSM 802

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E  H      Y  ++ G+F +G  + A   F  +   G+  +  V+ +L+    R G +
Sbjct: 803 MEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKG-Y 861

Query: 279 VEAANYLVEMTE 290
           V+  + L ++ E
Sbjct: 862 VDECSQLRDIME 873



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 97/238 (40%)

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
           H A  ++  +    F     +Y  L       G + E     ++M + G  P +   + +
Sbjct: 137 HEARFVLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTM 196

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V      G +  AK     ++K GF  D  T+ SLI   CK  E+    +++  + + G 
Sbjct: 197 VNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGC 256

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +  +Y  LI    + G IDEA  L   + EDG  P    Y  ++      G+  +A  
Sbjct: 257 LRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALK 316

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           FF EM   G  PN   YT+LI    + G+  E    L  M E GL      F+ + DG
Sbjct: 317 FFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDG 374



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 100/263 (38%), Gaps = 54/263 (20%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-------GFVLDLET---------- 159
           GF   V     L+  L+  G+L +A+ + N MIK         FVL+L T          
Sbjct: 98  GFIHTVHSYQPLLFILVRNGFLRAAENVRNSMIKSCVSSHEARFVLNLLTHHEFSLSVTS 157

Query: 160 -----------------------------------FNSLIETICKSGEVEFCVEMYYSVC 184
                                              FN+++   CK G V      +  + 
Sbjct: 158 YNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLM 217

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G C D  TY  LI    K   + +A+++   + ++G       Y  +I G    G+ D
Sbjct: 218 KFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKID 277

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F +MK  G  P+ P YT+L+      G+  EA  +  EM E G+ P    + ++ 
Sbjct: 278 EALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLI 337

Query: 305 DGLKNCGKHDLAEKIELLEVSLR 327
           D     GK D  E +E+L   L 
Sbjct: 338 DYFCKVGKMD--EGMEMLSTMLE 358



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 26/209 (12%)

Query: 16  SPQTLS-----LIIEEFGKHGL----------VDNA-----------VEVFNKCTAFNCQ 49
           S QT S     LI E++ K G+          VDNA             +F K     C 
Sbjct: 679 SRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCV 738

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
             V  Y+ L+  LC+V+    A+ L   M   G  P +  +  L+++ C  G   EA   
Sbjct: 739 PNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRL 798

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L  M +      +    LLV GL   G  E A+++   ++  G+  D   +  L++ + +
Sbjct: 799 LDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVR 858

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            G V+ C ++   + K G      T+ +L
Sbjct: 859 KGYVDECSQLRDIMEKTGCRLHSDTHTML 887



 Score = 45.1 bits (105), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 54/114 (47%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++NSLL + C++ +   A  L+  M+    +    +Y +LV      G   +A+E  + +
Sbjct: 778 IHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSL 837

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              G+N       +L+ GL+  GY++   Q+ + M K G  L  +T   L + +
Sbjct: 838 LSCGYNYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTGCRLHSDTHTMLSQEL 891


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 134/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +   + YN+L+     + +    + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N      KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   + + GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +    +Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLN 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 126/270 (46%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 144 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAM 203

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 204 LASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 263

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+ ++   G KP    Y  +
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTL 323

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +  VYT LI+   + GR V+A   L EM  +GL
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+ +  +LL+
Sbjct: 384 NPDTGTYTMIINEF--CKKGDVWKGSKLLK 411



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + +MS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 119/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G++D    + +   A   Q  V  Y+ L+  L + 
Sbjct: 166 DAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 SKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  +++ M ++G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G  P    Y  II    ++G    
Sbjct: 346 ENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 20/287 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FV----------PDKRTYAILVNA 96
           Y +++  LC  ++F  A +L++ ++ RKG       F            D   ++ L+ A
Sbjct: 22  YCTMIHFLCTHQMFSEAKSLLQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITA 81

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +     P      +++ L+   Y +       ++++ G+   
Sbjct: 82  YLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPAS 141

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL     +Y  L+    + G++DE FRL  
Sbjct: 142 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKS 201

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T LI    + G
Sbjct: 202 AMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNG 261

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           R   A     +M    L P    ++ +  GL  C K DL +  +L++
Sbjct: 262 RVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLID 306



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/301 (19%), Positives = 113/301 (37%), Gaps = 37/301 (12%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P     + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G                                   +  DV TY +LI
Sbjct: 195 EGFRLKSAMLASG-----------------------------------VQPDVYTYSVLI 219

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +SK   +D+A  L   ++  G  P    +  +I G  + G+ D A   + +M  +   
Sbjct: 220 NGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    + G   +A + + +M+  GL P    +  + DG   C + DL    
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGC--CKEGDLDSAF 337

Query: 320 E 320
           E
Sbjct: 338 E 338


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 4/326 (1%)

Query: 5   IELMKPYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + K   L   P+ +S  +II+   K+ LV+ AV++F    +      V+ YNSL++ +
Sbjct: 230 VWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGM 289

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C    +  A  L + M+     PD  T++ILV+A C  G + EA     +M      P +
Sbjct: 290 CNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDI 349

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G+  +   + +  ++N+M+ +    D+ TF+  ++  CK G V     +   
Sbjct: 350 VTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINL 409

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  +V TY  L+        +DEA ++   +V  G  P    Y  +IKG  +  +
Sbjct: 410 MIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSER 469

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A   F EM  KG  PN   +T LI+   + GR   A     +M   G  P    +  
Sbjct: 470 IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYST 529

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLRS 328
           +  G   C    L E + L E   +S
Sbjct: 530 LLSGF--CKHGHLDEALALFEALKKS 553



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 139/298 (46%), Gaps = 4/298 (1%)

Query: 2   WKTIEL----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK   +    M  +N+     T S++++   K G+V  A+ VF K      +  ++ Y+S
Sbjct: 295 WKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSS 354

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  +C+  L+  +  L+  M+ +   PD  T++I V+ +C  G + EAQ  +  M ++G
Sbjct: 355 LIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERG 414

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G      ++ A+++ + M+ +G   D+ ++N LI+  CKS  ++   
Sbjct: 415 LRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAK 474

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +++  +   GL  +  T+  LI  + +AG    A  L   +   G  P    Y+ ++ G 
Sbjct: 475 QLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGF 534

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            + G  D+A   F  +K     PN  +  +L+    + G+  +A      ++   L P
Sbjct: 535 CKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLSIEELQP 592



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 148/350 (42%), Gaps = 37/350 (10%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L   P   T + +I      G +  A+E  +   +   Q  V  +  ++  LC+
Sbjct: 162 LGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCK 221

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   +++M+     P+  +Y+I++++ C +  + EA +    M   G +P V  
Sbjct: 222 IGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVT 281

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY---- 180
            + L+ G+ N+G  + A  +  +M++     D+ TF+ L++ +CK G V   + ++    
Sbjct: 282 YNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMI 341

Query: 181 ---------------YSVCKLGLCA----------------DVSTYKILIPAVSKAGMID 209
                          + VCK  L                  DV T+ I +    K GM+ 
Sbjct: 342 QIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVS 401

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  +++ ++E G +P    Y  ++ G     Q D+A   F  M  KG  P+   Y +LI
Sbjct: 402 EAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILI 461

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               +  R  EA     EM+  GLTP S     +  GL   G+   A+++
Sbjct: 462 KGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKEL 511



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 126/272 (46%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+ V ++ K   F     V     L+  LC + L    ++++ ++ + GF P   T+  L
Sbjct: 121 DSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTL 180

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N  C  G++ EA E L  +  +G+ P V    ++V GL   G   +A   + KM++   
Sbjct: 181 INGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDC 240

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             ++ +++ +I+++CK+  V   V+++Y +  +G+   V TY  LI  +  +G   +A  
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI 300

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++E   KP    ++ ++  + + G   +A   F +M      P+   Y+ LI    
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVC 360

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           +   + E++  L EM    + P    F +  D
Sbjct: 361 KSSLWKESSTLLNEMLSRNIRPDVVTFSIWVD 392



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 142/312 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + +S S  TL+++I       LV     V  K      +  ++ +N+L+  LC    
Sbjct: 130 MEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGR 189

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  ++ +G+ P   T+ ++VN  C  GK   A  ++++M +    P V    +
Sbjct: 190 IVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSI 249

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  +   M   G    + T+NSLI  +C SG+ +    ++  + +  
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN 309

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV T+ IL+ A+ K G++ EA  +   +++   +P    Y+ +I G+ +   + ++ 
Sbjct: 310 MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESS 369

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +EM  +   P+   +++ + +  + G   EA + +  M E GL P    ++ + DG 
Sbjct: 370 TLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGY 429

Query: 308 KNCGKHDLAEKI 319
               + D A K+
Sbjct: 430 CLHSQMDEARKV 441



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 3/192 (1%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A    N+M+       +  FN L+  + +    +  V +Y  +   G+   V T  I
Sbjct: 85  FDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTI 144

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  +    ++   F +L  + + G KP    +  +I G+   G+  +A      +  +G
Sbjct: 145 LINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRG 204

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           + P    +TM++    + G+   A  ++ +M E+   P    + ++ D L  C    + E
Sbjct: 205 YQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSL--CKNRLVNE 262

Query: 318 KIELLEVSLRSV 329
            ++L    +RS+
Sbjct: 263 AVDLF-YHMRSI 273


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 141/279 (50%), Gaps = 2/279 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   + G    A+E+  + T F C    + +N L+  LC  K  +  + ++RR+
Sbjct: 217 SFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRL 276

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  TY  +++ +C +GKM +A     +M + G  P     ++L+ G   A  
Sbjct: 277 QRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALD 336

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +ESA +M  ++I +    D+ TF+SLI+  C+ G+++    ++  +    +  +V T+ I
Sbjct: 337 MESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSI 396

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I ++ K     EA  +L  L +     P   +Y P+I  + + G+ D+A    ++MK K
Sbjct: 397 IIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEK 456

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  P++  YT+LI      GR  EA     +M E G  P
Sbjct: 457 GCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRP 495



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%), Gaps = 3/292 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG-FVPDKRT 89
           GL+D A  +  K +   C      YN LL +L        A AL    I+ G + PD  +
Sbjct: 158 GLLDAASTLLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWS 217

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +++   C  G  ++A E ++ M++ G +P     ++LV GL  A  +    +++ ++ 
Sbjct: 218 FNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQ 277

Query: 150 KQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + G  + +  T+ S+I   CK+G++E  + +Y  + + G   +  TY +LI    KA  +
Sbjct: 278 RDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDM 337

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A R+   L+     P    ++ +I G  R GQ DDA   + EM +    PN   ++++
Sbjct: 338 ESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSII 397

Query: 269 ITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    +  R  EA + L E+     + P +  ++ V D L   GK D A  I
Sbjct: 398 IHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLI 449



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 38/273 (13%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           P +++Y  ++   C SG+ R+A +   +M D+ G+ P       +     NAG L++A  
Sbjct: 106 PSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAST 165

Query: 144 -------------------MVNKMIKQG-----------------FVLDLETFNSLIETI 167
                              ++N +I  G                 +  D+ +FN +I+ +
Sbjct: 166 LLTKGSRLGCCIEPYAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGV 225

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPF 226
           C+ G  +  +E+   + + G   D  T+ IL+  + +A  +++   +L  L  DG   P 
Sbjct: 226 CRMGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPN 285

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  +I G  + G+ +DA   +++M   G  PN   Y +LI   G+      A     
Sbjct: 286 AVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYR 345

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           ++      P    F  + DG   CG+ D A++I
Sbjct: 346 QLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRI 378



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ + + G +D+A  ++ +    + Q  V  ++ ++ +LC+      A  ++R +
Sbjct: 358 TFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILREL 417

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R    P    Y  +++  C  GK+ EA   + +M +KG +P      +L+ G    G 
Sbjct: 418 NMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGR 477

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A  + +KM++ G   D  T NS +  + K+G
Sbjct: 478 IPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAG 511



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 6/163 (3%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLL 59
           +WK + L   +++  +  T S+II    K      A+++  +     +      +YN ++
Sbjct: 378 IWKEMGL---HHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFIYNPVI 434

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             LC+      A  ++  M  KG  PDK TY IL+   C  G++ EA     +M + G  
Sbjct: 435 DILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCR 494

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           P     +  V  +L AG      Q++  +I  G  L  +  +S
Sbjct: 495 PDNITVNSFVSCVLKAGMPNEVDQIM--LIASGHGLASQKVSS 535


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +N ++   C+      AY ++  ++  G VP+  TY  L++ +C SG + EA +  +
Sbjct: 175 IVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 112 EMS--DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            +S  D    P V   + L+ GL  A  LE A ++V +M  +    D  T+ +L++ +CK
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G       ++  + + G    V TY  L+ A  KAG + +A +++ ++V  G  P  + 
Sbjct: 295 QGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +++G+F  G+   A  FF ++  +  PP   VY+ L+  C +     EA  Y VEM 
Sbjct: 355 YTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEML 414

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHD 314
           +  L P      L+ + L   G+ D
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 38/313 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK--------------------CTA------------F 46
           T S++I    K G +  AVE +N+                    C A             
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGI 64

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMRE 105
            C   V+  N L+   CE++L   A  L   M +    VP+  TY  ++  +C   ++ +
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLI 164
           A++ L+E S    +  V     + +G   A  ++ A Q++  M+ K+    D+  +N +I
Sbjct: 125 ARQLLEESS--CCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVII 182

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              CK+G V    EM  ++  +G   +  TY  LI    K+G + EA +L   L    H 
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 225 PFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P++  +  +I G+ +  + + AF    +MK +    +   YT L+    + GR  E +
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 283 NYLVEMTEMGLTP 295
               EM   G  P
Sbjct: 303 RVFEEMLREGCNP 315



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ MK  +L     T + +++   K G       VF +     C   V+ Y +L+ A
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHA 326

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A  +IR M+ KG  PD  TY +L+     +GK+R A EF +++  +   P 
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPC 386

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                 LV+G   A  ++ A +   +M+ +    D  T   L+E +CK G  +
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 40/233 (17%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+ GL  AG L  A +  N+M+++  V +L   N L+ ++C++G+++  + ++  +   
Sbjct: 8   VLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAIFRGI--- 64

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIK---------- 235
                V T  ILI    +  ++D+A  L H + ++    P  + Y  IIK          
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 236 -----------------------GMFRRGQFDDAFCFFSEM-KIKGHPPNRPVYTMLITM 271
                                  G  +  + D+A+    +M + K   P+   + ++I  
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             + GR  EA   L  +  MG  P +  +  + DG   C   +L+E ++L +V
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF--CKSGNLSEALQLFKV 235


>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
 gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 136/272 (50%), Gaps = 1/272 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRRMIRK 81
           +I  FGK G +++A+++F++  +  C   V+ YN+++ AL E K     A +   +M   
Sbjct: 312 LINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN 371

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 372 GVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAA 431

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+ + K G     V+++  + K+G   DV  Y  L+  
Sbjct: 432 NELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSG 491

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +AGMI+EAF  L  + E+G  P  + +  I+ G+ R G+ + A   F +MK     P+
Sbjct: 492 LVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPD 551

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              Y  ++    R G F EAA  + EM   G 
Sbjct: 552 AVSYNTILGSLSRSGMFEEAAKLMREMGSRGF 583



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 152/333 (45%), Gaps = 6/333 (1%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     + P  LS +++  GK  +V+ A+ VF +  +  C+     YNS++
Sbjct: 114 MWKMIQEMVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMI 173

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L +       + L   M  +G   PD  TY++LV+A+   G+   A     EM   G 
Sbjct: 174 LMLMQEGHHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGL 233

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           +P  +    L+     +G  E A  +V +M  +G    + T+  LI+ + KSG VE    
Sbjct: 234 HPTAKIYTTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYS 292

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++ ++ K G   DV     LI    KAG +++A +L   +      P    Y  +IK +F
Sbjct: 293 VFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALF 352

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             +    +A  +F +MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 353 ESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCP 412

Query: 298 RCFDLVTDGLKNCGKHDLAEK--IELLEVSLRS 328
             +  + + L    +++ A +  +EL E   RS
Sbjct: 413 AAYCSLINALGKAKRYEAANELFLELKENCGRS 445



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 112/240 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   ++ S  T S++I+ F K   V+ A+ +  +        C   Y SL+ AL + 
Sbjct: 366 EKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKA 425

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L   +         R YA+++      G+  EA +   EM   G NP V   
Sbjct: 426 KRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAY 485

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL+ AG +E A   +  M + G   DL + N ++  + ++G  E   EM+  +  
Sbjct: 486 NALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKD 545

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D  +Y  ++ ++S++GM +EA +L+  +   G +     Y+ I++ + +  + D+
Sbjct: 546 SLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGKVDEDDE 605



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 121/273 (44%), Gaps = 1/273 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V  Y  L+  L +      AY++   M++ G  PD      L+N +  +G++ +A 
Sbjct: 267 CAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDAL 326

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIET 166
           +   +M      P V   + +++ L  +    S A     KM   G      T++ LI+ 
Sbjct: 327 KLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDG 386

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK+  VE  + +   + + G     + Y  LI A+ KA   + A  L   L E+  +  
Sbjct: 387 FCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGRSS 446

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +YA +IK + + G+  +A   F+EMK  G  P+   Y  L++   R G   EA + L 
Sbjct: 447 ARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALR 506

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            M E G TP     +++ +GL   G+ + A ++
Sbjct: 507 TMEENGCTPDLNSHNIILNGLARTGRPEQATEM 539



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 95/226 (42%), Gaps = 19/226 (8%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV--QGLLNAGY 137
           R+ F  D  TY  L+      G   E  + +QEM        VR    ++    L     
Sbjct: 88  RRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQEM--------VRSPTCVIGPADLSEVVK 139

Query: 138 LESAKQMVNKMIKQGFVLD-------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLC- 189
           +    +MVNK +   + +          T+NS+I  + + G  E   E+Y+ +C  G C 
Sbjct: 140 ILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGDCF 199

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY +L+ A  K G  D A RL   +  +G  P   +Y  ++   F+ G  + A   
Sbjct: 200 PDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGD-EKALGL 258

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             EMK KG  P    YT LI   G+ GR  +A +  + M + G  P
Sbjct: 259 VQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKP 304


>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
 gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
          Length = 448

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 128/275 (46%), Gaps = 1/275 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    KH   D+A++VF+          V +Y SLL A C  +   GAY L   M
Sbjct: 151 TYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEM 210

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G+ P   TY +L+   C+ G+   A +    M  +G  P       L+ G   AG +
Sbjct: 211 IQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRI 270

Query: 139 ESAKQMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             AK +  ++++ +   LD   +N LIE +C++ +VE  +E+   +   G    + TY  
Sbjct: 271 TEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNA 330

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    KA  +D+A +L   + E G  P   +Y+  I G+ + G+ ++A  FF +   +G
Sbjct: 331 LIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERG 390

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             P+   Y  LI       R  EA     EM E G
Sbjct: 391 CVPDNVTYNALIRGLFGANRMDEAHRLYREMGERG 425



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 3/269 (1%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y +L+  LC+      A  +   M+ K  VP+   Y  L+ A C + K+  A     E
Sbjct: 150 MTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVE 209

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G+ P      LL++ L N G    A  + + M  +G V D  T+ SLI   C +G 
Sbjct: 210 MIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGR 269

Query: 173 VEFCVEMYYSVCKLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           +     ++  V + G  A  D   Y +LI  + +A  ++EA  +   +V+ G  P    Y
Sbjct: 270 ITEAKVLFKEVLE-GEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTY 328

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G F+  + D A   F  M+ KG  PN  +Y+  I    + G+  EA  +  +  E
Sbjct: 329 NALIMGFFKANEVDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVE 388

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  P +  ++ +  GL    + D A ++
Sbjct: 389 RGCVPDNVTYNALIRGLFGANRMDEAHRL 417



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 36/271 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+  L ++     A A++  M+ +G+ PD  T  +LV+ +C   ++ E  E  QE+ 
Sbjct: 13  YNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELE 72

Query: 115 ------------------------DKGFN-----------PPVRGRDLLVQGLLNAGYLE 139
                                   D GF            P V     ++  L+  G   
Sbjct: 73  SNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTR 132

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++V +MIK+  V D  T+ +LI  +CK    +  ++++  + +  +  +V  Y  L+
Sbjct: 133 EASEVVGEMIKKS-VPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDVYTSLL 191

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A  +   +D A+RL   +++ G+ P  S Y  +++ +   G+   A+   S M+ +GH 
Sbjct: 192 AAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHV 251

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           P+   Y  LI  C   GR  EA     E+ E
Sbjct: 252 PDENTYASLIYGCCMAGRITEAKVLFKEVLE 282



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/300 (22%), Positives = 131/300 (43%), Gaps = 4/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  L++++F +   V    E+F +  +      +L YN++L AL     F G +      
Sbjct: 47  TCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIA 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G +P    Y  +++    +GK REA E + EM  K   P       L+  L      
Sbjct: 107 VGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMTYTALISVLCKHNRA 165

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ + M+++  V +++ + SL+   C++ +++    ++  + + G     STY +L
Sbjct: 166 DDAMKVFDIMVEKEIVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLL 225

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G    A+ +  ++   GH P  + YA +I G    G+  +A   F E+ ++G 
Sbjct: 226 LRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEV-LEGE 284

Query: 259 PP--NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +  +Y +LI    R  +  EA      M + G  P  + ++ +  G     + D A
Sbjct: 285 KAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKA 344



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 4/251 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G VPD+ +Y +LV        + +A+  L  M  +G++P V    LLV        
Sbjct: 1   MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +    ++  ++   G  + +  +N++++ +  SG+ +   +        G    V  YK 
Sbjct: 61  VGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + K G   EA  ++  +++    P    Y  +I  + +  + DDA   F  M  K 
Sbjct: 121 MLDCLIKTGKTREASEVVGEMIKK-SVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKE 179

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN  VYT L+    R  +   A    VEM + G  P +  + L+   L N G+  LA 
Sbjct: 180 IVPNVDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAY 239

Query: 318 KIELLEVSLRS 328
            I     S+RS
Sbjct: 240 DI---HSSMRS 247



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 72/151 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++     +     +++IE   +   V+ A+EV        C   +  YN+L+    + 
Sbjct: 279 EVLEGEKAQLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKA 338

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L R M  KGF P+   Y+  ++  C  GK+ EA EF Q+  ++G  P     
Sbjct: 339 NEVDKALQLFRAMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTY 398

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           + L++GL  A  ++ A ++  +M ++G++ D
Sbjct: 399 NALIRGLFGANRMDEAHRLYREMGERGYIAD 429



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+  LC       A  +   M+ KG +P  +TY  L+  +  + ++ +A +  + M
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAM 351

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            +KGF+P        + GL   G +  A +   + +++G V D  T+N+LI  +  +  +
Sbjct: 352 EEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRM 411

Query: 174 EFCVEMYYSVCKLGLCADVS 193
           +    +Y  + + G  AD S
Sbjct: 412 DEAHRLYREMGERGYIADRS 431


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 140/314 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +   ++K   L VS    + ++    K G VD A E++ +      Q  V   N ++ AL
Sbjct: 309 EAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINAL 368

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +      + +  M  KG  PD  TY  L+NA+C  G + EA E +  MS KG  P V
Sbjct: 369 CKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCV 428

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++ GL   G    AK ++++M+K G   D  T+N L+   C++  +     ++  
Sbjct: 429 FTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDE 488

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  D+ ++  LI  +SK G +D+A +   ++   G  P   +Y  +I G  R G 
Sbjct: 489 MPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGV 548

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             +A     EM  +G   +   Y  ++    +     EA     EMTE G+ P    F  
Sbjct: 549 MSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTT 608

Query: 303 VTDGLKNCGKHDLA 316
           + +G    G  + A
Sbjct: 609 LINGYXKDGNMNKA 622



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+      +++I  F ++G++  A++V ++     C   V+ YN++L  LC+ K+
Sbjct: 524 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKM 583

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G  PD  T+  L+N +   G M +A    + M  +   P V   + 
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 643

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      +E   ++ N MI +    +  ++  LI   C  G V     ++  + + G
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             A + T   ++    +AG   +A   L N++  G  P    Y  +I G  +    D AF
Sbjct: 704 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 763

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              ++M+  G  P+   Y +++    R GR  EA   +++M E G+ P    +  + +G
Sbjct: 764 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 822



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G ++ AV +F      N +  V+ YN+L+   C+         L   M
Sbjct: 605 TFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 664

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  +Y IL+N +C+ G + EA     EM +KGF   +   + +V+G   AG  
Sbjct: 665 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 724

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + ++ M+ +G V D  T+N+LI    K   ++    +   +   GL  DV TY ++
Sbjct: 725 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 784

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G + EA  ++  ++E G  P  S Y  +I G   +    +AF    EM  +G 
Sbjct: 785 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 844

Query: 259 PPN 261
            P+
Sbjct: 845 VPD 847



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 131/289 (45%), Gaps = 17/289 (5%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-----------------DKRT 89
           N +  +  +++++  L   +    A A+I RM+RK  V                  +   
Sbjct: 231 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 290

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +LV  +  + K+RE  E  + +  KG    +   + L+ GL+  G+++ A ++  +++
Sbjct: 291 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 350

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G  +++ T N +I  +CK+ ++E        + + G+  DV TY  LI A  + G+++
Sbjct: 351 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 410

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EAF L+ ++   G KP    Y  II G+ + G++  A     EM   G  P+   Y +L+
Sbjct: 411 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 470

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             C R    ++A     EM   G+ P    F  +   L   G  D A K
Sbjct: 471 VECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 519



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 125/293 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GL++ A E+ +  +    + CV  YN+++  LC+   +  A  ++  M
Sbjct: 395 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 454

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  PD  TY IL+   C +  M +A+    EM  +G  P +     L+  L   G L
Sbjct: 455 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 514

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +    M   G   D   +  LI   C++G +   +++   + + G   DV TY  +
Sbjct: 515 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTI 574

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K  M+ EA  L   + E G  P    +  +I G  + G  + A   F  M  +  
Sbjct: 575 LNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNL 634

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P+   Y  LI    +G    +      +M    + P    + ++ +G  N G
Sbjct: 635 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 687



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 39/347 (11%)

Query: 13  LSVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           + +SP T +   L++E      ++D A  +F++  +      ++ +++L+  L +     
Sbjct: 457 IGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 515

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------------------------- 103
            A    R M   G  PD   Y IL+  +C +G M                          
Sbjct: 516 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTIL 575

Query: 104 ---------REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                     EA E   EM+++G  P       L+ G    G +  A  +   MI++   
Sbjct: 576 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLK 635

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+N+LI+  CK  E+E   E++  +    +  +  +Y ILI      G + EAFRL
Sbjct: 636 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 695

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +VE G +        I+KG  R G    A  F S M +KG  P+   Y  LI    +
Sbjct: 696 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 755

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 A   + +M   GL P    ++++ +G    G+   AE I L
Sbjct: 756 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 802



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 6/311 (1%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKC--TAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           P   ++I+    K G+  + VE+      T  NC    L+++ L+    + +        
Sbjct: 253 PDAQAVILRMVRKSGV--SRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEA 310

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R +  KG          L+      G +  A E  QE+   G    V   ++++  L  
Sbjct: 311 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 370

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              +E+ K  ++ M ++G   D+ T+N+LI   C+ G +E   E+  S+   GL   V T
Sbjct: 371 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 430

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  +I  + K G    A  +L  +++ G  P  + Y  ++    R     DA   F EM 
Sbjct: 431 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMP 490

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  P+   ++ LI +  + G   +A  Y  +M   GL P +  + ++  G    G   
Sbjct: 491 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 550

Query: 315 LAEKI--ELLE 323
            A K+  E+LE
Sbjct: 551 EALKVRDEMLE 561



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+M   NL     T + +I+ F K   ++   E++N   +       + Y  L+   C +
Sbjct: 627 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 686

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ L   M+ KGF     T   +V  +C +G   +A EFL  M  KG  P     
Sbjct: 687 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 746

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G +    ++ A  +VNKM   G + D+ T+N ++    + G ++    +   + +
Sbjct: 747 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 806

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            G+  D STY  LI        + EAFR+   +++ G  P
Sbjct: 807 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 41/337 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +IE F + G +D A+E+F + T    Q  +  + +L+  LC+         ++++M
Sbjct: 201 SYAALIEGFCEAGRIDEALELFREMT----QPDMYTHAALVKGLCDAGRGEEGLCMLQKM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV------------RGR- 125
              G+ P  R YA LV+ WC   K  EA++ L EM D G  P V             GR 
Sbjct: 257 KELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRM 316

Query: 126 ----------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                                 + +VQG  NAG +  A  ++++M + G   D+ T+N L
Sbjct: 317 SGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C  G +     +   +   GL AD  TY +LI A+ K G +DEA  L   L   G 
Sbjct: 377 IRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAA 282
           +P    +  +I G+ + G+FD A  F   M   G+ P+   Y+  I  +C   G   E  
Sbjct: 437 RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGS-QEGL 495

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            ++ EM +  + P +  + +V + L N   + LA +I
Sbjct: 496 FFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRI 532



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 141/315 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK      + +  + +++ + +    + A ++ N+        CV+    ++ A C 
Sbjct: 253 LQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCR 312

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                GA  +   M  KG  P+  TY  +V  +C++GK+ +A   L +M + G  P V  
Sbjct: 313 EGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVT 372

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +LL++G    G++ SA +++  M   G   D  T+N LI+ +CK+G+V+    ++  + 
Sbjct: 373 YNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  +  T+  +I  + KAG  D A   L N++  G+ P    Y+P I+ + +     
Sbjct: 433 YRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQ 492

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +   F  EM  K   P+   YT++I        +  A     +M   G +P    +    
Sbjct: 493 EGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSV 552

Query: 305 DGLKNCGKHDLAEKI 319
               N G+ D AE +
Sbjct: 553 RAYCNEGRLDEAENV 567



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 127/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  + + G +  AV VF       C+  V  YN+++   C     + A AL+ +M
Sbjct: 302 TCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY +L+   C  G +  A   L+ M   G        ++L+  L   G +
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKV 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + +  +G   +  TFN++I  +CK+G+ +       ++   G   D  TY   
Sbjct: 422 DEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPF 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K     E    +  +++   KP    Y  +I  +F    +  A   + +M  +G 
Sbjct: 482 IENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGC 541

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT  +      GR  EA N + EM +      +  ++ + DG  + G+ D A  
Sbjct: 542 SPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVT 601

Query: 319 I 319
           I
Sbjct: 602 I 602



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 131/298 (43%), Gaps = 4/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + +   ++ A ++F K       Q  + Y +L+   CE      A  L R M
Sbjct: 166 TFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREM 225

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD  T+A LV   C +G+  E    LQ+M + G+ P  R    LV         
Sbjct: 226 TQ----PDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKA 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++++N+M   G +  + T   ++   C+ G +   V ++ S+   G   +V TY  +
Sbjct: 282 EEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAI 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     AG + +A  LL  + E G +P    Y  +I+G    G    AF     M+  G 
Sbjct: 342 VQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGL 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++  Y +LI    + G+  EA +    +   G+ P S  F+ V +GL   GK D+A
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVA 459



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 113/252 (44%), Gaps = 4/252 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+ ALC       A   +  M+R G+ PD  T+  L+  +C + ++  A +   +M 
Sbjct: 132 YNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMP 191

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +GF+        L++G   AG ++ A ++  +M +     D+ T  +L++ +C +G  E
Sbjct: 192 FRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQP----DMYTHAALVKGLCDAGRGE 247

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + M   + +LG       Y  L+    +    +EA ++L+ + + G  P       ++
Sbjct: 248 EGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVV 307

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               R G+   A   F  M+ KG  PN   Y  ++      G+  +A   L +M E G+ 
Sbjct: 308 NAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVE 367

Query: 295 PISRCFDLVTDG 306
           P    ++L+  G
Sbjct: 368 PDVVTYNLLIRG 379



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 4/229 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            P   TY  L+ A C    +R AQ +L  M   G+ P     + L+ G      LE A  
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHD 185

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  KM  +GF  D  ++ +LIE  C++G ++  +E++  + +     D+ T+  L+  + 
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLC 241

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            AG  +E   +L  + E G +P    YA ++    R  + ++A    +EM   G  P   
Sbjct: 242 DAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVV 301

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             T+++    R GR   A      M   G  P    ++ +  G  N GK
Sbjct: 302 TCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGK 350



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 133/369 (36%), Gaps = 51/369 (13%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L+    T +++I+   K G VD A  +F+       +   + +N+++  
Sbjct: 390 FRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+   F  A   +  MI  G+ PD  TY+  +   C +   +E   F+ EM  K   P 
Sbjct: 450 LCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPS 509

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++  L N      A ++  +M+ QG   D+ T+ + +   C  G ++    +  
Sbjct: 510 TVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVT 569

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP---------------- 225
            + K     D   Y  LI   +  G  D A  +L ++      P                
Sbjct: 570 EMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPNHFTFFILLRHLLQRR 629

Query: 226 --------------------------------FPS---LYAPIIKGMFRRGQFDDAFCFF 250
                                            PS    Y  I++G     + D+     
Sbjct: 630 LAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLV 689

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           S MK +  P N  +Y  L+    +   + +A   L  M   G  P    +  +  GL   
Sbjct: 690 SLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAE 749

Query: 311 GKHDLAEKI 319
           G+ D A++I
Sbjct: 750 GQADRAKEI 758



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 1   MWKTIEL---------MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WKTIEL         MK  ++  S +T   I+E F +   +D    + +     N    
Sbjct: 641 VWKTIELADVFELFELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLN 700

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +YN+L+   C+++++  A+AL+  MI  GF+P+   Y  L++   + G+   A+E  +
Sbjct: 701 EDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFR 760

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
               K +N       +++ G +  G+ +    M++ + +       ET+  L E +
Sbjct: 761 SSRWKEYNTDEIVWKVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEEL 816



 Score = 37.7 bits (86), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/144 (21%), Positives = 57/144 (39%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S+L    E +      +L+  M  +    ++  Y  LVN +C      +A   L  M 
Sbjct: 669 YLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMI 728

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P +     L+ GL   G  + AK++      + +  D   +  +I+   + G  +
Sbjct: 729 GHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKGHAD 788

Query: 175 FCVEMYYSVCKLGLCADVSTYKIL 198
            C +M   + ++       TY +L
Sbjct: 789 MCHDMISMLEQMKCKPSDETYAML 812


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 32/306 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K GLV++AVE+F++      +   + YNSL+  LC    +  A  L+R M+ + 
Sbjct: 180 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 239

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  T+  +++ +   GK  EA +  +EM+ +  +P V   + L+ GL   G ++ AK
Sbjct: 240 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 299

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM++ M+ +G + D+ T+N+LI   CKS  V+   +++  + + GL  D  TY  +I   
Sbjct: 300 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 359

Query: 203 SKAGM--------------------------------IDEAFRLLHNLVEDGHKPFPSLY 230
            +AG                                 +++A  L  N+ +   +   + Y
Sbjct: 360 FQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTY 419

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I GM + G  +DA+  F  +  KG  P+   YT +I+   R  ++ ++     +M E
Sbjct: 420 NIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQE 479

Query: 291 MGLTPI 296
            GL P+
Sbjct: 480 DGLLPL 485



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S ++ +  K    D  + +F+          +  YN ++  LC    F  A +++ +M+
Sbjct: 72  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 131

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           + G+ PD  T + L+N +C   ++ +A + + +M + GF P V   + ++ G    G + 
Sbjct: 132 KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 191

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++ ++M + G   D  T+NSL+  +C SG       +   +    +  +V T+  +I
Sbjct: 192 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G   EA +L   +      P    Y  +I G+   G+ D+A      M  KG  
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 311

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    +  R  E      EM + GL   +  ++ +  G    G+ D A++I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 3/251 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+S +I  F +   V +A+++ +K      +  V++YN+++   C++ L + A  L  RM
Sbjct: 141 TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 200

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G   D  TY  LV   C SG+  +A   +++M  +   P V     ++   +  G  
Sbjct: 201 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 260

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M ++    D+ T+NSLI  +C  G V+   +M   +   G   DV TY  L
Sbjct: 261 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 320

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +DE  +L   + + G       Y  II+G F+ G+ D A   FS M  +  
Sbjct: 321 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR-- 378

Query: 259 PPNRPVYTMLI 269
            PN   Y++L+
Sbjct: 379 -PNIRTYSILL 388



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 3/208 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     HG VD A ++ +      C   V+ YN+L+   C+ K       L R M
Sbjct: 281 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 340

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G V D  TY  ++  +  +G+   AQE    M  +   P +R   +L+ GL     +
Sbjct: 341 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRV 397

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M K    LD+ T+N +I  +CK G VE   +++ S+   GL  DV +Y  +
Sbjct: 398 EKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 457

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           I    +    D++  L   + EDG  P 
Sbjct: 458 ISGFCRKRQWDKSDLLYRKMQEDGLLPL 485



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 117/268 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ ++ +L  + + K +    +L   M   G   D  +Y I++N  C   +   A   + 
Sbjct: 69  IVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVG 128

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G+ P V     L+ G      +  A  +V+KM + GF  D+  +N++I+  CK G
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   VE++  + + G+ AD  TY  L+  +  +G   +A RL+ ++V     P    + 
Sbjct: 189 LVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFT 248

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    + G+F +A   + EM  +   P+   Y  LI      GR  EA   L  M   
Sbjct: 249 AVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTK 308

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G  P    ++ + +G     + D   K+
Sbjct: 309 GCLPDVVTYNTLINGFCKSKRVDEGTKL 336



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/103 (19%), Positives = 48/103 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T S+++     +  V+ A+ +F        +  +  YN ++  +C++     A+ L R 
Sbjct: 382 RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 441

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  KG  PD  +Y  +++ +C   +  ++    ++M + G  P
Sbjct: 442 LSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 134/277 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E+ + G +  A +VF++ +        + YN L+  LC       A  L+ RM
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R    P  RT+ +L++  C++G++ +A  +L+++   G  P +   ++L+ G    G  
Sbjct: 274 KRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNS 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++V +M  +G      T+  L+ T  +S ++E   EM++ + ++GL  D  TY +L
Sbjct: 334 SVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVL 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + EA +L  ++VE   +P   +Y  +I G  +      A  F  EM   G 
Sbjct: 394 IHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGV 453

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   Y   I +  + G+ +EA   L EMTE GL P
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKP 490



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 126/303 (41%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +  + I+ F ++G V    E+  +         V +Y  L+ A C       A  +  RM
Sbjct: 109 SFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRM 168

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   ++  Y I++N +   G  ++  E  Q+M   G  P +   + L+      G L
Sbjct: 169 DDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKL 228

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ +++ K+G   +  T+N LI  +C+ G+V     +   + +  +     T+ +L
Sbjct: 229 SLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNML 288

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A   L  L   G  P    Y  +I G  + G          EM+ +G 
Sbjct: 289 MDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGI 348

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  YT+L+    R     +A      M  +GL P    + ++  GL  C K ++ E 
Sbjct: 349 SPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL--CIKGNMVEA 406

Query: 319 IEL 321
            +L
Sbjct: 407 SKL 409



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 103/245 (42%), Gaps = 35/245 (14%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV----------------------- 122
           D  ++ I + A+C +G + +  E L +M   G +P V                       
Sbjct: 106 DVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMF 165

Query: 123 -RGRDL-----------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            R  DL           ++ G    GY +   ++  KM   G + +L T+NSLI   C+ 
Sbjct: 166 SRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRD 225

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G++    +++  + K G+  +  TY ILI  + + G + +A  LL  +      P    +
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTF 285

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G+   GQ D A  +  ++K+ G  P    Y +LI+   + G     +  + EM +
Sbjct: 286 NMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMED 345

Query: 291 MGLTP 295
            G++P
Sbjct: 346 RGISP 350



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 102/229 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK  +++ + +T +++++     G +D A+    K         ++ YN L+    +
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V        L+R M  +G  P K TY IL+N +  S  + +A E    M   G  P    
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHT 389

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+ GL   G +  A ++   M++     +   +N++I   CK       ++    + 
Sbjct: 390 YGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMV 449

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           K G+  +V++Y   I  + K G   EA RLL  + E G KP  SL + +
Sbjct: 450 KNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 36/235 (15%)

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE-------- 174
           R RD ++     +  LE +      M+ +G      +FN+ ++ + KSG ++        
Sbjct: 39  RPRDAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTE 98

Query: 175 ------------------FC--------VEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                             FC         E+   +  +G+  +V  Y ILI A  + G I
Sbjct: 99  YLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDI 158

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+A  +   + + G      +Y  +I G F++G   D F  + +MK+ G  PN   Y  L
Sbjct: 159 DQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSL 218

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           IT   R G+   A     E+++ G+   +  ++++  GL  C K  +++   LLE
Sbjct: 219 ITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGL--CRKGQVSKAEGLLE 271



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 54/120 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++   LMK   L     T  ++I      G +  A +++      + Q   ++YN+++  
Sbjct: 372 YEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMING 431

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+    + A   +  M++ G  P+  +Y   +   C  GK  EA+  L+EM++ G  PP
Sbjct: 432 YCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPP 491


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 129/265 (48%), Gaps = 2/265 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +N ++   C+      AY ++  ++  G VP+  TY  L++ +C SG + EA +  +
Sbjct: 175 IVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFK 234

Query: 112 EMS--DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            +S  D    P V   + L+ GL  A  LE A ++V +M  +    D  T+ +L++ +CK
Sbjct: 235 VLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCK 294

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G       ++  + + G    V TY  L+ A  KAG + +A +++ ++V  G  P  + 
Sbjct: 295 QGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTT 354

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +++G+F  G+   A  FF ++  +  PP   VY+ L+  C +     EA  Y VEM 
Sbjct: 355 YTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEML 414

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHD 314
           +  L P      L+ + L   G+ D
Sbjct: 415 DRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 38/313 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK--------------------CTA------------F 46
           T S++I    K G +  AVE +N+                    C A             
Sbjct: 5   TFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGI 64

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMRE 105
            C   V+  N L+   CE++L   A  L   M +    VP+  TY  ++  +C   ++ +
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLI 164
           A++ L+E S    +  V     + +G   A  ++ A Q++  M+ K+    D+  +N +I
Sbjct: 125 ARQLLEESS--CCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVII 182

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              CK+G V    EM  ++  +G   +  TY  LI    K+G + EA +L   L    H 
Sbjct: 183 HGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHH 242

Query: 225 PFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P++  +  +I G+ +  + + AF    +MK +    +   YT L+    + GR  E +
Sbjct: 243 AEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVS 302

Query: 283 NYLVEMTEMGLTP 295
               EM   G  P
Sbjct: 303 RVFEEMLREGCNP 315



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ MK  +L     T + +++   K G       VF +     C   V+ Y +L+ A
Sbjct: 267 FELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHA 326

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A  +IR M+ KG  PD  TY +L+     +GK+R A EF +++  +   P 
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPC 386

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                 LV+G   A  ++ A +   +M+ +    D  T   L+E +CK G  +
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 40/233 (17%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+ GL  AG L  A +  N+M+++  V +L   N L+ ++C++G ++  + ++  +   
Sbjct: 8   VLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAIFRGI--- 64

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIK---------- 235
                V T  ILI    +  ++D+A  L H + ++    P  + Y  IIK          
Sbjct: 65  QCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQ 124

Query: 236 -----------------------GMFRRGQFDDAFCFFSEM-KIKGHPPNRPVYTMLITM 271
                                  G  +  + D+A+    +M + K   P+   + ++I  
Sbjct: 125 ARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHG 184

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             + GR  EA   L  +  MG  P +  +  + DG   C   +L+E ++L +V
Sbjct: 185 FCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF--CKSGNLSEALQLFKV 235


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 133/274 (48%), Gaps = 5/274 (1%)

Query: 13  LSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + + P  +  + II+   K+G VDNA+ +FN+   +  +  V++Y SL+  LC    +  
Sbjct: 170 MGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRD 229

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+R M+++   PD  T+  L++A+   GK+ +A+E   EM      P +     L+ 
Sbjct: 230 ADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLIN 289

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+QM   M  +G   D+  + SLI   CK  +VE  ++++Y + + GL  
Sbjct: 290 GLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTG 349

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI      G  + A  +  ++V  G  P    Y  ++  +   G+ + A   F
Sbjct: 350 NTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIF 409

Query: 251 SEMK---IKGHPPNRPVYTMLITMCGRGGRFVEA 281
            +M+   I G PPN   Y +L+      G+  +A
Sbjct: 410 EDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA 443



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F     ++ A+ + N+      +  V++Y +++ +LC+      A +L  +M
Sbjct: 143 TFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQM 202

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD   Y  LVN  C+SG+ R+A   L+ M  +   P V   + L+   +  G L
Sbjct: 203 ENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKL 262

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++ N+MI+     ++ T+ SLI  +C  G ++   +M+Y +   G   DV  Y  L
Sbjct: 263 LDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSL 322

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +++A ++ + + + G       Y  +I+G    G+ + A   F  M  +G 
Sbjct: 323 INGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGV 382

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM---GLTPISRCFDLVTDGLKNCGKHDL 315
           PPN   Y +L+      G+  +A     +M +    G+ P  R ++++  GL   GK + 
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEK 442

Query: 316 A 316
           A
Sbjct: 443 A 443



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 121/265 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +  + SL+   C       A +++ +M+  G  PD   Y  ++++ C +G +  A     
Sbjct: 141 IFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFN 200

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M + G  P V     LV GL N+G    A  ++  M+K+    D+ TFN+LI+   K G
Sbjct: 201 QMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEG 260

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    E+Y  + ++ +  ++ TY  LI  +   G +DEA ++ + +   G  P    Y 
Sbjct: 261 KLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYT 320

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +  + +DA   F EM  KG   N   YT LI   G  G+   A      M   
Sbjct: 321 SLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSR 380

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G+ P  R ++++   L   GK + A
Sbjct: 381 GVPPNIRTYNVLLHCLCYNGKVNKA 405



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 3/279 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G + +A E++N+    +    +  Y SL+  LC       A  +   M
Sbjct: 248 TFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLM 307

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD   Y  L+N +C   K+ +A +   EMS KG          L+QG    G  
Sbjct: 308 ETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKP 367

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL---GLCADVSTY 195
             A+++   M+ +G   ++ T+N L+  +C +G+V   + ++  + K    G+  ++ TY
Sbjct: 368 NVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTY 427

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            +L+  +   G +++A  +  ++ +         Y  II+GM + G+  DA   F  +  
Sbjct: 428 NVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPS 487

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG  PN   YT +I+   R G  +EA     +M E G++
Sbjct: 488 KGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 124/264 (46%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N L+   C+      A + + ++++ GF PD  T+  L+N +C   ++ EA   + +M +
Sbjct: 110 NLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVE 169

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P V     ++  L   G++++A  + N+M   G   D+  + SL+  +C SG    
Sbjct: 170 MGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRD 229

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              +   + K  +  DV T+  LI A  K G + +A  L + +++    P    Y  +I 
Sbjct: 230 ADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLIN 289

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+   G+ D+A   F  M+ KG  P+   YT LI    +  +  +A     EM++ GLT 
Sbjct: 290 GLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTG 349

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
            +  +  +  G    GK ++A+++
Sbjct: 350 NTITYTTLIQGFGLVGKPNVAQEV 373



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 130/293 (44%), Gaps = 1/293 (0%)

Query: 28  GKHGLVDN-AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           G H L  N A+++F+          ++ +  LL  + ++K F     L + +   G   D
Sbjct: 46  GLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSND 105

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             T  +L+N +C S +   A  FL ++   GF P +     L+ G      +E A  MVN
Sbjct: 106 LYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVN 165

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M++ G   D+  + ++I+++CK+G V+  + ++  +   G+  DV  Y  L+  +  +G
Sbjct: 166 QMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSG 225

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
              +A  LL  +++   KP    +  +I    + G+  DA   ++EM      PN   YT
Sbjct: 226 RWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYT 285

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            LI      GR  EA      M   G  P    +  + +G   C K + A KI
Sbjct: 286 SLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKI 338


>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
          Length = 540

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 39/356 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+  +  +S  T  +I+  + +   V  AVE F K ++F  +  +  YN L+ 
Sbjct: 173 VWSLVEAMRCRS-CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID 231

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAW---------------------- 97
            L + K    A+A+ + M RKG F+PD +TY +L+  W                      
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291

Query: 98  -------------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
                        C SGK  EA +   EM + G  P      +L+ GL +   L+ A + 
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKY 351

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
                + GF +++ T N++I   C++ E     +M   + K G+  +  TY I++  + K
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF-RRGQFDDAFCFFSEMKIKGHPPNRP 263
           +  I+EA+ L   +  DG +P  + Y  ++ GMF    + D A   + +MK KG  P   
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMV-GMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +++ LI       R  EA  Y  EM + G+ P  + F  + + L   G+  LA+++
Sbjct: 471 MFSALINGLCFDNRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEV 526



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 123/279 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     V+ +      +  V+ Y  L+ A C+      A  +   
Sbjct: 260 KTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHE 319

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ Q   + GF   V   + ++     A  
Sbjct: 320 MEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +MV++M K G   +  T++ ++  + KS ++E    ++  + + G   +++TY +
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++        +D A ++   + E G  P   +++ +I G+    + ++A  +F EM  KG
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKG 499

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             P   +++ L      GGR   A      +  +  TP+
Sbjct: 500 IRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRTPM 538



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 69/147 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M+   +  + +T  +I+    K   ++ A  +F +     C+  +  Y  ++  
Sbjct: 384 FKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGM 443

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C  +    A  + ++M  KG +P    ++ L+N  C   ++ EA  + QEM DKG  PP
Sbjct: 444 FCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLEEACVYFQEMLDKGIRPP 503

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +    L + L+  G +  A+++  ++
Sbjct: 504 GQLFSNLKEALVEGGRITLAQEVTQRL 530



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 10/197 (5%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV- 183
           ++L   G+L   +   A++      +QGF    E F++LIE + K  +      +  ++ 
Sbjct: 128 KNLSNAGILALAFFRWAER------QQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMR 181

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           C+  L  D  T+KI++   ++A  + EA      +   G K   S Y  +I  + +  Q 
Sbjct: 182 CRSCLSKD--TFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQV 239

Query: 244 DDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             A   F EMK KG   P+   YT+L+   G     +       EM + G+ P    + +
Sbjct: 240 KKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGM 299

Query: 303 VTDGLKNCGKHDLAEKI 319
           +       GK D A K+
Sbjct: 300 LISAFCKSGKCDEAIKV 316


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 133/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+    +  +  V+ YN+L+     +   +  + L   M+
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 263 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLI 322

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 323 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L +M   G  P    ++++ +G
Sbjct: 383 PDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 130/310 (41%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +     + 
Sbjct: 73  FSGLITTYLESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIX 132

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G       + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L 
Sbjct: 133 XXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLN 192

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 193 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLI 252

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 253 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 312

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            ++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 313 XDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 373 LREMLSVGLK 382



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 271

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG          L+ G    G L
Sbjct: 272 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDL 331

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 332 DAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMI 391

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL ++  +GH P    Y  ++ G
Sbjct: 392 INEFCKKGDVWKGSKLLKDMQRNGHAPSVVTYNVLMNG 429



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D A E   +    N +   + Y +L+  LC+
Sbjct: 303 IDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQ 362

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  PD  TY +++N +C  G + +  + L++M   G  P V  
Sbjct: 363 EGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVT 422

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 423 YNVLMNG 429


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 138/291 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +D A++  N    + CQ  V+ +N +L ++C    +  A  L+  M
Sbjct: 281 TYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADM 340

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG  P   T+ IL+N  C    +  A + L++M   G  P     + L+ G      +
Sbjct: 341 LRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKM 400

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+ +G   D+ T+N+L+  +CK G+ +  VE+   +   G    + TY  +
Sbjct: 401 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTV 460

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K G  + A  LL  +   G KP    Y+ +++G+   G+ D+A   F +M+    
Sbjct: 461 IDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSI 520

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y  ++    +  +   A ++L  M E G  P    + ++ +G+ +
Sbjct: 521 KPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGIAD 571



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 147/305 (48%), Gaps = 5/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  + K G +D A++V  +    +    V+ YN++L +LC+      A  ++ R 
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLER---MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQ 235

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   PD  TY IL+ A C+   + +A + L EM  KG  P V   ++L+ G+   G L
Sbjct: 236 MQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +N M   G   ++ T N ++ ++C +G       +   + + G    V T+ IL
Sbjct: 296 DEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNIL 355

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +  ++  A  +L  + + G  P    Y P++ G  +  + D A  +   M  +G 
Sbjct: 356 INFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 415

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+T   + G+   A   L +++  G +P+   ++ V DGL   GK + A  
Sbjct: 416 YPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAA- 474

Query: 319 IELLE 323
            ELLE
Sbjct: 475 -ELLE 478



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 131/250 (52%), Gaps = 7/250 (2%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           + RMI +G +PD      L+  +C SGK R+A   ++ + + G  P V   ++L+ G   
Sbjct: 130 LERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCK 189

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           +G ++ A Q++ +M       D+ T+N+++ ++C SG+++  +E+     +     DV T
Sbjct: 190 SGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVIT 246

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ILI A      + +A +LL  + + G KP    Y  +I G+ + G+ D+A  F + M 
Sbjct: 247 YTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMP 306

Query: 255 IKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + G  PN   + +++ +MC   GR+++A   L +M   G +P    F+++ + L  C K 
Sbjct: 307 LYGCQPNVITHNIILRSMCST-GRWMDAERLLADMLRKGCSPSVVTFNILINFL--CRKR 363

Query: 314 DLAEKIELLE 323
            L   I++LE
Sbjct: 364 LLGRAIDVLE 373



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 141/304 (46%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE       V  A+++ ++     C+  V+ YN L+  +C+      A   +  M
Sbjct: 246 TYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM 305

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  T+ I++ + CS+G+  +A+  L +M  KG +P V   ++L+  L     L
Sbjct: 306 PLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLL 365

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ KM K G + +  ++N L+   C+  +++  +E    +   G   D+ TY  L
Sbjct: 366 GRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTL 425

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K G  D A  +L+ L   G  P    Y  +I G+ + G+ + A     EM+ KG 
Sbjct: 426 LTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL 485

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+   G  G+  EA     +M  + + P +  ++ +  GL  C     +  
Sbjct: 486 KPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL--CKAQQTSRA 543

Query: 319 IELL 322
           I+ L
Sbjct: 544 IDFL 547



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 140/309 (45%), Gaps = 2/309 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +SV+P   T + I+      G +  A+EV ++     C   V+ Y  L+ A C       
Sbjct: 203 MSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQ 262

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  M +KG  PD  TY +L+N  C  G++ EA +FL  M   G  P V   +++++
Sbjct: 263 AMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILR 322

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            + + G    A++++  M+++G    + TFN LI  +C+   +   +++   + K G   
Sbjct: 323 SMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMP 382

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  +Y  L+    +   +D A   L  +V  G  P    Y  ++  + + G+ D A    
Sbjct: 383 NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEIL 442

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +++  KG  P    Y  +I    + G+   AA  L EM   GL P    +  +  GL   
Sbjct: 443 NQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCE 502

Query: 311 GKHDLAEKI 319
           GK D A KI
Sbjct: 503 GKVDEAIKI 511



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 133/273 (48%), Gaps = 5/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+   SL+   C       A  ++  +   G VPD  TY +L+  +C SG++ +A + L+
Sbjct: 142 VIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLE 201

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            MS     P V   + +++ L ++G L+ A +++++ +++    D+ T+  LIE  C   
Sbjct: 202 RMS---VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDS 258

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   +++   + K G   DV TY +LI  + K G +DEA + L+N+   G +P    + 
Sbjct: 259 GVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHN 318

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I++ M   G++ DA    ++M  KG  P+   + +LI    R      A + L +M + 
Sbjct: 319 IILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKH 378

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G  P S  ++ +  G   C +  +   IE LE+
Sbjct: 379 GCMPNSLSYNPLLHGF--CQEKKMDRAIEYLEI 409



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 80/181 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G  D AVE+ N+ ++  C   ++ YN+++  L +V     A  L+  M
Sbjct: 421 TYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEM 480

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  PD  TY+ L+      GK+ EA +   +M      P     + ++ GL  A   
Sbjct: 481 RRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQT 540

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A   +  M+++G      T+  LIE I   G  E  +E+   +C  G     S  ++ 
Sbjct: 541 SRAIDFLAYMVEKGCKPTKATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQVA 600

Query: 199 I 199
           +
Sbjct: 601 V 601



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 5/197 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ ++ L+  G LE   + + +MI QG + D+    SLI   C+SG+      +   +  
Sbjct: 111 NIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILEN 170

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV TY +LI    K+G ID+A ++L  +      P    Y  I++ +   G+  +
Sbjct: 171 SGAVPDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKE 227

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A         +   P+   YT+LI          +A   L EM + G  P    ++++ +
Sbjct: 228 AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLIN 287

Query: 306 GLKNCGKHDLAEKIELL 322
           G+  C +  L E I+ L
Sbjct: 288 GI--CKEGRLDEAIKFL 302



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L     T S ++   G  G VD A+++F+     + +   + YN+++  LC+
Sbjct: 477 LEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
            +    A   +  M+ KG  P K TY IL+
Sbjct: 537 AQQTSRAIDFLAYMVEKGCKPTKATYTILI 566


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 135/291 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +   LS ++E   + G V +A ++ N+         + +YN+L+ +LC+   F  A  L 
Sbjct: 330 TEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLF 389

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M  KG   +  TY+IL++++C  GK+  A  FL +M   G    V   + L+ G    
Sbjct: 390 KEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKL 449

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L +A    ++MI +G    + ++ SLI   C  G++     +Y+ +   G+  +  T+
Sbjct: 450 GNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTF 509

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI A+ +A  + +AFRL   ++E    P    Y  +I+G  + G    AF   ++M  
Sbjct: 510 TTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQ 569

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           KG  P+   Y  LI+     GR  EA  ++ ++          C+  +  G
Sbjct: 570 KGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHG 620



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 135/333 (40%), Gaps = 40/333 (12%)

Query: 20  LSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           L++++     HGL  N     AVE+ N           + Y +L+  LC+V+ F     +
Sbjct: 259 LNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGV 318

Query: 75  IRRMIRKGFVPDKRT-----------------------------------YAILVNAWCS 99
           +  MI  GFVP +                                     Y  L+N+ C 
Sbjct: 319 MDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCK 378

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            GK  EA+   +EM +KG         +L+      G L++A   + KMI  G  + +  
Sbjct: 379 DGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYP 438

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +NSLI   CK G +   V  +  +   GL   V +Y  LI      G + EAFRL H + 
Sbjct: 439 YNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMT 498

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
             G  P    +  +I  +FR  +  DAF  F EM  +   PN   Y ++I    + G  V
Sbjct: 499 GKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +A   L +M + GL P +  +  +   L + G+
Sbjct: 559 KAFELLNQMVQKGLVPDTYTYRPLISSLCSTGR 591



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 132/304 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T S++I+ F + G +D A+    K      +  V  YNSL+   C++  
Sbjct: 392 MGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGN 451

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A +    MI KG  P   +Y  L++ +C+ GK+ EA     EM+ KG  P       
Sbjct: 452 LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTT 511

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L  A  +  A ++ ++M++Q  + +  T+N +IE  CK G      E+   + + G
Sbjct: 512 LISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKG 571

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D  TY+ LI ++   G + EA + + +L  +  K     Y+ ++ G  + G+  DA 
Sbjct: 572 LVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDAL 631

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM  +G   +   Y +LI    +          L  M +  L P    +  + DG 
Sbjct: 632 GVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGY 691

Query: 308 KNCG 311
              G
Sbjct: 692 SKAG 695



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++ +  T + +I    +   + +A  +F++    N     + YN ++   C+   
Sbjct: 497 MTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGN 556

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L+ +M++KG VPD  TY  L+++ CS+G++ EA++F+ ++  + F         
Sbjct: 557 TVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSA 616

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L  A  +  +M+K+G  +DL  +  LI+   K  +      +  ++    
Sbjct: 617 LLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQR 676

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  +I   SKAG + +AF +   ++++G  P    Y  +I  + + G  D A 
Sbjct: 677 LRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAE 736

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             + EM +    PN   Y   +    R G   +A     +M + GL   +  ++++  G 
Sbjct: 737 LLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGF 795

Query: 308 KNCGKHDLAEKI 319
              G+ + A K+
Sbjct: 796 CKLGRVEEATKL 807



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 132/293 (45%), Gaps = 1/293 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K I+ +   +  ++    S ++  + K G + +A+ V  +         ++ Y  L+   
Sbjct: 597 KFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGT 656

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + +     + L++ M  +   PDK  Y  +++ +  +G +++A      M D+G  P +
Sbjct: 657 IKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNI 716

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+  L  AG ++ A+ +  +M+      +  T+   ++ + + G +E  V+++  
Sbjct: 717 VTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHND 776

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K GL A+  +Y IL+    K G ++EA +LL  ++++   P    Y+ II    RRG 
Sbjct: 777 MLK-GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGN 835

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            D A  F+  M  KG  P+   Y  LI  C   G   +A     +M   G+ P
Sbjct: 836 LDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKP 888



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 138/325 (42%), Gaps = 3/325 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  + M   N+  +  T +++IE   K G    A E+ N+            Y  L+ +
Sbjct: 526 FRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISS 585

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A   I  + R+ F  ++  Y+ L++ +C  G++R+A    +EM  +G +  
Sbjct: 586 LCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMD 645

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +    +L+ G +      +   ++  M  Q    D   + S+I+   K+G V+    ++ 
Sbjct: 646 LVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWD 705

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   ++ TY  LI  + KAG++D+A  L   ++     P    Y   +  + R G
Sbjct: 706 IMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREG 765

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             + A    ++M +KG   N   Y +L+    + GR  EA   L EM +  + P   C  
Sbjct: 766 SMEKAVQLHNDM-LKGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFP--DCIT 822

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSL 326
             T   + C + +L   IE  +  L
Sbjct: 823 YSTIIYQCCRRGNLDGAIEFWDTML 847



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 1/216 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y S++    +      A+ +   MI +G  P+  TY  L+N  C +G M +A+   +E
Sbjct: 682 VIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKE 741

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P        +  L   G +E A Q+ N M+K G + +  ++N L+   CK G 
Sbjct: 742 MLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGR 800

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           VE   ++   +    +  D  TY  +I    + G +D A      ++  G KP    Y  
Sbjct: 801 VEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNF 860

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +I G    G+   AF    +M  +G  PN+  +  L
Sbjct: 861 LIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 1/186 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I E  K GL+D A  ++ +    N     + Y   L  L        A  L   M
Sbjct: 718 TYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDM 777

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG + +  +Y ILV  +C  G++ EA + L EM D    P       ++      G L
Sbjct: 778 L-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNL 836

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +  + M+ +G   D   +N LI   C +GE+    E+   + + G+  + +T+K L
Sbjct: 837 DGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896

Query: 199 IPAVSK 204
               S+
Sbjct: 897 SHGASR 902


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 151/345 (43%), Gaps = 38/345 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++  F + G  D A+ VF        +  +++YN+L+  LC+  L   A  L+  M
Sbjct: 437 TYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEM 496

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY +++N  C  G + +A   + +   KG  P +   + LV G      L
Sbjct: 497 AEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKL 556

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA ++VN+M  QG   D+ T+N+L+  +CK+ + E  +E++ ++ + G   ++ TY  +
Sbjct: 557 DSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTI 616

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC---------- 248
           I ++  +  ++EA  LL  +   G  P    +  +I G  + G  D A+           
Sbjct: 617 IESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYD 676

Query: 249 --------------------------FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
                                      FSEMK  G  P+   Y +LI    + G   +  
Sbjct: 677 VSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGY 736

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            +L+E  E G  P    F  V + L  C +H + E + ++ + ++
Sbjct: 737 KFLLENIEKGFIPSLTTFGRVLNCL--CVEHKVQEAVGIIHLMVQ 779



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 132/290 (45%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           +G+ G +  AV+ F +   FNC   V  YN+++  L E   F+ A+ +  RM  K    D
Sbjct: 165 YGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESD 224

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             TY I + ++C +G+   A   L+ M   G          +V G    G  + A+++ +
Sbjct: 225 VYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFD 284

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M++     D+ TFN L+  +CK G V     ++  V K G+C ++ T+ I I  + K G
Sbjct: 285 EMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEG 344

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D A RLL  +  +G +P    Y  +I G+ R+ +  +A     +M   G  PN   Y 
Sbjct: 345 SLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            +I    + G  V+A   L +    G  P    +  + +G    G  D A
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQA 454



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 118/262 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNS++   C+  +   A  +++  + KGF PD+ TY  LVN +C  G   +A    ++  
Sbjct: 403 YNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGL 462

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +   + L++GL   G +  A Q++N+M ++G   D+ T+N +I  +CK G + 
Sbjct: 463 GKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLS 522

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +       G   D+ TY  L+    +   +D A  L++ +   G  P    Y  ++
Sbjct: 523 DANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLL 582

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  + ++    F  M  KG  PN   Y  +I       +  EA + L EM   GLT
Sbjct: 583 NGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLT 642

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P    F  +  G    G  D A
Sbjct: 643 PDVVSFGTLITGFCKVGDLDGA 664



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I+   K G +D AV +    +    +  V+ YN+++  LC       A   + +M
Sbjct: 332 TFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKM 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GF P+  TY  +++ +C  G + +A   L++   KGF P       LV G    G  
Sbjct: 392 VNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDP 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +    + +G    +  +N+LI+ +C+ G +   +++   + + G   D+ TY ++
Sbjct: 452 DQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLI 511

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + +A  L+ + +  G  P    Y  ++ G  R+ + D A    + M  +G 
Sbjct: 512 INGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGM 571

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  L+    +  +  E       MTE G  P    ++ + + L  C    + E 
Sbjct: 572 TPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESL--CNSKKVNEA 629

Query: 319 IELL 322
           ++LL
Sbjct: 630 VDLL 633



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +     T ++ I+ F + G    A+ +        C    + Y +++    E   
Sbjct: 216 MKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGD 275

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M+     PD  T+  LV+A C  G + E++    ++  +G  P +   ++
Sbjct: 276 NDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNI 335

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +QGL   G L+ A +++  + ++G   D+ T+N++I  +C+   V    E  + +   G
Sbjct: 336 FIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG 395

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +  TY  +I    K GM+ +A R+L + V  G KP    Y  ++ G  + G  D A 
Sbjct: 396 FEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAM 455

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F +   KG  P+  VY  LI    + G  + A   + EM E G  P    ++L+ +GL
Sbjct: 456 AVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGL 515



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G V  +  +F+K         +  +N  +  LC+      A  L+  +
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  PD  TY  ++   C   ++ EA+E L +M + GF P     + ++ G    G +
Sbjct: 357 SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMV 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++   + +GF  D  T+ SL+   C+ G+ +  + ++      GL   +  Y  L
Sbjct: 417 VDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G+I  A +L++ + E G KP    Y  II G+ + G   DA     +   KG 
Sbjct: 477 IKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGC 536

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            P+   Y  L+    R  +   A   +  M   G+TP    ++ + +GL    K +
Sbjct: 537 IPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 105/245 (42%), Gaps = 6/245 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + IIE       V+ AV++  +  +      V+ + +L+   C+V    GAY L R M
Sbjct: 612 TYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGM 671

Query: 79  IRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            ++  V     TY I+++A+     M+ A     EM   G +P      +L+ G    G 
Sbjct: 672 EKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGN 731

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +    + + + I++GF+  L TF  ++  +C   +V+  V + + + +  +  D  T   
Sbjct: 732 VNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPD--TVNT 789

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD-DAFCFFSEMKIK 256
           +  A  K  +   A+  L++ V D  K       P    + R  +   D +CF+   ++ 
Sbjct: 790 IFEADKKGHITYHAYEFLYDGVRD--KKILKKKHPNWNSLRREPRSSADVWCFWFVSRMG 847

Query: 257 GHPPN 261
              PN
Sbjct: 848 AFKPN 852



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 71/301 (23%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD--------------------K 116
           +  ++GF     TY  ++      GK  E +  L EM                      K
Sbjct: 109 KKTKQGFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRK 168

Query: 117 G--------------FN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           G              FN  P V   + ++  L+  GY   A ++  +M  +    D+ T+
Sbjct: 169 GKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTY 228

Query: 161 NSLIETICKSGE--------------------VEFCV---------------EMYYSVCK 185
              I++ C++G                     V +C                E++  + +
Sbjct: 229 TIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLE 288

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             LC DV+T+  L+ A+ K G + E+ RL   +++ G  P    +   I+G+ + G  D 
Sbjct: 289 CCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDR 348

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      +  +G  P+   Y  +I    R  R VEA   L +M   G  P    ++ + D
Sbjct: 349 AVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIID 408

Query: 306 G 306
           G
Sbjct: 409 G 409



 Score = 47.4 bits (111), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 50/112 (44%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K Y++S +  T ++II  F +   +  A+ +F++     C      Y  L+   C+    
Sbjct: 673 KQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNV 732

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  Y  +   I KGF+P   T+  ++N  C   K++EA   +  M  K   P
Sbjct: 733 NQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL     + + +I  F + G +  A  + ++    N    ++ YN+L+  LC +     A
Sbjct: 372 NLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETA 431

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   MI +G  PD  TY +LVN  C  G M  A+EF  EM   G  P        + G
Sbjct: 432 LKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVG 491

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L  G    A ++  +M+ +GF  D+ T+N  +  +CK G +E   E+   + + G   D
Sbjct: 492 ELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPD 551

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY   + A  + G + E   + ++++  G  P    Y  +I      G+ D A  +F 
Sbjct: 552 HVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFL 611

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ KG  PN   Y +LI    +  +  +A  + +EM E G+ P    + ++ +   N G
Sbjct: 612 EMQEKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMG 671

Query: 312 KHDLAEKI 319
           K   A ++
Sbjct: 672 KWQEALRL 679



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 2/322 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +M  Y +  +  T + ++  F K G V  A+++  K     C    + +N L+  L +  
Sbjct: 227 MMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKG 286

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  LI+ M + G      TY  L+  +C  G + EA    +EM  +G +P V   +
Sbjct: 287 ELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHN 346

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A+Q ++ M+K+  + D+ ++N+LI   C+ G +     +   +   
Sbjct: 347 TIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFR 406

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            L  ++ TY  LI  + + G ++ A +L  +++  G  P    Y  ++ G  + G    A
Sbjct: 407 NLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMA 466

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             FF EM   G  P++  YT  I    + G   +A     EM   G  P    +++  +G
Sbjct: 467 KEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNG 526

Query: 307 LKNCGKHDLAEKIELLEVSLRS 328
           L  C   +L E  ELL+  +R 
Sbjct: 527 L--CKLGNLEEAGELLQKMIRD 546



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 133/312 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L VSP T + +I  + K GL+  A+ ++ +         V  +N++++  C+
Sbjct: 295 IQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCK 354

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A   +  M++K  +PD  +Y  L+  +C  G + EA   L E+  +  +  +  
Sbjct: 355 EGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVT 414

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL   G LE+A ++   MI +G   D+ T+  L+   CK G +    E +  + 
Sbjct: 415 YNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEML 474

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +GL  D   Y   I    K G   +AF+L   ++  G  P    Y   + G+ + G  +
Sbjct: 475 HVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLE 534

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M   GH P+   YT  +      G   E      +M   G TP    + ++ 
Sbjct: 535 EAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLI 594

Query: 305 DGLKNCGKHDLA 316
                 G+ D A
Sbjct: 595 HAHALNGRLDWA 606



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 123/280 (43%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T +++I    K G +  A  +  +      +     YN L+   C+  L   A AL 
Sbjct: 271 SEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALALW 330

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P   ++  ++  +C  GKM +A++ L +M  K   P +   + L+ G    
Sbjct: 331 EEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRL 390

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +  A  +++++  +    ++ T+N+LI+ +C+ G++E  +++   +   G+  DV TY
Sbjct: 391 GNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTY 450

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            +L+    K G +  A      ++  G  P    Y   I G  + G    AF    EM  
Sbjct: 451 TVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLT 510

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           KG PP+   Y + +    + G   EA   L +M   G  P
Sbjct: 511 KGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVP 550



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 123/273 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I++      L+  A+EV+     +  +  V  YN++L + C+      A  L+ +M  +G
Sbjct: 208 ILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERG 267

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P + T+ +L+N     G++++A+  +QEM+  G        + L+ G    G L  A 
Sbjct: 268 CYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEAL 327

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M+ +G    + + N+++   CK G++    +    + K  L  D+ +Y  LI   
Sbjct: 328 ALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGF 387

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G I EAF LL  L           Y  +I G+ R G  + A     +M  +G  P+ 
Sbjct: 388 CRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDV 447

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             YT+L+    + G  + A  +  EM  +GL P
Sbjct: 448 VTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAP 480



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 124/273 (45%), Gaps = 2/273 (0%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +L  L +  L   A  + R M   G  P   TY  +++++C  G+++ A + + +M +
Sbjct: 206 NRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQE 265

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P     ++L+ GL   G L+ AK ++ +M K G  +   T+N LI   CK G +  
Sbjct: 266 RGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVE 325

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            + ++  +   G+   V+++  ++    K G + +A + L ++++    P    Y  +I 
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  R G   +AF    E++ +    N   Y  LI    R G    A     +M   G+ P
Sbjct: 386 GFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHP 445

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
               + ++ +G    G   +A++   E+L V L
Sbjct: 446 DVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGL 478


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 132/289 (45%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A++VF+K      Q  V+ Y +L+  LC+ +    A  L   MI KG  PD  TY
Sbjct: 140 GKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTY 199

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++A C+  + +     L EM      P V   +++V  L   G +  A  +V+ MI+
Sbjct: 200 NSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQ 259

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D+ T+ +L++  C   E++  V+++  + + G   +V +Y  LI    K   ID+
Sbjct: 260 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDK 319

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L   +      P    Y+ +I G+   G+  DA   F+EM   G  PN   Y++L+ 
Sbjct: 320 AMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLD 379

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +  R  EA   L  +    L P  + +++  DG+   G  + A  +
Sbjct: 380 YLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDL 428



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 140/316 (44%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +     TL+++I  F     VD A+ V  K      Q     + +L+  LC V  
Sbjct: 82  MDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGK 141

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +  +M+ +GF P+  TY  L+N  C   ++ EA     EM  KG +P +   + 
Sbjct: 142 IGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNS 201

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L N    +    ++N+M+K   + ++ + N +++ +CK G+V    ++   + + G
Sbjct: 202 LIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGG 261

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV TY  L+        +DEA ++   +V +G       Y  +I G  +  + D A 
Sbjct: 262 VEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAM 321

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  +   PN   Y+ LI      GR  +A     EM   G  P    + ++ D L
Sbjct: 322 YLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYL 381

Query: 308 KNCGKHDLAEKIELLE 323
             C  H LAE + LL+
Sbjct: 382 --CKNHRLAEAMALLK 395



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 116/244 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D AV+VF+      C   V+ YN+L+   C+++    A  L   M R+  +P+  TY+ 
Sbjct: 282 MDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C  G++++A     EM   G  P +    +L+  L     L  A  ++  +    
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D++ +N  I+ +C++G++E   +++ ++   GL  DV T+ I+I  + K G++DEA 
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEAS 461

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L   + E+G       Y  I +G+ +  +   A     EM  +G   +     +L+ M 
Sbjct: 462 KLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKML 521

Query: 273 GRGG 276
              G
Sbjct: 522 SDDG 525



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 128/284 (45%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ +F++  A      +  YNSL+ ALC +  +     L+  M++   +P+  +  I+V+
Sbjct: 180 ALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVD 239

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C  GK+ EA + +  M   G  P V     L+ G      ++ A ++ + M++ G V 
Sbjct: 240 ALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVC 299

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           ++ ++N+LI   CK   ++  + ++  +C+  L  +  TY  LI  +   G + +A  L 
Sbjct: 300 NVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALF 359

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           + +V  G  P    Y+ ++  + +  +  +A      ++     P+  VY + I    R 
Sbjct: 360 NEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRA 419

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G    A +    +   GL P     +++  GL   G  D A K+
Sbjct: 420 GDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKL 463



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 5/304 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +L+++++   K G V  A +V +       +  V+ Y +L+   C       A  +   M
Sbjct: 233 SLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMM 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G V +  +Y  L+N +C   ++ +A    +EM  +   P       L+ GL + G L
Sbjct: 293 VRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRL 352

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + N+M+  G + +L T++ L++ +CK+  +   + +  ++    L  DV  Y I 
Sbjct: 353 QDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIA 412

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +AG ++ A  L  NL   G +P    +  +I+G+ +RG  D+A   F EM   G 
Sbjct: 413 IDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGC 472

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDLV----TDGLKNCGKH 313
             N   Y  +     +  +   A   L EM   G +  +S    LV     DGL    K 
Sbjct: 473 LRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQ 532

Query: 314 DLAE 317
            L E
Sbjct: 533 ILCE 536



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+  N ++ ALC+      A+ ++  MI+ G  PD  TYA L++  C   +M EA +   
Sbjct: 231 VVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD 290

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G    V   + L+ G      ++ A  +  +M +Q  + +  T+++LI  +C  G
Sbjct: 291 MMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVG 350

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  + ++  +   G   ++ TY IL+  + K   + EA  LL  +      P   +Y 
Sbjct: 351 RLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYN 410

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             I GM R G  + A   FS +  +G  P+   + ++I    + G   EA+    EM E 
Sbjct: 411 IAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDEN 470

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G       ++ +T GL    K   A  I+LLE
Sbjct: 471 GCLRNGCTYNTITQGLLQNNKTSRA--IQLLE 500



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/320 (18%), Positives = 131/320 (40%), Gaps = 41/320 (12%)

Query: 13  LSVSPQTLSLIIEEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           LS+ P  LS     F    L    +D+A+  F++    +    +  +  LL ++ ++K +
Sbjct: 13  LSLPPHFLSSSQNNFQSKSLHFNTLDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHY 72

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
               +L ++M   G  PD  T  I++N++C   +                          
Sbjct: 73  STVLSLSKKMDSFGIPPDVYTLTIVINSFCHLNR-------------------------- 106

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
                    ++ A  ++ K++K G   D  TF +L+  +C  G++   ++++  +   G 
Sbjct: 107 ---------VDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGF 157

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V TY  L+  + K   + EA  L   ++  G  P    Y  +I  +    ++     
Sbjct: 158 QPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTT 217

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EM      PN     +++    + G+  EA + +  M + G+ P    +  + DG  
Sbjct: 218 LLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG-- 275

Query: 309 NCGKHDLAEKIELLEVSLRS 328
           +C + ++ E +++ ++ +R+
Sbjct: 276 HCLRSEMDEAVKVFDMMVRN 295



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL    Q  ++ I+   + G ++ A ++F+       Q  V  +N ++  LC+  L   A
Sbjct: 401 NLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEA 460

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M   G + +  TY  +      + K   A + L+EM  +GF+  V    LLV+ 
Sbjct: 461 SKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKM 520

Query: 132 LLNAGYLESAKQMV 145
           L + G  +S KQ++
Sbjct: 521 LSDDGLDQSVKQIL 534



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           + P  L     T +++I    K GL+D A ++F +     C +    YN++   L +   
Sbjct: 432 LAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNK 491

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
              A  L+  M+ +GF  D  T A+LV      G  +  ++ L E
Sbjct: 492 TSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQILCE 536


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 32/306 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K GLV++AVE+F++      +   + YNSL+  LC    +  A  L+R M+ + 
Sbjct: 121 IIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRD 180

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  T+  +++ +   GK  EA +  +EM+ +  +P V   + L+ GL   G ++ AK
Sbjct: 181 IVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAK 240

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM++ M+ +G + D+ T+N+LI   CKS  V+   +++  + + GL  D  TY  +I   
Sbjct: 241 QMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGY 300

Query: 203 SKAGM--------------------------------IDEAFRLLHNLVEDGHKPFPSLY 230
            +AG                                 +++A  L  N+ +   +   + Y
Sbjct: 301 FQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTY 360

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I GM + G  +DA+  F  +  KG  P+   YT +I+   R  ++ ++     +M E
Sbjct: 361 NIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQE 420

Query: 291 MGLTPI 296
            GL P+
Sbjct: 421 DGLLPL 426



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 130/300 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S ++ +  K    D  + +F+          +  YN ++  LC    F  A +++ +M+
Sbjct: 13  FSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMM 72

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           + G+ PD  T + L+N +C   ++ +A + + +M + GF P V   + ++ G    G + 
Sbjct: 73  KFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVN 132

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++ ++M + G   D  T+NSL+  +C SG       +   +    +  +V T+  +I
Sbjct: 133 DAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 192

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G   EA +L   +      P    Y  +I G+   G+ D+A      M  KG  
Sbjct: 193 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCL 252

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    +  R  E      EM + GL   +  ++ +  G    G+ D A++I
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 119/251 (47%), Gaps = 3/251 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+S +I  F +   V +A+++ +K      +  V++YN+++   C++ L + A  L  RM
Sbjct: 82  TVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRM 141

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G   D  TY  LV   C SG+  +A   +++M  +   P V     ++   +  G  
Sbjct: 142 ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKF 201

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M ++    D+ T+NSLI  +C  G V+   +M   +   G   DV TY  L
Sbjct: 202 SEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTL 261

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +DE  +L   + + G       Y  II+G F+ G+ D A   FS M  +  
Sbjct: 262 INGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR-- 319

Query: 259 PPNRPVYTMLI 269
            PN   Y++L+
Sbjct: 320 -PNIRTYSILL 329



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 3/208 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     HG VD A ++ +      C   V+ YN+L+   C+ K       L R M
Sbjct: 222 TYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G V D  TY  ++  +  +G+   AQE    M  +   P +R   +L+ GL     +
Sbjct: 282 AQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRV 338

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M K    LD+ T+N +I  +CK G VE   +++ S+   GL  DV +Y  +
Sbjct: 339 EKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTM 398

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           I    +    D++  L   + EDG  P 
Sbjct: 399 ISGFCRKRQWDKSDLLYRKMQEDGLLPL 426



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/103 (19%), Positives = 48/103 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T S+++     +  V+ A+ +F        +  +  YN ++  +C++     A+ L R 
Sbjct: 323 RTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRS 382

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  KG  PD  +Y  +++ +C   +  ++    ++M + G  P
Sbjct: 383 LSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 425


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  120 bits (301), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 133/274 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K G V  A  + ++      +      N++L+ LC++K +  A  L+   
Sbjct: 421 TYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSP 480

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++GFVPD+ +Y  ++ A+        A     +M ++   P +   + L++GL     L
Sbjct: 481 PQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERL 540

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +N+ +++G V D  T+N +I   CK G++E     +  + +     DV T   L
Sbjct: 541 KEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTL 600

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +D+A +L  + VE G K     Y  +I+ M + G  D A  FF +M++KG 
Sbjct: 601 MNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGL 660

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P+   Y ++++     GR  EA N L ++ + G
Sbjct: 661 QPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 138/301 (45%), Gaps = 9/301 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T + ++  F + G +  A +V    TA+  +  +  YN L   LC+   
Sbjct: 269 MKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGK 328

Query: 68  FHGAYALIRRMIRKGF-VPDKRTYAILVNA---W-CSSGKMREAQEFLQEMSDKGFNPPV 122
              A+ L   M R G  +PD  TY  LV+A   W CSS  +R     L+EM DKG  P +
Sbjct: 329 VDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALR----LLEEMRDKGVKPTL 384

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++V+ L   G LE A   + K+ ++G   D+ T+N+LI+  CK+G V     +   
Sbjct: 385 VTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDE 444

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D  T   ++  + K    ++A  LLH+  + G  P    Y  ++   F+   
Sbjct: 445 MVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYN 504

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   + +M  +   P+   Y  LI    R  R  EA + L E  E GL P    +++
Sbjct: 505 PEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNI 564

Query: 303 V 303
           +
Sbjct: 565 I 565



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 119/282 (42%), Gaps = 13/282 (4%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS SP TL               +++VF              +N L+   C       A 
Sbjct: 181 LSRSPSTLP------------QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADAL 228

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A +  M   G  PD  TY  L+NA C  G + EA+  L  M   G  P     + LV   
Sbjct: 229 ATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAF 288

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-AD 191
              G+++ A ++V  M   GF  DL T+N L   +C++G+V+    +   + +LG    D
Sbjct: 289 ARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPD 348

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  L+ A  K     +A RLL  + + G KP    +  ++K + + G+ ++A     
Sbjct: 349 VVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLE 408

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           ++  +G  P+   Y  LI    + G   +A   + EM   GL
Sbjct: 409 KIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGL 450



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 144/318 (45%), Gaps = 1/318 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ-QCVLLYNSLLFA 61
           K +E M  Y      +T +++     + G VD A  + ++          V+ YN+L+ A
Sbjct: 299 KVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDA 358

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             + +    A  L+  M  KG  P   T+ I+V + C  GK+ EA   L++++++G  P 
Sbjct: 359 CFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPD 418

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + L+     AG +  A  ++++M+ +G  +D  T N+++  +CK    E   E+ +
Sbjct: 419 VITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLH 478

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S  + G   D  +Y  ++ A  K    + A RL   ++E    P  S Y  +IKG+ R  
Sbjct: 479 SPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRME 538

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A    +E   KG  P+   Y ++I    + G    A  +  +M E    P     +
Sbjct: 539 RLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCN 598

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + +GL   GK D A K+
Sbjct: 599 TLMNGLCLHGKLDKALKL 616



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 140/320 (43%), Gaps = 35/320 (10%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           +A+ +  +      +  ++ +N ++ +LC+      A   + ++  +G  PD  TY  L+
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426

Query: 95  NAWCSSGKMREAQEFLQEMSDKGF----------------------------NPPVRG-- 124
           +A+C +G + +A   + EM  KG                             +PP RG  
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV 486

Query: 125 RDLLVQGLLNAGYL-----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
            D +  G + A Y      E A ++ ++MI++  +  + T+N+LI+ +C+   ++  ++ 
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
                + GL  D +TY I+I A  K G ++ AFR  + +VE+  KP       ++ G+  
Sbjct: 547 LNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCL 606

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ D A   F     KG   +   Y  LI    + G    A ++  +M   GL P +  
Sbjct: 607 HGKLDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFT 666

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           +++V   L   G+ + A  +
Sbjct: 667 YNVVLSALSEAGRSEEAHNM 686



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 120/271 (44%), Gaps = 5/271 (1%)

Query: 56  NSLLFALCEV--KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           N++L AL      L   +  + R +I     P+  T+ +LV+  CS G + +A   L  M
Sbjct: 175 NAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTM 234

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G +P     + L+      G L  A+ ++ +M + G      T+N+L+    + G +
Sbjct: 235 QGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWI 294

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-PFPSLYAP 232
           +   ++  S+   G   D+ TY +L   + +AG +DEAFRL   +   G   P    Y  
Sbjct: 295 KQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYNT 354

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++   F+     DA     EM+ KG  P    + +++    + G+  EA   L ++ E G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           L P    ++ + D    C   ++A+   L++
Sbjct: 415 LAPDVITYNTLIDAY--CKAGNVAKAFTLMD 443



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 2/230 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++ A C+      A+    +M+   F PD  T   L+N  C  GK+ +A +  +   
Sbjct: 562 YNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWV 621

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KG    V   + L+Q +   G +++A    + M  +G   D  T+N ++  + ++G  E
Sbjct: 622 EKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSE 681

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIP-AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               M + +   G  +      +L P +  +A + +   +      E         Y   
Sbjct: 682 EAHNMLHKLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMER 741

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAA 282
           + G+   GQ  +A     EM  KG P +   Y T++  +  R  R   AA
Sbjct: 742 LNGLCTGGQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQKRQTHAA 791



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 141 AKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEV--EFCVEMYYSVCKLGLCADVSTYKI 197
           A Q+++ + ++ G    L+  N+++  + +S     +  ++++ S+ +L L  +  T+ +
Sbjct: 154 AAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNL 213

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+      G + +A   L  +   G  P    Y  ++    R+G   +A    + MK  G
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD--- 314
             P +P Y  L++   R G   +A   +  MT  G  P  R ++++  GL   GK D   
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAF 333

Query: 315 -LAEKIELLEVSLRSV 329
            L +++E L  +L  V
Sbjct: 334 RLKDEMERLGTALPDV 349


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 139/310 (44%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           ++K   L VS    + ++    K G VD A E++ +      Q  V   N ++ ALC+ +
Sbjct: 209 VLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQ 268

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
                 + +  M  KG  PD  TY  L+NA+C  G + EA E +  MS KG  P V   +
Sbjct: 269 KIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYN 328

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ GL   G    AK ++++M+K G   D  T+N L+   C++  +     ++  +   
Sbjct: 329 AIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ 388

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  D+ ++  LI  +SK G +D+A +   ++   G  P   +Y  +I G  R G   +A
Sbjct: 389 GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEA 448

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EM  +G   +   Y  ++    +     EA     EMTE G+ P    F  + +G
Sbjct: 449 LKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLING 508

Query: 307 LKNCGKHDLA 316
               G  + A
Sbjct: 509 YSKDGNMNKA 518



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+      +++I  F ++G++  A++V ++     C   V+ YN++L  LC+ K+
Sbjct: 420 MKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKM 479

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G  PD  T+  L+N +   G M +A    + M  +   P V   + 
Sbjct: 480 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 539

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      +E   ++ N MI +    +  ++  LI   C  G V     ++  + + G
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             A + T   ++    +AG   +A   L N++  G  P    Y  +I G  +    D AF
Sbjct: 600 FEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAF 659

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              ++M+  G  P+   Y +++    R GR  EA   +++M E G+ P    +  + +G
Sbjct: 660 ALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 718



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 115/243 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G ++ AV +F      N +  V+ YN+L+   C+         L   M
Sbjct: 501 TFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDM 560

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +   P+  +Y IL+N +C+ G + EA     EM +KGF   +   + +V+G   AG  
Sbjct: 561 ISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNA 620

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A + ++ M+ +G V D  T+N+LI    K   ++    +   +   GL  DV TY ++
Sbjct: 621 VKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVI 680

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +   S+ G + EA  ++  ++E G  P  S Y  +I G   +    +AF    EM  +G 
Sbjct: 681 LNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 740

Query: 259 PPN 261
            P+
Sbjct: 741 VPD 743



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 135/309 (43%), Gaps = 35/309 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + + GL++ A E+ +  +    + CV  YN+++  LC+   +  A  ++  M
Sbjct: 291 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 350

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG-------------- 124
           ++ G  PD  TY IL+   C +  M +A+    EM  +G  P +                
Sbjct: 351 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 410

Query: 125 -------RDL--------------LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                  RD+              L+ G    G +  A ++ ++M++QG VLD+ T+N++
Sbjct: 411 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTI 470

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +  +CK   +    E++  + + G+  D  T+  LI   SK G +++A  L   +++   
Sbjct: 471 LNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNL 530

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +I G  +  + +     +++M  +   PN   Y +LI      G   EA  
Sbjct: 531 KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFR 590

Query: 284 YLVEMTEMG 292
              EM E G
Sbjct: 591 LWDEMVEKG 599



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 124/266 (46%), Gaps = 17/266 (6%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-----------------DKRT 89
           N +  +  +++++  L   +    A A+I RM+RK  V                  +   
Sbjct: 127 NFKHSLQSFSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLV 186

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +LV  +  + K+RE  E  + +  KG    +   + L+ GL+  G+++ A ++  +++
Sbjct: 187 FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVV 246

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G  +++ T N +I  +CK+ ++E        + + G+  DV TY  LI A  + G+++
Sbjct: 247 RSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLE 306

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EAF L+ ++   G KP    Y  II G+ + G++  A     EM   G  P+   Y +L+
Sbjct: 307 EAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILL 366

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTP 295
             C R    ++A     EM   G+ P
Sbjct: 367 VECCRNDNMMDAERIFDEMPSQGVVP 392



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 139/347 (40%), Gaps = 39/347 (11%)

Query: 13  LSVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           + +SP T +   L++E      ++D A  +F++  +      ++ +++L+  L +     
Sbjct: 353 IGMSPDTATYNILLVECCRNDNMMD-AERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLD 411

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------------------------- 103
            A    R M   G  PD   Y IL+  +C +G M                          
Sbjct: 412 QALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTIL 471

Query: 104 ---------REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                     EA E   EM+++G  P       L+ G    G +  A  +   MI++   
Sbjct: 472 NGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLK 531

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+N+LI+  CK  E+E   E++  +    +  +  +Y ILI      G + EAFRL
Sbjct: 532 PDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRL 591

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +VE G +        I+KG  R G    A  F S M +KG  P+   Y  LI    +
Sbjct: 592 WDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK 651

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 A   + +M   GL P    ++++ +G    G+   AE I L
Sbjct: 652 EENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 698



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 130/311 (41%), Gaps = 6/311 (1%)

Query: 17  PQTLSLIIEEFGKHGLVDNAVEVFNKC--TAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           P   ++I+    K G+  + VE+      T  NC    L+++ L+    + +        
Sbjct: 149 PDAQAVILRMVRKSGV--SRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEA 206

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            R +  KG          L+      G +  A E  QE+   G    V   ++++  L  
Sbjct: 207 FRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCK 266

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              +E+ K  ++ M ++G   D+ T+N+LI   C+ G +E   E+  S+   GL   V T
Sbjct: 267 NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFT 326

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  +I  + K G    A  +L  +++ G  P  + Y  ++    R     DA   F EM 
Sbjct: 327 YNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMP 386

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  P+   ++ LI +  + G   +A  Y  +M   GL P +  + ++  G    G   
Sbjct: 387 SQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMS 446

Query: 315 LAEKI--ELLE 323
            A K+  E+LE
Sbjct: 447 EALKVRDEMLE 457



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 97/220 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+M   NL     T + +I+ F K   ++   E++N   +       + Y  L+   C +
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ L   M+ KGF     T   +V  +C +G   +A EFL  M  KG  P     
Sbjct: 583 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 642

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G +    ++ A  +VNKM   G + D+ T+N ++    + G ++    +   + +
Sbjct: 643 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 702

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            G+  D STY  LI        + EAFR+   +++ G  P
Sbjct: 703 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 142/319 (44%), Gaps = 20/319 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G V+ A E+ ++         + +YN+L+  LC+      A  L   M
Sbjct: 362 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 421

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ +++ +C S  + EA     EM  KG  P     + LV G    G +
Sbjct: 422 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 481

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  +M+++GF   L +FN+LI+  CKS +++   +++  +    +  D  TY  +
Sbjct: 482 EKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 540

Query: 199 IPAVSKAGMIDEA-----------------FRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           I    KAG ++EA                 F L   +V  G KP    Y  +I    +  
Sbjct: 541 IDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 600

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCF 300
              +AF    E+  KG      ++ +LIT   +     EA+  L EM E+GL P ++ C 
Sbjct: 601 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 660

Query: 301 DLVTDGLKNCGKHDLAEKI 319
            LV       GK D A ++
Sbjct: 661 TLVRS-FHEAGKMDEATRV 678



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 1/307 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T E M+   L       S +I+ F + G +D  + + +   +      ++ YN L+  LC
Sbjct: 32  TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 91

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  +++ MI  G  P+ RT+ +L+  +C    M  A E L EM  +   P   
Sbjct: 92  KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 151

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               ++ GL +   L  A +++ KM   G   ++  +++LI      G +E    +   +
Sbjct: 152 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM 211

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  D+  Y  +I  +SKAG ++EA   L  +   G KP    +   I G  + G+ 
Sbjct: 212 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 271

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDL 302
            +A  +F EM   G  PN P+YT+LI    + G  +EA +    +  +G+ P +  C   
Sbjct: 272 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 331

Query: 303 VTDGLKN 309
           +   LKN
Sbjct: 332 IHGLLKN 338



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
            M+  G +P+   Y +L+N    +G + EA    + +   G  P V+     + GLL  G
Sbjct: 280 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 339

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            ++ A ++ +++ ++G V D+ T++SLI   CK GEVE   E++  +C  G+  ++  Y 
Sbjct: 340 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 399

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+  + K+G I  A +L   + E G +P    Y+ +I G  +     +AF  F EM  K
Sbjct: 400 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK 459

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNC 310
           G  P+  VY  L+  C + G   +A N   EM + G    +  F+ + DG  K+C
Sbjct: 460 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSC 513



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKPY-NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  E++K    L   P  +T  L+IE + +   +  A+E+ ++    N     + Y +
Sbjct: 96  MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 155

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC  K    A  L+ +M   G  P+   Y+ L+  + S G++ EA+  L  MS  G
Sbjct: 156 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 215

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + ++  L  AG +E A   + ++  +G   D  TF + I    K+G++    
Sbjct: 216 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 275

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           + +  +   GL  +   Y +LI    KAG + EA  +  +L   G  P     +  I G+
Sbjct: 276 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGL 335

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+  +A   FSE+K KG  P+   Y+ LI+   + G   +A     EM   G+ P  
Sbjct: 336 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 395

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++ + DGL   G    A K+
Sbjct: 396 FIYNALVDGLCKSGDIQRARKL 417



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 135/316 (42%), Gaps = 2/316 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++M    + ++  T +++I    K G ++ A E+        C+     +  L+   C  
Sbjct: 69  DVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCRE 128

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L+  M ++  VP   +Y  ++N  C    +  A + L++M+  G  P V   
Sbjct: 129 HNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVY 188

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G  + G +E A+++++ M   G   D+  +N++I  + K+G++E        +  
Sbjct: 189 STLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG 248

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D  T+   I   SK G + EA +    +++ G  P   LY  +I G F+ G   +
Sbjct: 249 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME 308

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  +   G  P+    +  I    + GR  EA     E+ E GL P    +  +  
Sbjct: 309 ALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLIS 368

Query: 306 GLKNCGKHDLAEKIEL 321
           G   C + ++ +  EL
Sbjct: 369 GF--CKQGEVEKAFEL 382



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 5/324 (1%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M + +EL   M+  NL  S  +   +I        +  A ++  K T    +  V++Y++
Sbjct: 131 MGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYST 190

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+           A  L+  M   G  PD   Y  +++    +GKM EA  +L E+  +G
Sbjct: 191 LIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 250

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P        + G    G +  A +  ++M+  G + +   +  LI    K+G +   +
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 310

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  +  LG+  DV T    I  + K G + EA ++   L E G  P    Y+ +I G 
Sbjct: 311 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 370

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G+ + AF    EM +KG  PN  +Y  L+    + G    A      M E GL P S
Sbjct: 371 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430

Query: 298 RCFDLVTDGLKNCGKHDLAEKIEL 321
             +  + DG   C   ++AE   L
Sbjct: 431 VTYSTMIDGY--CKSENVAEAFSL 452



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T    I  + K G +  A + F++           LY  L+    +      A ++ R +
Sbjct: 257 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G +PD +T +  ++    +G+++EA +   E+ +KG  P V     L+ G    G +
Sbjct: 317 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++ ++M  +G   ++  +N+L++ +CKSG+++   +++  + + GL  D  TY  +
Sbjct: 377 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  + EAF L H +   G +P   +Y  ++ G  + G  + A   F EM  KG 
Sbjct: 437 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 496

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                  T++   C +  +  EA+    EM    + P    +  V D     GK + A
Sbjct: 497 ATTLSFNTLIDGYC-KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 553



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 1/252 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG VP+  TY I+    C + +M EA+   +EM   G  P       L+ G +  G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++   ++ + M+  G  ++L T+N LI  +CK G++E   E+   +  LG   +  T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +   +  A  LL  + +    P    Y  +I G+        A     +M   G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN  VY+ LI      GR  EA   L  M+  G+ P   C++ +   L   GK + A 
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 318 KIELLEVSLRSV 329
              LLE+  R +
Sbjct: 241 TY-LLEIQGRGL 251



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 1/273 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    K G +  A+ +F    A      V   ++ +  L +      A  +   +  
Sbjct: 294 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 353

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG VPD  TY+ L++ +C  G++ +A E   EM  KG  P +   + LV GL  +G ++ 
Sbjct: 354 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 413

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ + M ++G   D  T++++I+  CKS  V     +++ +   G+      Y  L+ 
Sbjct: 414 ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH 473

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G +++A  L   +++ G     S +  +I G  +  +  +A   F EM  K   P
Sbjct: 474 GCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 532

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +   YT +I    + G+  EA     EM E  L
Sbjct: 533 DHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 18/285 (6%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    L     T S +I+ + K   V  A  +F++  +   Q    +YN+L+   
Sbjct: 416 KLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC 475

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L R M++KGF     ++  L++ +C S K++EA +  QEM  K   P  
Sbjct: 476 CKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDH 534

Query: 123 RGRDLLVQGLLNAGYLESAK-----------------QMVNKMIKQGFVLDLETFNSLIE 165
                ++     AG +E A                   +  KM+ +G   D  T+  +I 
Sbjct: 535 VTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIY 594

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             CK   +    ++   V   G+    + + +LI A+ K   + EA +LL  + E G KP
Sbjct: 595 AHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 654

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             +  + +++     G+ D+A   F  +K  G  P+      L+ 
Sbjct: 655 SLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVN 699



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 89/212 (41%), Gaps = 17/212 (8%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L +N+L+   C+      A  L + MI K  +PD  TY  +++  C +GKM EA    +
Sbjct: 499 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 558

Query: 112 EMSD-----------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           EM +                 KG  P      L++        L  A ++ ++++ +G +
Sbjct: 559 EMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 618

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                 + LI  +CK  ++    ++   + +LGL   ++    L+ +  +AG +DEA R+
Sbjct: 619 TKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRV 678

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
              +   G  P  +    ++ G       +DA
Sbjct: 679 FEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDA 710



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 3/215 (1%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L+  Y  S   Q  S + +E     ++ + V  +     ++C+   +   +LLF   + +
Sbjct: 505 LIDGYCKSCKIQEASQLFQEMIAKQIMPDHV-TYTTVIDWHCKAGKMEEANLLFKEMQER 563

Query: 67  --LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +    +AL  +M+ KG  PD+ TY +++ A C    + EA +   E+  KG       
Sbjct: 564 NLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTI 623

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            DLL+  L     L  A +++++M + G    L   ++L+ +  ++G+++    ++  V 
Sbjct: 624 HDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVK 683

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
            LGL  D +T   L+         ++A  L+  LV
Sbjct: 684 SLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 6/283 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG-AYALIRRMIRK 81
           +I   G+   +  AVE+F +    NC   V+ YN+++ +L E K     A + + RM + 
Sbjct: 342 LINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKD 401

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G VP   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 402 GVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAA 461

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +      +  +  +I+   K G     + ++  + KLG   DV  Y  LI  
Sbjct: 462 NELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITG 521

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +A M+DEAF L   + E+G  P  + +  I+ G+ R G    A   F++MK     P+
Sbjct: 522 MVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPD 581

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              Y  ++    R G F EA   + EM   G       +DL+T
Sbjct: 582 AVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFE-----YDLIT 619



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 140/321 (43%), Gaps = 2/321 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W+TI+ M     ++ P  LS I++  G+  +V+ A+ +F +     C+     YNS++ 
Sbjct: 144 LWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVIL 203

Query: 61  ALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L +       + L   M  +G   PD  TY+ L++A+    +   A     EM + G  
Sbjct: 204 MLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQ 263

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +    L+      G +E A  +V++M  +  V  + T+  LI  + KSG VE    +
Sbjct: 264 PTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGV 323

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y ++ K G   DV     LI  + ++  + EA  L   +      P    Y  IIK +F 
Sbjct: 324 YKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFE 383

Query: 240 -RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            +    +A  +   MK  G  P+   Y++LI    +  R  +A   L EM E G  P   
Sbjct: 384 DKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPA 443

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            +  + + L    +++ A ++
Sbjct: 444 AYCSLINSLGKAKRYEAANEL 464



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 133/305 (43%), Gaps = 1/305 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  + +  + ++  + K G V+ A+ + ++     C   V  Y  L+  L +   
Sbjct: 257 MKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSGR 316

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY + + M++ G  PD      L+N    S +++EA E  +EM      P V   + 
Sbjct: 317 VEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNT 376

Query: 128 LVQGLL-NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +      A   + +M K G V    T++ LI+  CK+  VE  + +   + + 
Sbjct: 377 IIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEK 436

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI ++ KA   + A  L   L E+       +YA +IK   + G+F++A
Sbjct: 437 GFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEA 496

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F+EMK  G  P+   Y  LIT   R     EA +    M E G  P     +++ +G
Sbjct: 497 MGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNG 556

Query: 307 LKNCG 311
           L   G
Sbjct: 557 LARTG 561



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 7/302 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  FGK    D+AV +F++      Q    +Y +L+    ++     A  L+  M
Sbjct: 233 TYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +  VP   TY  L+     SG++ +A    + M   G  P V   + L+  L  +  L
Sbjct: 293 RMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRL 352

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS----GEVEFCVEMYYSVCKLGLCADVST 194
           + A ++  +M       ++ T+N++I+++ +      E    +E    + K G+     T
Sbjct: 353 KEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLE---RMKKDGVVPSSFT 409

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ILI    K   +++A  LL  + E G  P P+ Y  +I  + +  +++ A   F E+K
Sbjct: 410 YSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELK 469

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
                 +  VY ++I   G+ GRF EA     EM ++G  P    ++ +  G+      D
Sbjct: 470 ENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMD 529

Query: 315 LA 316
            A
Sbjct: 530 EA 531



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 125/302 (41%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G V++A  V+       C+  V+L N+L+  L        A  L   M
Sbjct: 303 TYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEM 362

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 P+  TY  ++ + +       EA  +L+ M   G  P      +L+ G      
Sbjct: 363 RLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNR 422

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI ++ K+   E   E++  + +    + V  Y +
Sbjct: 423 VEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAV 482

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K G  +EA  L + + + G  P    Y  +I GM R    D+AF  F  M+  G
Sbjct: 483 MIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENG 542

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   + +++    R G    A     +M    + P +  ++ V   L   G  + A 
Sbjct: 543 CNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEAT 602

Query: 318 KI 319
           K+
Sbjct: 603 KL 604



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+ FGK G  + A+ +FN+     C   V  YN+L+  +    +   A++
Sbjct: 474 SSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFS 533

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L R M   G  PD  ++ I++N    +G  + A E   +M      P     + ++  L 
Sbjct: 534 LFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLS 593

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            AG  E A +++ +M  +GF  DL T++S++E + K  E
Sbjct: 594 RAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDE 632



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 3/241 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +  S  T S++I+ F K   V+ A+ +  +        C   Y SL+ +L +
Sbjct: 395 LERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGK 454

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K +  A  L + +         R YA+++  +   G+  EA     EM   G  P V  
Sbjct: 455 AKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYA 514

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G++ A  ++ A  +   M + G   D+ + N ++  + ++G  +  +EM+  + 
Sbjct: 515 YNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMK 574

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  D  +Y  ++  +S+AG+ +EA +L+  +   G +     Y+ I++ +   G+ D
Sbjct: 575 SSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAV---GKVD 631

Query: 245 D 245
           +
Sbjct: 632 E 632


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 379 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 121/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 280 NTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWK 399

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 400 GSKLLKEMQRNGHAPSVVTYNVLM 423



 Score = 94.7 bits (234), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 69  FSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 208 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 268 LSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 327

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D+ TY ++
Sbjct: 328 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMI 387

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  +GH P    Y  ++ G
Sbjct: 388 INEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  PD  TY +++N +C  G + +  + L+EM   G  P V  
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVT 418

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 419 YNVLMNG 425


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 148/299 (49%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+ + +  +  T + ++ +  K G   +A +VF++         ++ YN+L+  LC  
Sbjct: 257 EKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCRE 316

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A  ++ +M      P+  TY  L++ +CS GK+ +A    +++  +G +P +   
Sbjct: 317 MKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTY 376

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++LV G    G    A +MV +M ++G      T+  LI+T  +S  +E  +++  S+ +
Sbjct: 377 NVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEE 436

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LGL  DV TY +LI      G ++EA RL  ++VE   +P   +Y  +I G  + G    
Sbjct: 437 LGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYR 496

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A   F +M+ K   PN   Y+ LI +  +  +  EA + + +M + G+ P     +L++
Sbjct: 497 ALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLIS 555



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 135/317 (42%), Gaps = 4/317 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + L  +  T +++I    K+G+     E++ K         +  YN ++  LC+   
Sbjct: 224 MGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGR 283

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +   M  +G   +  TY  L+   C   K  EA + + +M     NP +   + 
Sbjct: 284 TKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNT 343

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G  + G L  A  +   +  +G    L T+N L+   C+ G+     +M   + + G
Sbjct: 344 LIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERG 403

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +     TY ILI   +++  ++ A +L  ++ E G  P    Y+ +I G   +GQ ++A 
Sbjct: 404 IKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEAS 463

Query: 248 CFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F  M  K   PN  +Y TM++  C  G  +  A     +M E  L P    +  +   
Sbjct: 464 RLFKSMVEKMLEPNEVIYNTMILGYCKEGSSY-RALRLFRDMEEKELAPNVASYSYLIRV 522

Query: 307 LKNCGKHDLAEKIELLE 323
           L  C +  L E  +L+E
Sbjct: 523 L--CKERKLKEAEDLVE 537



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 120/261 (45%), Gaps = 5/261 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           LY  ++ A  + +    +      M+ KGFVP    +  L+     S    +   F  E 
Sbjct: 96  LYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNES 155

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K     V    ++++G   AG +E +  ++ ++ + GF  ++  + +LI+  CK GE+
Sbjct: 156 KIKVV-LDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEI 214

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP- 232
           E   ++++ + K GL A+  TY +LI  + K G+  + F +   + E  H  FP+LY   
Sbjct: 215 EKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQE--HGVFPNLYTYN 272

Query: 233 -IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++  + + G+  DAF  F EM+ +G   N   Y  LI    R  +  EA   + +M   
Sbjct: 273 CVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSY 332

Query: 292 GLTPISRCFDLVTDGLKNCGK 312
            + P    ++ + DG  + GK
Sbjct: 333 VINPNLITYNTLIDGFCSVGK 353



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 134/305 (43%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +  ++I+   + G ++ + ++  +   F     V++Y +L+   C+      A  L   M
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G V ++ TY +L++    +G  ++  E  ++M + G  P +   + ++  L   G  
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRT 284

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++M ++G   ++ T+N+LI  +C+  +     ++   +    +  ++ TY  L
Sbjct: 285 KDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTL 344

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G + +A  L  +L   G  P    Y  ++ G  R+G    A     EM+ +G 
Sbjct: 345 IDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGI 404

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P++  YT+LI    R      A      M E+GL P    + ++  G   C K  + E 
Sbjct: 405 KPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGF--CIKGQMNEA 462

Query: 319 IELLE 323
             L +
Sbjct: 463 SRLFK 467



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 124/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ +  S +    + +I+   K G ++ A ++F +   F        Y  L+  L +  +
Sbjct: 189 LREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGI 248

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               + +  +M   G  P+  TY  ++N  C  G+ ++A +   EM ++G +  +   + 
Sbjct: 249 KKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNT 308

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL        A +++++M       +L T+N+LI+  C  G++   + +   +   G
Sbjct: 309 LIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRG 368

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   + TY +L+    + G    A +++  + E G KP    Y  +I    R    + A 
Sbjct: 369 LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAI 428

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              S M+  G  P+   Y++LI      G+  EA+     M E  L P
Sbjct: 429 QLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEP 476



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 1/232 (0%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R Y +++NA+  S  +  +  +  EM DKGF P     + L+  ++ +          N+
Sbjct: 95  RLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNE 154

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
             K   VLD+ +F  +I+  C++GE+E   ++   + + G   +V  Y  LI    K G 
Sbjct: 155 S-KIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGE 213

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           I++A  L   + + G       Y  +I G+F+ G     F  + +M+  G  PN   Y  
Sbjct: 214 IEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNC 273

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           ++    + GR  +A     EM E G++     ++ +  GL    K + A K+
Sbjct: 274 VMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKV 325


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M 
Sbjct: 145 FNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMX 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +B AF     ++E+  +     Y  +I G+ + G+  DA      M   G  
Sbjct: 325 DGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 118/264 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 XKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++ +M  +G   D  T+ +LI+  CK G ++   E    + +
Sbjct: 286 NXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIE 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 71  DIYVFSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + 
Sbjct: 131 KEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +
Sbjct: 191 GDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTF 250

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGL--CKKGDLKQANDLIXEM 308

Query: 325 SLRSV 329
           S++ +
Sbjct: 309 SMKGL 313



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 BTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +   + ++
Sbjct: 75  FSGLIXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R A      ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M E  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKM 374

Query: 320 --ELLEVSLR 327
              +L V L+
Sbjct: 375 LRXMLSVGLK 384


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 149/339 (43%), Gaps = 35/339 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S    T + +I+ +GK G ++   ++ ++     C   V+ YN+L+    +   
Sbjct: 226 MKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGR 285

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY+    M R+G V +  T++  V+A+C  G ++EA +   +M  +G  P       
Sbjct: 286 MEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTS 345

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-------------- 173
           LV G   AG L+ A  ++++M+ QG V ++ T+  +++ +CK G+V              
Sbjct: 346 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGG 405

Query: 174 ---------------------EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
                                E  +++   +   G+  DVS Y  LI  + K   +DEA 
Sbjct: 406 VKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAK 465

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LLH +   G +P   +Y  I+  +F+ G+  +A     ++   G  PN   Y  LI   
Sbjct: 466 SLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGL 525

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            + G   EA ++  +M E+GL P  + +  + DG    G
Sbjct: 526 CKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIG 564



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 4/280 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S  P  +  ++     HGL+D+AV    +             N +L  L   +       
Sbjct: 131 SALPSVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNR----QGG 186

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+RR+     VP+  T+ I+++  C  G++ EA+     M   G +P V   + L+ G  
Sbjct: 187 LVRRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 246

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G LE  +Q+V++M K G   D+ T+N+LI    K G +E     +  + + G+ A+V 
Sbjct: 247 KCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVV 306

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+   + A  K G++ EA +L   +   G  P    Y  ++ G  + G+ DDA     EM
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 366

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G  PN   YT+++    + G+  EA N L  M   G+
Sbjct: 367 VHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGV 406



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +  A  +F +  A  C   V+ YNSL+    +         L+  M
Sbjct: 202 TFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEM 261

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G   D  TY  L+N +   G+M +A  +  EM  +G    V      V      G +
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLV 321

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +M  +G + +  T+ SL++  CK+G ++  + +   +   GL  +V TY ++
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 381

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G + EA  +L  +   G K    LY  +I G F     + A    ++MK KG 
Sbjct: 382 VDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGM 441

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +  +Y  LI    +  +  EA + L +M   GL P +  +  + D L   GK   +E 
Sbjct: 442 ELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE--SEA 499

Query: 319 IELLEVSLRS 328
           + LL   L S
Sbjct: 500 VALLHKILDS 509



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 137/341 (40%), Gaps = 43/341 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  T S  ++ F K GLV  A+++F +            Y SL+   C+   
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+ +G VP+  TY ++V+  C  GK+ EA   L  M   G    V+  +L
Sbjct: 356 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGG----VKANEL 411

Query: 128 LVQGLLNAGYL----ESAKQMVNKMIKQGFVLDLETFNSLIETICK-------------- 169
           L   L++  ++    E A  ++N+M  +G  LD+  + +LI  +CK              
Sbjct: 412 LYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKM 471

Query: 170 ---------------------SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                                +G+    V + + +   G   +V TY  LI  + KAG I
Sbjct: 472 AGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSI 531

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA    + + E G  P    Y  +I G  + G  + A    +EM  KG   ++ VYT L
Sbjct: 532 SEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSL 591

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           I    +     +A     +M E GL     C+     G  N
Sbjct: 592 IDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCN 632



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 132/302 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G V  A  V +       +   LLY +L+           A  L+ +M
Sbjct: 377 TYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQM 436

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y  L+   C   K+ EA+  L +M+  G  P       ++  L  AG  
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKE 496

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +++K++  GF  ++ T+ +LI+ +CK+G +   +  +  + +LGL  +V  Y  L
Sbjct: 497 SEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTAL 556

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +++A  L++ +++ G      +Y  +I G  ++    DAF   ++M   G 
Sbjct: 557 IDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGL 616

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT  I+         EA   L EM   G+TP    ++ +    +  G  + A  
Sbjct: 617 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASS 676

Query: 319 IE 320
           ++
Sbjct: 677 LQ 678



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 115/255 (45%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A+++ N+      +  V LY +L++ LC+ +    A +L+ +M   G  P+   Y  +
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++A   +GK  EA   L ++ D GF P V     L+ GL  AG +  A    NKM + G 
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGL 546

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +++ + +LI+  CK G +   + +   +   G+  D   Y  LI    K   + +AF 
Sbjct: 547 DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFA 606

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++E G +     Y   I G        +A    SEM   G  P++ VY  LI    
Sbjct: 607 LKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQ 666

Query: 274 RGGRFVEAANYLVEM 288
           + G   EA++   EM
Sbjct: 667 KLGNMEEASSLQNEM 681



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 104/222 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD A  + +K      +   ++Y +++ AL +      A AL+ +++  GF P+  TY  
Sbjct: 461 VDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCA 520

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C +G + EA     +M + G +P V+    L+ G    G L  A  ++N+MI +G
Sbjct: 521 LIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD   + SLI+   K   ++    +   + + GL  D+  Y   I       M+ EA 
Sbjct: 581 MSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEAR 640

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            +L  ++  G  P  ++Y  +I+   + G  ++A    +EM+
Sbjct: 641 GVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEME 682


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 7/320 (2%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T + +KP     +P     +I  + + G V  A E+F+K T  N    +  YNSL+F L 
Sbjct: 459 TTKGLKPNAFVYAP-----LISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLS 513

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +V     +     +M  +G +P++ TY+ L++ +  +G +  A++ +Q M D G  P   
Sbjct: 514 KVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDV 573

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L++    +  +E        M+ QG +LD   +  LI  +  SG +E    +   +
Sbjct: 574 IYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGI 633

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K G   DV  Y  LI  + K    ++AF +L  + + G  P    Y  +I G+ + G  
Sbjct: 634 EKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDI 693

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A   F+ +  KG  PN   YT LI    + G    A     EM   G+TP +  + ++
Sbjct: 694 SYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVL 753

Query: 304 TDGLKNCGKHDLAEKIELLE 323
           T G  + G  DL + + L+E
Sbjct: 754 TTGCSSAG--DLEQAMFLIE 771



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 137/304 (45%), Gaps = 16/304 (5%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLL-------------YNSLLFALCEVKLFHGAYAL 74
           G+HG   +A+E + K   F+  + VL+             YN L+  LC       A+  
Sbjct: 223 GRHG---SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 279

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            + M   G VPD  TY  L+N  C S +  EA+  L EMS     P V     L+ G + 
Sbjct: 280 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 339

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G  + A +M+ +M+  G   +  T+++L+  +CK G+++    +   + +     D  T
Sbjct: 340 EGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTIT 399

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ++I    +     +AFRLL  +   G  P    Y+ +I G+ + G+ + A     EM 
Sbjct: 400 YNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT 459

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            KG  PN  VY  LI+   R G    A     +MT++ + P   C++ +  GL   G+ +
Sbjct: 460 TKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVE 519

Query: 315 LAEK 318
            + K
Sbjct: 520 ESTK 523



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F + G  D A ++  +  A   Q   + Y++L+  LC++     A  L+++M+R  
Sbjct: 333 LIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDS 392

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY +++         ++A   L EM + G +P V    +++ GL  +G  E A 
Sbjct: 393 HRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKAS 452

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ +M  +G   +   +  LI   C+ G V    E++  + K+ +  D+  Y  LI  +
Sbjct: 453 DLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGL 512

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SK G ++E+ +    + E G  P    Y+ +I G  + G  + A      M   G  PN 
Sbjct: 513 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPND 572

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +Y  L+    +     + ++    M + G+   +R + ++   L + G  + A ++
Sbjct: 573 VIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRV 629



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 135/323 (41%), Gaps = 35/323 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +LIIE   +H    +A  + ++         V  Y+ ++  LC+      A  L+  M
Sbjct: 399 TYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 458

Query: 79  IRKGFVPDKRTYAILVNAWCSS-----------------------------------GKM 103
             KG  P+   YA L++ +C                                     G++
Sbjct: 459 TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV 518

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            E+ ++  +M ++G  P       L+ G L  G LESA+Q+V +M+  G   +   +  L
Sbjct: 519 EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL 578

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +E+  KS ++E     + S+   G+  D   Y ILI  +S +G ++ AFR+L  + ++G 
Sbjct: 579 LESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGS 638

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y+ +I G+ +    + AF    EM  KG  PN   Y  LI    + G    A N
Sbjct: 639 VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN 698

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
               +   GL P    +  + DG
Sbjct: 699 VFNSILAKGLVPNCVTYTSLIDG 721



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 116/259 (44%), Gaps = 1/259 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y  L+  L        A+ ++  + + G VPD   Y+ L++  C +    +A   L EM
Sbjct: 609 IYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S KG +P +   + L+ GL  +G +  A+ + N ++ +G V +  T+ SLI+  CK G++
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                +Y  +   G+  D   Y +L    S AG +++A  L+  +   GH    S +  +
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISS-FNNL 787

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G  +RG+  +       +  +G  PN      +I+     G+  E     VE+ +   
Sbjct: 788 VDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTS 847

Query: 294 TPISRCFDLVTDGLKNCGK 312
              +R F  +   + N GK
Sbjct: 848 ESAARHFSSLFMDMINQGK 866



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 117/277 (42%), Gaps = 19/277 (6%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A  + ++ +       ++ YN+L+  LC+      A  +   ++ KG VP+  TY  L
Sbjct: 659 EKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 718

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++  C  G +  A     EM   G  P      +L  G  +AG LE A  ++ +M  +G 
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA-- 211
              + +FN+L++  CK G+++  +++ + +   GL  +  T + +I  +S+AG + E   
Sbjct: 779 A-SISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 837

Query: 212 --FRLLHNLVEDGHKPFPSLYAPIIK----------GMFR----RGQFDDAFCFFSEMKI 255
               L     E   + F SL+  +I            M R     G  D A      +  
Sbjct: 838 IFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVA 897

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           K  P     Y  ++    R G+  EA N L EM + G
Sbjct: 898 KSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 129/288 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G    A+ +F           VL YN L+   C +     A  L   M
Sbjct: 374 TYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEM 433

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G +PD  TY IL+    +   +   +EF  EM  KG  P     +  +   +  G +
Sbjct: 434 VEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDI 493

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             + Q+   ++ +G   D  T+N LI+ +CK+G ++   E+   +   GL  D  TY  L
Sbjct: 494 SKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCL 553

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  + G + EA +  ++++ DG  P    Y  II    RRG    A+ +F +M  +G 
Sbjct: 554 IHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGV 613

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            PN   Y +LI    R GR   A  +  EM E GL P    + L+ DG
Sbjct: 614 EPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 140/318 (44%), Gaps = 5/318 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTA--FNCQQCVLLYNSLLFALCEVKL 67
            L + P   T + +++ F K G  D    +  +  A   +C    + YN ++  L   K 
Sbjct: 224 QLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLAR-KG 282

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +    A +   +R        TY  L+    + G +++  +   EM ++G  P V   + 
Sbjct: 283 YLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNA 342

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GLL +G +E+A+    +M   G + D+ T+NSL+   CK+G  +  + ++  + + G
Sbjct: 343 MIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAG 402

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   V TY ILI    + G ++EA RL   +VE G  P    Y  ++KG           
Sbjct: 403 LAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTR 462

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            FF EM  KG  P+   Y   I      G   ++      +   G++  +  ++++ DGL
Sbjct: 463 EFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGL 522

Query: 308 KNCGKHDLAEKIELLEVS 325
              G    AE++ +  +S
Sbjct: 523 CKTGNLKDAEELMMQMIS 540



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 94/241 (39%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+  L           L   M  +G +P   TY  +++    SG++  AQ    EM 
Sbjct: 305 YNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMR 364

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P V   + L+ G   AG  + A  +   + + G    + T+N LI+  C+ G++E
Sbjct: 365 AMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 424

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + G   DV TY IL+        +         ++  G +P    Y   I
Sbjct: 425 EARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI 484

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
                 G    +F     + ++G   +   Y +LI    + G   +A   +++M   GL 
Sbjct: 485 CAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ 544

Query: 295 P 295
           P
Sbjct: 545 P 545



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 72/153 (47%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S    T +++I+   K G + +A E+  +  +   Q   + Y  L+ A CE      A 
Sbjct: 508 ISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREAR 567

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
                MI  G  P   TY ++++A+C  G +  A  + ++M ++G  P     ++L+  L
Sbjct: 568 KFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 627

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
              G  + A +   +M+++G V +  T+  LI+
Sbjct: 628 CRMGRTQLAYRHFYEMLERGLVPNKYTYTLLID 660



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 53/115 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    + G +  A + FN   +       + Y  ++ A C     + AY   R+M
Sbjct: 549 TYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKM 608

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           + +G  P++ TY +L++A C  G+ + A     EM ++G  P      LL+ G L
Sbjct: 609 LEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDGKL 663



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 100/249 (40%), Gaps = 38/249 (15%)

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           +EM+  G  P V+  + +++ L +A   +    +  +M++ G    + T+N+L+++  K 
Sbjct: 185 REMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKE 244

Query: 171 G----------EVEF----CV--EMYYSVCKLGLC--------------------ADVST 194
           G          E+E     C+  ++ Y+V   GL                     A   T
Sbjct: 245 GRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFT 304

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  +   G + +   L   +  +G  P    Y  +I G+ + GQ + A   F EM+
Sbjct: 305 YNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMR 364

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  P+   Y  L+    + G   EA     ++   GL P    ++++ DG   C   D
Sbjct: 365 AMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGY--CRLGD 422

Query: 315 LAEKIELLE 323
           L E   L E
Sbjct: 423 LEEARRLKE 431


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 154/357 (43%), Gaps = 40/357 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +  M+   L  SP+TL+++ E +   G    AV  F         Q +  +N+LL  
Sbjct: 121 WALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDI 180

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC----------------------- 98
           LC+      A+ L+R  ++  F PD  +Y IL N +C                       
Sbjct: 181 LCKSNRVETAHDLLR-TLKSRFRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPT 239

Query: 99  ------------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                        S +++EA EF  EM  +     V     ++ G   AG ++ AK++ +
Sbjct: 240 MVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFD 299

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKA 205
           +M+K+G   ++ T+N+LI+  CK   V+  V ++  + + G+C+ +V T+ ++I  +   
Sbjct: 300 EMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLCHV 359

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G ++ A   +  + E G +     Y  +I+     G+ +     F +M      PN   Y
Sbjct: 360 GDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTY 419

Query: 266 TMLIT---MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +LI+   +  +    V A   L+EM E G  P    F+ V +GL   G  D A+ I
Sbjct: 420 NVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDI 476



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 102/260 (39%), Gaps = 38/260 (14%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F+ A+AL+ RM      P  +T AIL   + S GK   A      M + G +        
Sbjct: 117 FNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTFLSMHEHGLHQ------- 169

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
                                       DL +FN+L++ +CKS  VE   ++  ++ K  
Sbjct: 170 ----------------------------DLHSFNTLLDILCKSNRVETAHDLLRTL-KSR 200

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  +Y IL            A R+L  +V+ G +P    Y  ++KG FR  Q  +A+
Sbjct: 201 FRPDTVSYNILANGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAW 260

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            F+ EMK +    +   YT +I   G  G   +A     EM + G+ P    ++ +    
Sbjct: 261 EFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVF 320

Query: 308 KNCGKHDLAEKIELLEVSLR 327
             C K  +   + + E  +R
Sbjct: 321 --CKKDSVQNAVAVFEEMVR 338



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + L  S QT +++I  F   G ++  +EVF K     C   +  YN L+ A+  
Sbjct: 369 MERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFV 428

Query: 65  VKLFHG---AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            K       A  L+  M+ +GF+P K T+  ++N    +G    A++ L+  S  G
Sbjct: 429 RKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFAKDILRMQSRCG 484


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 150/341 (43%), Gaps = 37/341 (10%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P   S I++ F K G V  A++VF +  A  C+  ++ +N LL  L   +  H A  L 
Sbjct: 132 TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELF 191

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--------------- 120
           R M  +G  PD  TY  ++   C   K+ EA   L+ M  +  +P               
Sbjct: 192 RSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKF 251

Query: 121 ----------------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                                 P     +L+ GL  A     AK+M  +M  +G    + 
Sbjct: 252 ARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVV 311

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+N+L+E +  + +++  +E+ Y +       ++ TY+ILI ++ K   ++EAF+LL  +
Sbjct: 312 TYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAM 371

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            + G  P   ++  ++  + R G+ DDAF  + EM             +L+    R G  
Sbjct: 372 RDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSV 431

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EA ++L +MT+ G+ P    +D +  GL   GK D A K+
Sbjct: 432 DEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKL 472



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 5/319 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK    S   Q+  L+I  F K G         ++          +LYN+L+  LC+
Sbjct: 17  VEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCK 76

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +   A + ++RM +    P+  +Y I+++ +C +  + +A  FL+EM + G  P    
Sbjct: 77  AGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHA 135

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +VQ     G +  A  +  +M  +G   D+  FN L+  + ++ ++    E++ S+ 
Sbjct: 136 YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMN 195

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   DV TY  +I  + K   +DEA  LL  + ++   P    Y  +I  + +  +  
Sbjct: 196 SRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQ 255

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCG--RGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            A+  F +M     P   P Y++LI + G  +  R  EA     EM   G++P    ++ 
Sbjct: 256 QAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNT 315

Query: 303 VTDGLKNCGKHDLAEKIEL 321
           + +GL +  K  L + +EL
Sbjct: 316 LLEGLLSTAK--LQDAMEL 332



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 131/293 (44%), Gaps = 40/293 (13%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA- 91
           +  A E+F    +  C+  V+ YN+++  LC+ K    A  L+ RM ++   P   TY  
Sbjct: 184 IHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTT 243

Query: 92  ------------------------------------ILVNAWCSSGKMREAQEFLQEMSD 115
                                               IL+N  C + +  EA+E  QEM  
Sbjct: 244 LIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRG 303

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G +P V   + L++GLL+   L+ A ++   M+ Q    ++ T+  LI ++CK+ +VE 
Sbjct: 304 RGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQVEE 363

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             ++  ++   G    +  +++L+  +++AG +D+AF L   +     +        ++ 
Sbjct: 364 AFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLD 423

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVE 287
           G+ RRG  D+A  F  +M   G  P++  Y  L+  +C +G    + A  LVE
Sbjct: 424 GILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGK--ADQARKLVE 474



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 3/219 (1%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A+  ++EM   GF+P V+   LL++G   +G  +     +++M++ G   +   +N+LI
Sbjct: 12  QAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLI 71

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +CK+G +    E Y          +V +Y I+I    KA  I++A   L  + E GH 
Sbjct: 72  SCLCKAGMLAE-AESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHP 130

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P P  Y+ I++   + G    A   F+EM  KG  P+   + +L++   R  +  EA   
Sbjct: 131 PTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEAREL 190

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              M   G  P    ++ +  GL  C    L E + LLE
Sbjct: 191 FRSMNSRGCKPDVVTYNTMIAGL--CKWKKLDEAVFLLE 227



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 117/255 (45%), Gaps = 2/255 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF--AL 62
           +E MK  ++S +  T + +I+   K   +  A EVF K     C      Y+ L+    L
Sbjct: 226 LERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGL 285

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +    A  + + M  +G  P   TY  L+    S+ K+++A E    M D+   P +
Sbjct: 286 CKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNM 345

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+  L     +E A ++++ M  +GFV  L+ +  L+  + ++G ++   E+Y  
Sbjct: 346 FTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE 405

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++     V +  IL+  + + G +DEA   L  + + G  P    Y  ++ G+  +G+
Sbjct: 406 MSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGK 465

Query: 243 FDDAFCFFSEMKIKG 257
            D A     E+   G
Sbjct: 466 ADQARKLVEELVRDG 480



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 108/264 (40%), Gaps = 36/264 (13%)

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW------------------------ 97
           L E  L   A A++  M   GF PD +++ +L+  +                        
Sbjct: 4   LVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPN 63

Query: 98  -----------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                      C +G + EA+ +L+ M  +   P V   ++++ G   A  +E A   + 
Sbjct: 64  AILYNNLISCLCKAGMLAEAESYLKRMP-QHCAPNVVSYNIIIDGYCKARNIEKALAFLR 122

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M + G       ++S++++ CK+G V   ++++  +   G   D+  + +L+  + +A 
Sbjct: 123 EMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRAR 182

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            I EA  L  ++   G KP    Y  +I G+ +  + D+A      MK +   P    YT
Sbjct: 183 KIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYT 242

Query: 267 MLITMCGRGGRFVEAANYLVEMTE 290
            LI    +  R  +A     +M E
Sbjct: 243 TLIDHLCKFARLQQAYEVFEKMAE 266



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 1/179 (0%)

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++ L+ A  +  A+ +V +M   GF  D+++   LI    KSG  +        + + GL
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +   Y  LI  + KAGM+ EA   L  + +    P    Y  II G  +    + A  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMPQHC-APNVVSYNIIIDGYCKARNIEKALA 119

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           F  EM+  GHPP    Y+ ++    + G   +A +   EM   G  P    F+++  GL
Sbjct: 120 FLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGL 178



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K +  M+      S +   +++    + G +D+A E++ + +  NCQQ V   N LL  
Sbjct: 365 FKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDG 424

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +        A   +++M   G VPDK TY  LV   C  GK  +A++ ++E+   G
Sbjct: 425 ILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDG 480


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 127/272 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A  +F++ T       V  Y +L+  +C+      A  L+  M  +G   ++ 
Sbjct: 48  KIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQL 107

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  L++ +C  G + EA +    M  KGF   +   + +  GL      E AK+ +  M
Sbjct: 108 IYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTM 167

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           I++G V ++ ++ +LI+  CK G      +++  + K G   +  TY +LI   SK G +
Sbjct: 168 IEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRM 227

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            EA+ L   +   G  P    Y  ++ G    G+ DDA   F+E++ KG P N   YT +
Sbjct: 228 KEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAI 287

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           I+   + GR  EA     EMTE GLTP  R +
Sbjct: 288 ISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVY 319



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 114/232 (49%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L V+    + +I+ + K GL+D A +V         +  +   N++   L ++  
Sbjct: 97  MQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQ 156

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  MI KG VP+  +Y  L++ +C  G   EA++  QEM   G  P     ++
Sbjct: 157 PEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNV 216

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G ++ A ++ ++M  +G   D+ T+ SL+   C  G+++  VE++  V + G
Sbjct: 217 LIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKG 276

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           L  +V TY  +I  +SK G  +EAF+L   + E G  P   +Y  ++  + +
Sbjct: 277 LPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 102/222 (45%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +   M  KG   D   Y +++N  C  G  + A     E+++KG    V     L+ G+ 
Sbjct: 23  MFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVC 82

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            AG +E+A+ +VN+M  +G  ++   +N+LI+  CK G ++   ++   + K G   D+ 
Sbjct: 83  KAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIY 142

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T   +   + K    +EA R L  ++E G  P    Y  +I    + G F +A   F EM
Sbjct: 143 TLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEM 202

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           K  G  PN   Y +LI    + GR  EA     EM   G+ P
Sbjct: 203 KKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFP 244



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +L+   C+   F  A  L + M + G  P+  TY +L++     G+M+EA E   
Sbjct: 176 VVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRD 235

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P +     L+ G    G L+ A ++ N++ ++G  L++ T+ ++I  + K G
Sbjct: 236 EMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEG 295

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
             E   ++Y  + + GL  D   Y  L+ ++ KA
Sbjct: 296 RSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 2/132 (1%)

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V+TY +LI     +G IDE  R+   + E G K    +Y  +I    + G    AF  F 
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNC 310
           E+  KG   N   Y  LI    + G  +EAA  LV EM   GL      ++ + DG    
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGE-MEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKR 119

Query: 311 GKHDLAEKIELL 322
           G  D A K++++
Sbjct: 120 GLIDEAFKVQVI 131



 Score = 42.0 bits (97), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 54/133 (40%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + MK      +  T +++I+   K G +  A E+ ++  A      +  Y SLL   
Sbjct: 197 KLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRDEMRAKGIFPDIYTYTSLLHGE 256

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L   + +KG   +  TY  +++     G+  EA +   EM++ G  P  
Sbjct: 257 CIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDEMTEAGLTPDD 316

Query: 123 RGRDLLVQGLLNA 135
           R    LV  L  A
Sbjct: 317 RVYTSLVSSLHKA 329


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 140/308 (45%), Gaps = 37/308 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +++YN ++ + C+ +L   A  L  +++  G  PD  TY  L+  +C +G+  E ++ + 
Sbjct: 224 IVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMC 283

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM +K  NP V   ++L+      G +  A+ M N M+K+G   D+ TFN+LI   C  G
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHG 343

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V    +++ +V + G+  DV +Y ILI    K   IDEA  L + +          LY+
Sbjct: 344 NVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYS 403

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-----------------MCGR 274
            +I G+ + G+   A+  FS +   G PPN   Y +LI                  MCG+
Sbjct: 404 SLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGK 463

Query: 275 G------------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G                   R  EA N L  M    L P S  ++ + DGL  C    ++
Sbjct: 464 GLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGL--CKSGRIS 521

Query: 317 EKIELLEV 324
           +  EL +V
Sbjct: 522 DAWELFKV 529



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 138/312 (44%), Gaps = 6/312 (1%)

Query: 8   MKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +K  ++ + P  L+   +I  F + G      ++  +    N    V  +N L+ A C  
Sbjct: 248 LKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRK 307

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   M+++G  PD  T+  L++  C  G + EA++    + ++G  P V   
Sbjct: 308 GKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSY 367

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ G      ++ A  + N+M  +  VLD+  ++SLI+ +CKSG + +  E++ ++  
Sbjct: 368 TILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINN 427

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   +V TY ILI A  K   ID    L   +   G  P    Y  +I G  +  +  +
Sbjct: 428 DGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIRE 487

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVT 304
           A    S M+ K   P+   Y  L     + GR  +A   L ++  +G  P+    ++++ 
Sbjct: 488 AMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWE-LFKVMHVGGPPVDVATYNVLL 546

Query: 305 DGLKNCGKHDLA 316
           D    C   D+A
Sbjct: 547 DAF--CKAQDVA 556



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 139/306 (45%), Gaps = 2/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +++    +G V  A++  +   A       + Y +L+  LC++     A+ L++ M
Sbjct: 156 TLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEM 215

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+   Y ++++++C      +A++   ++ D G +P +     L++G    G  
Sbjct: 216 EGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQW 275

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              KQ++ +M+ +    ++ TFN LI+  C+ G++     M+  + K G   D+ T+  L
Sbjct: 276 GEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTL 335

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G + EA +L   + E G  P    Y  +I G  +  + D+A   F+EM+ K  
Sbjct: 336 ISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNM 395

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +  +Y+ LI    + GR   A      +   G  P    ++++ D    C   D+   
Sbjct: 396 VLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAF--CKIQDIDMG 453

Query: 319 IELLEV 324
           IEL ++
Sbjct: 454 IELFKL 459



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 134/298 (44%), Gaps = 11/298 (3%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            S  P+  + I+  F     +D+AV +FN          V+ +N+++ ++ ++K    A 
Sbjct: 48  FSHCPKQNAKILSSFNG---IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAI 104

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L+++M+ KG  P   T +I +N +C  G+M  A   L  +  +G+ P       +++GL
Sbjct: 105 SLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGL 164

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFCVEMYYSVCKLGL 188
              G ++ A    + +  QG +LD   + +LI  +CK G      +   EM   V K   
Sbjct: 165 CINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVK--- 221

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             ++  Y ++I +  K  +  +A  L   +V+ G  P    Y  +I+G  R GQ+ +   
Sbjct: 222 -PNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQ 280

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              EM  K   PN   + +LI    R G+ +EA      M + G  P    F+ +  G
Sbjct: 281 LMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG 338


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 127/285 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K   + +A E+        C    L++N ++ ALC+      AY  I  M
Sbjct: 12  TFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGFIETM 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY +L++ +C   K+  A E LQEM+ +G  P     +  + GL   G +
Sbjct: 72  RSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKV 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +   M ++   LD+  + +LI+ +C++G++     +   +   G       Y  +
Sbjct: 132 DDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGCYNAI 191

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   I+EA +L   +   G  P    +  ++ G  R  + DDA     +MK  G 
Sbjct: 192 LSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGL 251

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            P   +Y  LI    R GR  EA   L EM   GL+P SR + L+
Sbjct: 252 APREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 5/242 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M+   +S +  T +L+I+ F K   +  A+E+  + T    +   + YN+ L  LC+
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A AL R M  K    D   Y  L++  C +GK+ EA   L EM + G  P    
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSGCVPKPGC 187

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L     +  A ++  +M   G + D  TF  ++   C+   ++  + +   + 
Sbjct: 188 YNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMK 247

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL      Y  LI A+++AG + EA+RLL  ++  G  P    YA     + R+ Q D
Sbjct: 248 SAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYA-----LMRKQQTD 302

Query: 245 DA 246
           D+
Sbjct: 303 DS 304



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 107/246 (43%), Gaps = 2/246 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG +P   T+ ILV+  C + ++ +A E ++ M ++G  P     + ++  L   G 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A   +  M   G    + T+N LI+  CK  ++   +E+   +   G   +  TY  
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +  + K G +D+A  L   + E   +     Y  +I G+ + G+  +A+    EM+  G
Sbjct: 121 FLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P    Y  +++   +G R  EA      MT  G+ P    F ++  G   C  H + +
Sbjct: 181 CVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGY--CRGHRIDD 238

Query: 318 KIELLE 323
            + LL+
Sbjct: 239 ALLLLQ 244


>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
 gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
          Length = 540

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 39/356 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+  +  +S  T  +I+  + +   V  AVE F K ++F  +  +  YN L+ 
Sbjct: 173 VWSLVEAMRCRS-CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLID 231

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAW---------------------- 97
            L + K    A+A+ + M RKG F+PD +TY +L+  W                      
Sbjct: 232 ILSKSKQVKKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIK 291

Query: 98  -------------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
                        C SGK  EA +   EM + G  P      +L+ GL +   L+ A + 
Sbjct: 292 PDVVAYGMLISAFCKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKY 351

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
                + GF +++ T N++I   C++ E     +M   + K G+  +  TY I++  + K
Sbjct: 352 FQLSKESGFPMEVPTCNAVIGAYCRALEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIK 411

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF-RRGQFDDAFCFFSEMKIKGHPPNRP 263
           +  I+EA+ L   +  DG +P  + Y  ++ GMF    + D A   + +MK KG  P   
Sbjct: 412 SEKIEEAYNLFQRMERDGCEPELNTYTMMV-GMFCSNERVDMALKVWKQMKEKGVLPCMH 470

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +++ LI       R  EA  Y  EM + G+ P  + F  + + L   G+  LA+++
Sbjct: 471 MFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEV 526



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 123/279 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     V+ +      +  V+ Y  L+ A C+      A  +   
Sbjct: 260 KTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKSGKCDEAIKVFHE 319

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ Q   + GF   V   + ++     A  
Sbjct: 320 MEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEVPTCNAVIGAYCRALE 379

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +MV++M K G   +  T++ ++  + KS ++E    ++  + + G   +++TY +
Sbjct: 380 FHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTM 439

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++        +D A ++   + E G  P   +++ +I G+    + ++A  +F EM  KG
Sbjct: 440 MVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 499

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             P   +++ L      GGR   A      +  +  TP+
Sbjct: 500 IRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRRTPM 538



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 69/147 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M+   +  + +T  +I+    K   ++ A  +F +     C+  +  Y  ++  
Sbjct: 384 FKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTYTMMVGM 443

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C  +    A  + ++M  KG +P    ++ L+N  C   ++ EA  + QEM DKG  PP
Sbjct: 444 FCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 503

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +    L + L+  G +  A+++  ++
Sbjct: 504 GQLFSNLKEALVEGGRITLAQEVTQRL 530



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 10/197 (5%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV- 183
           ++L   G+L   +   A++      +QGF    E F++LIE + K  +      +  ++ 
Sbjct: 128 KNLSNAGILALAFFRWAER------QQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMR 181

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           C+  L  D  T+KI++   ++A  + EA      +   G K   S Y  +I  + +  Q 
Sbjct: 182 CRSCLSKD--TFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQV 239

Query: 244 DDAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             A   F EMK KG   P+   YT+L+   G     +       EM + G+ P    + +
Sbjct: 240 KKAHAIFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGM 299

Query: 303 VTDGLKNCGKHDLAEKI 319
           +       GK D A K+
Sbjct: 300 LISAFCKSGKCDEAIKV 316


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 4/323 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFA 61
           + +EL++             +I+ + K+ + D A+++F +    F CQ  +  YNSLL A
Sbjct: 64  RIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNA 123

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L E   +  A +        G  P+ +TY IL+   C   +  +A+E L  M ++GF+P 
Sbjct: 124 LIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPD 183

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+  L   GY+  A ++ ++M ++G   D+  +N LI+   K G++    E++ 
Sbjct: 184 VFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 243

Query: 182 SVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            + K   +  ++ +Y ++I  + K G  DE+F + H + ++        Y+ +I G+   
Sbjct: 244 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGS 303

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D A   + EM   G  P+  VY  ++    R GR  E       M + G   +   +
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-Y 362

Query: 301 DLVTDGLKNCGKHDLAEKI-ELL 322
           +++  GL    K D A  I ELL
Sbjct: 363 NILIRGLFENAKVDEAISIWELL 385



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 145/332 (43%), Gaps = 37/332 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +++I+ F K G + NA E++ +     +    +  YN ++  LC+   F  ++ +  RM 
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +     D  TY+ L++  C SG +  A    +EM++ G +P V   + ++ G L AG +E
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++   M K+G    + ++N LI  + ++ +V+  + ++  + +   CAD  TY +L+
Sbjct: 343 ECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLV 401

Query: 200 PAVSKAGMIDEAFRLLH-----------------------------------NLVEDGHK 224
             + K G +++A  +L                                     + + G K
Sbjct: 402 HGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P P +   +I G  R  + +DA  FF  M  KG  P    Y  LI    +  RF EA   
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 521

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           + EM   G  P    + L+ +GL    K D+A
Sbjct: 522 VKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 140/335 (41%), Gaps = 36/335 (10%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P   + +++I    K G  D + E++++       Q +  Y++L+  LC      GA
Sbjct: 250 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGA 309

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------FNPPVRG- 124
             + + M   G  PD   Y  ++N +  +G++ E  E  + M  +G      +N  +RG 
Sbjct: 310 TRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGL 369

Query: 125 ------------------RD---------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                             +D         +LV GL   GYL  A  ++ +       LD 
Sbjct: 370 FENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDT 429

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             ++S+I  +C+ G ++    +   + K G   +      +I    +A  +++A R   N
Sbjct: 430 FAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGN 489

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +V  G  P    Y  +I G+ +  +F +A+    EM  KG  PN   Y++L+    +G +
Sbjct: 490 MVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              A N   +  E G  P  +  +++  GL + GK
Sbjct: 550 LDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGK 584



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 96/176 (54%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M  +    +P   + +I  F +   +++A+  F    +  C   V+ YN+L+  L +
Sbjct: 452 LDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSK 511

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  AYAL++ M+ KG+ P+  TY++L+N  C   K+  A     +  +KGF P V+ 
Sbjct: 512 AERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM 571

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            ++++ GL ++G +E A Q+ ++M ++  V +L T N+L+E   K  + E   +++
Sbjct: 572 HNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIW 627



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 111/251 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    ++  VD A+ ++      +C    + Y  L+  LC+    + A +++   
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   Y+ ++N  C  G++ E    L +M+  G  P     + ++ G + A  L
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +    M+ +G    + T+N+LI  + K+        +   +   G   ++ TY +L
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +   +D A  L    +E G KP   ++  II G+   G+ +DA   +SEMK +  
Sbjct: 541 MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKC 600

Query: 259 PPNRPVYTMLI 269
            PN   +  L+
Sbjct: 601 VPNLVTHNTLM 611



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 134/307 (43%), Gaps = 3/307 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP  +  + ++  + + G ++  +E++       C+  V+ YN L+  L E      A 
Sbjct: 321 VSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRT-VVSYNILIRGLFENAKVDEAI 379

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++   +  K    D  TY +LV+  C +G + +A   L+E  +   +        ++ GL
Sbjct: 380 SIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGL 439

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+    ++++M K G   +    N++I    ++ ++E  +  + ++   G    V
Sbjct: 440 CREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTV 499

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  +SKA    EA+ L+  ++  G KP    Y+ ++ G+ +  + D A   + +
Sbjct: 500 VTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 559

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              KG  P+  ++ ++I      G+  +A     EM +    P     + + +G      
Sbjct: 560 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619

Query: 313 HDLAEKI 319
            + A KI
Sbjct: 620 FERASKI 626



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/241 (18%), Positives = 108/241 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL+   +      T  +++    K+G ++ A+ +  +            Y+S++  LC  
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                   ++ +M + G  P+      ++N +  + K+ +A  F   M  KG  P V   
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 502

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A     A  +V +M+ +G+  ++ T++ L+  +C+  +++  + ++    +
Sbjct: 503 NTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV  + I+I  +  +G +++A +L   + +    P    +  +++G ++   F+ 
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 246 A 246
           A
Sbjct: 623 A 623



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 91/200 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    + G +D    V ++ T   C+    + N+++           A      M+ 
Sbjct: 433 SSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVS 492

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P   TY  L+N    + +  EA   ++EM  KG+ P +    LL+ GL     L+ 
Sbjct: 493 KGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDM 552

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  + +++GF  D++  N +I  +C SG+VE  +++Y  + +     ++ T+  L+ 
Sbjct: 553 ALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLME 612

Query: 201 AVSKAGMIDEAFRLLHNLVE 220
              K    + A ++  ++++
Sbjct: 613 GFYKVRDFERASKIWDHILQ 632


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 145/317 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+E +K   + V      ++I+ + K GL D A+E F     F+C   V  YN +L  L
Sbjct: 112 QTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVL 171

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +      A  +  RM++   +P+  T++IL++  C SG +++A     EM+ +G  P  
Sbjct: 172 IQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDA 231

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +++ GL  +  ++ A ++ +KM   G   D  T N+L+   C    V+    +   
Sbjct: 232 FTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRL 291

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             K G   DV  Y  LI  + +A   ++   L   ++ED  KP   LY  ++KG+   G+
Sbjct: 292 FEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGK 351

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DA    +EM   G  P+   Y +LI      G   EA +  +E++     P  + + +
Sbjct: 352 VRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSI 411

Query: 303 VTDGLKNCGKHDLAEKI 319
           +  G+   G    A++I
Sbjct: 412 LISGMCRNGLTRDAQEI 428



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 139/305 (45%), Gaps = 17/305 (5%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           ++ K    N +  V LY  ++  L E      A  L+  M   G VPD   Y +L+  +C
Sbjct: 323 LYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFC 382

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G + EA+    E+S     P V+   +L+ G+   G    A+++ N+M K G      
Sbjct: 383 DMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAV 442

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGL--------------CADVSTYKILIPAVSK 204
           TFNSLI+ +CK+G++E    ++Y + ++G                 D ++ + ++  +  
Sbjct: 443 TFNSLIDGLCKTGQLEKAHLLFYKM-EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCD 501

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +G+I +A+R+L  L + G  P    Y  ++ G  + G F+ A+  F EM+ KG  P+   
Sbjct: 502 SGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVT 561

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           Y  LI    R  R  +A     +M + G TP +  +  +   +  C + +L     L   
Sbjct: 562 YGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWM--CRRMELPRAFSLWLK 619

Query: 325 SLRSV 329
            LR++
Sbjct: 620 YLRNI 624



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 14/268 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++++   + G V +A+E+ N+ T        + YN L+   C++ L   A +L   + R
Sbjct: 340 TIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISR 399

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+ +TY+IL++  C +G  R+AQE   EM   G  P     + L+ GL   G LE 
Sbjct: 400 HDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEK 459

Query: 141 AKQMVNKM-----------IKQG--FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           A  +  KM           + QG   VLD  +   ++E +C SG +     +   +   G
Sbjct: 460 AHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSG 519

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               + TY IL+    K G  + A++L   +   G  P    Y  +I G+ R  + +DA+
Sbjct: 520 DAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAY 579

Query: 248 CFFSEMKIKGHPPNRPVY-TMLITMCGR 274
             F +M+  G  P+  VY TM+  MC R
Sbjct: 580 KVFDQMEKNGCTPDAAVYRTMMTWMCRR 607



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 5/279 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K G V +A+ +F++ T          Y  ++  LC  K    AY L  +M
Sbjct: 198 TFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKM 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  T   L+N +C   ++ EA   L+     G+   VRG   L++GL  A   
Sbjct: 258 KDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRY 317

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +  KMI+     D+  +  +++ + ++G+V   +E+   + + G+  D   Y +L
Sbjct: 318 EDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVL 377

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I      G++ EA  L   L    H  FP++  Y+ +I GM R G   DA   F+EM+  
Sbjct: 378 IKGFCDMGLLSEARSL--QLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKL 435

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  P+   +  LI    + G+ +E A+ L    E+G  P
Sbjct: 436 GCYPSAVTFNSLIDGLCKTGQ-LEKAHLLFYKMEIGRNP 473



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 9/256 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +L  ++E+    GL+  A  +  +         +  YN L+   C++  F+GAY L R M
Sbjct: 491 SLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREM 550

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  L+N      +  +A +   +M   G  P       ++  +     L
Sbjct: 551 QFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMEL 610

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV----EMYYSVCKLGLCADVST 194
             A  +  K ++     + E   + IE   +  EVE  V    EM + +       D+  
Sbjct: 611 PRAFSLWLKYLRNIRSQEDEAIKA-IEGYFEKQEVEKAVRGLLEMDFKLNDF----DLGP 665

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y I +  + +   + EA ++   L E      P     +I  + + G  D A   F    
Sbjct: 666 YAIWLIGLCQTRRVGEALKIFLILEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTI 725

Query: 255 IKGHPPNRPVYTMLIT 270
            KG+   R V   ++T
Sbjct: 726 EKGYLLRRRVANRILT 741



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 75/170 (44%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           DL+   L+N   LE   Q +  +   G  +  + F  LI+   K G  +  +E + S+  
Sbjct: 95  DLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRD 154

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                DV TY +++  + +   +  A  +   +++    P  + ++ +I G+ + G   D
Sbjct: 155 FDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKD 214

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A   F EM  +G  P+   Y ++I+   R  R  +A     +M + G+ P
Sbjct: 215 ALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGP 264


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 141/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G+VD A E+         +  V+ YN LL AL     +     L+ +M
Sbjct: 265 TYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P+  TY+IL+   C  GK+ EA   L+ M +KG  P     D L+      G L
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  MI  G + D+  +N+++ T+CK+G+ +  +E++  + ++G   + S+Y  +
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTM 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+  +G    A  ++  ++ +G  P    Y  +I  + R G  D+AF    +M+    
Sbjct: 445 FSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEF 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +++    +  R  +A N L  M   G  P    + ++ +G+   G    AE 
Sbjct: 505 HPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYR--AEA 562

Query: 319 IEL 321
           +EL
Sbjct: 563 MEL 565



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 131/271 (48%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  YN+L+   C++     A  ++ RM  K F PD  TY I++ + CS GK+  A +
Sbjct: 155 QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALK 214

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L ++      P V    +L++  +  G ++ A +++++M+ +G   D+ T+N++I  +C
Sbjct: 215 VLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMC 274

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G V+   EM  ++   G   DV +Y IL+ A+   G  +E  +L+  +  +   P   
Sbjct: 275 KEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVV 334

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y+ +I  + R G+ ++A      MK KG  P+   Y  LI    R GR   A  +L  M
Sbjct: 335 TYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETM 394

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G  P    ++ V   L   GK D A +I
Sbjct: 395 ISDGCLPDIVNYNTVLATLCKNGKADQALEI 425



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 140/305 (45%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G VD A+++ ++  +   +  +  YN+++  +C+  +   A+ ++R +
Sbjct: 230 TYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNL 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y IL+ A  + GK  E ++ + +M  +  +P V    +L+  L   G +
Sbjct: 290 ELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKI 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++  M ++G   D  +++ LI   C+ G ++  +E   ++   G   D+  Y  +
Sbjct: 350 EEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTV 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G  D+A  +   L E G  P  S Y  +   ++  G    A     EM   G 
Sbjct: 410 LATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGI 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  +I+   R G   EA   LV+M      P    +++V  G   C  H + + 
Sbjct: 470 DPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGF--CKAHRIEDA 527

Query: 319 IELLE 323
           I +LE
Sbjct: 528 INVLE 532



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 38/341 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC------------------- 63
           +I  F K   +D+A  V ++  + +     + YN ++ +LC                   
Sbjct: 164 LINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDN 223

Query: 64  ------------EVKLFHG----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                       E  +  G    A  L+  M+ +G  PD  TY  ++   C  G +  A 
Sbjct: 224 CQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAF 283

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E ++ +  KG  P V   ++L++ LLN G  E  ++++ KM  +    ++ T++ LI T+
Sbjct: 284 EMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C+ G++E  + +   + + GL  D  +Y  LI A  + G +D A   L  ++ DG  P  
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++  + + G+ D A   F ++   G  PN   Y  + +     G  + A + ++E
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           M   G+ P    ++ +   L  C +  + E  ELL V +RS
Sbjct: 464 MMSNGIDPDEITYNSMISCL--CREGMVDEAFELL-VDMRS 501



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 135/303 (44%), Gaps = 45/303 (14%)

Query: 65  VKLFH-----GAYA----LIRRMIRKGF-------------------------------- 83
           +K+FH     G Y     L+  M+RKG+                                
Sbjct: 93  LKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEK 152

Query: 84  --VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
              PD   Y  L+N +C   ++ +A   L  M  K F+P     ++++  L + G L+ A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            +++N+++       + T+  LIE     G V+  +++   +   GL  D+ TY  +I  
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K GM+D AF ++ NL   G +P    Y  +++ +  +G++++     ++M  +   PN
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              Y++LIT   R G+  EA N L  M E GLTP +  +D +       G+ D+A  IE 
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVA--IEF 390

Query: 322 LEV 324
           LE 
Sbjct: 391 LET 393



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 98/215 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LMK   L+    +   +I  F + G +D A+E      +  C   ++ YN++L  LC+
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P+  +Y  + +A  SSG    A   + EM   G +P    
Sbjct: 416 NGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEIT 475

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A +++  M    F   + T+N ++   CK+  +E  + +  S+ 
Sbjct: 476 YNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMV 535

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
             G   + +TY +LI  +  AG   EA  L ++LV
Sbjct: 536 GNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 76/165 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+G  D A+E+F K     C      YN++  AL        A  +I  M+  G  PD+ 
Sbjct: 415 KNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEI 474

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  +++  C  G + EA E L +M    F+P V   ++++ G   A  +E A  ++  M
Sbjct: 475 TYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESM 534

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           +  G   +  T+  LIE I  +G     +E+   + ++   ++ S
Sbjct: 535 VGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAISEYS 579


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 4/323 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFA 61
           + +EL++             +I+ + K+ + D A+++F +    F CQ  +  YNSLL A
Sbjct: 64  RIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNA 123

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L E   +  A +        G  P+ +TY IL+   C   +  +A+E L  M ++GF+P 
Sbjct: 124 LIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPD 183

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+  L   GY+  A ++ ++M ++G   D+  +N LI+   K G++    E++ 
Sbjct: 184 VFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWE 243

Query: 182 SVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            + K   +  ++ +Y ++I  + K G  DE+F + H + ++        Y+ +I G+   
Sbjct: 244 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGS 303

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D A   + EM   G  P+  VY  ++    R GR  E       M + G   +   +
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVS-Y 362

Query: 301 DLVTDGLKNCGKHDLAEKI-ELL 322
           +++  GL    K D A  I ELL
Sbjct: 363 NILIRGLFENAKVDEAISIWELL 385



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 145/332 (43%), Gaps = 37/332 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +++I+ F K G + NA E++ +     +    +  YN ++  LC+   F  ++ +  RM 
Sbjct: 223 NILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +     D  TY+ L++  C SG +  A    +EM++ G +P V   + ++ G L AG +E
Sbjct: 283 KNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIE 342

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++   M K+G    + ++N LI  + ++ +V+  + ++  + +   CAD  TY +L+
Sbjct: 343 ECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLV 401

Query: 200 PAVSKAGMIDEAFRLLH-----------------------------------NLVEDGHK 224
             + K G +++A  +L                                     + + G K
Sbjct: 402 HGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCK 461

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P P +   +I G  R  + +DA  FF  M  KG  P    Y  LI    +  RF EA   
Sbjct: 462 PNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYAL 521

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           + EM   G  P    + L+ +GL    K D+A
Sbjct: 522 VKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 122/237 (51%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M  +    +P   + +I  F +   +++A+  F    +  C   V+ YN+L+  L +
Sbjct: 452 LDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSK 511

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  AYAL++ M+ KG+ P+  TY++L+N  C   K+  A     +  +KGF P V+ 
Sbjct: 512 AERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM 571

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ GL ++G +E A Q+ ++M ++  V +L T N+L+E   K  + E   +++  + 
Sbjct: 572 HNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           + G   D+ +Y I +  +     I +A   L++ V+ G  P    +  +++ +   G
Sbjct: 632 QYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNG 688



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    ++  VD A+ ++      +C    + Y  L+  LC+    + A +++   
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   Y+ ++N  C  G++ E    L +M+  G  P     + ++ G + A  L
Sbjct: 421 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKL 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +    M+ +G    + T+N+LI  + K+        +   +   G   ++ TY +L
Sbjct: 481 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLL 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +   +D A  L    +E G KP   ++  II G+   G+ +DA   +SEMK +  
Sbjct: 541 MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKC 600

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   +  L+    +   F  A+     + + G  P    +++   GL +C  H +++ 
Sbjct: 601 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSC--HRISDA 658

Query: 319 IELL 322
           +  L
Sbjct: 659 VGFL 662



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/306 (17%), Positives = 134/306 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL+   +      T  +++    K+G ++ A+ +  +            Y+S++  LC  
Sbjct: 383 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 442

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                   ++ +M + G  P+      ++N +  + K+ +A  F   M  KG  P V   
Sbjct: 443 GRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 502

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A     A  +V +M+ +G+  ++ T++ L+  +C+  +++  + ++    +
Sbjct: 503 NTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 562

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV  + I+I  +  +G +++A +L   + +    P    +  +++G ++   F+ 
Sbjct: 563 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFER 622

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   +  +   G  P+   Y + +       R  +A  +L +  + G+ P +  ++++  
Sbjct: 623 ASKIWDHILQYGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVR 682

Query: 306 GLKNCG 311
            + + G
Sbjct: 683 AVLDNG 688



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 62/118 (52%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++II      G V++A++++++     C   ++ +N+L+    +V+ F  A  +   +++
Sbjct: 573 NIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQ 632

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            G  PD  +Y I +   CS  ++ +A  FL +  D+G  P     ++LV+ +L+ G L
Sbjct: 633 YGPQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 127/257 (49%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N ++  L +      A  L+  M+ K F P+  TY IL+N +C  G++ EA E +  MS
Sbjct: 380 FNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMS 439

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG +    G + L+  L   G +E A Q+  +M  +G   D+ TFNSLI  +CK+ ++E
Sbjct: 440 AKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKME 499

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +Y+ +   G+ A+  TY  L+ A      I +AF+L+  ++  G       Y  +I
Sbjct: 500 EALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLI 559

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           K + + G  +     F EM  KG  P      +LI+   R G+  +A  +L +M   GLT
Sbjct: 560 KALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLT 619

Query: 295 PISRCFDLVTDGLKNCG 311
           P    ++ + +GL   G
Sbjct: 620 PDIVTYNSLINGLCKMG 636



 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  F K G ++ A E+ N  +A       + YN L+ ALC+      A  L   M
Sbjct: 414 TYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEM 473

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+  L+N  C + KM EA     +M  +G        + LV   L    +
Sbjct: 474 SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSI 533

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++V++M+ +G  LD  T+N LI+ +CK+G VE  + ++  +   G+   + +  IL
Sbjct: 534 QQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNIL 593

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G +++A + L +++  G  P    Y  +I G+ + G   +A   F++++ +G 
Sbjct: 594 ISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGI 653

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y  LI+     G F +A   L +  + G  P
Sbjct: 654 RPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIP 690



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 5/317 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M     S    T   ++    + G VD A  + NK    N     +LYN+L+   
Sbjct: 296 KLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPN----TVLYNTLISGY 351

Query: 63  CEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                F  A  L+   M+  G+ PD  T+ I+++     G +  A E L EM  K F P 
Sbjct: 352 VASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPN 411

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+ G    G LE A ++VN M  +G  L+   +N LI  +CK G +E  ++++ 
Sbjct: 412 VITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFG 471

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   D+ T+  LI  + K   ++EA  L H++  +G       Y  ++     R 
Sbjct: 472 EMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRD 531

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
               AF    EM  +G P +   Y  LI    + G   +      EM   G+ P     +
Sbjct: 532 SIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCN 591

Query: 302 LVTDGLKNCGKHDLAEK 318
           ++  GL   GK + A K
Sbjct: 592 ILISGLCRTGKVNDALK 608



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 5/260 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF    +      V  +  ++ ALC V     A +L+R M + G VP+   Y  L++
Sbjct: 189 APNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIH 248

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A C + ++ EA + L++M      P V+  + ++ GL  AG +  A +++++M+ +GF  
Sbjct: 249 ALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFST 308

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+  L+  +C+ G+V+    +   +       +   Y  LI     +G  +EA  LL
Sbjct: 309 DALTYGYLMHGLCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDLL 364

Query: 216 H-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           + N+V  G++P    +  +I G+ ++G    A    +EM  K   PN   YT+LI    +
Sbjct: 365 YNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCK 424

Query: 275 GGRFVEAANYLVEMTEMGLT 294
            GR  EAA  +  M+  GL+
Sbjct: 425 QGRLEEAAEIVNSMSAKGLS 444



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 138/310 (44%), Gaps = 9/310 (2%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T  ++++       VD+A  +        C    ++Y +L+ ALCE      A 
Sbjct: 201 VSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEAL 260

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M      PD +T+  +++  C +G++ EA + L  M  +GF+        L+ GL
Sbjct: 261 QLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGL 320

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY-SVCKLGLCAD 191
              G ++ A+ ++NK+     VL    +N+LI     SG  E   ++ Y ++   G   D
Sbjct: 321 CRMGQVDEARALLNKIPNPNTVL----YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD 376

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+ I+I  + K G +  A  LL+ +V    +P    Y  +I G  ++G+ ++A    +
Sbjct: 377 AYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVN 436

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  KG   N   Y  LI    + G   EA     EM+  G  P    F+ + +GL  C 
Sbjct: 437 SMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL--CK 494

Query: 312 KHDLAEKIEL 321
            H + E + L
Sbjct: 495 NHKMEEALSL 504



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 124/268 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +  M    LS++    + +I    K G ++ A+++F + +   C+  +  +NSL+  L
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A +L   M  +G + +  TY  LV+A+     +++A + + EM  +G     
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDN 552

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++ L   G +E    +  +M+ +G    + + N LI  +C++G+V   ++    
Sbjct: 553 ITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQD 612

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   GL  D+ TY  LI  + K G + EA  L + L  +G +P    Y  +I      G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           F+DA     +    G  PN   +++LI 
Sbjct: 673 FNDACLLLYKGVDSGFIPNEVTWSILIN 700



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F     +  A ++ ++     C    + YN L+ ALC+         L   M
Sbjct: 519 TYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEM 578

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   +  IL++  C +GK+ +A +FLQ+M  +G  P +   + L+ GL   G++
Sbjct: 579 LGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + NK+  +G   D  T+N+LI   C  G       + Y     G   +  T+ IL
Sbjct: 639 QEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSIL 698

Query: 199 IPAVSK 204
           I  + K
Sbjct: 699 INYIVK 704



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 7/239 (2%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P  ++Y ++++        R A     +M  +G +P V    ++++ L     ++SA  +
Sbjct: 168 PTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSL 227

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +  M K G V +   + +LI  +C++  V   +++   +  +    DV T+  +I  + +
Sbjct: 228 LRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCR 287

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           AG I EA +LL  ++  G       Y  ++ G+ R GQ D+A    +++      PN  +
Sbjct: 288 AGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIP----NPNTVL 343

Query: 265 YTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           Y  LI+     GRF EA + L   M   G  P +  F+++ DGL   G   L   +ELL
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGY--LVSALELL 400


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+ A     +   A  +   M   G  PD  TY  ++ A C  GKM +A E   +M 
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D+G  P     + L+QG    G L  AK+++++++  G  LD+  F+S+I  +CK G V 
Sbjct: 457 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 516

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++     +GL  D   Y +L+      G +++A R+   +V  G +P   +Y  ++
Sbjct: 517 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 576

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ D+    F EM  +G  P+  +Y+++I    + GR V A     EMTE G+ 
Sbjct: 577 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIA 636

Query: 295 PISRCFDLVTDGL 307
                +++V  GL
Sbjct: 637 MDICTYNIVLRGL 649



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 151/313 (48%), Gaps = 2/313 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +         ++ YNS++ ALC+ +    A A
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ K  +P+  TY  L+  + S+G+ +EA    +EM      P V    +L+  L 
Sbjct: 276 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++N ++      G +    +++  +   G+  D  
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 395

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P++  Y  LI      G  ++A   + E+   G+      F  + + L   G+ 
Sbjct: 456 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 515

Query: 314 DLAEKIELLEVSL 326
             A+ I  L V++
Sbjct: 516 MDAQNIFDLTVNV 528



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +++     TLS+++    K+G +  A +VF+          V  YN +L        
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L   M+  G  PD  T+ +L+ A+ + G + +A     EM D G  P V     
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G ++ A +  N+MI QG   D   +N LI+  C  G +    E+   +   G
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG 494

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  +  +I  + K G + +A  +    V  G  P   +Y+ ++ G    G+ + A 
Sbjct: 495 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKAL 554

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN  VY  L+    + GR  E  +   EM + G+ P +  + ++ DGL
Sbjct: 555 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 614

Query: 308 KNCGK 312
              G+
Sbjct: 615 FQAGR 619



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 196 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 254

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY  +V+A C +  M +A+ FL++M +K   P     + L+ G  + G  + A ++  +
Sbjct: 255 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +   + D+ T + L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    ++ +  G   C    L +  EL+ 
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF--CTHGSLLKAKELIS 488



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 163

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V   +
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 223

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   DL T+NS++  +CK+  ++        +   
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 283

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +  TY  LI   S  G   EA R+   +      P     + ++  + + G+  +A
Sbjct: 284 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   Y +++      G  V+  +    M   G+ P    F+++   
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 403

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 404 YANCGMLDKA 413



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 118/275 (42%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G V +A  +F+           ++Y+ L+   C V     A  +   M+
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  +G  P      +++ GL  AG   
Sbjct: 562 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 621

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  +D+ T+N ++  + K+   +  + ++  +  + +  ++ T   +I
Sbjct: 622 PAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + +   ++EA  L  ++      P    Y+ +I  + + G  ++A   FS M+  G  
Sbjct: 682 DGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           PN  +   ++    +    V A  YL ++ E   +
Sbjct: 742 PNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 776



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 122/281 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F  HG +  A E+ ++         ++ ++S++  LC++     A  +    +  G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD   Y++L++ +C  GKM +A      M   G  P V     LV G    G ++   
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGL 589

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M+++G       ++ +I+ + ++G        ++ + + G+  D+ TY I++  +
Sbjct: 590 SLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGL 649

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   L     K        +I GMF+  + ++A   F+ +      P+ 
Sbjct: 650 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSV 709

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             Y+++IT   + G   EA +    M   G  P SR  + V
Sbjct: 710 VTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHV 750



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 123/244 (50%), Gaps = 2/244 (0%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N+ + P  +  S++++ +   G ++ A+ VF+   +   +  V++Y +L+   C++    
Sbjct: 527 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 586

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              +L R M+++G  P    Y+I+++    +G+   A+    EM++ G    +   ++++
Sbjct: 587 EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVL 646

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL      + A  +  ++      +++ T N++I+ + ++  VE   +++ S+ +  L 
Sbjct: 647 RGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV 706

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY I+I  + K G+++EA  +  ++   G +P   L   +++ + ++ +   A  +
Sbjct: 707 PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 766

Query: 250 FSEM 253
            S++
Sbjct: 767 LSKI 770


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 125/258 (48%), Gaps = 1/258 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+  ++  F +   V +AV + +K      +  ++ YN+++ +LC+ K  + A+   + +
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY  LVN  C+S +  +A   L +M  K   P V     L+   +  G +
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M++     D+ T++SLI  +C    ++   +M+  +   G  ADV +Y  L
Sbjct: 277 LEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +++  +L   + + G       Y  +I+G F+ G  D A  FFS+M   G 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 259 PPNRPVYTMLI-TMCGRG 275
            P+   Y +L+  +C  G
Sbjct: 397 SPDIWTYNILLGGLCDNG 414



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 2/295 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V++A + F +      +  V+ Y +L+  LC    +  A  L+  MI+K 
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L++A+  +GK+ EA+E  +EM     +P +     L+ GL     ++ A 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 315

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM + M+ +G + D+ ++N+LI   CK+  VE  ++++  + + GL ++  TY  LI   
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG +D+A      +   G  P    Y  ++ G+   G+ + A   F +M+ +    + 
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDI 435

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             YT +I    + G+  EA +    ++  GL P    +  +  GL  C K  L E
Sbjct: 436 VTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL--CTKGLLHE 488



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 123/243 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ F K+G V  A E+F +    +    ++ Y+SL+  LC       A  +   M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG + D  +Y  L+N +C + ++ +  +  +EMS +G        + L+QG   AG +
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++  ++M   G   D+ T+N L+  +C +GE+E  + ++  + K  +  D+ TY  +
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G ++EA+ L  +L   G KP    Y  ++ G+  +G   +    +++MK +G 
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

Query: 259 PPN 261
             N
Sbjct: 502 MKN 504



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C       A +L+ +M+  G+ PD   Y  ++++ C + ++ +A +F +E+  K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V     LV GL N+     A ++++ MIK+    ++ T+++L++   K+G+V   
Sbjct: 220 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 279

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E++  + ++ +  D+ TY  LI  +     IDEA ++   +V  G       Y  +I G
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +  + +D    F EM  +G   N   Y  LI    + G   +A  +  +M   G++P 
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
              ++++  GL  C   +L + + + E
Sbjct: 400 IWTYNILLGGL--CDNGELEKALVIFE 424



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 2/226 (0%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+ +A +   +M      P +   + L+  ++     +    +  KM   G   DL TFN
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I   C   +V   + +   + KLG   D  T   L+    +   + +A  L+  +VE 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G+KP    Y  II  + +  + +DAF FF E++ KG  PN   YT L+       R+ +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           A  L +M +  +TP    +  + D     GK  + E  EL E  +R
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGK--VLEAKELFEEMVR 288



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 35/275 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A+++F+          ++ +N LL A+ ++K +    +L ++M   G   D  T+ I
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N +C   ++  A   L                                    KM+K G
Sbjct: 126 VINCFCCCFQVSLALSIL-----------------------------------GKMLKLG 150

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  T  SL+   C+   V   V +   + ++G   D+  Y  +I ++ K   +++AF
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                +   G +P    Y  ++ G+    ++ DA    S+M  K   PN   Y+ L+   
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            + G+ +EA     EM  M + P    +  + +GL
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T + +I+ F + G VD A E F++   F     +  YN LL  LC+   
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M ++    D  TY  ++   C +GK+ EA      +S KG  P +     
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV 154
           ++ GL   G L   + +  KM ++G +
Sbjct: 476 MMSGLCTKGLLHEVEALYTKMKQEGLM 502


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 133/273 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   VDNA+++ N+         V+ YNSL+  LC    +  A  ++  M ++ 
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE 251

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T+  L++A    G++ EA+EF +EM  +  +P +    LL+ GL     L+ A+
Sbjct: 252 IYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +M   M+ +G   D+ T++ LI   CKS +VE  ++++  + + G+  +  TY ILI   
Sbjct: 312 EMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGY 371

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG ++ A  +   +V  G  P    Y  ++ G+   G+ + A    ++M+  G   + 
Sbjct: 372 CRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADI 431

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             Y ++I    + G   +A +    +   GL P
Sbjct: 432 VTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMP 464



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 143/317 (45%), Gaps = 5/317 (1%)

Query: 1   MWKTIELMK-PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W+ ++++  P+NL     T ++++  F +   +  A+    K      +  ++ + SLL
Sbjct: 103 LWEQMQMLGIPHNLC----TCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C     + A  +  +M+  G+ P+   Y  +++  C S ++  A + L  M   G  
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V   + L+ GL ++G    A +MV+ M K+    D+ TFN+LI+   K G V    E 
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y  + +  L  D+ TY +LI  +     +DEA  +   +V  G  P    Y+ +I G  +
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             + +     F EM  +G   N   YT+LI    R G+   A      M   G+ P    
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398

Query: 300 FDLVTDGLKNCGKHDLA 316
           ++++  GL + GK + A
Sbjct: 399 YNVLLHGLCDNGKIEKA 415



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 120/264 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N LL   C       A + + +MI+ G  P   T+  L+N +C   ++ +A     +M  
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G+ P V   + ++ GL  +  +++A  ++N+M K G   D+ T+NSLI  +C SG    
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              M   + K  +  DV T+  LI A  K G + EA      ++     P    Y+ +I 
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+    + D+A   F  M  KG  P+   Y++LI    +  +         EM++ G+  
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
            +  + ++  G    GK ++AE+I
Sbjct: 360 NTVTYTILIQGYCRAGKLNVAEEI 383



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 108/214 (50%), Gaps = 2/214 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T SL+I     +  +D A E+F    +  C   V+ Y+ L+   C+ K     
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   M ++G V +  TY IL+  +C +GK+  A+E  + M   G +P +   ++L+ G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHG 405

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L + G +E A  ++  M K G   D+ T+N +I  +CK+GEV    ++Y S+   GL  D
Sbjct: 406 LCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPD 465

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           + TY  ++  + K G+  EA  L   + EDG  P
Sbjct: 466 IWTYTTMMLGLYKKGLRREADALFRKMKEDGILP 499



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 136/302 (45%), Gaps = 11/302 (3%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLL-----YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           +D+++++F     F+  QC  L     ++ LL A+ ++K +     L  +M   G   + 
Sbjct: 62  LDDSLDLF-----FHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNL 116

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            T  IL+N +C   ++  A  FL +M   G  P +     L+ G      +  A  M ++
Sbjct: 117 CTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQ 176

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M+  G+  ++  +N++I+ +CKS +V+  +++   + K G+  DV TY  LI  +  +G 
Sbjct: 177 MVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGR 236

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
             +A R++  + +    P    +  +I    + G+  +A  F+ EM  +   P+   Y++
Sbjct: 237 WSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSL 296

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           LI       R  EA      M   G  P    + ++ +G     K +   K+   E+S R
Sbjct: 297 LIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL-FCEMSQR 355

Query: 328 SV 329
            V
Sbjct: 356 GV 357


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 122/253 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+ A     +   A  +   M   G  PD  TY  ++ A C  GKM +A E   +M 
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D+G  P     + L+QG    G L  AK+++++++  G  LD+  F+S+I  +CK G V 
Sbjct: 470 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 529

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++     +GL  D   Y +L+      G +++A R+   +V  G +P   +Y  ++
Sbjct: 530 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 589

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ D+    F EM  +G  P+  +Y+++I    + GR V A     EMTE G+ 
Sbjct: 590 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIA 649

Query: 295 PISRCFDLVTDGL 307
                +++V  GL
Sbjct: 650 MDICTYNIVLRGL 662



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 151/313 (48%), Gaps = 2/313 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +         ++ YNS++ ALC+ +    A A
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ K  +P+  TY  L+  + S+G+ +EA    +EM      P V    +L+  L 
Sbjct: 289 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 348

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++N ++      G +    +++  +   G+  D  
Sbjct: 349 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 408

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 409 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 468

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P++  Y  LI      G  ++A   + E+   G+      F  + + L   G+ 
Sbjct: 469 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 528

Query: 314 DLAEKIELLEVSL 326
             A+ I  L V++
Sbjct: 529 MDAQNIFDLTVNV 541



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 131/305 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +++     TLS+++    K+G +  A +VF+          V  YN +L        
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L   M+  G  PD  T+ +L+ A+ + G + +A     EM D G  P V     
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 447

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G ++ A +  N+MI QG   D   +N LI+  C  G +    E+   +   G
Sbjct: 448 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG 507

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  +  +I  + K G + +A  +    V  G  P   +Y+ ++ G    G+ + A 
Sbjct: 508 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKAL 567

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN  VY  L+    + GR  E  +   EM + G+ P +  + ++ DGL
Sbjct: 568 RVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 627

Query: 308 KNCGK 312
              G+
Sbjct: 628 FQAGR 632



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 139/296 (46%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 209 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 267

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY  +V+A C +  M +A+ FL++M +K   P     + L+ G  + G  + A ++  +
Sbjct: 268 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 327

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +   + D+ T + L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 447

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    ++ +  G   C    L +  EL+ 
Sbjct: 448 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF--CTHGSLLKAKELIS 501



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 117 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 176

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V   +
Sbjct: 177 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 236

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   DL T+NS++  +CK+  ++        +   
Sbjct: 237 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 296

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +  TY  LI   S  G   EA R+   +      P     + ++  + + G+  +A
Sbjct: 297 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 356

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   Y +++      G  V+  +    M   G+ P    F+++   
Sbjct: 357 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 416

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 417 YANCGMLDKA 426



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 150/377 (39%), Gaps = 70/377 (18%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    +LM    ++    T +++I+ +   G++D A+ +FN+      +  V+ Y +++ 
Sbjct: 391 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 450

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC +     A     +MI +G  PDK  Y  L+  +C+ G + +A+E + E+ + G + 
Sbjct: 451 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL 510

Query: 121 PV------------RGR------------------DLLVQGLLNAGY-----LESAKQMV 145
            +             GR                  D +V  +L  GY     +E A ++ 
Sbjct: 511 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVF 570

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           + M+  G   ++  + +L+   CK G ++  + ++  + + G+      Y I+I  + +A
Sbjct: 571 DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQA 630

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK----------- 254
           G    A    H + E G       Y  +++G+F+   FD+A   F E++           
Sbjct: 631 GRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 690

Query: 255 ---IKGH---------------------PPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
              I G                       PN   Y+++IT   + G   EA +    M  
Sbjct: 691 NTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQN 750

Query: 291 MGLTPISRCFDLVTDGL 307
            G  P SR  + V   L
Sbjct: 751 AGCEPNSRLLNHVVREL 767



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 118/275 (42%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G V +A  +F+           ++Y+ L+   C V     A  +   M+
Sbjct: 515 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 574

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  +G  P      +++ GL  AG   
Sbjct: 575 SAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTV 634

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  +D+ T+N ++  + K+   +  + ++  +  + +  ++ T   +I
Sbjct: 635 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 694

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + +   ++EA  L  ++      P    Y+ +I  + + G  ++A   FS M+  G  
Sbjct: 695 DGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 754

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           PN  +   ++    +    V A  YL ++ E   +
Sbjct: 755 PNSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFS 789



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/276 (18%), Positives = 133/276 (48%), Gaps = 2/276 (0%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N+ + P  +  S++++ +   G ++ A+ VF+   +   +  V++Y +L+   C++    
Sbjct: 540 NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRID 599

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              +L R M+++G  P    Y+I+++    +G+   A+    EM++ G    +   ++++
Sbjct: 600 EGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVL 659

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL      + A  +  ++      +++ T N++I+ + ++  VE   +++ S+ +  L 
Sbjct: 660 RGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV 719

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY I+I  + K G+++EA  +  ++   G +P   L   +++ + ++ +   A  +
Sbjct: 720 PNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 779

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            S++  +          +L+ +    G   E   +L
Sbjct: 780 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 815


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 138/298 (46%), Gaps = 8/298 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG----AYALIRRM 78
           +I+  GK G +D+A  +F K          ++Y SL+         HG     + + + M
Sbjct: 461 LIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNF----FMHGRKEDGHKIYKEM 516

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+G  PD       ++    +G++ + +   ++M   GF P VR   +L+ GL  AG  
Sbjct: 517 IRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQA 576

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +   M +QGF LD   +N++++ +CKSG+V+   E+   +    +   V+TY  +
Sbjct: 577 RETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSI 636

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  ++K   +DEA+ L       G +    LY+ +I G  + G+ D+A+    EM  KG 
Sbjct: 637 VDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGL 696

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   +  L+    +     EA      M EM  +P +  + ++ +GL    K++ A
Sbjct: 697 TPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKA 754



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 132/284 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+    +F    +F     V  Y+ L+  L +         + + M ++GF  D R
Sbjct: 537 KAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDAR 596

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  +V+  C SGK+ +A E L+EM  K  +P V     +V GL     L+ A  +  + 
Sbjct: 597 AYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEA 656

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G  L++  ++SLI+   K G ++    +   + K GL  +V T+  L+ A+ K   I
Sbjct: 657 KSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEI 716

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA     ++ E    P    Y+ +I G+ R  +++ AF F+ EM+ +G  PN   YT +
Sbjct: 717 DEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTM 776

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I+   + G   +A +        G  P S  F+ + +G+ N  +
Sbjct: 777 ISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANR 820



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 156/363 (42%), Gaps = 37/363 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K + L     + + ++    K G +  A E+F +  A     C   YN+++  
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMG 325

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
               + F  AY L+ R+  +G +P   ++  ++       K+ EA      M  K   P 
Sbjct: 326 YGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMK-KDAKPN 384

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++++  L  AG +  A ++ ++M   G   +L + N +++ +CK+ ++E    ++ 
Sbjct: 385 ISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFE 444

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S  + G   +  TY  LI  + K G ID+A+RL   +++ GH   P +Y  +I+  F  G
Sbjct: 445 SASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHG 504

Query: 242 QFDDAF-----------------------------------CFFSEMKIKGHPPNRPVYT 266
           + +D                                       F +MK  G  P+   Y+
Sbjct: 505 RKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYS 564

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
           +LI    + G+  E +N    M++ G    +R ++ V DGL   GK D A ++ L E+ +
Sbjct: 565 ILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEV-LEEMKV 623

Query: 327 RSV 329
           + V
Sbjct: 624 KHV 626



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 138/298 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +++++++   K   ++ A  +F   +   C    + Y SL+  L +      AY L  +M
Sbjct: 422 SVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKM 481

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G   +   Y  L+  +   G+  +  +  +EM  +G  P +   +  +  +  AG +
Sbjct: 482 LDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEV 541

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +   M   GF+ D+ +++ LI  + K+G+      ++ ++ + G   D   Y  +
Sbjct: 542 EKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAV 601

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K+G +D+A+ +L  +      P  + Y  I+ G+ +  + D+A+  F E K KG 
Sbjct: 602 VDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGI 661

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N  +Y+ LI   G+ GR  EA   L EM + GLTP    ++ + D L    + D A
Sbjct: 662 ELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEA 719



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 140/310 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  E M       +P   + +I  F  HG  ++  +++ +      +  + L N+ +  
Sbjct: 475 YRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDC 534

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           + +        A+   M   GF+PD R+Y+IL++    +G+ RE     Q MS +GF   
Sbjct: 535 VFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALD 594

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            R  + +V GL  +G ++ A +++ +M  +     + T+ S+++ + K   ++    ++ 
Sbjct: 595 ARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFE 654

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                G+  +V  Y  LI    K G IDEA+ +L  +++ G  P    +  ++  + +  
Sbjct: 655 EAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTE 714

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A   F  MK     PN   Y++LI    R  ++ +A  +  EM + GL P    + 
Sbjct: 715 EIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYT 774

Query: 302 LVTDGLKNCG 311
            +  GL   G
Sbjct: 775 TMISGLAKVG 784



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 118/276 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK +      ++ S++I    K G       +F   +          YN+++  LC+ 
Sbjct: 549 EDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKS 608

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY ++  M  K   P   TY  +V+      ++ EA    +E   KG    V   
Sbjct: 609 GKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILY 668

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +M+K+G   ++ T+NSL++ + K+ E++  +  + S+ +
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE 728

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +    +  TY ILI  + +    ++AF     + + G  P    Y  +I G+ + G   D
Sbjct: 729 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           A+  F   K  G  P+   +  LI       R +EA
Sbjct: 789 AYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEA 824



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + M     ++  +  + +++   K G VD A EV  +    +    V  Y S++  L ++
Sbjct: 584 QAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKI 643

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY L      KG   +   Y+ L++ +   G++ EA   L+EM  KG  P V   
Sbjct: 644 DRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTW 703

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+  L+    ++ A      M +     +  T++ LI  +C+  +       +  + K
Sbjct: 704 NSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQK 763

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  +V TY  +I  ++K G I +A+ L      +G  P  + +  +I+GM    +  +
Sbjct: 764 QGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPME 823

Query: 246 AFCFFSEMKIKG 257
           A+  F E +++G
Sbjct: 824 AYQVFEETRLRG 835



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 118/263 (44%), Gaps = 1/263 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+  L   +    A+ +I  M    F P    Y +L+ A   + +   A E L++M D 
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDV 205

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+   V     LV+ L   G +E A  +V+++       D+  +N  I+   K+G V+  
Sbjct: 206 GYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMA 265

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            + ++ +   GL  D  +Y  ++  + KAG + EA  L   +  +   P    Y  +I G
Sbjct: 266 WKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMG 325

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
                +FDDA+     ++ +G  P+   +  ++T  G+  R V+ A  L ++ +    P 
Sbjct: 326 YGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGK-KRKVDEALTLFDVMKKDAKPN 384

Query: 297 SRCFDLVTDGLKNCGKHDLAEKI 319
              ++++ D L   G+ + A KI
Sbjct: 385 ISTYNIIIDMLCMAGRVNEAYKI 407



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 113/269 (42%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+ AL E +    A  L+R+M   G+      +  LV A    G+M  A   + E+ 
Sbjct: 179 YTVLIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVK 238

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P +   ++ +     AG ++ A +  +++   G   D  ++ S++  +CK+G + 
Sbjct: 239 GSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLG 298

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  +           Y  +I     A   D+A++LL  L E G  P    +  I+
Sbjct: 299 EAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSIL 358

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + ++ + D+A   F  MK K   PN   Y ++I M    GR  EA     EM   GL 
Sbjct: 359 TCLGKKRKVDEALTLFDVMK-KDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLF 417

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P     +++ D L  C  + L E   + E
Sbjct: 418 PNLLSVNIMVDRL--CKANQLEEAHRIFE 444



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 2/234 (0%)

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           A LV     S ++ +A   +  M    F PP     +L+  L  A   E A +++ +M  
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQD 204

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G+ + +  F +L+  + + G++E  + +   V    L  D+  Y + I    KAG +D 
Sbjct: 205 VGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDM 264

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A++  H L   G +P    Y  ++  + + G+  +A   F +M+ +   P    Y  +I 
Sbjct: 265 AWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIM 324

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             G   RF +A   L  + E G  P    F+ +   L    K D  E + L +V
Sbjct: 325 GYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD--EALTLFDV 376



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 131/332 (39%), Gaps = 71/332 (21%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI------------------ 75
           + A+E+  +      +  V L+ +L+ AL        A AL+                  
Sbjct: 193 ERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVC 252

Query: 76  -----------------RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
                              +   G  PD  +Y  +V   C +G++ EA+E   +M  +  
Sbjct: 253 IDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERD 312

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P     + ++ G  +A   + A +++ ++ ++G +  + +FNS++  + K  +V+  + 
Sbjct: 313 VPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALT 372

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH---------------------- 216
           + + V K     ++STY I+I  +  AG ++EA+++                        
Sbjct: 373 L-FDVMKKDAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLC 431

Query: 217 --NLVEDGHKPFPS-----------LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             N +E+ H+ F S            Y  +I G+ ++G+ DDA+  F +M   GH  N  
Sbjct: 432 KANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPI 491

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +YT LI      GR  +      EM   G  P
Sbjct: 492 IYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRP 523



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK  ++  +  T   I++   K   +D A  +F +  +   +  V+LY+SL+  
Sbjct: 615 YEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDG 674

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++A   + ++ EA    Q M +   +P 
Sbjct: 675 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPN 734

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQG + ++ T+ ++I  + K G +     ++ 
Sbjct: 735 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFE 794

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D +++  LI  +S A    EA+++  
Sbjct: 795 RFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFE 829



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 85/191 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I+ FGK G +D A  +  +         V  +NSL+ AL + +    A    + M  
Sbjct: 669 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKE 728

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+  TY+IL+N  C   K  +A  F QEM  +G  P V     ++ GL   G +  
Sbjct: 729 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITD 788

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  +    G + D  +FN+LIE +  +       +++      G   +V T   L+ 
Sbjct: 789 AYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLD 848

Query: 201 AVSKAGMIDEA 211
           A++K   +++A
Sbjct: 849 ALNKTECLEQA 859



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 94/213 (44%)

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++ L+EMS  G+  P      LV  L+ +  LE A +++  M    F      +  LI  
Sbjct: 126 EKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGA 185

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           + ++ + E  +E+   +  +G    V  +  L+ A+++ G ++ A  L+  +     +P 
Sbjct: 186 LAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPD 245

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             LY   I    + G  D A+ FF E+K  G  P+   YT ++ +  + GR  EA     
Sbjct: 246 IVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFG 305

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +M      P +  ++ +  G  +  + D A K+
Sbjct: 306 QMEAERDVPCAYAYNTMIMGYGSAERFDDAYKL 338



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 76/166 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L+ +  T + +++   K   +D A+  F       C      Y+ L+  LC 
Sbjct: 688 LEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCR 747

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V+ ++ A+   + M ++G +P+  TY  +++     G + +A    +     G  P    
Sbjct: 748 VQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSAS 807

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            + L++G+ NA     A Q+  +   +G  L+++T  SL++ + K+
Sbjct: 808 FNALIEGMSNANRPMEAYQVFEETRLRGCRLNVKTCISLLDALNKT 853



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 73/158 (46%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L + ++++ +M   G+ L      +L+ T+ +S  +E    +  ++  L      S Y +
Sbjct: 122 LAALEKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTV 181

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+++A   + A  LL  + + G++    L+  +++ + R GQ + A     E+K   
Sbjct: 182 LIGALAEARQPERALELLRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSC 241

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+  +Y + I   G+ G    A  +  E+   GL P
Sbjct: 242 LEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRP 279


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 145/308 (47%), Gaps = 2/308 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEF-GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           ++ +E +    +  S      II+    K+  V+ A +V     A      VL++N ++ 
Sbjct: 181 FRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVIN 240

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+ K    AY L+  MI KG VP+  T+ IL+   C + ++ EAQ+ L++M   G +P
Sbjct: 241 GFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSP 300

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V     ++ GL   G ++ A ++   M ++    ++ T N LI+ +CK+  +E   ++Y
Sbjct: 301 NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLY 360

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFR 239
           + + + G   D+ TY  LI  + K+  +DEAF+L   + E G     ++ Y+ +  G   
Sbjct: 361 HRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAA 420

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  DA   FS +  KG  P+   YT LI    +  R VE    + EM   G  P    
Sbjct: 421 LGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNT 480

Query: 300 FDLVTDGL 307
              V  GL
Sbjct: 481 LSAVLGGL 488



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 139/298 (46%), Gaps = 1/298 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            +L+I  F K   +D+A ++        C   V  +  L+  LC+      A  L+ +M+
Sbjct: 235 FNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMV 294

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+  TY+ ++N  C  G++ +A E  Q M  +   P V   ++L+ GL  A  +E
Sbjct: 295 MGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIE 354

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL-CADVSTYKIL 198
            A+Q+ ++M + G   D+ T+NSLI+ +CKS +V+   +++ ++ + G+  A+  TY  L
Sbjct: 355 EARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTL 414

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
               +  G + +A R+   LV+ G  P  + Y  +I    +  +  +      EM  KG 
Sbjct: 415 FHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGF 474

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PP     + ++     G     A      M   G T  +  ++LV +G+    KHD A
Sbjct: 475 PPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKA 532



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 39/342 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I  F   G +D A+++  +  +   +   +++ +L+  LC+      A    R M
Sbjct: 59  TYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM 118

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   PD  TY  LV+A C +GK  EAQ  L+EM  +G  P       L+ GL   G  
Sbjct: 119 A-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSE 177

Query: 139 ESA-----------------------KQMVNK-------------MIKQGFVLDLETFNS 162
           E A                       +++ NK             +I +GF   +  FN 
Sbjct: 178 EQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNL 237

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I   CK+ +++   ++   + + G   +V T+ ILI  + KA  + EA +LL  +V  G
Sbjct: 238 VINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG 297

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y+ +I G+ ++GQ DDA+  F  M+ +  PPN   + +LI    +  R  EA 
Sbjct: 298 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 357

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
                M E G  P    ++ + DGL  C    + E  +L + 
Sbjct: 358 QLYHRMRETGCAPDIITYNSLIDGL--CKSFQVDEAFQLFQT 397



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 43/367 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  +LM+  N   +  T +++I+   K   ++ A +++++     C   ++ YNSL+  
Sbjct: 322 YELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDG 381

Query: 62  LCEV---------------------------KLFHGAYALIRRM----------IRKGFV 84
           LC+                             LFHG YA + RM          + KGF 
Sbjct: 382 LCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG-YAALGRMADACRIFSMLVDKGFS 440

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY  L+  +C + +  E  E ++EM+ KGF P V     ++ GL    + E A Q+
Sbjct: 441 PDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQL 500

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK---LGLCADVSTYKILIPA 201
            + M  +G   D   +N ++E + ++ + +  + +   V            S    L+ +
Sbjct: 501 FDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVES 560

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + + G  D+A +LLH + E G     S Y  ++ G+ R  ++D+A   F  M   G  P 
Sbjct: 561 LCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPE 620

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI-- 319
                ++I+      +  +A   +  M+++G  P     + +  G    G+ DLA K+  
Sbjct: 621 ISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLE 680

Query: 320 ELLEVSL 326
           E+ E  L
Sbjct: 681 EMTEAGL 687



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 6/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    K G VD+A E+F      NC   V+ +N L+  LC+ K    A  L  RM
Sbjct: 304 TYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRM 363

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQGLLNAGY 137
              G  PD  TY  L++  C S ++ EA +  Q + + G +         L  G    G 
Sbjct: 364 RETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGR 423

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A ++ + ++ +GF  DL T+ SLI   CK+      VE+   +   G    V+T   
Sbjct: 424 MADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSA 483

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM---- 253
           ++  + +    + A +L  ++   G      +Y  +++GM R  + D A     ++    
Sbjct: 484 VLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKR 543

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             K +P +  V  ++ ++C + G+  +A   L +M+E G       ++ +  GL    + 
Sbjct: 544 DRKFNPSSSAVDALVESLC-QVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRW 602

Query: 314 DLAEKI 319
           D A ++
Sbjct: 603 DEATQV 608



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 3/211 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            TLS ++    +    + A+++F+   A  C    L+YN ++  +        A A++ +
Sbjct: 479 NTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQ 538

Query: 78  MIRK---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +I K    F P       LV + C  GK  +A++ L +MS++GF   V   + L+ GL  
Sbjct: 539 VIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSR 598

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
               + A Q+   M+  G   ++ T N +I  +C + +V+   E+   + KLG C D+ T
Sbjct: 599 LQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIET 658

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
              LI    K+G  D A +LL  + E G +P
Sbjct: 659 CNTLIGGYCKSGRADLARKLLEEMTEAGLEP 689



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 130/304 (42%), Gaps = 36/304 (11%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N  L  LC +     A AL R  + +  +P+K TY IL+  + S+G +  A + L+EM  
Sbjct: 26  NCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS 85

Query: 116 KGFN----------------------------------PPVRGRDLLVQGLLNAGYLESA 141
            GF                                   P V     LV  L  AG  + A
Sbjct: 86  SGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEA 145

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           + M+ +M+ QG   D  TF++LI+ +CK G  E    +   V + G+    + ++ +I  
Sbjct: 146 QGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQR 205

Query: 202 V-SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           + +K   ++ A ++L  ++  G  P   ++  +I G  +    D A+     M  KG  P
Sbjct: 206 LCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVP 265

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKI 319
           N   +T+LIT   +  R  EA   L +M   G +P    +  V +GL   G+ D A E  
Sbjct: 266 NVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELF 325

Query: 320 ELLE 323
           +L+E
Sbjct: 326 QLME 329



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 137/322 (42%), Gaps = 4/322 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K +E+M       +  T +++I    K   V  A ++  K     C   V+ Y++++  
Sbjct: 252 YKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVING 311

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      AY L + M R+   P+  T+ IL++  C + ++ EA++    M + G  P 
Sbjct: 312 LCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPD 371

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF-VLDLETFNSLIETICKSGEVEFCVEMY 180
           +   + L+ GL  +  ++ A Q+   + + G    +  T+++L       G +     ++
Sbjct: 372 IITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIF 431

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   D++TY  LI    K     E   L+  +   G  P  +  + ++ G+F  
Sbjct: 432 SMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEG 491

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL---VEMTEMGLTPIS 297
              + A   F  M  +G   +  +Y +++    R  +  +A   L   ++  +    P S
Sbjct: 492 NHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSS 551

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
              D + + L   GK D A+++
Sbjct: 552 SAVDALVESLCQVGKTDDAKQL 573



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 8/210 (3%)

Query: 67  LFHG-----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK---GF 118
           LF G     A  L   M  +G   D   Y ++V     + K  +A   L+++ DK    F
Sbjct: 488 LFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKF 547

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NP     D LV+ L   G  + AKQ+++KM ++GF   + ++N L+  + +    +   +
Sbjct: 548 NPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQ 607

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++ ++   G   ++ST  ++I  +  A  +D+A+ L+  + + G  P       +I G  
Sbjct: 608 VFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYC 667

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + G+ D A     EM   G  PN   + +L
Sbjct: 668 KSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S   +  ++E   + G  D+A ++ +K +       V  YN LL  L  ++ +  A  + 
Sbjct: 550 SSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVF 609

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+  G  P+  T  ++++  CS+ K+ +A E +Q MS  G  P +   + L+ G   +
Sbjct: 610 EAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKS 669

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           G  + A++++ +M + G   + +T + L+E
Sbjct: 670 GRADLARKLLEEMTEAGLEPN-DTTHDLLE 698


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 139/294 (47%), Gaps = 3/294 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
            VS +TL   I    K G       +  K    + +  V++YN+++ +LC+ KL   A  
Sbjct: 168 QVSYRTL---INGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACD 224

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   MI KG  P+  TY  LV  +C  G ++EA   L EM  K  NP V   + L+  L 
Sbjct: 225 LYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALG 284

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G +++AK ++  M+K     D+ T+NSLI+      +V+    ++YS+ + G+  +V 
Sbjct: 285 KEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVR 344

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  +I  + K  M+DEA  L   +      P    Y  +I G+ +    + A     +M
Sbjct: 345 TYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKM 404

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           K +G  P+   YT+L+    +GGR   A  +   +   G     + ++++ +GL
Sbjct: 405 KEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGL 458



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 23/335 (6%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +     + +++++   K G ++NA E F +         V  YN ++  LC+  L
Sbjct: 404 MKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADL 463

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR-- 125
           F  A  L  +M  KG +PD  T+  ++ A     +  +A++ L+EM  +G     + R  
Sbjct: 464 FGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLK 523

Query: 126 ----------------DLLVQGLLNAGY-----LESAKQMVNKMIKQGFVLDLETFNSLI 164
                           D++  G L  GY     L+ AK +   M + G   +++ +  +I
Sbjct: 524 EAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMI 583

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           + +CK   V+  + ++  +    +  ++ TY  LI A+ K   ++ A  LL  + E G +
Sbjct: 584 DGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQ 643

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  ++ G+ + G+ + A   F  + +KG+  N  VYT +I    + G F EA + 
Sbjct: 644 PDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDL 703

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             +M + G  P +  FD++   L    ++D AEKI
Sbjct: 704 QXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKI 738



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P  +  + II    K+ L+ +A +++++         V+ YN+L++  C +     A
Sbjct: 198 SVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEA 257

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           ++L+  M  K   PD  T+  L++A    GKM+ A+  L  M      P V   + L+ G
Sbjct: 258 FSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDG 317

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
                 +++AK +   M + G   ++ T+ ++I+ +CK   V+  + ++  +    +  D
Sbjct: 318 YFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPD 377

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY  LI  + K   ++ A  L   + E G +P    Y  ++  + + G+ ++A  FF 
Sbjct: 378 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQ 437

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            + +KG+  N   Y ++I    +   F EA +   +M   G  P +  F  +   L    
Sbjct: 438 RLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKD 497

Query: 312 KHDLAEKI 319
           ++D AEKI
Sbjct: 498 ENDKAEKI 505



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 145/342 (42%), Gaps = 31/342 (9%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL---FALCE 64
           MK  N++    T + +I+  GK G +  A  V         +  V+ YNSL+   F L +
Sbjct: 264 MKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK 323

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           VK    A  +   M + G  P+ RTY  +++  C    + EA    +EM  K   P +  
Sbjct: 324 VK---NAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVT 380

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL    +LE A  +  KM +QG   D+ ++  L++ +CK G +E   E +  + 
Sbjct: 381 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLL 440

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   +V TY ++I  + KA +  EA  L   +   G  P    +  II  +F + + D
Sbjct: 441 VKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDEND 500

Query: 245 DAFCFFSEMKIKGHPPNRP--------VYTMLITMCGR----------GGRFV-----EA 281
            A     EM  +G    R         V  ++   C +           G F+      A
Sbjct: 501 KAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHA 560

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
                 M +MG+TP  +C+ ++ DGL  C K  + E + L E
Sbjct: 561 KYVFYSMAQMGVTPNVQCYTIMIDGL--CKKKTVDEAMSLFE 600



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 135/300 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G +  A+   ++  A   Q   + Y +L+  LC+         L+R++
Sbjct: 135 TLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKL 194

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD   Y  ++++ C +  + +A +   EM  KG +P V   + LV G    G+L
Sbjct: 195 EGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHL 254

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++N+M  +    D+ TFN+LI+ + K G+++    +   + K  +  DV TY  L
Sbjct: 255 KEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSL 314

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +  A  + +++ + G  P    Y  +I G+ +    D+A   F EMK K  
Sbjct: 315 IDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM 374

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT LI    +      A     +M E G+ P    + ++ D L   G+ + A++
Sbjct: 375 IPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKE 434



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 116/252 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N +L +L   K +    +L ++    G  PD  T  IL+N +C    +  A   L  + 
Sbjct: 66  FNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSVLANIL 125

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G++P     + L++GL   G ++ A    ++++ QGF L+  ++ +LI  +CK+GE +
Sbjct: 126 KRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETK 185

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +    +  DV  Y  +I ++ K  ++ +A  L   ++  G  P    Y  ++
Sbjct: 186 AVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALV 245

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G    G   +AF   +EMK+K   P+   +  LI   G+ G+   A   L  M +  + 
Sbjct: 246 YGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIK 305

Query: 295 PISRCFDLVTDG 306
           P    ++ + DG
Sbjct: 306 PDVVTYNSLIDG 317



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 90/173 (52%), Gaps = 3/173 (1%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           QC   Y  ++  LC+ K    A +L   M  K   P+  TY  L++A C +  +  A   
Sbjct: 577 QC---YTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIAL 633

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L+EM + G  P V    +L+ GL  +G LE AK++  +++ +G+ L+++ + ++I  +CK
Sbjct: 634 LKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCK 693

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +G  +  +++   +   G   D  T+ I+I A+ +    D+A ++L  ++  G
Sbjct: 694 AGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARG 746



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 6/209 (2%)

Query: 52  VLLYNSLL---FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           V+ Y +L+   F + E+K  H  Y +   M + G  P+ + Y I+++  C    + EA  
Sbjct: 541 VVTYGTLMDGYFLVNELK--HAKY-VFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMS 597

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             +EM  K   P +     L+  L    +LE A  ++ +M + G   D+ ++  L++ +C
Sbjct: 598 LFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLC 657

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           KSG +E   E++  +   G   +V  Y  +I  + KAG+ DEA  L   + + G  P   
Sbjct: 658 KSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAV 717

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +  II  +F + + D A     EM  +G
Sbjct: 718 TFDIIIWALFEKDENDKAEKILXEMIARG 746



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  N+  +  T + +I+   K+  ++ A+ +  +      Q  V  Y  LL  LC+ 
Sbjct: 600 EEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKS 659

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               GA  + +R++ KG+  + + Y  ++N  C +G   EA +   +M DKG  P     
Sbjct: 660 GRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTF 719

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           D+++  L      + A++++ +MI +G +
Sbjct: 720 DIIIWALFEKDENDKAEKILXEMIARGLM 748


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 132/277 (47%), Gaps = 4/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +IE F + G +D AVE+F +      Q  + +Y +L+  LC+         ++RRM
Sbjct: 83  SYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRGEEGLLMLRRM 138

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G+ P  R YA +V+  C   K +EA+E LQEM +KG  P V     ++      G +
Sbjct: 139 KELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 198

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++  M  +G   ++ T+N+L++  C  G+V   + +   +   G+  D  TY +L
Sbjct: 199 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLL 258

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G I+ AFRLL  +  DG       Y  +I  + + G+ D A   F  ++ +G 
Sbjct: 259 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 318

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   +  LI    + G+   A  +L +M   G TP
Sbjct: 319 KPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTP 355



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 132/311 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G + +A+ V        C+  V  YN+L+   C     H A AL+ +M
Sbjct: 184 TCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKM 243

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY +L+   C  G +  A   L+ M   G        + L+  L   G  
Sbjct: 244 RVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRT 303

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + +  +G   +  TFNSLI  +CKSG+V+   +    +   G   D  TY   
Sbjct: 304 DQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSF 363

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K     E    +  +++   KP    Y  +I  + +   +      + EM   G 
Sbjct: 364 IEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGC 423

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT  +      GR  EA N L+EM++ G+T  +  ++ + DG  + G+ D A  
Sbjct: 424 NPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVS 483

Query: 319 IELLEVSLRSV 329
           I     S+ SV
Sbjct: 484 ILKQMTSVASV 494



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 128/300 (42%), Gaps = 4/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + +   VD A ++F+K       Q V+ Y +L+   CE      A  L   M
Sbjct: 48  TFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEM 107

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD   YA LV   C +G+  E    L+ M + G+ P  R    +V         
Sbjct: 108 DQ----PDMHMYAALVKGLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKA 163

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++M+ +M ++G    + T  ++I   CK G +   + +   +   G   +V TY  L
Sbjct: 164 KEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNAL 223

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + +A  LL+ +   G  P    Y  +I+G    G  + AF     M+  G 
Sbjct: 224 VQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGL 283

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             ++  Y  LI    + GR  +A +    +   G+ P +  F+ + +GL   GK D+A K
Sbjct: 284 IADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWK 343



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 4/252 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+++ +LC       A   +  M+R G+ PD  T+  L+  +C + ++  A++   +M 
Sbjct: 14  YNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMP 73

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +GF   V     L++G    G ++ A ++  +M +     D+  + +L++ +CK+G  E
Sbjct: 74  LRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQP----DMHMYAALVKGLCKAGRGE 129

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + M   + +LG       Y  ++          EA  +L  + E G  P       +I
Sbjct: 130 EGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVI 189

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               + G+  DA      MK++G  PN   Y  L+      G+  +A   L +M   G+ 
Sbjct: 190 NAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVN 249

Query: 295 PISRCFDLVTDG 306
           P +  ++L+  G
Sbjct: 250 PDAVTYNLLIRG 261



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 142/370 (38%), Gaps = 52/370 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L     T + +I    K G  D A  +F+       +   + +NSL+  
Sbjct: 272 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 331

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+  + +M+  G  PD  TY+  +   C     +E   F+ EM  K   P 
Sbjct: 332 LCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 391

Query: 122 VRGRDLLVQGLLN-----------------------------------AGYLESAKQMVN 146
                +++  LL                                     G L  A+ ++ 
Sbjct: 392 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 451

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI------- 199
           +M K G  +D   +N+L++     G+ +  V +   +  +    +  TY IL+       
Sbjct: 452 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 511

Query: 200 ---------PA-VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                    PA V KA  + + F L   + ++   P    Y+ I++G    G+ ++A   
Sbjct: 512 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSL 571

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            S MK      N  +YT L+T   +  R+++A   +  M + G  P    +  +  GL  
Sbjct: 572 VSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLIC 631

Query: 310 CGKHDLAEKI 319
            G+ D A++I
Sbjct: 632 EGQTDKAKEI 641



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 4/224 (1%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  ++ + C    +  A  +L  M   G+ P     + L+ G      ++ A+ + +KM
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +GF  D+ ++ +LIE  C++G ++  VE++  + +     D+  Y  L+  + KAG  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGLCKAGRG 128

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +E   +L  + E G +P    YA ++       +  +A     EM  KG  P     T +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I    + GR  +A   L  M   G  P    ++ +  G  N GK
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGK 232



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 1   MWKTIEL---------MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WK IEL         MK      +  T S I+E F + G  + A  + +     +    
Sbjct: 524 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 583

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +Y +L+   C+ K +  A+ L+  MI+ GF+P   +Y  L++     G+  +A+E   
Sbjct: 584 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFM 643

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
               K ++P      +++ GL+  G+ + +++M+
Sbjct: 644 NSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMI 677



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+S+L    E      A +L+  M       ++  Y  LV  +C S +  +A   +  M 
Sbjct: 552 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 611

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P +     L+ GL+  G  + AK++      + +  D   +  +I+ + K G  +
Sbjct: 612 QHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 671

Query: 175 FCVEMYYSVCKLGLCADVSTYKIL 198
              EM   + ++       TY +L
Sbjct: 672 ISREMIIMLERMNCRPSHQTYAML 695


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +           +     +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVGLK 384



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 121/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 226 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 20/295 (6%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI-RKG-------FV----------PDKR 88
           N +  +  Y +++  LC  ++   A +LI+ ++ RKG       F            D  
Sbjct: 14  NFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETRGTQRSDIY 73

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            ++ L+ A+  SG +R+A E  +   +  F  P+     +++ L+   Y +       ++
Sbjct: 74  VFSGLITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEI 133

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G +
Sbjct: 134 LECGYPASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDL 193

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T L
Sbjct: 194 DEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTL 253

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           I    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 254 IDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 306



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 154/345 (44%), Gaps = 43/345 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +IE F + G VD A+E+F +      Q  +  + +L+  LC+ +       ++++M
Sbjct: 201 SYAALIEGFCETGRVDEALELFRELE----QPDMYTHAALVKGLCDARRGEEGLYMLQKM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----------------------- 115
              G+ P  R YA LV+ WC   K  EA++ L EM D                       
Sbjct: 257 KELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRM 316

Query: 116 ------------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                       KG  P V   + +VQG  N G +  A  ++++M + G   D+ T+N L
Sbjct: 317 SGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLL 376

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C  G +E    +   +   GL AD  TY +LI A+ K G +DEA  L   L   G 
Sbjct: 377 IRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGI 436

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMC-GRGGRFVEA 281
           +P    +  +I G+ + G+FD A  F  +M   G  P+   Y+  I  +C  +G R  E 
Sbjct: 437 RPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSR--EG 494

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            +++ EM +  + P +  + +V D L     + LA +I    VSL
Sbjct: 495 LSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSL 539



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 128/301 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + + G +  AV VF       C+  V  YN+++   C V   + A AL+ +M
Sbjct: 302 TCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY +L+   C  G +  A   L+ M   G        ++L+  L   G +
Sbjct: 362 RECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKV 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + +  +G   +  TFN++I  +CK G+ +        +   G   D  TY   
Sbjct: 422 DEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPF 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K     E    +  +++   KP    Y  +I  +F+   +  A   + +M   G 
Sbjct: 482 IENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGC 541

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT  +      GR  EA N ++EM + G+   +  ++ + DG  + GK D A  
Sbjct: 542 SPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVT 601

Query: 319 I 319
           I
Sbjct: 602 I 602



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 131/298 (43%), Gaps = 4/298 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + +   +D A ++F+K       Q  + Y +L+   CE      A  L R +
Sbjct: 166 TFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFREL 225

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD  T+A LV   C + +  E    LQ+M + G+ P  R    LV         
Sbjct: 226 EQ----PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKA 281

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A++M+N+M   G V    T  +++   C+ G +   V ++ S+   G   +V TY  +
Sbjct: 282 EEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAM 341

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G + +A  LL  + E G +P    Y  +I+G    G  + AF     M+  G 
Sbjct: 342 VQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGL 401

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++  Y +LI    + G+  EA +    +   G+ P S  F+ V +GL   GK D+A
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVA 459



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 114/252 (45%), Gaps = 4/252 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+ ALC       A   +  M+R G+ PD  T+  L+  +C + ++  AQ+   +M 
Sbjct: 132 YNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMP 191

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +GF+        L++G    G ++ A ++  ++ +     D+ T  +L++ +C +   E
Sbjct: 192 LRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQP----DMYTHAALVKGLCDARRGE 247

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + M   + +LG       Y  L+    +    +EA ++L+ + ++G  P       ++
Sbjct: 248 EGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVV 307

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               R G+   A   F  MK+KG  PN   Y  ++      G+  +A   L +M E G+ 
Sbjct: 308 NAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVE 367

Query: 295 PISRCFDLVTDG 306
           P    ++L+  G
Sbjct: 368 PDVVTYNLLIRG 379



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 4/229 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            P   TY  L+ A C    +R AQ +L  M   G+ P     + L+ G      L+ A+ 
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQD 185

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + +KM  +GF  D  ++ +LIE  C++G V+  +E++  + +     D+ T+  L+  + 
Sbjct: 186 LFDKMPLRGFSQDAVSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLC 241

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            A   +E   +L  + E G +P    YA ++    R  + ++A    +EM   G  P   
Sbjct: 242 DARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAV 301

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             T ++    R GR   A      M   G  P    ++ +  G  N GK
Sbjct: 302 TCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGK 350



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/409 (18%), Positives = 142/409 (34%), Gaps = 87/409 (21%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L+    T +++I+   K G VD A  +F+       +   + +N+++  
Sbjct: 390 FRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK----- 116
           LC+   F  A   + +M+  G  PD  TY+  +   C +   RE   F+ EM  K     
Sbjct: 450 LCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGLSFIDEMLQKDVKPS 509

Query: 117 ------------------------------GFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                                         G +P V      V+   N G L  A+ +V 
Sbjct: 510 TVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSVRAYCNEGRLHEAENVVM 569

Query: 147 KMIKQGFVLDLETFNSLIE----------------------------------------- 165
           +M K G ++D   +N+LI+                                         
Sbjct: 570 EMKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRR 629

Query: 166 ----------TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
                     ++ K+ E+    E++  + K  + +    Y  ++   S+   +DE   L+
Sbjct: 630 LAEDVPLKTTSVWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLV 689

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            ++ ED       +Y  ++    +   + DA+     M   G  PN   Y  L++     
Sbjct: 690 SHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAE 749

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA-EKIELLE 323
           G+   A      +           + ++ DGL   G  D+  + I +LE
Sbjct: 750 GQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILE 798



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 1   MWKTIEL---------MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WKTIEL         MK  ++  S +    I+E F +   +D    + +     +    
Sbjct: 641 VWKTIELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLN 700

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +Y SL+   C+++++  A+AL+  MI  GF+P+  +Y  L++ + + G+   A+E  +
Sbjct: 701 EDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFR 760

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            +  K +N       +++ GL+  G+ +    M++ + +       ET+  L E +
Sbjct: 761 GLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEEL 816



 Score = 37.7 bits (86), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/149 (20%), Positives = 59/149 (39%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y ++L    E +      +L+  M       ++  Y  LVN +C      +A   L  M 
Sbjct: 669 YLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCKLRMYPDAWALLCSMI 728

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P +     L+ G    G  + AK++   +  + +  D   +  +I+ + + G  +
Sbjct: 729 GHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPD 788

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVS 203
            C +M   + ++       TY +L   +S
Sbjct: 789 MCHDMISILEQMKCKPSDETYAMLTEELS 817


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 122/265 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNS++   C++ +   A  ++R    KGFVPD+ TY  L+N  C  G +  A     E  
Sbjct: 323 YNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAM 382

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KG  P +   + LV+GL   G +  A +++N+M + G   D+ T+N +I  +CK G V 
Sbjct: 383 EKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVS 442

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +       G   DV T+  LI    K   +D A  ++  +   G  P    Y  I+
Sbjct: 443 DADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSIL 502

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G+++D    F  M  KG  PN   Y +L     +  +  EA N + EM   GLT
Sbjct: 503 NGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLT 562

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    F  +  G  + G  D A ++
Sbjct: 563 PDVVNFGTLMKGFCDNGDLDGAYQL 587



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 133/307 (43%), Gaps = 36/307 (11%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           +  +G+ G +  AV+VF +   FNC+  V  YN+++  L E + F  A+ +  RM  KG 
Sbjct: 83  MRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGI 142

Query: 84  VPDKRTYAILVNAWCSSGKMR-----------------------------------EAQE 108
           VPD  T+ I + ++C + +                                     EA E
Sbjct: 143 VPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHE 202

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             +EM   G  P +   + L+  L   G+++ +++++NK++K+G   +L T N  I+  C
Sbjct: 203 LFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFC 262

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           +   +   + +   V + GL  DV TY  LI  + K   + EA   L  +V +G++P   
Sbjct: 263 QRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGF 321

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  II G  + G   +A     +   KG  P+   Y  LI    + G    A N   E 
Sbjct: 322 TYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEA 381

Query: 289 TEMGLTP 295
            E GL P
Sbjct: 382 MEKGLKP 388



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 143/304 (47%), Gaps = 3/304 (0%)

Query: 13  LSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L + P  ++   +I    + G V  +  + NK         +   N  +   C+  + + 
Sbjct: 210 LGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNE 269

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  + R G  PD  TY  L+   C + K+ EA+ +L++M ++G+ P     + ++ 
Sbjct: 270 AIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIID 328

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G +++A Q++     +GFV D  T+ SLI  +C+ G+++  + ++    + GL  
Sbjct: 329 GYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKP 388

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++     L+  +S+ G+I +A +L++ + E+G  P    Y  +I G+ + G   DA    
Sbjct: 389 NLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLV 448

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +   KGH P+   +  LI    +  +   A   +  M   G++P    ++ + +GL   
Sbjct: 449 IDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKA 508

Query: 311 GKHD 314
           GK++
Sbjct: 509 GKYE 512



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 135/296 (45%), Gaps = 3/296 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T   +I    + G +D A+ VFN+      +  ++L N+L+  L +  L   A  L+  
Sbjct: 356 STYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNE 415

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY +++N  C  G + +A   + +   KG  P V   + L+ G      
Sbjct: 416 MSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLK 475

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L++A ++V++M   G   D+ T+NS++  +CK+G+ E  +  +  + + G   ++ TY I
Sbjct: 476 LDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNI 535

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L  +  KA  ++EA  L+  +   G  P    +  ++KG    G  D A+  F  +  + 
Sbjct: 536 LTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVD-EQ 594

Query: 258 HPPNRPVYTMLITMCGRGGRF--VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +  +  + T  I +    G+     A     +M E G +P S  + ++ DG    G
Sbjct: 595 YKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTG 650



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 1/243 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + K   +DNA+E+ ++         V+ YNS+L  LC+   +       + M
Sbjct: 462 TFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLM 521

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG VP+  TY IL  ++C + K+ EA   ++EM +KG  P V     L++G  + G L
Sbjct: 522 MEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDL 581

Query: 139 ESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + A Q+  ++ +Q  F   + T+N +I        +    +++  +C+ G   D  TY++
Sbjct: 582 DGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRV 641

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K G I+  +  L   +E G  P  + +  ++  +  + +  +A      M  KG
Sbjct: 642 MIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKG 701

Query: 258 HPP 260
             P
Sbjct: 702 IVP 704



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 130/311 (41%), Gaps = 36/311 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +++   + GL+  A+++ N+ +   C   +  YN ++  LC++     A  L+   I 
Sbjct: 394 NTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIA 453

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG +PD  T+  L++ +C   K+  A E +  M + G +P V   + ++ GL  AG  E 
Sbjct: 454 KGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYED 513

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV-------- 192
                  M+++G V ++ T+N L E+ CK+ +VE  + +   +   GL  DV        
Sbjct: 514 VMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMK 573

Query: 193 ----------------------------STYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
                                       +TY I+I A +    ++ A +L + + E+G  
Sbjct: 574 GFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFS 633

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I G  + G  +  + F      KG  P+   +  ++       R  EA   
Sbjct: 634 PDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGI 693

Query: 285 LVEMTEMGLTP 295
           +  M   G+ P
Sbjct: 694 IHLMVHKGIVP 704



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 96/218 (44%), Gaps = 3/218 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           +N  VSP   T + I+    K G  ++ +  F       C   ++ YN L  + C+ +  
Sbjct: 487 WNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKV 546

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDL 127
             A  LI  M  KG  PD   +  L+  +C +G +  A +  + + ++  F+  +   ++
Sbjct: 547 EEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNI 606

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++        +  A+++ NKM + GF  D  T+  +I+  CK+G +           + G
Sbjct: 607 MINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKG 666

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           L   ++T+  ++  +     + EA  ++H +V  G  P
Sbjct: 667 LIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVP 704



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 95/217 (43%), Gaps = 14/217 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++ E F K   V+ A+ +  +         V+ + +L+   C+     GAY L +R+
Sbjct: 532 TYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRV 591

Query: 79  IRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
             +  F     TY I++NA+     M  A++   +M + GF+P      +++ G    G 
Sbjct: 592 DEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGN 651

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-------- 189
           + S    +   I++G +  L TF  ++  +C    V   V + + +   G+         
Sbjct: 652 INSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVVNTIF 711

Query: 190 ----ADVSTYKILIPAVSKAGMIDE-AFRLLHNLVED 221
                +V+  KI++  + K G I   A+ +LH+ + D
Sbjct: 712 EADKKEVAAPKIVVENLMKKGHITYFAYEILHDGIRD 748


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM  A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 120/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               GA  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 SKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM   GH P+   Y +L+
Sbjct: 406 GSKLLKEMHRDGHAPSVVTYNVLM 429



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVGLK 384



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431


>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
 gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
          Length = 653

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 132/299 (44%), Gaps = 14/299 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   I+      G VD A EV +             YN+++ ALC        +A++  M
Sbjct: 206 TYGTIVSALCTLGRVDEATEVLSAAPPVAAS-----YNAVILALCREFRMQEVFAVVGDM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY  +VNA+C +G++R A   L  M   G  P V     LV GL N G +
Sbjct: 261 VGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFNDGRV 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M   M+ +G+     ++N LI  +C  G+++    +   + + G   +  TY  L
Sbjct: 321 HDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTL 380

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SKAG +D A  + +++   G KP   +Y  ++    ++  F+ A     +M ++  
Sbjct: 381 IDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENC 440

Query: 259 PPNRPVYTMLITM---CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL---KNCG 311
           PPN   +  LI     C R GR   A     EM   G  P  R ++ +  GL    NCG
Sbjct: 441 PPNTVTFNTLIRSLCNCRRVGR---ALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCG 496



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 30/326 (9%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            +P+  + +I+   +  +V     V         Q  V  YN L+ ALC+      A  +
Sbjct: 132 TAPRLYNHLIDALLRENMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKM 191

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ----------------------- 111
           +  M  KG  PD  TY  +V+A C+ G++ EA E L                        
Sbjct: 192 LDEMATKGCPPDDVTYGTIVSALCTLGRVDEATEVLSAAPPVAASYNAVILALCREFRMQ 251

Query: 112 -------EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
                  +M  +G  P V     +V     AG L  A  ++ +M+  G   ++ TF +L+
Sbjct: 252 EVFAVVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALV 311

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +   G V   ++M+  +   G      +Y +LI  +   G +  A  +L+++ + G  
Sbjct: 312 GGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCF 371

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y+ +I G  + G  D A   +++M   G  PN  VYT ++ +  +   F +A + 
Sbjct: 372 PNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESL 431

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNC 310
           + +M      P +  F+ +   L NC
Sbjct: 432 IDKMLVENCPPNTVTFNTLIRSLCNC 457



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVL--LYNSLLFA 61
           ++ M+   +  +   L   +  F + G  D A++ F +      C +     LYN L+ A
Sbjct: 84  LQEMRLRGVPCTEGALVAAVGAFARAGAPDRALKTFYRAVHDLGCARPTAPRLYNHLIDA 143

Query: 62  LCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           L    +  GA AL+   +RK G  P+  TY +LV A C + ++  A++ L EM+ KG  P
Sbjct: 144 LLRENMV-GAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCPP 202

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  +V  L   G ++ A ++++            ++N++I  +C+   ++    + 
Sbjct: 203 DDVTYGTIVSALCTLGRVDEATEVLSAAPPVA-----ASYNAVILALCREFRMQEVFAVV 257

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  +V TY  ++ A  KAG +  A  +L  +V  G  P  + +  ++ G+F  
Sbjct: 258 GDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLFND 317

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   +  M  +G  P+   Y +LI      G    A++ L +M + G  P +R +
Sbjct: 318 GRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTY 377

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             + DG    G  D A  I
Sbjct: 378 STLIDGFSKAGDLDGAISI 396



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 129/267 (48%), Gaps = 10/267 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +    + +T S +I+ F K G +D A+ ++N  T   C+  V++Y +++   C+  +
Sbjct: 365 MEQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLM 424

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F+ A +LI +M+ +   P+  T+  L+ + C+  ++  A     EM   G  P  R  + 
Sbjct: 425 FNQAESLIDKMLVENCPPNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNE 484

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL- 186
           L+ GL   G    A QMV +M   G  L L T+N+++  +C   ++    E  + V ++ 
Sbjct: 485 LLHGLFREGNCGDALQMVIEMQNHGIELSLVTYNTVVSGLC---QMRMGREAMFFVGRMI 541

Query: 187 --GLCADVSTYKILIPAVSKAGMIDEAFRLLH--NLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             G+  D  T+  +I A  K G +  A  +L   N+V  G      +Y  ++  +  + +
Sbjct: 542 VRGIQPDAFTFTAIIHAYCKEGEVRMAAWILGAMNVVNCGRNIL--VYTILMAELCNQDK 599

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +DA  +  +M  +G  PN   + +L+
Sbjct: 600 LEDAMVYLLKMLYEGIYPNTVTWNVLV 626



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/329 (19%), Positives = 137/329 (41%), Gaps = 4/329 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWK    M     + S  + +++I      G +  A  V N      C      Y++L+ 
Sbjct: 326 MWKC---MVAEGWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLID 382

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              +     GA ++   M R G  P+   Y  +V  +C      +A+  + +M  +   P
Sbjct: 383 GFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMFNQAESLIDKMLVENCPP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L++ L N   +  A  + ++M + G   +  T+N L+  + + G     ++M 
Sbjct: 443 NTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQMV 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G+   + TY  ++  + +  M  EA   +  ++  G +P    +  II    + 
Sbjct: 503 IEMQNHGIELSLVTYNTVVSGLCQMRMGREAMFFVGRMIVRGIQPDAFTFTAIIHAYCKE 562

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+   A      M +     N  VYT+L+       +  +A  YL++M   G+ P +  +
Sbjct: 563 GEVRMAAWILGAMNVVNCGRNILVYTILMAELCNQDKLEDAMVYLLKMLYEGIYPNTVTW 622

Query: 301 DLVTDGL-KNCGKHDLAEKIELLEVSLRS 328
           +++  G+ +N G ++ ++ I+ + + + +
Sbjct: 623 NVLVRGVFRNLGCNNPSDFIQHIAMDISA 651


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 128/296 (43%), Gaps = 2/296 (0%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L   P  +S   II  +   G ++ A  + +       +     Y SL+  +C+      
Sbjct: 202 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 261

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L  +M+  G VP+  TY  L++ +C+ G +  A  +  EM  KG  P V   +LLV 
Sbjct: 262 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 321

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G +  A  M+ +M K+G + D  T+N LI    + G  +   +++  +   G+  
Sbjct: 322 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEP 381

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY  LI  +S+   + EA  L   +++ G  P   ++  +I G    G  + AF   
Sbjct: 382 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLL 441

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  K  PP+   +  L+    R G+  EA   L EM   G+ P    ++ +  G
Sbjct: 442 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISG 497



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 142/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   +     T   +I    K G ++ A  +F+K          + YN+L+   
Sbjct: 229 RILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 288

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A++    M++KG +P   TY +LV+A    G+M EA + ++EM  KG  P  
Sbjct: 289 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 348

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ G    G  + A  + N+M+ +G      T+ SLI  + +   ++   +++  
Sbjct: 349 ITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 408

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  DV  +  +I      G ++ AF LL  +      P    +  +++G  R G+
Sbjct: 409 ILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 468

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     EMK +G  P+   Y  LI+  GR G   +A     EM  +G  P    ++ 
Sbjct: 469 VEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNA 528

Query: 303 VTDGLKNCGKHDLAEKI 319
           +   L    + DLAE++
Sbjct: 529 LIKCLCKNQEGDLAEEL 545



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 1/278 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+++          GA  ++  M  KG  PD  TY  L++  C  G++ EA     
Sbjct: 208 VVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFD 267

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M + G  P     + L+ G  N G LE A    ++M+K+G +  + T+N L+  +   G
Sbjct: 268 KMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEG 327

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +    +M   + K G+  D  TY ILI   S+ G    AF L + ++  G +P    Y 
Sbjct: 328 RMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYT 387

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + RR +  +A   F ++  +G  P+  ++  +I      G    A   L EM   
Sbjct: 388 SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRK 447

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            + P    F+ +  G    GK + A ++ L E+  R +
Sbjct: 448 SVPPDEVTFNTLMQGRCREGKVEEA-RMLLDEMKXRGI 484



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%)

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           GK+++A+EF+  M   GF P V   + ++ G  + G +E A+++++ M  +G   D  T+
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            SLI  +CK G +E    ++  + ++GL  +  TY  LI      G ++ AF     +V+
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P  S Y  ++  +F  G+  +A     EM+ KG  P+   Y +LI    R G    
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 281 AANYLVEMTEMGLTP 295
           A +   EM   G+ P
Sbjct: 367 AFDLHNEMLSKGIEP 381



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 114/297 (38%), Gaps = 35/297 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +   G ++ A    ++         V  YN L+ AL        A  +I+ M
Sbjct: 280 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 339

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG +PD  TY IL+N +   G  + A +   EM  KG  P       L+  L     +
Sbjct: 340 RKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 399

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  K++ QG   D+  FN++I+  C +G VE    +   + +  +  D  T+  L
Sbjct: 400 KEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 459

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC---------- 248
           +    + G ++EA  LL  +   G KP    Y  +I G  RRG   DAF           
Sbjct: 460 MQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGF 519

Query: 249 -------------------------FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
                                       EM  KG  P+   Y  LI   G     VE
Sbjct: 520 NPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGNVDTLVE 576



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P  +S   +I  +G+ G + +A  V ++  +      +L YN+L+  LC+ +    A 
Sbjct: 484 IKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 543

Query: 73  ALIRRMIRKGFVPDKRTYAILV 94
            L++ M+ KG  PD  TY  L+
Sbjct: 544 ELLKEMVNKGISPDDSTYLSLI 565


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V  +T + ++    + G +D A  +  +     C    + YN+L+   C  K    A+  
Sbjct: 492 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 551

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M+++G  PD  TY+IL+    +  K+ EA +F  +    G  P V    +++ G   
Sbjct: 552 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 611

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           A   E  ++  ++M+ +    +   +N LI   C+SG +   +E+   +   G+  + +T
Sbjct: 612 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 671

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  +S    ++EA  L   +  +G +P    Y  +I G  + GQ     C   EM 
Sbjct: 672 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 731

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            K   PN+  YT++I    R G   EA+  L EM E G+ P S
Sbjct: 732 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 774



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 142/312 (45%), Gaps = 8/312 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKL 67
           N+S     L+ +I    KHG    A+E++    NK    + +      N+LL  LCE   
Sbjct: 454 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS----NALLHGLCEAGK 509

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ + + ++ +G V D+ +Y  L++  C   K+ EA  FL EM  +G  P      +
Sbjct: 510 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 569

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL N   +E A Q  +   + G + D+ T++ +I+  CK+   E   E +  +    
Sbjct: 570 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 629

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  LI A  ++G +  A  L  ++   G  P  + Y  +IKGM    + ++A 
Sbjct: 630 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 689

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM+++G  PN   YT LI   G+ G+ V+    L EM    + P    + ++  G 
Sbjct: 690 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 749

Query: 308 KNCGKHDLAEKI 319
              G    A ++
Sbjct: 750 ARDGNVTEASRL 761



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 4/304 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALC 63
           +LM    LS++  T + +I+ + K+G  DNA  +  +     FN  Q    + S++  LC
Sbjct: 378 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS--FTSVICLLC 435

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              +F  A   +  M+ +   P       L++  C  GK  +A E   +  +KGF    R
Sbjct: 436 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 495

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL  AG L+ A ++  +++ +G V+D  ++N+LI   C   +++        +
Sbjct: 496 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 555

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K GL  D  TY ILI  +     ++EA +   +   +G  P    Y+ +I G  +  + 
Sbjct: 556 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 615

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++   FF EM  K   PN  VY  LI    R GR   A     +M   G++P S  +  +
Sbjct: 616 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 675

Query: 304 TDGL 307
             G+
Sbjct: 676 IKGM 679



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 37/335 (11%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     +  I  F K G V+ AV++F+K         V+ +N+++  L     +  A+
Sbjct: 245 VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAF 304

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M+ +G  P   TY+ILV     + ++ +A   L+EM+ KGF P V   + L+   
Sbjct: 305 MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSF 364

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           + AG L  A ++ + M+ +G  L   T+N+LI+  CK+G+ +    +   +  +G   + 
Sbjct: 365 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 424

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR------------ 240
            ++  +I  +    M D A R +  ++     P   L   +I G+ +             
Sbjct: 425 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ 484

Query: 241 -----------------------GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
                                  G+ D+AF    E+  +G   +R  Y  LI+ C    +
Sbjct: 485 FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKK 544

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             EA  +L EM + GL P +  + ++  GL N  K
Sbjct: 545 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 579



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + +I+  G  G  D A     K      +  ++ Y+ L+  L   K    AY
Sbjct: 280 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 339

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +++ M +KGF P+   Y  L++++  +G + +A E    M  KG +      + L++G 
Sbjct: 340 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 399

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNS------------------------------ 162
              G  ++A++++ +M+  GF ++  +F S                              
Sbjct: 400 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 459

Query: 163 -----LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
                LI  +CK G+    +E+++     G   D  T   L+  + +AG +DEAFR+   
Sbjct: 460 GLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKE 519

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++  G       Y  +I G   + + D+AF F  EM  +G  P+   Y++LI       +
Sbjct: 520 ILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 579

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             EA  +  +    G+ P    + ++ DG
Sbjct: 580 VEEAIQFWDDCKRNGMLPDVYTYSVMIDG 608



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L+ + + A C+      A  L  +M   G  P+  T+  +++     G+  EA  F +
Sbjct: 249 VYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKE 308

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M ++G  P +    +LV+GL  A  +  A  ++ +M K+GF  ++  +N+LI++  ++G
Sbjct: 309 KMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAG 368

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   +E+   +   GL    STY  LI    K G  D A RLL  ++  G       + 
Sbjct: 369 SLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFT 428

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  +     FD A  F  EM ++   P   + T LI+   + G+  +A     +    
Sbjct: 429 SVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNK 488

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           G    +R  + +  GL   GK D A +I+
Sbjct: 489 GFVVDTRTSNALLHGLCEAGKLDEAFRIQ 517



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 6/243 (2%)

Query: 87  KRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           ++   +L+  +C+  K      A +    +++KG  P     ++L+  L+ A   +   +
Sbjct: 177 RKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCE 236

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
             + ++ +G   D+  F + I   CK G+VE  V+++  + + G+  +V T+  +I  + 
Sbjct: 237 AFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 295

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             G  DEAF     +VE G +P    Y+ ++KG+ R  +  DA+    EM  KG PPN  
Sbjct: 296 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 355

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--EL 321
           VY  LI      G   +A      M   GL+  S  ++ +  G    G+ D AE++  E+
Sbjct: 356 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 415

Query: 322 LEV 324
           L +
Sbjct: 416 LSI 418



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 137/319 (42%), Gaps = 27/319 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-------LYNSLLF---ALCEVKLF 68
           +LSL  +E  +  + D  +EV+  CT F    C L       L N  +F     C + L 
Sbjct: 166 SLSLCFDEEIRRKMSDLLIEVY--CTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILL- 222

Query: 69  HGAYALIR-----------RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
               +L+R            ++ KG  PD   +   +NA+C  GK+ EA +   +M + G
Sbjct: 223 ---TSLVRANEFQKCCEAFDVVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAG 279

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + ++ GL   G  + A     KM+++G    L T++ L++ + ++  +    
Sbjct: 280 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 339

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   + K G   +V  Y  LI +  +AG +++A  +   +V  G     S Y  +IKG 
Sbjct: 340 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 399

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + GQ D+A     EM   G   N+  +T +I +      F  A  ++ EM    ++P  
Sbjct: 400 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 459

Query: 298 RCFDLVTDGLKNCGKHDLA 316
                +  GL   GKH  A
Sbjct: 460 GLLTTLISGLCKHGKHSKA 478



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T N L+ ++ ++ E + C E +  VCK G+  DV  +   I A  K G ++EA +L   +
Sbjct: 217 TCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 275

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G  P    +  +I G+   G++D+AF F  +M  +G  P    Y++L+    R  R 
Sbjct: 276 EEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRI 335

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            +A   L EMT+ G  P    ++ + D     G  + A +I+ L VS
Sbjct: 336 GDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 382



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 5/240 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I        V+ A++ ++ C        V  Y+ ++   C+ + 
Sbjct: 560 LKPDNY-----TYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 614

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                     M+ K   P+   Y  L+ A+C SG++  A E  ++M  KG +P       
Sbjct: 615 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 674

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++G+     +E AK +  +M  +G   ++  + +LI+   K G++     +   +    
Sbjct: 675 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 734

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY ++I   ++ G + EA RLL+ + E G  P    Y   I G  ++G   +AF
Sbjct: 735 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 794



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K    +   E F++  + N Q   ++YN L+ A C       A  L   M
Sbjct: 601 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 660

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+       ++ EA+   +EM  +G  P V     L+ G    G +
Sbjct: 661 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 720

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + ++ +M  +    +  T+  +I    + G V     +   + + G+  D  TYK  
Sbjct: 721 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 780

Query: 199 IPAVSKAGMIDEAFR 213
           I    K G + EAF+
Sbjct: 781 IYGYLKQGGVLEAFK 795


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G  D A   +++         V+ YNS++ ALC+ +    A  ++  M
Sbjct: 198 SYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +PD  TY  +++ +CSSG+ +EA  FL++M   G  P V    LL+  L   G  
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRC 317

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A+++ + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  D   +
Sbjct: 318 MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPDHYVF 374

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +  G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 375 SILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 434

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  P   VY  LI       ++  A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 435 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID--SHCKEGRV 492

Query: 316 AEKIELLEVSLR 327
            E  +L E+ +R
Sbjct: 493 IESEKLFELMVR 504



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 121/237 (51%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +  +M ++G  P+  TY  ++   C SG++ +A  + ++M D+G +P     + L+ 
Sbjct: 390 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 449

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL      E A++++ +M+ +G  L+   FNS+I++ CK G V    +++  + ++G+  
Sbjct: 450 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKP 509

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V TY  LI     AG +DEA +LL  +V  G KP    Y+ +I G  +  + +DA   F
Sbjct: 510 NVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLF 569

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            EM+  G  P+   Y +++    +  R   A    V +TE G       ++++  GL
Sbjct: 570 KEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 146/329 (44%), Gaps = 39/329 (11%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK---GFVPDKRTYAILVN 95
           V  + T   C   V  YN LL  LC+      A  L+  M      G  PD  +Y  ++N
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G   +A     EM D+G  P V   + ++  L  A  ++ A +++N M+K G + 
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMP 264

Query: 156 DLETFNSLIETICKSGE--------------------VEFCVEMYY-------------- 181
           D  T+NS++   C SG+                    V + + M Y              
Sbjct: 265 DCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIF 324

Query: 182 -SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P   +++ +I     +
Sbjct: 325 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQ 384

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D A   FS+M+ +G  PN   Y  +I +  + GR  +A  Y  +M + GL+P +  +
Sbjct: 385 GKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 444

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           + +  GL  C K + AE++ +LE+  R +
Sbjct: 445 NSLIHGLCTCNKWERAEEL-ILEMLDRGI 472



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 136/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K   +D A+EV N           + YNS+L   C       A   +++M
Sbjct: 233 TYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY++L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   D   F+ LI      G+V+  + ++  + + GL  +  TY  +
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAV 412

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A      ++++G  P   +Y  +I G+    +++ A     EM  +G 
Sbjct: 413 IGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGI 472

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   +  +I    + GR +E+      M  +G+ P    ++ + +G    GK D A K
Sbjct: 473 CLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK 532

Query: 319 I 319
           +
Sbjct: 533 L 533



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 128/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T SL+++   K+G    A ++F+  T    +  +  Y +LL            + L+  M
Sbjct: 303 TYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD   ++IL+ A+ + GK+ +A     +M  +G NP       ++  L  +G +
Sbjct: 363 VRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 422

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A     +MI +G       +NSLI  +C   + E   E+   +   G+C +   +  +
Sbjct: 423 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 482

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +  K G + E+ +L   +V  G KP    Y  +I G    G+ D+A    S M   G 
Sbjct: 483 IDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGL 542

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   Y+ LI    +  R  +A     EM   G++P    ++++  GL
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 124/268 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F        +  V+ YN+L+   C       A  L+  M+  G
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG 541

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 542 LKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  ++ + G  ++L T+N ++  +CK+   +  ++M+ ++C + L  +  T+ I+I A+
Sbjct: 602 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDAL 661

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L      +G  P    Y  + + +  +G  ++    F  M+  G   + 
Sbjct: 662 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 721

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 722 GMLNFIVRELLQRGEITRAGTYLSMIDE 749



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 121/269 (44%), Gaps = 4/269 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM   G +P+  +Y IL+   C   + +EA E L
Sbjct: 122 AIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELL 181

Query: 111 QEMSDK--GFNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             M+D   G +PP V     ++ G    G  + A    ++M+ +G + D+ T+NS+I  +
Sbjct: 182 HMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAAL 241

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK+  ++  +E+  ++ K G+  D  TY  ++     +G   EA   L  +  DG +P  
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDV 301

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           M   G+ P    F ++     N GK D A
Sbjct: 362 MVRNGIHPDHYVFSILICAYANQGKVDQA 390



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 144/319 (45%), Gaps = 3/319 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+ +  T   +I    K G V++A+  F +          ++YNSL+  LC    
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 456

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   +   +  ++++ C  G++ E+++  + M   G  P V   + 
Sbjct: 457 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNT 516

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A ++++ M+  G   +  T+++LI   CK   +E  + ++  +   G
Sbjct: 517 LINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    DDA 
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +  V  +  GL P    + L+ + +
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696

Query: 308 KNCGKHDLAEKIELLEVSL 326
              G   L E+++ L +S+
Sbjct: 697 IGQG---LLEELDQLFLSM 712



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 108/252 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + +NS++ + C+      +  L   M+R G  P+  TY  L+N +C +GKM EA + L 
Sbjct: 476 TIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLS 535

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P       L+ G      +E A  +  +M   G   D+ T+N +++ + ++ 
Sbjct: 536 GMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTR 595

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 E+Y  + + G   ++STY I++  + K  + D+A ++  NL     K     + 
Sbjct: 596 RTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFN 655

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + + G+ D+A   F      G  PN   Y ++       G   E     + M + 
Sbjct: 656 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 715

Query: 292 GLTPISRCFDLV 303
           G T  S   + +
Sbjct: 716 GCTVDSGMLNFI 727



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 135/312 (43%), Gaps = 46/312 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMR----------- 104
           AL +V     A A+ R  RM R G     PD  TY IL+   C +G++            
Sbjct: 56  ALADVARDSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIK 115

Query: 105 -----EAQEF--------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                +A  F                    L+ M++ G  P V   ++L++GL +    +
Sbjct: 116 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQ 175

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A ++++ M      G   D+ ++ ++I    K G+ +     Y+ +   G+  DV TY 
Sbjct: 176 EALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYN 235

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I A+ KA  +D+A  +L+ +V++G  P    Y  I+ G    GQ  +A  F  +M+  
Sbjct: 236 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD 295

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P+   Y++L+    + GR +EA      MT+ GL P    +  +  G    G   L 
Sbjct: 296 GVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGA--LV 353

Query: 317 EKIELLEVSLRS 328
           E   LL++ +R+
Sbjct: 354 EMHGLLDLMVRN 365



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 8/185 (4%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  D+ TY
Sbjct: 32  EDARHVFDELLRRGRGASIYGLNRALADVARDSPAA-AVSRYNRMARAGADEVTPDLCTY 90

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI    +AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE---MGLTPISRCFDLVTDGLKNCG 311
             G  PN   Y +L+       R  EA   L  M +    G  P    +  V +G    G
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEG 210

Query: 312 KHDLA 316
             D A
Sbjct: 211 DSDKA 215


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 136/281 (48%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  A E++    +  C      Y+ L+  LC++     A  L+R M  KGF P   TY
Sbjct: 322 GKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTY 381

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            IL++++C +G     +  L+ MSDKG +  + G + ++  +     ++ A + + +M  
Sbjct: 382 TILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKS 441

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           QG+  D+ T+N++I  +C + ++E    ++ ++   G+ A+  TY  LI A+ + G   +
Sbjct: 442 QGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQD 501

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L +++V  G       Y  +IK + R G  D +    SEM  KG  PN   Y +LI+
Sbjct: 502 AISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLIS 561

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              +  R  +A     EM    LTP    ++ + +GL   G
Sbjct: 562 ELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMG 602



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 4/271 (1%)

Query: 52  VLLYNSLL-FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           V+L+N+++   L + KL   A  L   M  KG  PD  TY+IL++  C  G++  A + L
Sbjct: 308 VVLFNTVIGRCLLDGKLKEAA-ELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLL 366

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           +EM DKGF P +    +L+      G  ++ + M+  M  +G  ++LE +N +I  +CK 
Sbjct: 367 REMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKD 426

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
             ++  +     +   G   D+ TY  +I  +     ++EA  L  NL+ +G       Y
Sbjct: 427 RRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITY 486

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I  + R G + DA    ++M + G   +   Y  LI    R G    +   L EM E
Sbjct: 487 NTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAE 546

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            G+ P +  ++L+   L  C    + + +EL
Sbjct: 547 KGIKPNNVSYNLLISEL--CKTRRVRDALEL 575



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 4/299 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+      + G  D A+ +        C    +LY +++ ALC     + A  L+  M
Sbjct: 174 TFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEM 233

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   D  T+  +V+  C+ G++REA   +  M  +G  P       L++GL  A  +
Sbjct: 234 FLMGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQV 293

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A+ M+ ++ +   VL    FN++I      G+++   E+Y ++   G   D  TY IL
Sbjct: 294 EEARTMLGRVPELNVVL----FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSIL 349

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +  A +LL  + + G  P    Y  ++    R G +D+       M  KG 
Sbjct: 350 IHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGL 409

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             N   Y  +I    +  R  +A  ++ EM   G  P    ++ +   L N  + + AE
Sbjct: 410 SMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAE 468



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 5/242 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEM 113
           YN++L A           +L RRM+ +  VP    T++I   A C  G+  EA   L+ M
Sbjct: 139 YNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADEALTMLRSM 198

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +  G  P       ++  L   G +  A  ++++M   G   D+ TFN ++  +C  G +
Sbjct: 199 ARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRL 258

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                +   +   G   +  TY  L+  +  A  ++EA  +L  + E        L+  +
Sbjct: 259 REAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELN----VVLFNTV 314

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I      G+  +A   +  M  KG PP+   Y++LI    + GR   A   L EM + G 
Sbjct: 315 IGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGF 374

Query: 294 TP 295
            P
Sbjct: 375 AP 376



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 89/190 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + YN+L+ AL     +  A +L   M+  G   D  +Y  L+ A C  G +  +   L 
Sbjct: 483 AITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLS 542

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM++KG  P     +LL+  L     +  A ++  +M+ Q    D+ T+N+LI  +CK G
Sbjct: 543 EMAEKGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMG 602

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   + +   +    + AD+ TY ILI    KA ++ +A  LL+  V  G  P    + 
Sbjct: 603 WMHAALNLLEKLHNEDVHADIITYNILISWHCKARLLHDASMLLNRAVTSGITPNERTWG 662

Query: 232 PIIKGMFRRG 241
            +++   R+ 
Sbjct: 663 IMVQNFVRKS 672


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 5/307 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++LMK   +S +     ++I  + + GL + A++ F +   F C+  V +YN +L AL  
Sbjct: 96  LQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLS 155

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F     +   M R G   +  TY +L+ A C + ++  A++ L EMS KG  P    
Sbjct: 156 ENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVS 215

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              +V  +   G +E A+++   M  + FV     +N+LI   C+  ++E   E++  + 
Sbjct: 216 YTTVVSSMCRLGKVEEAREL--SMRIKSFV---PVYNALINGFCREHKMEEVFELFNEMA 270

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV TY  +I  +S+ G ++ A  +L  +   G  P    +  ++KG F  G+  
Sbjct: 271 VEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLC 330

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   ++ M  +G  PN   Y  LI      G+ VEA +   +M   G+ P    +  + 
Sbjct: 331 EALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLI 390

Query: 305 DGLKNCG 311
           DG    G
Sbjct: 391 DGFAKAG 397



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 139/312 (44%), Gaps = 7/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + ++    + G V+ A E+  +  +F     V +YN+L+   C        + L   M
Sbjct: 215 SYTTVVSSMCRLGKVEEARELSMRIKSF-----VPVYNALINGFCREHKMEEVFELFNEM 269

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY+ ++N     G +  A   L +M  +G +P V     L++G    G L
Sbjct: 270 AVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRL 329

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + N+MI++G   +   +N+LI  +C  G++   V +   + + G+  + +TY  L
Sbjct: 330 CEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTL 389

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +KAG +  A  + + ++ +G  P   +Y  ++  + R   F+ A      M     
Sbjct: 390 IDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC 449

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PPN   +   I      G+   A   L +M + G  P    ++ V DGL N  +   A +
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 319 I--ELLEVSLRS 328
           I  E+ E+ ++S
Sbjct: 510 IVGEIEEMEIKS 521



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 3/253 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A E++NK     C   V++Y  ++  LC   +F+ A  LI  M
Sbjct: 385 TYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENM 444

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 P+  T+   +   C SGK   A + L +M   G  P V   + ++ GL NA   
Sbjct: 445 ANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRT 504

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+V ++ +     +L T+N+++   C +G  +  +++   +   G   D  TY  +
Sbjct: 505 REALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTV 564

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I A  K G +  A +L+  L + G + +P +  Y  ++ G+      D+A     +M  +
Sbjct: 565 IYAYCKQGEVKTAIQLVDRLTKKG-EGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINE 623

Query: 257 GHPPNRPVYTMLI 269
           G  PNR  +  L+
Sbjct: 624 GICPNRATWNALV 636



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 127/289 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F +   ++   E+FN+         V+ Y++++  L E+     A A++ +M  +G
Sbjct: 249 LINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRG 308

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T+  L+  +   G++ EA +    M  +G  P     + L+ GL + G +  A 
Sbjct: 309 CSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAV 368

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  KM + G   +  T+++LI+   K+G++    E++  +   G   +V  Y  ++  +
Sbjct: 369 SVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVL 428

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +  M + A  L+ N+      P    +   IKG+   G+ + A    ++M+  G  PN 
Sbjct: 429 CRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNV 488

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             Y  ++       R  EA   + E+ EM +      ++ +  G  + G
Sbjct: 489 TTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAG 537



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 14/311 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA------LCEVKLFHGAY 72
           T S +I    + G V+ A+ V  K     C   V  + SL+        LCE      A 
Sbjct: 280 TYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCE------AL 333

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L  RMI++G  P+   Y  L++  CS GKM EA    Q+M   G  P       L+ G 
Sbjct: 334 DLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGF 393

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG L  A ++ NKMI  G + ++  +  +++ +C++      + +  ++       + 
Sbjct: 394 AKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNT 453

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+   I  +  +G  + A ++L+ + + G  P  + Y  ++ G+F   +  +A     E
Sbjct: 454 ITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGE 513

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           ++      N   Y  +++     G F  A     ++   G  P S  ++ V      C +
Sbjct: 514 IEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAY--CKQ 571

Query: 313 HDLAEKIELLE 323
            ++   I+L++
Sbjct: 572 GEVKTAIQLVD 582



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 122/279 (43%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T + +++ +   G +  A++++N+      +   + YN+L+  LC       A +
Sbjct: 310 SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVS 369

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           + ++M R G  P++ TY+ L++ +  +G +  A E   +M   G  P V     +V  L 
Sbjct: 370 VSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLC 429

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                  A  ++  M       +  TFN+ I+ +C SG+ E+ +++   + + G   +V+
Sbjct: 430 RNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVT 489

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  ++  +  A    EA +++  + E   K     Y  I+ G    G F  A     ++
Sbjct: 490 TYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKL 549

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            + G  P+   Y  +I    + G    A   +  +T+ G
Sbjct: 550 LVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKG 588



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 116/254 (45%), Gaps = 5/254 (1%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           L Y +++  L   +   G   L++ M  +G   ++  + I++NA+  +G   +A +    
Sbjct: 74  LTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYR 133

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           + + G  P V+  + ++  LL+    +    + N M + G  L++ T+N L++ +CK+  
Sbjct: 134 IGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDR 193

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+   ++   +   G   D  +Y  ++ ++ + G ++EA  L   +     K F  +Y  
Sbjct: 194 VDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRI-----KSFVPVYNA 248

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  R  + ++ F  F+EM ++G  P+   Y+ +I      G    A   L +M   G
Sbjct: 249 LINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRG 308

Query: 293 LTPISRCFDLVTDG 306
            +P    F  +  G
Sbjct: 309 CSPNVHTFTSLMKG 322



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M+ Y  + +  T + +++          A+++  +      +  ++ YN++L   
Sbjct: 474 KVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGF 533

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-PP 121
           C   +F GA  +  +++  G  PD  TY  ++ A+C  G+++ A + +  ++ KG   P 
Sbjct: 534 CHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPD 593

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           V     L+ G+ N   ++ A   ++KMI +G   +  T+N+L+
Sbjct: 594 VFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALV 636



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 3/220 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M   N   +  T +  I+     G  + A++V N+   + C   V  YN +L  L  
Sbjct: 441 IENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFN 500

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A  ++  +       +  TY  +++ +C +G  + A +   ++   G  P    
Sbjct: 501 AKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSIT 560

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
            + ++      G +++A Q+V+++ K+G    D+ T+ SL+  +C    V+  V     +
Sbjct: 561 YNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKM 620

Query: 184 CKLGLCADVSTYKILIPAV-SKAGMIDEAFRLLHNLVEDG 222
              G+C + +T+  L+  + SK G +     ++ N++ +G
Sbjct: 621 INEGICPNRATWNALVRGLFSKLGHLG-PIHIVDNILANG 659


>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
 gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
          Length = 448

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    KH   D+A++VF+          + +Y SLL A C  +   GAY L   M
Sbjct: 151 TYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEM 210

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G+ P   TY +L+   C+ G+   A +    M  +G  P       L+ G   AG +
Sbjct: 211 IQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRI 270

Query: 139 ESAKQMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             AK +  ++++ +  +LD   +N LIE +C++ +VE  +E+   +   G    + TY  
Sbjct: 271 TEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNA 330

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    KA  +D+A +L   + E G  P   +Y+  I G+ + G+ ++A  FF +   +G
Sbjct: 331 LIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERG 390

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             P+   Y  LI       R  EA     EM E G
Sbjct: 391 CVPDNVTYNALIRGLFGANRMDEAHRLYREMGERG 425



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 120/269 (44%), Gaps = 3/269 (1%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y +L+  LC+      A  +   M+ K  VP+   Y  L+ A C + K+  A     E
Sbjct: 150 MTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVE 209

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G+ P      LL++ L N G    A  + + M  +G V D  T+ SLI   C +G 
Sbjct: 210 MIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGR 269

Query: 173 VEFCVEMYYSVCKLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           +     ++  V + G  A  D   Y +LI  + +A  ++EA  +   +V+ G  P    Y
Sbjct: 270 ITEAKVLFKEVLE-GEKALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTY 328

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G F+  + D A   F  M+ KG  PN  +Y+  I    + G+  EA  +  +  E
Sbjct: 329 NALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVE 388

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  P +  ++ +  GL    + D A ++
Sbjct: 389 RGCVPDNVTYNALIRGLFGANRMDEAHRL 417



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 117/271 (43%), Gaps = 36/271 (13%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+  L ++     A A++  M+ +G+ PD  T  +LV+ +C   ++ E  E  QE+ 
Sbjct: 13  YNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKRVGEVCELFQELE 72

Query: 115 ------------------------DKGFN-----------PPVRGRDLLVQGLLNAGYLE 139
                                   D GF            P V     ++  L+  G   
Sbjct: 73  SNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKTMLDCLIKTGKTR 132

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++V +MIK+  V D  T+ +LI  +CK    +  ++++  + +  +  ++  Y  L+
Sbjct: 133 EASEVVGEMIKKS-VPDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDVYTSLL 191

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A  +   +D A+RL   +++ G+ P  S Y  +++ +   G+   A+   S M+ +GH 
Sbjct: 192 AAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMRSRGHV 251

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           P+   Y  LI  C   GR  EA     E+ E
Sbjct: 252 PDENTYASLIYGCCMAGRITEAKVLFKEVLE 282



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%), Gaps = 4/300 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  L++++F +   V    E+F +  +      +L YN++L AL     F G +      
Sbjct: 47  TCGLLVDKFCEMKRVGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIA 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G +P    Y  +++    +GK REA E + EM  K   P       L+  L      
Sbjct: 107 VGDGSLPHVLAYKTMLDCLIKTGKTREASEVVGEMIKKSV-PDGMTYTALISVLCKHNRA 165

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ + M+++  V +L+ + SL+   C++ +++    ++  + + G     STY +L
Sbjct: 166 DDAMKVFDIMVEKEIVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLL 225

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G    A+ +  ++   GH P  + YA +I G    G+  +A   F E+ ++G 
Sbjct: 226 LRCLCNGGRSYLAYDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEV-LEGE 284

Query: 259 PP--NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +  +Y +LI    R  +  EA      M + G  P  + ++ +  G     + D A
Sbjct: 285 KALLDAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKA 344



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 4/251 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G VPD+ +Y +LV        + +A+  L  M  +G++P V    LLV        
Sbjct: 1   MLEDGVVPDRDSYNLLVRGLTKLSSVDQARAMLSTMVGEGYDPDVVTCGLLVDKFCEMKR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +    ++  ++   G  + +  +N++++ +  SG+ +   +        G    V  YK 
Sbjct: 61  VGEVCELFQELESNGVAVGMLAYNAILKALMCSGDFDGGFKFSDIAVGDGSLPHVLAYKT 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + K G   EA  ++  +++    P    Y  +I  + +  + DDA   F  M  K 
Sbjct: 121 MLDCLIKTGKTREASEVVGEMIKK-SVPDGMTYTALISVLCKHNRADDAMKVFDIMVEKE 179

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN  VYT L+    R  +   A    VEM + G  P +  + L+   L N G+  LA 
Sbjct: 180 IVPNLDVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAY 239

Query: 318 KIELLEVSLRS 328
            I     S+RS
Sbjct: 240 DI---HSSMRS 247



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 67/136 (49%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++IE   +   V+ A+EV        C   +  YN+L+    +      A  L R M  
Sbjct: 294 NVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEE 353

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KGF P+   Y+  ++  C  GK+ EA EF Q+  ++G  P     + L++GL  A  ++ 
Sbjct: 354 KGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDE 413

Query: 141 AKQMVNKMIKQGFVLD 156
           A ++  +M ++G++ D
Sbjct: 414 AHRLYREMGERGYIAD 429



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 67/140 (47%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+  LC       A  +   M+ KG +P  +TY  L+  +  + ++ +A +  + M
Sbjct: 292 IYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVM 351

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            +KGF+P        + GL   G +  A +   + +++G V D  T+N+LI  +  +  +
Sbjct: 352 EEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRM 411

Query: 174 EFCVEMYYSVCKLGLCADVS 193
           +    +Y  + + G  AD S
Sbjct: 412 DEAHRLYREMGERGYIADRS 431



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT + +I  F K   VD A+++F            ++Y++ +  LC+V   + A+   ++
Sbjct: 326 QTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQ 385

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            + +G VPD  TY  L+     + +M EA    +EM ++G+      R L  Q
Sbjct: 386 SVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREMGERGYIADRSLRTLAFQ 438


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 144/307 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    L+ +  T + +I+ F K G ++ A+ + ++      +  V+ YN+++  + + 
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKA 394

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A +L   M+  G  PD  TY +L++ +  S  M +A E L EM  +   P     
Sbjct: 395 GEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ GL ++  L+ A +++++MI+ G   ++  + +LI+   +    E  +E+   +  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D+  Y  LI  + +A  ++EA  LL ++ E G KP    Y   I    + G+   
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A  +F +M   G  PN  +YT+LI      G  VEA +    M E GL P  R +  +  
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 306 GLKNCGK 312
            L   GK
Sbjct: 635 SLSKNGK 641



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 140/323 (43%), Gaps = 8/323 (2%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  EL   MK   L+ SP T S++I        +  A EV ++      +  V +Y +
Sbjct: 432 MAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGT 491

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+ A  +   +  A  L++ MI  G +PD   Y  L+   C + K+ EA+  L +M +KG
Sbjct: 492 LIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P        +     +G ++ A++    M+  G V +   +  LI+  C  G     +
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             +  + + GL  D+  Y  +I ++SK G   EA  +    ++ G  P   LY  +I G 
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG--RGGRFVEAANYLVEMTEMGLTP 295
            + G  + A   + EM   G  PN  VY  LI   G  + G   EA     EM   G++P
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731

Query: 296 ISRCFDLVTDGLKNCGKHDLAEK 318
               + ++ DG   CGK    EK
Sbjct: 732 DGYIYCILIDG---CGKEGNLEK 751



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 121/260 (46%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  +  YN+ +  LC+      A  + + M+ KG  PD  TY +LV+ +C   + +EA+
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              + M   G NP       L+ G +  G +E A ++ ++MI +G  L++ T+N++I  I
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGI 391

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K+GE+   + ++  +   G+  D  TY +LI    K+  + +A  LL  +      P P
Sbjct: 392 AKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSP 451

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I G+        A     +M   G  PN  +Y  LI    +  R+  A   L  
Sbjct: 452 FTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 288 MTEMGLTPISRCFDLVTDGL 307
           M   G+ P   C++ +  GL
Sbjct: 512 MIANGVLPDLFCYNCLIIGL 531



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 39/342 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ + +    + A+E+     A      +  YN L+  LC  K    A  L+  M  KG
Sbjct: 492 LIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY   +N +  SG+++ A+ + ++M   G  P      +L++G  + G    A 
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                M+++G + D+  ++++I ++ K+G+ +  + ++    K G+  DV  Y  LI   
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK--GMFRRGQFDDAFCFFSEMKIKGHPP 260
            K G I++A +L   ++ +G  P   +Y  +I   G  + G   +AF  F EM  KG  P
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISP 731

Query: 261 NRPVYTMLITMCGR----------------------------------GGRFVEAANYLV 286
           +  +Y +LI  CG+                                   G+ +EA     
Sbjct: 732 DGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFD 791

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           +M +  LTP    + ++ D     GK ++ E+ E L + + +
Sbjct: 792 DMVDKKLTPNIVTYTILIDAY---GKAEMMEEAEQLFLDMET 830



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 142/317 (44%), Gaps = 7/317 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL+V      + I++F   G ++ A  VF    +      ++  N+L+  L +  +    
Sbjct: 171 NLTV----FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLF 226

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + +   M+    VPD  TY  ++ A C  G + + +  L EM +K   P +   +  + G
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGG 285

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G ++ A ++   M+++G   D  T+  L++  CK    +    ++ S+   GL  +
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPN 345

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI    K G I+EA R+   ++  G K     Y  +I G+ + G+   A   F+
Sbjct: 346 RFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFN 405

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM + G  P+   Y +LI    +     +A   L EM    LTP    + ++  GL  C 
Sbjct: 406 EMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL--CH 463

Query: 312 KHDLAEKIELLEVSLRS 328
             DL +  E+L+  +R+
Sbjct: 464 SSDLQKANEVLDQMIRN 480



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 125/306 (40%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +LM    L     T +L+++ F K      A  +F    +         Y +L+    + 
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   MI +G   +  TY  ++     +G+M +A     EM   G  P     
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTY 419

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +LL+ G L +  +  A +++ +M  +       T++ LI  +C S +++   E+   + +
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V  Y  LI A  +    + A  LL  ++ +G  P    Y  +I G+ R  + ++
Sbjct: 480 NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEE 539

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     +M  KG  PN   Y   I +  + G    A  Y  +M   G+ P +  + ++  
Sbjct: 540 AKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIK 599

Query: 306 GLKNCG 311
           G  + G
Sbjct: 600 GHCDVG 605



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 134/333 (40%), Gaps = 40/333 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL--FALCEVKLFHGAYALIRRMIR 80
           +I  F K G ++ A +++++         +++YN+L+  +  C+      A+ L   MI 
Sbjct: 667 LISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMIS 726

Query: 81  KGFVPDKRTYAILVN----------------------------------AWCSSGKMREA 106
           KG  PD   Y IL++                                  ++C  GK+ EA
Sbjct: 727 KGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEA 786

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +E   +M DK   P +    +L+     A  +E A+Q+   M  +  + +  T+ SL+ +
Sbjct: 787 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 846

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
             + G     + ++  +   G+  D   Y ++  A  K G   EA +LL+  + +G K  
Sbjct: 847 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 906

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             ++  +I  + +  Q        SEM  +    +      L+    + G   EA+  L 
Sbjct: 907 DDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG 966

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            M  +G  P S     +TD + + G+ D+   I
Sbjct: 967 VMQRLGWVPTSLS---LTDSI-STGRDDMKSDI 995



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 20/251 (7%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ-----GLLNA------- 135
            +Y+IL    C+SG + +A   L+++  +   PP+   D LV+     G  N        
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLL-QTRKPPLEILDSLVRCYREFGGSNLTVFDIFI 179

Query: 136 ------GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                 G+L  A  +    I +GF   L   N+L+  + K+  +    ++Y S+ +  + 
Sbjct: 180 DKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIV 239

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            DV TY  +I A  K G + +   +L  + E   KP    Y   I G+ + G  D+A   
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEV 298

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  KG  P+   YT+L+    +  R  EA      M   GL P    +  + DG   
Sbjct: 299 KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIK 358

Query: 310 CGKHDLAEKIE 320
            G  + A +I+
Sbjct: 359 EGNIEEALRIK 369



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 35/207 (16%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ +GK  +++ A ++F      N     L Y SLL +  ++       +L + M
Sbjct: 804 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 863

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   D   Y ++ +A+C  GK  EA + L                            
Sbjct: 864 EARGIACDAIAYGVMASAYCKEGKSLEALKLL---------------------------- 895

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                  NK + +G  L+ + F++LI  +CK  ++   +E+   + K  L     T   L
Sbjct: 896 -------NKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTL 948

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +    K+G  DEA ++L  +   G  P
Sbjct: 949 LLGFYKSGNEDEASKVLGVMQRLGWVP 975


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V  +T + ++    + G +D A  +  +     C    + YN+L+   C  K    A+  
Sbjct: 503 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 562

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M+++G  PD  TY+IL+    +  K+ EA +F  +    G  P V    +++ G   
Sbjct: 563 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 622

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           A   E  ++  ++M+ +    +   +N LI   C+SG +   +E+   +   G+  + +T
Sbjct: 623 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 682

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  +S    ++EA  L   +  +G +P    Y  +I G  + GQ     C   EM 
Sbjct: 683 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 742

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            K   PN+  YT++I    R G   EA+  L EM E G+ P S
Sbjct: 743 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 785



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 142/312 (45%), Gaps = 8/312 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKL 67
           N+S     L+ +I    KHG    A+E++    NK    + +      N+LL  LCE   
Sbjct: 465 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS----NALLHGLCEAGK 520

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ + + ++ +G V D+ +Y  L++  C   K+ EA  FL EM  +G  P      +
Sbjct: 521 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 580

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL N   +E A Q  +   + G + D+ T++ +I+  CK+   E   E +  +    
Sbjct: 581 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 640

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  LI A  ++G +  A  L  ++   G  P  + Y  +IKGM    + ++A 
Sbjct: 641 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 700

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM+++G  PN   YT LI   G+ G+ V+    L EM    + P    + ++  G 
Sbjct: 701 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 760

Query: 308 KNCGKHDLAEKI 319
              G    A ++
Sbjct: 761 ARDGNVTEASRL 772



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 4/304 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALC 63
           +LM    LS++  T + +I+ + K+G  DNA  +  +     FN  Q    + S++  LC
Sbjct: 389 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS--FTSVICLLC 446

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              +F  A   +  M+ +   P       L++  C  GK  +A E   +  +KGF    R
Sbjct: 447 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 506

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL  AG L+ A ++  +++ +G V+D  ++N+LI   C   +++        +
Sbjct: 507 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 566

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K GL  D  TY ILI  +     ++EA +   +   +G  P    Y+ +I G  +  + 
Sbjct: 567 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 626

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++   FF EM  K   PN  VY  LI    R GR   A     +M   G++P S  +  +
Sbjct: 627 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 686

Query: 304 TDGL 307
             G+
Sbjct: 687 IKGM 690



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 37/335 (11%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     +  I  F K G V+ AV++F+K         V+ +N+++  L     +  A+
Sbjct: 256 VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAF 315

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M+ +G  P   TY+ILV     + ++ +A   L+EM+ KGF P V   + L+   
Sbjct: 316 MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSF 375

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           + AG L  A ++ + M+ +G  L   T+N+LI+  CK+G+ +    +   +  +G   + 
Sbjct: 376 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 435

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR------------ 240
            ++  +I  +    M D A R +  ++     P   L   +I G+ +             
Sbjct: 436 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ 495

Query: 241 -----------------------GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
                                  G+ D+AF    E+  +G   +R  Y  LI+ C    +
Sbjct: 496 FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKK 555

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             EA  +L EM + GL P +  + ++  GL N  K
Sbjct: 556 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 590



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + +I+  G  G  D A     K      +  ++ Y+ L+  L   K    AY
Sbjct: 291 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 350

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +++ M +KGF P+   Y  L++++  +G + +A E    M  KG +      + L++G 
Sbjct: 351 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 410

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNS------------------------------ 162
              G  ++A++++ +M+  GF ++  +F S                              
Sbjct: 411 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 470

Query: 163 -----LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
                LI  +CK G+    +E+++     G   D  T   L+  + +AG +DEAFR+   
Sbjct: 471 GLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKE 530

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++  G       Y  +I G   + + D+AF F  EM  +G  P+   Y++LI       +
Sbjct: 531 ILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 590

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             EA  +  +    G+ P    + ++ DG
Sbjct: 591 VEEAIQFWDDCKRNGMLPDVYTYSVMIDG 619



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L+ + + A C+      A  L  +M   G  P+  T+  +++     G+  EA  F +
Sbjct: 260 VYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKE 319

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M ++G  P +    +LV+GL  A  +  A  ++ +M K+GF  ++  +N+LI++  ++G
Sbjct: 320 KMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAG 379

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   +E+   +   GL    STY  LI    K G  D A RLL  ++  G       + 
Sbjct: 380 SLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFT 439

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  +     FD A  F  EM ++   P   + T LI+   + G+  +A     +    
Sbjct: 440 SVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNK 499

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           G    +R  + +  GL   GK D A +I+
Sbjct: 500 GFVVDTRTSNALLHGLCEAGKLDEAFRIQ 528



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 6/243 (2%)

Query: 87  KRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           ++   +L+  +C+  K      A +    +++KG  P     ++L+  L+ A   +   +
Sbjct: 188 RKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCE 247

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
             + ++ +G   D+  F + I   CK G+VE  V+++  + + G+  +V T+  +I  + 
Sbjct: 248 AFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 306

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             G  DEAF     +VE G +P    Y+ ++KG+ R  +  DA+    EM  KG PPN  
Sbjct: 307 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 366

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--EL 321
           VY  LI      G   +A      M   GL+  S  ++ +  G    G+ D AE++  E+
Sbjct: 367 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 426

Query: 322 LEV 324
           L +
Sbjct: 427 LSI 429



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T N L+ ++ ++ E + C E +  VCK G+  DV  +   I A  K G ++EA +L   +
Sbjct: 228 TCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 286

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G  P    +  +I G+   G++D+AF F  +M  +G  P    Y++L+    R  R 
Sbjct: 287 EEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRI 346

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            +A   L EMT+ G  P    ++ + D     G  + A +I+ L VS
Sbjct: 347 GDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 393



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 5/240 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I        V+ A++ ++ C        V  Y+ ++   C+ + 
Sbjct: 571 LKPDNY-----TYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 625

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                     M+ K   P+   Y  L+ A+C SG++  A E  ++M  KG +P       
Sbjct: 626 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 685

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++G+     +E AK +  +M  +G   ++  + +LI+   K G++     +   +    
Sbjct: 686 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 745

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY ++I   ++ G + EA RLL+ + E G  P    Y   I G  ++G   +AF
Sbjct: 746 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 805



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K    +   E F++  + N Q   ++YN L+ A C       A  L   M
Sbjct: 612 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 671

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+       ++ EA+   +EM  +G  P V     L+ G    G +
Sbjct: 672 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 731

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + ++ +M  +    +  T+  +I    + G V     +   + + G+  D  TYK  
Sbjct: 732 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 791

Query: 199 IPAVSKAGMIDEAFR 213
           I    K G + EAF+
Sbjct: 792 IYGYLKQGGVLEAFK 806


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 159/333 (47%), Gaps = 13/333 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y ++    T +++I  F  +G+VD+   +FN  + F C+  V+ YN+L+  LC  
Sbjct: 209 EMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRA 268

Query: 66  KLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                AY +++ M +K     P+  TY  L+  +C+  ++ +A    +EM ++G      
Sbjct: 269 GKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNI 328

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L++GL  A   E  K ++      G F  D  TFN+L+   C +G ++  ++++  
Sbjct: 329 TYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFER 388

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-------DGHKPFPSLYAPIIK 235
           + +L +  D +TY  L+ ++ + G  ++A  LL  L+E       DG KP  + Y PI K
Sbjct: 389 MSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFK 448

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A   F ++  +G   + P Y  LI    + G F      LV M      P
Sbjct: 449 YLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXP 507

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               ++ + +GL +  K  LA  ++ LE  LRS
Sbjct: 508 DFETYESLINGLLHMDKPLLA--LQSLEKMLRS 538



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 17/310 (5%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK- 81
           ++  F + GL   +++VF    +      V+ +NSLL  L +    + A  +   M+   
Sbjct: 155 LMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTY 214

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  T+ IL+  +C +G + +      ++S  G  P V   + LV GL  AG +  A
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVA 274

Query: 142 KQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
             +V  M K+   L  ++ T+ +LI   C   E+E  + ++  +   GL A+  TY  LI
Sbjct: 275 YNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLI 334

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFF---SEMKI 255
             + +A   ++   +L     DG   P    +  ++      G  DDA   F   SE+KI
Sbjct: 335 KGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKI 394

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM-------GLTPISRCFDLVTDGLK 308
           +   P+   Y+ L+    +GG + +A + L ++ E        G  P+   ++ +   L 
Sbjct: 395 Q---PDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLC 451

Query: 309 NCGKHDLAEK 318
             GK   AEK
Sbjct: 452 ETGKTKKAEK 461



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 8/228 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-------TAFNCQQCVLLY 55
           K  E M    +     T S ++    + G  + A ++ +K        +   C+  V  Y
Sbjct: 384 KVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAY 443

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +   LCE      A    R+++R+G   D  +Y  L+   C  G      E L  M  
Sbjct: 444 NPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLR 502

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           K F P     + L+ GLL+      A Q + KM++     +  TF+S++  + + G    
Sbjct: 503 KDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASE 562

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
              +   +    +  ++S     +  +  AGM D+AF+L+H L   G+
Sbjct: 563 SASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGY 610



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 38/203 (18%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC---------------- 98
           Y +L+   C+   F   Y L+  M+RK F PD  TY  L+N                   
Sbjct: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKML 536

Query: 99  -------------------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                                G+  E+   +Q M DK     +      V+ L  AG  +
Sbjct: 537 RSSHRPNSSTFHSILAKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMND 596

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A Q+V+ +  +G+ + +E    LI  +C   +V    ++     +     D+     +I
Sbjct: 597 KAFQLVHLLYGKGYSVKME---ELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVI 653

Query: 200 PAVSKAGMIDEAFRLLHNLVEDG 222
             + +   + EAF L + LVE G
Sbjct: 654 FQLCEINKLSEAFSLYYKLVEMG 676


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G +  A+ +F           VL YN L+   C +    GA  L   M
Sbjct: 372 TYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEM 431

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +  +PD  TY IL+N  C    +   + F  EM  KG  P     +  +   L  G +
Sbjct: 432 TEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAI 491

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +A Q+  +M+ +G   D  T+N LI+ +CK+G ++    ++  +   GL  D  TY  L
Sbjct: 492 TNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCL 551

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  + G + EA  +   +V  G  P    Y   I    RRG    A+ +F +M  +G 
Sbjct: 552 IHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGV 611

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y +L+    R GR   A  +  EM E GL P    + L+ DG  +C + +    
Sbjct: 612 EPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDG--SCKEGNWVHA 669

Query: 319 IEL 321
           I L
Sbjct: 670 IRL 672



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 138/313 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   L  +  T +++I+ + + G ++ A  +  + T  +C   V  Y  L+   C V+ 
Sbjct: 396 LKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRN 455

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                     M+ KG  PD   Y   ++A  + G +  A +  +EM  +G +      ++
Sbjct: 456 LAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNV 515

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G L+ A  +  KM+  G  LD  T+  LI   C+ G +     ++  +   G
Sbjct: 516 LIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASG 575

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L   V TY I I    + G +  A+     ++E+G +P    Y  ++  + R G+ + A+
Sbjct: 576 LSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAY 635

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM  +G  PN+  YT+LI    + G +V A     EM + G+ P     + +  G 
Sbjct: 636 QHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQKGIHPDHCTHNALFKGF 695

Query: 308 KNCGKHDLAEKIE 320
                +D  + +E
Sbjct: 696 GEGHMYDAVQYLE 708



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 106/244 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+  L +      A      M  KG +PD  TY  L+N +C +G +++A     
Sbjct: 335 VVTYNTLIDGLFKTGNAEAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFG 394

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++   G  P V   ++L+ G    G LE A+++  +M ++  + D+ T+  L+   C   
Sbjct: 395 DLKRAGLGPTVLTYNILIDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVR 454

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +      +  +   GL  D   Y   I A    G I  AF+L   ++  G       Y 
Sbjct: 455 NLAMVRIFFDEMLSKGLEPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYN 514

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G   DA+  + +M   G   +   YT LI      GR +EA N    M   
Sbjct: 515 VLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCERGRLIEAKNIFDGMVAS 574

Query: 292 GLTP 295
           GL+P
Sbjct: 575 GLSP 578



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 142/354 (40%), Gaps = 56/354 (15%)

Query: 14  SVSPQTLSLIIEEFGKHGLV-------------------DNAVEVFNKCTAFNCQQCVLL 54
           S S Q LS   +E  +HG+                    D+   V++       +  +  
Sbjct: 173 SCSTQCLS-AFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFT 231

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEF--- 109
           YN+LL + C+      A AL++ M  +  G +P+  TY +++N     G++ +A +    
Sbjct: 232 YNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDI 291

Query: 110 -------------------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                                          L EM ++G  P V   + L+ GL   G  
Sbjct: 292 MRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNA 351

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A+   ++M  +G + DL T+NSLI   CK+G ++  + ++  + + GL   V TY IL
Sbjct: 352 EAAQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNIL 411

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G ++ A RL   + E+   P    Y  ++ G            FF EM  KG 
Sbjct: 412 IDGYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGL 471

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   Y   I+     G    A     EM   G++  +  ++++ DGL   G 
Sbjct: 472 EPDCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGS 525



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 1/214 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    +S    T +++I+   K G + +A  ++ K      +   + Y  L+ A CE 
Sbjct: 499 EEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGLRLDCVTYTCLIHAHCER 558

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   M+  G  P   TY I ++ +C  G +  A  + ++M ++G  P     
Sbjct: 559 GRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYGWFRKMLEEGVEPNEVTY 618

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L+  L   G  ESA Q  ++M+++G V +  T+  LI+  CK G     + +Y  + +
Sbjct: 619 NVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSCKEGNWVHAIRLYCEMHQ 678

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
            G+  D  T+  L     +  M D A + L N+V
Sbjct: 679 KGIHPDHCTHNALFKGFGEGHMYD-AVQYLENVV 711



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 3/247 (1%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M R G  P  +    ++     + +  + +    +M   G  P +   + L+     A
Sbjct: 183 QEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQLGVEPSIFTYNTLLDSFCKA 242

Query: 136 GYLESAKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           G ++ A  ++  M  +  G + +  T+N +I  + + GE+E   ++   + +L   A   
Sbjct: 243 GRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLV-DIMRLSKKASAF 301

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI  +     +++A  LL  +  +G  P    Y  +I G+F+ G  + A   F EM
Sbjct: 302 TYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEM 361

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + KG  P+   Y  LI    + G   +A     ++   GL P    ++++ DG    G  
Sbjct: 362 RAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDL 421

Query: 314 DLAEKIE 320
           + A +++
Sbjct: 422 EGARRLK 428


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 127/265 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +++ +LC+  L      L   M  +G  PD   Y+ +++  C +G+   A+    EM 
Sbjct: 241 YCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMV 300

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D+G +P V   ++L+  L  AG +E A  ++  MI++G   D  T+N+LI+  C  G ++
Sbjct: 301 DEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRID 360

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              +++ S+   G+  D  +Y +LI    K+G + EA +L   ++     P    Y  ++
Sbjct: 361 DARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLL 420

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+FR G+  DA+  F EMK+    P    Y +L+    +     EA      +      
Sbjct: 421 TGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQ 480

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P  + F+ + DGL    K ++A ++
Sbjct: 481 PSIQIFNCLIDGLCKARKIEIAREL 505



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 147/346 (42%), Gaps = 43/346 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  +     VD  + V  +          + + SL+  LC       A  L+R+M
Sbjct: 129 TLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKM 188

Query: 79  IRKGFVPDKRTYAILVNAWCSSG------KMRE--------------------------- 105
           +R G+ P+  TY  L+N  C +G      K+ E                           
Sbjct: 189 VRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSL 248

Query: 106 --------AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                    +E   EM  +G +P V     ++ G+ + G  E AK + N+M+ +G   ++
Sbjct: 249 CKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNV 308

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            TFN LI+ +CK+G++E    +   + + G   D  TY  LI      G ID+A  L  +
Sbjct: 309 VTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVS 368

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +   G +     Y  +I G  + G+  +A   + EM  K   P    Y  L+T   R G+
Sbjct: 369 MESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGK 428

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
             +A N   EM    LTP S  ++++ DGL  C  + L+E +EL  
Sbjct: 429 VRDAWNLFGEMKVHDLTPESCTYNILLDGL--CKNNHLSEAMELFH 472



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 146/316 (46%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +S      S II      G  + A  +FN+         V+ +N L+ ALC+   
Sbjct: 264 MKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGK 323

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L++ MI++G  PD  TY  L++ +C  G++ +A++    M  KG        ++
Sbjct: 324 MEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNV 383

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   +G +  AK++  +M+ +  +  + T+N+L+  + + G+V     ++  +    
Sbjct: 384 LINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHD 443

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY IL+  + K   + EA  L H L     +P   ++  +I G+ +  + + A 
Sbjct: 444 LTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAR 503

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F+ +  +G  PN   YT++I    + G+   A +  + M E G  P    F+ +  G 
Sbjct: 504 ELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF 563

Query: 308 KNCGKHDLAEKIELLE 323
             C   ++ + +ELL+
Sbjct: 564 --CQNDEMQKVVELLQ 577



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 137/290 (47%), Gaps = 6/290 (2%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VFN          +  +N+LL A+ ++K +    +L +RM   G  PD  T  IL+N
Sbjct: 76  AFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILIN 135

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C+  K+      L EM  +G +P       LV+GL     +  A  ++ KM++ G+  
Sbjct: 136 CYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRP 195

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCK------LGLCADVSTYKILIPAVSKAGMID 209
           ++ T+ +L+  +C +G     V+++  +        + +  ++  Y  +I ++ K G+ID
Sbjct: 196 NVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLID 255

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +   L   +   G  P    Y+ II GM   G+++ A   F+EM  +G  PN   + +LI
Sbjct: 256 KGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLI 315

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               + G+  EA + L  M + G +P +  ++ + DG    G+ D A  +
Sbjct: 316 DALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 125/287 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A  +               YN+L+   C       A  L   M
Sbjct: 310 TFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSM 369

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D  +Y +L+N +C SG+M EA++  +EM  K   P V   + L+ GL   G +
Sbjct: 370 ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKV 429

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  +M       +  T+N L++ +CK+  +   +E+++ +        +  +  L
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCL 489

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  I+ A  L + L  +G +P    Y  +I G+ + GQ ++A   F  M+ KG 
Sbjct: 490 IDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGC 549

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            PN   +  L+    +     +    L EM E   +P +    +V D
Sbjct: 550 APNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVD 596



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 124/281 (44%), Gaps = 2/281 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP T +   +I+ F   G +D+A ++F    +   +   + YN L+   C+      A  
Sbjct: 340 SPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKK 399

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L R M+ K  +P   TY  L+      GK+R+A     EM      P     ++L+ GL 
Sbjct: 400 LYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLC 459

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
              +L  A ++ + +    F   ++ FN LI+ +CK+ ++E   E++  +   GL  +V 
Sbjct: 460 KNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVI 519

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY ++I  + K+G ++ A  L   + E G  P    +  +++G  +  +         EM
Sbjct: 520 TYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEM 579

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             K   P+    ++++ +  +  ++ E  + L      G T
Sbjct: 580 AEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQT 620



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 39/212 (18%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     MK ++L+    T +++++   K+  +  A+E+F+     + Q  + ++N L+  
Sbjct: 433 WNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDG 492

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+ +    A  L  R+  +G  P+  TY ++++  C SG++  A++    M +KG  P 
Sbjct: 493 LCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAP- 551

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                                             +L TFN+L+   C++ E++  VE+  
Sbjct: 552 ----------------------------------NLVTFNTLMRGFCQNDEMQKVVELLQ 577

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
            + +     D ST  I++  +SK    DE +R
Sbjct: 578 EMAEKDFSPDASTISIVVDLLSK----DEKYR 605



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 101/279 (36%), Gaps = 43/279 (15%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEF--LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
            PD+      + + C SG ++ ++ F     + D    PP+   + L+  +         
Sbjct: 52  APDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDV 111

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             +  +M   G   D  T N LI   C   +V+F + +   + + G   +  T+  L+  
Sbjct: 112 ISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKG 171

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPF----------------------------------- 226
           +     I EA  LL  +V  G++P                                    
Sbjct: 172 LCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFG 231

Query: 227 ----PSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
               P+L  Y  II  + + G  D     F EMK +G  P+   Y+ +I      GR+  
Sbjct: 232 VTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEG 291

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A     EM + G+ P    F+++ D L   GK + A  +
Sbjct: 292 AKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHL 330


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V  +T + ++    + G +D A  +  +     C    + YN+L+   C  K    A+  
Sbjct: 516 VDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 575

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M+++G  PD  TY+IL+    +  K+ EA +F  +    G  P V    +++ G   
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           A   E  ++  ++M+ +    +   +N LI   C+SG +   +E+   +   G+  + +T
Sbjct: 636 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI  +S    ++EA  L   +  +G +P    Y  +I G  + GQ     C   EM 
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 755

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            K   PN+  YT++I    R G   EA+  L EM E G+ P S
Sbjct: 756 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 798



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 142/312 (45%), Gaps = 8/312 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVF----NKCTAFNCQQCVLLYNSLLFALCEVKL 67
           N+S     L+ +I    KHG    A+E++    NK    + +      N+LL  LCE   
Sbjct: 478 NMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTS----NALLHGLCEAGK 533

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ + + ++ +G V D+ +Y  L++  C   K+ EA  FL EM  +G  P      +
Sbjct: 534 LDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSI 593

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL N   +E A Q  +   + G + D+ T++ +I+  CK+   E   E +  +    
Sbjct: 594 LICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKN 653

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   Y  LI A  ++G +  A  L  ++   G  P  + Y  +IKGM    + ++A 
Sbjct: 654 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 713

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM+++G  PN   YT LI   G+ G+ V+    L EM    + P    + ++  G 
Sbjct: 714 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 773

Query: 308 KNCGKHDLAEKI 319
              G    A ++
Sbjct: 774 ARDGNVTEASRL 785



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 138/304 (45%), Gaps = 4/304 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK--CTAFNCQQCVLLYNSLLFALC 63
           +LM    LS++  T + +I+ + K+G  DNA  +  +     FN  Q    + S++  LC
Sbjct: 402 DLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS--FTSVICLLC 459

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              +F  A   +  M+ +   P       L++  C  GK  +A E   +  +KGF    R
Sbjct: 460 SHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 519

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + L+ GL  AG L+ A ++  +++ +G V+D  ++N+LI   C   +++        +
Sbjct: 520 TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 579

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K GL  D  TY ILI  +     ++EA +   +   +G  P    Y+ +I G  +  + 
Sbjct: 580 VKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 639

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++   FF EM  K   PN  VY  LI    R GR   A     +M   G++P S  +  +
Sbjct: 640 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 699

Query: 304 TDGL 307
             G+
Sbjct: 700 IKGM 703



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 37/335 (11%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP     +  I  F K G V+ AV++F+K         V+ +N+++  L     +  A+
Sbjct: 269 VSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAF 328

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M+ +G  P   TY+ILV     + ++ +A   L+EM+ KGF P V   + L+   
Sbjct: 329 MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSF 388

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           + AG L  A ++ + M+ +G  L   T+N+LI+  CK+G+ +    +   +  +G   + 
Sbjct: 389 IEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQ 448

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR------------ 240
            ++  +I  +    M D A R +  ++     P   L   +I G+ +             
Sbjct: 449 GSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQ 508

Query: 241 -----------------------GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
                                  G+ D+AF    E+  +G   +R  Y  LI+ C    +
Sbjct: 509 FLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKK 568

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             EA  +L EM + GL P +  + ++  GL N  K
Sbjct: 569 LDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 603



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 37/329 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + +I+  G  G  D A     K      +  ++ Y+ L+  L   K    AY
Sbjct: 304 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 363

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +++ M +KGF P+   Y  L++++  +G + +A E    M  KG +      + L++G 
Sbjct: 364 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 423

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNS------------------------------ 162
              G  ++A++++ +M+  GF ++  +F S                              
Sbjct: 424 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 483

Query: 163 -----LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
                LI  +CK G+    +E+++     G   D  T   L+  + +AG +DEAFR+   
Sbjct: 484 GLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKE 543

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           ++  G       Y  +I G   + + D+AF F  EM  +G  P+   Y++LI       +
Sbjct: 544 ILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 603

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             EA  +  +    G+ P    + ++ DG
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDG 632



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 122/269 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L+ + + A C+      A  L  +M   G  P+  T+  +++     G+  EA  F +
Sbjct: 273 VYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKE 332

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M ++G  P +    +LV+GL  A  +  A  ++ +M K+GF  ++  +N+LI++  ++G
Sbjct: 333 KMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAG 392

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   +E+   +   GL    STY  LI    K G  D A RLL  ++  G       + 
Sbjct: 393 SLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFT 452

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  +     FD A  F  EM ++   P   + T LI+   + G+  +A     +    
Sbjct: 453 SVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNK 512

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           G    +R  + +  GL   GK D A +I+
Sbjct: 513 GFVVDTRTSNALLHGLCEAGKLDEAFRIQ 541



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 114/243 (46%), Gaps = 6/243 (2%)

Query: 87  KRTYAILVNAWCSSGKMRE---AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           ++   +L+  +C+  K      A +    +++KG  P     ++L+  L+ A   +   +
Sbjct: 201 RKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCE 260

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
             + ++ +G   D+  F + I   CK G+VE  V+++  + + G+  +V T+  +I  + 
Sbjct: 261 AFD-VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLG 319

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             G  DEAF     +VE G +P    Y+ ++KG+ R  +  DA+    EM  KG PPN  
Sbjct: 320 MCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 379

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--EL 321
           VY  LI      G   +A      M   GL+  S  ++ +  G    G+ D AE++  E+
Sbjct: 380 VYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEM 439

Query: 322 LEV 324
           L +
Sbjct: 440 LSI 442



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 1/167 (0%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T N L+ ++ ++ E + C E +  VCK G+  DV  +   I A  K G ++EA +L   +
Sbjct: 241 TCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKM 299

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G  P    +  +I G+   G++D+AF F  +M  +G  P    Y++L+    R  R 
Sbjct: 300 EEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRI 359

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
            +A   L EMT+ G  P    ++ + D     G  + A +I+ L VS
Sbjct: 360 GDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVS 406



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 106/240 (44%), Gaps = 5/240 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +KP N      T S++I        V+ A++ ++ C        V  Y+ ++   C+ + 
Sbjct: 584 LKPDNY-----TYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAER 638

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                     M+ K   P+   Y  L+ A+C SG++  A E  ++M  KG +P       
Sbjct: 639 TEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTS 698

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++G+     +E AK +  +M  +G   ++  + +LI+   K G++     +   +    
Sbjct: 699 LIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKN 758

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY ++I   ++ G + EA RLL+ + E G  P    Y   I G  ++G   +AF
Sbjct: 759 VHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAF 818



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K    +   E F++  + N Q   ++YN L+ A C       A  L   M
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+       ++ EA+   +EM  +G  P V     L+ G    G +
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQM 744

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              + ++ +M  +    +  T+  +I    + G V     +   + + G+  D  TYK  
Sbjct: 745 VKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEF 804

Query: 199 IPAVSKAGMIDEAFR 213
           I    K G + EAF+
Sbjct: 805 IYGYLKQGGVLEAFK 819


>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
 gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
          Length = 551

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 149/332 (44%), Gaps = 8/332 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+   L +S  T  LI+  + +   V  AVE F K + F  +  +  YN L+ 
Sbjct: 184 VWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLID 242

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L + K    A A+ + M RKG FVPD +TY +L+  W     +   +   QEM D G  
Sbjct: 243 TLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIR 302

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L+     +G  + A ++  +M   G +     +  LI  +     ++  ++ 
Sbjct: 303 PDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKY 362

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +    K G   +V T   ++ A  +A   + AF+++  + E    P    Y  I+  + +
Sbjct: 363 FEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIK 422

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             +F++A+  F  M + G  P    YTM++ M    GR   A N   +M E G+ P    
Sbjct: 423 SQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSNGRVDMALNVWKQMGERGVLPCMHM 482

Query: 300 FDLVTDGLKNCGKHDLAEKI----ELLEVSLR 327
           F  + +GL  C ++ L E      E+L+  +R
Sbjct: 483 FSALINGL--CFENRLEEACVYFQEMLDKGIR 512



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 120/278 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     ++ +      +  V+ Y  L+ A C+      A  +   
Sbjct: 271 KTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYE 330

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ ++    GF   V   + +V     A  
Sbjct: 331 MEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASK 390

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A +MV++M +     +  T++ ++  + KS + E    ++  +   G    ++TY +
Sbjct: 391 FEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTM 450

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++      G +D A  +   + E G  P   +++ +I G+    + ++A  +F EM  KG
Sbjct: 451 MVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 510

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P   +++ L      GGR   A     ++  +  TP
Sbjct: 511 IRPPGQLFSNLKEALVEGGRISLAQEMASKLDAIRKTP 548



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 68/147 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M+   +  + +T  +I+    K    + A  VF +     C+  +  Y  ++  
Sbjct: 395 FKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGM 454

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A  + ++M  +G +P    ++ L+N  C   ++ EA  + QEM DKG  PP
Sbjct: 455 FCSNGRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 514

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +    L + L+  G +  A++M +K+
Sbjct: 515 GQLFSNLKEALVEGGRISLAQEMASKL 541



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 85/211 (40%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP    ++I   G    +D A++ F +         V   N+++ A C    F  A+ ++
Sbjct: 339 SPHVYCMLINGLGSEERLDEALKYFEQYKKSGFPMEVPTCNAVVGAYCRASKFEHAFKMV 398

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M      P+ RTY ++++    S K  EA    Q M   G  P +    ++V    + 
Sbjct: 399 DEMRECKIGPNSRTYDVILHYLIKSQKFEEAYNVFQRMGMDGCEPQLNTYTMMVGMFCSN 458

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A  +  +M ++G +  +  F++LI  +C    +E     +  +   G+      +
Sbjct: 459 GRVDMALNVWKQMGERGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPPGQLF 518

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
             L  A+ + G I  A  +   L      PF
Sbjct: 519 SNLKEALVEGGRISLAQEMASKLDAIRKTPF 549


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 145/306 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K  + MK   L  +  T++++I+   K   +D A  +F       C    + + SL+  
Sbjct: 427 FKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDG 486

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      AY L  +M+    +P+   Y  L+ ++   G+  +  +  +EM  +G +P 
Sbjct: 487 LGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPD 546

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +R  +  +  +  AG     + +  ++  +GF+ D+ +++ LI  + K+G      E++Y
Sbjct: 547 LRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFY 606

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ + G   D   Y   I    K+G +++A++LL  +   G +P    Y  +I G+ +  
Sbjct: 607 AMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKID 666

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A+  F E K  G   N  +Y+ LI   G+ GR  EA   + E+ + GLTP    ++
Sbjct: 667 RLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWN 726

Query: 302 LVTDGL 307
            + D L
Sbjct: 727 CLLDAL 732



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 120/256 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y+ L+  L +       Y L   M  +G V D   Y   ++ +C SGK+ +A + L+
Sbjct: 582 VMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLE 641

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P V     ++ GL     L+ A  +  +    G  L++  ++SLI+   K G
Sbjct: 642 EMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVG 701

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++    +   + + GL  +V T+  L+ A+ KA  I+EA     N+      P    Y+
Sbjct: 702 RIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYS 761

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R  +F+ AF F+ EM+ +G  PN   YT +I    + G   EA++        
Sbjct: 762 ILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKAN 821

Query: 292 GLTPISRCFDLVTDGL 307
           G  P S  ++ + +GL
Sbjct: 822 GGVPDSASYNAIIEGL 837



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 133/289 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+  GK G VD+A  ++ +    +     ++Y SL+ +  +       + + + M
Sbjct: 479 TFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEM 538

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PD R     ++    +G+  + +   +E+  +GF P V    +L+ GL+ AG+ 
Sbjct: 539 IHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFA 598

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
               ++   M +QG VLD   +N+ I+  CKSG+V    ++   +   G    V TY  +
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K   +DEA+ L      +G +    +Y+ +I G  + G+ D+A+    E+  KG 
Sbjct: 659 IDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGL 718

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            PN   +  L+    +     EA      M  +  TP    + ++ +GL
Sbjct: 719 TPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGL 767



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 138/301 (45%), Gaps = 1/301 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK   L       ++ I+ FGK G VD A + F++  +       + Y S++  LC+
Sbjct: 256 LDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCK 315

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  +M +   VP    Y  ++  + S+GK  EA   L+    +G  P V  
Sbjct: 316 GNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIA 375

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G L  A +   +M K+    +L T+N LI+ +CK+GEVE   ++  ++ 
Sbjct: 376 YNCILTCLGKKGRLGEALRTFEEM-KKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMK 434

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  +V T  I+I  + KA  +DEA  +   +      P    +  +I G+ ++G+ D
Sbjct: 435 EAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVD 494

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA+  + +M      PN  VYT LI    + GR  +      EM   G +P  R  +   
Sbjct: 495 DAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYM 554

Query: 305 D 305
           D
Sbjct: 555 D 555



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 1/310 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K + L     T + +I    K   +D AVE+F +        C   YN+++  
Sbjct: 288 WKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMG 347

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R   +G +P    Y  ++      G++ EA    +EM  K   P 
Sbjct: 348 YGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMK-KDAAPN 406

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++L+  L  AG +E+A ++ + M + G   ++ T N +I+ +CK+ +++    ++ 
Sbjct: 407 LSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFE 466

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +       D  T+  LI  + K G +D+A+RL   +++    P   +Y  +IK  F+ G
Sbjct: 467 GMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCG 526

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +D    F EM  +G  P+  +    +    + G   +      E+   G  P    + 
Sbjct: 527 RKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYS 586

Query: 302 LVTDGLKNCG 311
           ++  GL   G
Sbjct: 587 ILIHGLVKAG 596



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 138/326 (42%), Gaps = 3/326 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T E MK  + + +  T +++I+   K G V+ A +V +          V+  N ++  L
Sbjct: 394 RTFEEMKK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRL 452

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ K    A ++   M  K   PD+ T+  L++     G++ +A    ++M D    P  
Sbjct: 453 CKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNA 512

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L++     G  E   ++  +MI +G   DL   N+ ++ + K+GE      ++  
Sbjct: 513 VVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEE 572

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   DV +Y ILI  + KAG   E + L + + E G       Y   I G  + G+
Sbjct: 573 IKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGK 632

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A+    EMK KG  P    Y  +I    +  R  EA     E    GL      +  
Sbjct: 633 VNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSS 692

Query: 303 VTDGLKNCGKHDLAEKI--ELLEVSL 326
           + DG    G+ D A  I  EL++  L
Sbjct: 693 LIDGFGKVGRIDEAYLIMEELMQKGL 718



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 131/314 (41%), Gaps = 9/314 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYALI 75
           + S++I    K G      E+F    A   Q CVL    YN+ +   C+    + AY L+
Sbjct: 584 SYSILIHGLVKAGFARETYELF---YAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLL 640

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P   TY  +++      ++ EA    +E    G    V     L+ G    
Sbjct: 641 EEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKV 700

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A  ++ +++++G   ++ T+N L++ + K+ E+   +  + ++  L    +  TY
Sbjct: 701 GRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITY 760

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI  + +    ++AF     + + G KP    Y  +I G+ + G   +A   F   K 
Sbjct: 761 SILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKA 820

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y  +I       R +EA     E    G    ++    + D L+   K + 
Sbjct: 821 NGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQ---KDEC 877

Query: 316 AEKIELLEVSLRSV 329
            E+  ++   LR +
Sbjct: 878 LEQAAIVGAVLREI 891



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 138/341 (40%), Gaps = 40/341 (11%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ--CVLLYNSLLFALCEVKLFHGAYA 73
           SP+T  L+I    +   V+ A+  F + T     Q  C   Y+SLL  + +   F     
Sbjct: 92  SPKT-DLVIGVLRRAKDVNQAISYF-RWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQ 149

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  M   GF P  +T   L+ +   S K+RE  + +Q M    F P       L+  L 
Sbjct: 150 ILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALS 209

Query: 134 NA-----------------------------------GYLESAKQMVNKMIKQGFVLDLE 158
           +                                    G L++A  ++++M       D+ 
Sbjct: 210 SVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIV 269

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            +N  I+   K+G+V+   + ++ +   GL  D  TY  +I  + K   +DEA  +   +
Sbjct: 270 LYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM 329

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            ++ + P    Y  +I G    G+FD+A+      K +G  P+   Y  ++T  G+ GR 
Sbjct: 330 EQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRL 389

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EA     EM +    P    ++++ D L   G+ + A K+
Sbjct: 390 GEALRTFEEMKK-DAAPNLSTYNVLIDMLCKAGEVEAAFKV 429



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   L ++    S +I+ FGK G +D A  +  +         V  +N LL AL + 
Sbjct: 676 EEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKA 735

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +  + A    + M      P+  TY+IL+N  C   K  +A  F QEM  +G  P     
Sbjct: 736 EEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITY 795

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
             ++ GL  AG +  A  +  +    G V D  ++N++IE +  S
Sbjct: 796 TTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYS 840



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 95/215 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  +++KG  P+  T+  L++A   + ++ EA    Q M +    P 
Sbjct: 697 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPN 756

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQG   +  T+ ++I  + K+G +     ++ 
Sbjct: 757 HITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFE 816

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D ++Y  +I  +S +    EA+++  
Sbjct: 817 RFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFE 851


>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 485

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 5/323 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  + +M+   + V+ +T  +I+ ++ +   VD AV  FN    +     +  +NSLL 
Sbjct: 121 MWDVVAIMRRQGV-VNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLC 179

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ K    A  +  +M  + F PD +TY+IL+  W  +  + + ++   +M D G  P
Sbjct: 180 ALCKSKNVRKAQEIFEQMNGR-FSPDAKTYSILLEGWGRAPNLPKMRKVYSDMLDAGCQP 238

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++V  L   G +E A  +V  M  +G       ++ L+ T      +E  V  +
Sbjct: 239 DIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATF 298

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  DV  Y  L+ A  K    D AFR++ ++   G  P    +  I+  +   
Sbjct: 299 LDMQKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISL 358

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A+  F  M IK   P+   YTM+I M     R   A      M      P    F
Sbjct: 359 GKDDEAYRVFRRM-IKRCQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTF 417

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ +GL  C K ++++   LLE
Sbjct: 418 SVLINGL--CDKGEVSQACVLLE 438



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 1/242 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K G V+ AV V    T+  CQ    +Y+ L+           A A    M
Sbjct: 242 TYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM 301

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G VPD   Y  LV A+C   K   A   + +M   G  P  R  ++++  L++ G  
Sbjct: 302 QKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILNKLISLGKD 361

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +MIK+    D +T+  +I+  C++  +E  ++++  +        + T+ +L
Sbjct: 362 DEAYRVFRRMIKR-CQPDSDTYTMMIKMFCENDRLEMALKVWKYMRLKQFLPSMHTFSVL 420

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + +A  LL +++E G +P  S +  + + + + G+ D       +MKI   
Sbjct: 421 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQ 480

Query: 259 PP 260
            P
Sbjct: 481 EP 482



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+ + ++ + +T ++I+ +    G  D A  VF +     CQ     Y  ++  
Sbjct: 330 FRVMDDMEGHGITPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKM 388

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  + + M  K F+P   T+++L+N  C  G++ +A   L++M +KG  PP
Sbjct: 389 FCENDRLEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPP 448

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L Q LL  G  +  + +V+KM
Sbjct: 449 GSTFGKLRQLLLKEGRKDVLEFLVDKM 475


>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
 gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
          Length = 1070

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +     +  C+  +L++N L+  LC +      Y +  +M   G  P + TY  
Sbjct: 456 LDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNS 515

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L    C     + A + L+EM   G  P ++    +VQ L  +G +  A Q ++ M++ G
Sbjct: 516 LFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIG 575

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCADVSTYKILIPAVSKAGMIDEA 211
           F+ D+ T+++ +  +C +GEV+  + ++  + CK  L  DV  + ILI    K+  +DEA
Sbjct: 576 FLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYL-PDVVAHNILINGFRKSSKLDEA 634

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            +++  ++E G  P    Y  +I    + G+ + A  +  +M  +   P    YT LI  
Sbjct: 635 QKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDG 694

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               GR  EA     EM E G  P +  +    +GL+ CG+ + A
Sbjct: 695 FCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETA 739



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I E      ++    +FN+            YNSL + +C  K    A  L+R M   G
Sbjct: 481 LIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNG 540

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P  +    +V   C SG++ EA +FL  M   GF P +      + G+ N G ++ A 
Sbjct: 541 HPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDAL 600

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   +  + ++ D+   N LI    KS +++   ++   + + GL   V TY ++I   
Sbjct: 601 HLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVC 660

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G I++A   L  +V +  +P    Y  +I G    G+ D+A   + EM+ KG  PN 
Sbjct: 661 CKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNN 720

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             YT  I    + GR   A  Y  EM   G 
Sbjct: 721 IAYTAFINGLRKCGRIETALTYFEEMVTKGF 751



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 147/331 (44%), Gaps = 24/331 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +S +TLS+++  F K G VD A+++F K  ++     + +Y+ L+  LC+ K 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD---KGFNPPVRG 124
              A  L + M   G  PD R    ++ A+C  G       F+ E ++    G   P+  
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVPL-- 388

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-------------------DLETFNSLIE 165
            +++++ L++ G +E+A Q++  M+  G  +                   + ++FN ++ 
Sbjct: 389 YNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVC 448

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK  +++  + +   +  LG    +  +  LI  +     ++E + + + + + G  P
Sbjct: 449 GLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTP 508

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +  G+ RR     A     EM+  GHPP     T ++      GR  EA  +L
Sbjct: 509 SEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFL 568

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             M ++G  P    +    +G+ N G+ D A
Sbjct: 569 DGMLQIGFLPDIVTYSAAMNGMCNTGEVDDA 599



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 117/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N ++  LC+VK    A AL + MI  G       +  L++  C+  ++ E      +M 
Sbjct: 443 FNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMK 502

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G  P     + L  G+      ++A  ++ +M   G    ++    +++ +C SG V 
Sbjct: 503 DLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVT 562

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V+    + ++G   D+ TY   +  +   G +D+A  L  ++    + P    +  +I
Sbjct: 563 EAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILI 622

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +  + D+A     EM  KG  P+   Y ++I +C + GR  +A +YL +M      
Sbjct: 623 NGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQ 682

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    +  + DG  + G+ D A K+
Sbjct: 683 PTVITYTSLIDGFCSAGRPDEAIKL 707



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 6/233 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++P  L  ++   G  GL D AV  F+   A F C      YN LL AL +      A A
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195

Query: 74  LIRRMIRK---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            +R M+ +   G V DK T   L+  +C++G+  +A +  Q MS+ G+        L+V 
Sbjct: 196 RLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMV- 253

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G ++ A +++  M   G  L  +T + L+    K G V+  ++M+  +   G   
Sbjct: 254 AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVV 313

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           D++ Y +LI  + +   I  A +L   +   G  P   L   +I+   R G F
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDF 366



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F K   +D A ++  +         V+ YN ++   C+      A + + +M+ 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVY 678

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P   TY  L++ +CS+G+  EA +   EM +KG  P        + GL   G +E+
Sbjct: 679 EEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIET 738

Query: 141 AKQMVNKMIKQGFVLD 156
           A     +M+ +GF LD
Sbjct: 739 ALTYFEEMVTKGFELD 754



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    L  S  T +L+I+   K G ++ A+   +K      Q  V+ Y SL+   
Sbjct: 636 KIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGF 695

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L   M  KG  P+   Y   +N     G++  A  + +EM  KGF    
Sbjct: 696 CSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDT 755

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                 +  L++ GY     +++ +++++
Sbjct: 756 FSLLYFINFLISNGYPMKGCELLKEVLQK 784


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 138/298 (46%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S+++    K G V  A +VF            ++YN+L+   C+V+   GA+ +  +M
Sbjct: 336 TCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQM 395

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+N  C    + +A++ + EM   G +P V   + L+     AG L
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E    +++ M ++G   D+ +F S+++  CK+G++   V +   +    +  +   Y  +
Sbjct: 456 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 515

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  ++G  ++A  L+  +   G       Y  ++KG+ R  Q D+A      ++ +G 
Sbjct: 516 IDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGL 575

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDL 315
            P+   Y  +I+ C   G   +A   L EM + G+ P  R    +   L + G+ HD+
Sbjct: 576 RPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDM 633



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 116/258 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+  LC++++   A  L+  M + G  P   T+  L++A+ ++G++ +    L +
Sbjct: 405 ITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSD 464

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  KG    V     +V+     G +  A  +++ MI +    + + +NS+I+   +SG+
Sbjct: 465 MQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGD 524

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            E  + +   +   G+ A + TY +L+  + ++  IDEA  L++ L   G +P    Y  
Sbjct: 525 TEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNT 584

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           II     +G  D A     EM   G  P       L++     GR  +      +M    
Sbjct: 585 IISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKN 644

Query: 293 LTPISRCFDLVTDGLKNC 310
           + P S  + ++ D    C
Sbjct: 645 VEPSSSIYGIMVDAYVRC 662



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 130/289 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  ++     T + +I    K  +V  A ++  +         V  +N+L+ A    
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 + ++  M +KG   D  ++  +V A+C +GK+ EA   L +M  K   P  +  
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++   + +G  E A  +V KM   G    + T+N L++ +C+S +++   E+ Y++  
Sbjct: 513 NSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  DV +Y  +I A    G  D+A  LL  + + G +P       ++  +   G+  D
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHD 632

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             C + +M  K   P+  +Y +++    R     + A+   EM+E G+ 
Sbjct: 633 MECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIA 681



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 120/287 (41%), Gaps = 6/287 (2%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
            E   K        C +L N     LC+      A  +   ++  G VP    Y  L+N 
Sbjct: 323 AESLKKGVMLGAYTCSILLN----GLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLING 378

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +C    +R A    ++M  +   P     + L+ GL     +  A+ +V +M K G    
Sbjct: 379 YCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPS 438

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           +ETFN+LI+    +G++E C  +   + + G+ +DV ++  ++ A  K G I EA  +L 
Sbjct: 439 VETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILD 498

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
           +++     P   +Y  II      G  + A     +MK  G   +   Y +L+    R  
Sbjct: 499 DMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSS 558

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +  EA   +  +   GL P    ++ +      C K D  + +ELL+
Sbjct: 559 QIDEAEELIYTLRNQGLRPDVVSYNTIISAC--CNKGDTDKALELLQ 603



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 112/258 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  L        A  +   M+  G  P++ TY  +++     G +        +M 
Sbjct: 197 YNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQML 256

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P V   ++L+ GL   G ++  + ++++M     + D  T++ L + + ++GE +
Sbjct: 257 HDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQ 316

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++    K G+     T  IL+  + K G + +A ++   LV  G  P   +Y  +I
Sbjct: 317 TMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLI 376

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +      AFC F +MK +   P+   Y  LI    +     +A + ++EM + G+ 
Sbjct: 377 NGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVD 436

Query: 295 PISRCFDLVTDGLKNCGK 312
           P    F+ + D     G+
Sbjct: 437 PSVETFNTLIDAYGTAGQ 454



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 136/345 (39%), Gaps = 37/345 (10%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + +I+   K G ++    + ++      +  V+ YN LL  LC      
Sbjct: 222 DMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMD 281

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              AL+  M     +PD  TY+IL +    +G+ +       E   KG         +L+
Sbjct: 282 ETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILL 341

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVL---------------------------------- 155
            GL   G +  AKQ+   ++  G V                                   
Sbjct: 342 NGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIR 401

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D  T+N+LI  +CK   V    ++   + K G+   V T+  LI A   AG +++ F +
Sbjct: 402 PDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV 461

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L ++ + G K     +  ++K   + G+  +A     +M  K   PN  VY  +I     
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G   +A   + +M   G++     ++L+  GL    + D AE++
Sbjct: 522 SGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEEL 566



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/305 (20%), Positives = 126/305 (41%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    + G   +A++VF++          + YN+++    +       + L  +M
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQM 255

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY +L++  C +G+M E +  + EM+     P      +L  GL   G  
Sbjct: 256 LHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGES 315

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++   +  + +K+G +L   T + L+  +CK G+V    +++  +   GL      Y  L
Sbjct: 316 QTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTL 375

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    +   +  AF +   +     +P    Y  +I G+ +      A     EM+  G 
Sbjct: 376 INGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGV 435

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   +  LI   G  G+  +    L +M + G+      F  V       GK  + E 
Sbjct: 436 DPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGK--IPEA 493

Query: 319 IELLE 323
           + +L+
Sbjct: 494 VAILD 498



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 2/205 (0%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVE 174
           G  P     + +VQ  + AG L+ A  M+ +M +       D  ++N +I  + +SG+  
Sbjct: 152 GARPDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 211

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +  +G+  +  TY  +I    K G ++  FRL   ++ DG KP    Y  ++
Sbjct: 212 DALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLL 271

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R G+ D+      EM      P+   Y++L     R G      +   E  + G+ 
Sbjct: 272 SGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVM 331

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +    ++ +GL   GK   A+++
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAKQV 356



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 66/152 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S S  T +L+++   +   +D A E+         +  V+ YN+++ A C 
Sbjct: 532 VEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCN 591

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L++ M + G  P  RT   LV+A  S+G++ + +   Q+M  K   P    
Sbjct: 592 KGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSI 651

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
             ++V   +          +  +M ++G   D
Sbjct: 652 YGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 134/305 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   L  +  T + +I+ +   G ++ A +  +K         V  YN L+ AL  
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL 343

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +I+ M  KG VPD  TY IL+N +C  G +++A     EM  KG  P    
Sbjct: 344 DCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVT 403

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+  L   G ++ A  +  K++++G   DL  FN+LI+  C +G ++    M   + 
Sbjct: 404 YTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMD 463

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           ++ +  D  T+  L+    + G ++ A  L+  +   G KP    Y  +I G  +RG   
Sbjct: 464 QMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMK 523

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DAF    EM   G  P    Y  LI    +      A   L EM   G+TP    +  + 
Sbjct: 524 DAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLI 583

Query: 305 DGLKN 309
           +G+ N
Sbjct: 584 EGIGN 588



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 142/325 (43%), Gaps = 8/325 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     M    +  S  T +++I    K G +  A E      A   +  V+ YN+++  
Sbjct: 176 WVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHG 235

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C      GA  +   M  +G  PD  TY   ++  C  GK+ EA   L++M + G  P 
Sbjct: 236 YCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPT 295

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI---CKSGEVEFCVE 178
               + L+ G  N G LE A    +KM+++G +  + T+N LI  +   CK  E +  ++
Sbjct: 296 AVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIK 355

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
               + + GL  D  TY ILI    + G + +AF L   ++  G +P    Y  +I  + 
Sbjct: 356 ---EMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLS 412

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           +RG+   A   F ++  KG  P+  ++  LI      G    A   L EM +M + P   
Sbjct: 413 KRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEV 472

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLE 323
            F+ +  G    GK + A   EL+E
Sbjct: 473 TFNTLMQGRCREGKVEAAR--ELIE 495



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 141/314 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +LMK   +     T    I    K G ++ A  +  K      +   + YN+L+   C  
Sbjct: 250 DLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNK 309

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+    +M+R+G +P   TY +L++A     KM EA   ++EMS+KG  P     
Sbjct: 310 GNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTY 369

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L+ G    G ++ A  + ++MI +G      T+ SLI  + K G ++   +++  + +
Sbjct: 370 NILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVR 429

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D+  +  LI      G +D AF +L  + +    P    +  +++G  R G+ + 
Sbjct: 430 KGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEA 489

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     EMK +G  P+   Y  LI+   + G   +A     EM  +G  P    ++ +  
Sbjct: 490 ARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQ 549

Query: 306 GLKNCGKHDLAEKI 319
           GL    + D AE++
Sbjct: 550 GLCKNEEGDHAEQL 563



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 126/290 (43%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           F K    + A  ++ +      +  V+ +N ++  LC+      A   I  M   G  P+
Sbjct: 166 FLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPN 225

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             TY  +++ +CS G++  A+     M  +G  P        + G+   G LE A  M+ 
Sbjct: 226 VVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLE 285

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           KM + G      T+N+LI+  C  G +E   +    + + GL   VSTY +LI A+    
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +DEA  ++  + E G  P    Y  +I G  R G    AF    EM  KG  P R  YT
Sbjct: 346 KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYT 405

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            LI +  + GR  +A +   ++   G+ P    F+ + DG    G  D A
Sbjct: 406 SLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRA 455



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 103/257 (40%), Gaps = 35/257 (13%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +L+ A C   +  +A E    M  KG  P V   + ++   L +   E A  +  +M 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVE--------------MYYSVCKLGLCA----- 190
           +      + TFN +I  +CK G+++   E              + Y+    G C+     
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 191 ----------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
                           D  TY   I  + K G ++EA  +L  + E G +P    Y  +I
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G   +G  + AF +  +M  +G  P    Y MLI       +  EA   + EM+E GL 
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 295 PISRCFDLVTDGLKNCG 311
           P S  ++++ +G   CG
Sbjct: 364 PDSVTYNILINGYCRCG 380


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 13/290 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I+   K   + +A +      +F     + +YN L+   C+      A +L   +
Sbjct: 300 TFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +   +PD  TY+IL+   C   +M EA   LQEM  KGF P     + L+ G    G +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++ ++M ++G   ++ TF++LI+  CK+G++E  + +Y  +   GL  DV  Y  L
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTAL 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF-------- 250
           I    K G   EAFRL   + E G  P     + +I G+ + G+  DA   F        
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDT 539

Query: 251 -----SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
                +E+      PN  +YT LI      GR  +A+ +  +M   GL P
Sbjct: 540 TGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRP 589



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 6/310 (1%)

Query: 11  YNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y + V P  Q  +++++   K G  D   +V+    A      V+ Y +L+   C    F
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ L   MI K   P    Y IL+   C   ++ EA+   + M + G  P +   + +
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G     +++ A ++  +M+  G + ++ TF  LI+ +CK+ E+    +    +   G+
Sbjct: 270 MDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDA 246
             ++  Y  LI    KAG + EA   LH+ +E  H+  P +  Y+ +IKG+    + ++A
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALS-LHSEIEK-HEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EMK KG  PN   Y  LI    + G   +A     +MTE G+ P    F  + DG
Sbjct: 388 DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447

Query: 307 LKNCGKHDLA 316
               GK + A
Sbjct: 448 YCKAGKMEAA 457



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 133/306 (43%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWK    M     S +  T   +I+   + G    A  +F++         V++Y  L+ 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR 236

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A ++ R M   G +P+  TY  +++ +C    +++A E   EM   G  P
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLP 296

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+ GL     + SA++ +  M   G V ++  +N LI+  CK+G +   + ++
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  DV TY ILI  +     ++EA  LL  + + G  P    Y  +I G  + 
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  + A    S+M  KG  PN   ++ LI    + G+   A     EM   GL P    +
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 301 DLVTDG 306
             + DG
Sbjct: 477 TALIDG 482



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 128/268 (47%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+++   C++     A  L   M+  G +P+  T+ IL++  C + +M  A++FL +M+
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   + L+ G   AG L  A  + +++ K   + D+ T++ LI+ +C    +E
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + K G   +  TY  LI    K G +++A  +   + E G +P    ++ +I
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ + A   ++EM IKG  P+   YT LI    + G   EA     EM E GL 
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
           P       + DGL  C    +++ I+L 
Sbjct: 506 PNVFTLSCLIDGL--CKDGRISDAIKLF 531



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 7/307 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P    ++I  F + GLV+ A+ V+ K       Q     N +L  L +   F   + + 
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC---NMVLDGLVKKGRFDTMWKVY 181

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+  TY  L++  C  G   +A     EM +K   P V    +L++GL   
Sbjct: 182 GDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             +  A+ M   M   G + +L T+N++++  CK   V+  +E+Y  +   GL  +V T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTF 301

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI  + K   +  A + L ++   G  P   +Y  +I G  + G   +A    SE++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               P+   Y++LI  +CG   R  EA   L EM + G  P +  ++ + DG   C + +
Sbjct: 362 HEILPDVFTYSILIKGLCGV-DRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY--CKEGN 418

Query: 315 LAEKIEL 321
           + + IE+
Sbjct: 419 MEKAIEV 425



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + K   V  A+E++ +         V+ +  L+  LC+      A   +  M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP+   Y  L++ +C +G + EA     E+      P V    +L++GL     +
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRM 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M K+GF+ +  T+N+LI+  CK G +E  +E+   + + G+  ++ T+  L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KAG ++ A  L   +V  G  P    Y  +I G F+ G   +AF    EM+  G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            PN    + LI    + GR  +A    +  T    T
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTT 540



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 26/294 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK      +  T + +I+ + K G ++ A+EV ++ T    +  ++ +++L+   C+
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   M+ KG +PD   Y  L++     G  +EA    +EM + G +P V  
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL   G +  A ++   + K G        N L  ++C    V     MY ++ 
Sbjct: 511 LSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSLCSPNHV-----MYTALI 563

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GLC D              G I +A +   ++   G +P       II+G FR     
Sbjct: 564 Q-GLCTD--------------GRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLR 608

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           D     +++   G  PN  VY +L       G    A ++  E    G+ P+ R
Sbjct: 609 DVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALSFCGE----GVQPLDR 658



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 30/291 (10%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIR-----------------------KGFVPDKRTY 90
           LY++++  L   KL+  A  L+R +I+                         F P+   +
Sbjct: 72  LYSAIIHVLTGAKLYAKARCLMRDLIQCLQKSRRSRICCSVFNVLSRLESSKFTPN--VF 129

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L+ A+   G + EA     +M      P ++  ++++ GL+  G  ++  ++   M+ 
Sbjct: 130 GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVA 186

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   ++ T+ +LI+  C+ G+      ++  + +  +   V  Y ILI  +     I E
Sbjct: 187 RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISE 246

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +   +   G  P    Y  ++ G  +      A   + EM   G  PN   + +LI 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILID 306

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              +    V A  +L++M   G+ P    ++ + DG   C   +L+E + L
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY--CKAGNLSEALSL 355


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II    K G+ D A++     +A  C   V+ YN LL +      +     L++ M
Sbjct: 238 TYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  T++IL++++C  G++REA   L+ M +KG  P     D L+      G L
Sbjct: 298 VLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRL 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + + KM+  G + D+  +N+++ T+CK G  +  ++++  + ++G    V  Y  +
Sbjct: 358 DLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTM 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A+   G   +A  ++  ++  G  P    Y  +I  + R G  D+A     +M+    
Sbjct: 418 FSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRF 477

Query: 259 PPNRPVYTM-LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P    + + L+ MC +  R  E    L+ M E G  P    + L+ +G+   G    AE
Sbjct: 478 QPTVISFNIVLLGMC-KAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWR--AE 534

Query: 318 KIEL 321
            +EL
Sbjct: 535 AMEL 538



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 136/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE     G ++ A+E+F++  +   +  +  YN+++  +C+  +   A   +R +
Sbjct: 203 TYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHL 262

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  +Y IL+ ++ +  +  + +  +++M   G  P V    +L+      G +
Sbjct: 263 SARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRV 322

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M ++G   D  +++ LI   CK G ++  +E    +   G   D+  Y  +
Sbjct: 323 REAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTI 382

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G  D A  +   L E G  P    Y  +   ++  G    A    SEM  KG 
Sbjct: 383 LATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGI 442

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y  LI+   R G   EA   LV+M      P    F++V  G+  C  H + E 
Sbjct: 443 DPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGM--CKAHRVFEG 500

Query: 319 IELL 322
           IELL
Sbjct: 501 IELL 504



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 124/265 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+++    +      A  +  RM  +GF PD  TY I++ + CS GK+  A E + 
Sbjct: 131 VYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMD 190

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           E+   G  P V    +L++  +  G +  A ++ ++++ +G   DL T+N++I  ICK G
Sbjct: 191 ELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEG 250

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +  ++    +   G   DV +Y IL+ +       ++  RL+ ++V  G +P    ++
Sbjct: 251 MEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHS 310

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    R G+  +A      MK KG  P+   Y  LI+   + GR   A  YL +M   
Sbjct: 311 ILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD 370

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P    ++ +   L   G  DLA
Sbjct: 371 GCLPDIVNYNTILATLCKFGCADLA 395



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 132/301 (43%), Gaps = 38/301 (12%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           LL   C     + +   +  ++ KGF PD      L+  + +S  +++A   ++ +   G
Sbjct: 68  LLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG 127

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
            +P V   + ++ G   A  ++SA Q+ ++M  +GF  D+ T+N +I ++C  G++E   
Sbjct: 128 -DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAF 186

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+   + K G    V TY ILI A    G I+EA  L   LV  G +P    Y  II+G+
Sbjct: 187 EVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGI 246

Query: 238 FRRGQFDDAFCF-----------------------------------FSEMKIKGHPPNR 262
            + G  D A  F                                     +M + G  PN 
Sbjct: 247 CKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             +++LI+   R GR  EA N L  M E GLTP S  +D +       G+ DLA  IE L
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLA--IEYL 364

Query: 323 E 323
           E
Sbjct: 365 E 365



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 149/325 (45%), Gaps = 12/325 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + +E+++ Y     P   S   +I  F K   +D+A +VF++  +      V+ YN ++ 
Sbjct: 118 RVMEILETYG---DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIG 174

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +LC       A+ ++  +++ G  P   TY IL+ A    G++ EA E   E+  +G  P
Sbjct: 175 SLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRP 234

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + +++G+   G  + A   V  +  +G   D+ ++N L+ +       E    + 
Sbjct: 235 DLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLM 294

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   +V T+ ILI +  + G + EA  +L  + E G  P    Y P+I    + 
Sbjct: 295 KDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKE 354

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           G+ D A  +  +M   G  P+   Y T+L T+C  G   + A +   ++ E+G  P  R 
Sbjct: 355 GRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADL-ALDVFEKLDEVGCPPTVRA 413

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEV 324
           ++ +   L +CG      KI+ LE+
Sbjct: 414 YNTMFSALWSCGN-----KIKALEM 433



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 108/246 (43%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  V+ ++ L+ + C       A  ++  M  KG  PD  +Y  L++A+C  G++  A 
Sbjct: 302 CEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAI 361

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E+L++M   G  P +   + ++  L   G  + A  +  K+ + G    +  +N++   +
Sbjct: 362 EYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
              G     +EM   + + G+  D  TY  LI  + + G++DEA  LL ++     +P  
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTV 481

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             +  ++ GM +  +  +       M  KG  PN   Y +LI      G   EA      
Sbjct: 482 ISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANS 541

Query: 288 MTEMGL 293
           +  +G+
Sbjct: 542 LYRLGV 547



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 102/218 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+MK   L+    +   +I  F K G +D A+E   K  +  C   ++ YN++L  LC+
Sbjct: 329 LEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCK 388

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +  ++   G  P  R Y  + +A  S G   +A E + EM  KG +P    
Sbjct: 389 FGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+  L   G ++ A  ++  M    F   + +FN ++  +CK+  V   +E+  ++ 
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMV 508

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           + G   + ++Y +LI  ++ AG   EA  L ++L   G
Sbjct: 509 EKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLG 546


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 2/296 (0%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L   P  +S   II  +   G ++ A  + +       +     Y SL+  +C+      
Sbjct: 256 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 315

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L  +M+  G VP+  TY  L++ +C+ G +  A  +  EM  KG  P V   +LLV 
Sbjct: 316 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 375

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G +  A  M+ +M K+G + D  T+N LI    + G  +   +++  +   G+  
Sbjct: 376 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 435

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY  LI  +S+   + EA  L   +++ G  P   ++  ++ G    G  + AF   
Sbjct: 436 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 495

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  K  PP+   +  L+    R G+  EA   L EM   G+ P    ++ +  G
Sbjct: 496 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 551



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 142/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   +     T   +I    K G ++ A  +F+K          + YN+L+   
Sbjct: 283 RILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 342

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A++    M++KG +P   TY +LV+A    G+M EA + ++EM  KG  P  
Sbjct: 343 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 402

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ G    G  + A  + N+M+ +G      T+ SLI  + +   ++   +++  
Sbjct: 403 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 462

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  DV  +  ++      G ++ AF LL  +      P    +  +++G  R G+
Sbjct: 463 ILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 522

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     EMK +G  P+   Y  LI+  GR G   +A     EM  +G  P    ++ 
Sbjct: 523 VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNA 582

Query: 303 VTDGLKNCGKHDLAEKI 319
           +   L    + DLAE++
Sbjct: 583 LIKCLCKNQEGDLAEEL 599



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 3/329 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K   +MK   +    +T + ++  F K   ++ A  ++ +         V  +N ++  
Sbjct: 177 FKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNV 236

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A   I  M   GF P+  +Y  +++ + S G +  A+  L  M  KG  P 
Sbjct: 237 LCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 296

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G+   G LE A  + +KM++ G V +  T+N+LI+  C  G++E       
Sbjct: 297 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 356

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+   VSTY +L+ A+   G + EA  ++  + + G  P    Y  +I G  R G
Sbjct: 357 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 416

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
               AF   +EM  KG  P    YT LI +  R  R  EA +   ++ + G++P    F+
Sbjct: 417 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 476

Query: 302 LVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
            + DG  +C   ++     LL E+  +SV
Sbjct: 477 AMVDG--HCANGNVERAFMLLKEMDRKSV 503



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 132/311 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     M    +S +  T ++++    K G +  A E          +  V+ YN+++  
Sbjct: 212 WVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHG 271

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                   GA  ++  M  KG  PD  TY  L++  C  G++ EA     +M + G  P 
Sbjct: 272 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 331

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ G  N G LE A    ++M+K+G +  + T+N L+  +   G +    +M  
Sbjct: 332 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+  D  TY ILI   S+ G   +AF L + ++  G +P    Y  +I  + RR 
Sbjct: 392 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 451

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A   F ++  +G  P+  ++  ++      G    A   L EM    + P    F+
Sbjct: 452 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFN 511

Query: 302 LVTDGLKNCGK 312
            +  G    GK
Sbjct: 512 TLMQGRCREGK 522



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 16/258 (6%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+E  K G++ +A+                 YN L+           A+ L   M+ KG
Sbjct: 389 MIKEMRKKGIIPDAIT----------------YNILINGYSRCGNAKKAFDLHNEMLSKG 432

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY  L+       +M+EA +  +++ D+G +P V   + +V G    G +E A 
Sbjct: 433 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAF 492

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ +M ++    D  TFN+L++  C+ G+VE    +   + + G+  D  +Y  LI   
Sbjct: 493 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 552

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G I +AFR+   ++  G  P    Y  +IK + +  + D A     EM  KG  P+ 
Sbjct: 553 GRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 612

Query: 263 PVYTMLITMCGRGGRFVE 280
             Y  LI   G     VE
Sbjct: 613 STYLSLIEGMGNVDTLVE 630



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P  +S   +I  +G+ G + +A  V ++  +      +L YN+L+  LC+ +    A 
Sbjct: 538 IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 597

Query: 73  ALIRRMIRKGFVPDKRTYAILV 94
            L++ M+ KG  PD  TY  L+
Sbjct: 598 ELLKEMVNKGISPDDSTYLSLI 619


>gi|15222753|ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g55630
 gi|30793841|gb|AAP40373.1| unknown protein [Arabidopsis thaliana]
 gi|30794021|gb|AAP40457.1| unknown protein [Arabidopsis thaliana]
 gi|110739296|dbj|BAF01561.1| hypothetical protein [Arabidopsis thaliana]
 gi|332195155|gb|AEE33276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M + I+ M       +  T +L+I   G+ GL  + VE F K   FN +     YN++L 
Sbjct: 171 MCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILH 230

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  VK +     +  +M+  GF PD  TY I++ A    GK       L EM   GF+P
Sbjct: 231 SLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSP 290

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L+  L       +A  ++N M + G    +  F +LI+ + ++G++E C    
Sbjct: 291 DLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFM 350

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
               K+G   DV  Y ++I      G +++A  +   + E G  P    Y  +I+G    
Sbjct: 351 DETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMA 410

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A     EM+ +G  PN  VY+ L+      G+ +EA   + +M E G
Sbjct: 411 GKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 462



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 4/260 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+    E   +     LI  MI+ G+     T+ +L+     +G  R+  E  Q + 
Sbjct: 155 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVE--QFIK 212

Query: 115 DKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            K FN  P     + ++  LL     +    +  +M++ GF  D+ T+N ++    + G+
Sbjct: 213 SKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGK 272

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            +    +   + K G   D+ TY IL+  ++       A  LL+++ E G +P    +  
Sbjct: 273 TDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTT 332

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G+ R G+ +    F  E    G  P+   YT++IT    GG   +A     EMTE G
Sbjct: 333 LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 392

Query: 293 LTPISRCFDLVTDGLKNCGK 312
             P    ++ +  G    GK
Sbjct: 393 QLPNVFTYNSMIRGFCMAGK 412



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 105/243 (43%), Gaps = 6/243 (2%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++ F      Y +L+  +   G+ +     + EM   G+       +LL+     AG   
Sbjct: 145 QENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGL-- 202

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A+ +V + IK     +     ++N+++ ++    + +    +Y  + + G   DV TY 
Sbjct: 203 -ARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYN 261

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I++ A  + G  D  +RLL  +V+DG  P    Y  ++  +    +   A    + M+  
Sbjct: 262 IVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREV 321

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P    +T LI    R G+      ++ E  ++G TP   C+ ++  G  + G+ + A
Sbjct: 322 GVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKA 381

Query: 317 EKI 319
           E++
Sbjct: 382 EEM 384



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +I+   + G ++      ++     C   V+ Y  ++           A  + + M 
Sbjct: 330 FTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 389

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG +P+  TY  ++  +C +GK +EA   L+EM  +G NP       LV  L NAG + 
Sbjct: 390 EKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVL 449

Query: 140 SAKQMVNKMIKQGFVLDL 157
            A ++V  M+++G  + L
Sbjct: 450 EAHEVVKDMVEKGHYVHL 467


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 133/277 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+   K   V+ A+++F+   A      +  YNSL+  LC    +  A A++  M
Sbjct: 47  TYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEM 106

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +    +P+  T+++L+N +C  G + EA+  L+ M++ G  P V     L+ G      +
Sbjct: 107 MSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEV 166

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + MI +G   D+ ++N LI   CK+  +    +++  +   GL  D+ +Y  L
Sbjct: 167 FEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 226

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G + EA  L  N++ +G+ P    Y+ ++ G  ++G    AF  F  M+    
Sbjct: 227 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 286

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN  +Y +LI    +     EA     E+   GL P
Sbjct: 287 KPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 323



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 126/276 (45%), Gaps = 2/276 (0%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q  V  Y +++  LC++     A  L ++M   G  PD  TY+ ++++ C   ++ EA +
Sbjct: 7   QPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALD 66

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
               M  KG +P +   + L+QGL N      A  M+N+M+    + ++ TF+ LI   C
Sbjct: 67  IFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFC 126

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G V     +  ++ ++G+  +V TY  L+   S    + EA +L   ++  G KP   
Sbjct: 127 KEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVF 186

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  +I G  +  +  +A   F+EM  +G  P+   Y  LI    + GR  EA +    M
Sbjct: 187 SYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 246

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
              G  P    + ++ DG   C +  LA+   L   
Sbjct: 247 LTNGNLPDLCTYSILLDGF--CKQGYLAKAFRLFRA 280



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 133/306 (43%), Gaps = 2/306 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + II    K G    A  +F K     CQ  V+ Y++++ +LC+ +  + A  +   
Sbjct: 11  HTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSY 70

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG  P+  TY  L+   C+  + REA   L EM      P +    LL+      G 
Sbjct: 71  MKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 130

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A+ ++  M + G   ++ T++SL+       EV    +++  +   G   DV +Y I
Sbjct: 131 VFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNI 190

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    KA  I EA +L + ++  G  P    Y  +I G+ + G+  +A   F  M   G
Sbjct: 191 LINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 250

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           + P+   Y++L+    + G   +A      M    L P    ++++ D +  C   +L E
Sbjct: 251 NLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM--CKSRNLKE 308

Query: 318 KIELLE 323
             +L  
Sbjct: 309 ARKLFS 314



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 4/242 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G+ PD  TY  ++N  C  G+   A    ++M + G  P V     ++  L     
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A  + + M  +G   ++ T+NSLI+ +C          M   +  L +  ++ T+ +
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G + EA  +L  + E G +P    Y+ ++ G   + +  +A   F  M  KG
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK----H 313
             P+   Y +LI    +  R  EA     EM   GLTP    ++ + DGL   G+    H
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAH 240

Query: 314 DL 315
           DL
Sbjct: 241 DL 242



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 2/188 (1%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + V P   T S ++  +     V  A ++F+      C+  V  YN L+   C+ K    
Sbjct: 144 MGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGE 203

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI +G  PD  +Y  L++  C  G++REA +  + M   G  P +    +L+ 
Sbjct: 204 AKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLD 263

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    GYL  A ++   M       ++  +N LI+ +CKS  ++   +++  +   GL  
Sbjct: 264 GFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQP 323

Query: 191 DVSTYKIL 198
           ++  +K+ 
Sbjct: 324 NMKHWKLF 331


>gi|8778500|gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M + I+ M       +  T +L+I   G+ GL  + VE F K   FN +     YN++L 
Sbjct: 248 MCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILH 307

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  VK +     +  +M+  GF PD  TY I++ A    GK       L EM   GF+P
Sbjct: 308 SLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSP 367

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L+  L       +A  ++N M + G    +  F +LI+ + ++G++E C    
Sbjct: 368 DLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFM 427

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
               K+G   DV  Y ++I      G +++A  +   + E G  P    Y  +I+G    
Sbjct: 428 DETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMA 487

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A     EM+ +G  PN  VY+ L+      G+ +EA   + +M E G
Sbjct: 488 GKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVLEAHEVVKDMVEKG 539



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 112/260 (43%), Gaps = 4/260 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+    E   +     LI  MI+ G+     T+ +L+     +G  R+  E  Q + 
Sbjct: 232 YHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVE--QFIK 289

Query: 115 DKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            K FN  P     + ++  LL     +    +  +M++ GF  D+ T+N ++    + G+
Sbjct: 290 SKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYNIVMFANFRLGK 349

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            +    +   + K G   D+ TY IL+  ++       A  LL+++ E G +P    +  
Sbjct: 350 TDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTT 409

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G+ R G+ +    F  E    G  P+   YT++IT    GG   +A     EMTE G
Sbjct: 410 LIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKG 469

Query: 293 LTPISRCFDLVTDGLKNCGK 312
             P    ++ +  G    GK
Sbjct: 470 QLPNVFTYNSMIRGFCMAGK 489



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 105/243 (43%), Gaps = 6/243 (2%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++ F      Y +L+  +   G+ +     + EM   G+       +LL+     AG   
Sbjct: 222 QENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGL-- 279

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A+ +V + IK     +     ++N+++ ++    + +    +Y  + + G   DV TY 
Sbjct: 280 -ARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFTPDVLTYN 338

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I++ A  + G  D  +RLL  +V+DG  P    Y  ++  +    +   A    + M+  
Sbjct: 339 IVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREV 398

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P    +T LI    R G+      ++ E  ++G TP   C+ ++  G  + G+ + A
Sbjct: 399 GVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKA 458

Query: 317 EKI 319
           E++
Sbjct: 459 EEM 461



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +I+   + G ++      ++     C   V+ Y  ++           A  + + M 
Sbjct: 407 FTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 466

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG +P+  TY  ++  +C +GK +EA   L+EM  +G NP       LV  L NAG + 
Sbjct: 467 EKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNLKNAGKVL 526

Query: 140 SAKQMVNKMIKQGFVLDL 157
            A ++V  M+++G  + L
Sbjct: 527 EAHEVVKDMVEKGHYVHL 544


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 128/296 (43%), Gaps = 2/296 (0%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L   P  +S   II  +   G ++ A  + +       +     Y SL+  +C+      
Sbjct: 278 LGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEE 337

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L  +M+  G VP+  TY  L++ +C+ G +  A  +  EM  KG  P V   +LLV 
Sbjct: 338 ASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVH 397

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G +  A  M+ +M K+G + D  T+N LI    + G  +   +++  +   G+  
Sbjct: 398 ALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEP 457

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
              TY  LI  +S+   + EA  L   +++ G  P   ++  ++ G    G  + AF   
Sbjct: 458 THVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLL 517

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  K  PP+   +  L+    R G+  EA   L EM   G+ P    ++ +  G
Sbjct: 518 KEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISG 573



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 142/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M+   +     T   +I    K G ++ A  +F+K          + YN+L+   
Sbjct: 305 RILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGY 364

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A++    M++KG +P   TY +LV+A    G+M EA + ++EM  KG  P  
Sbjct: 365 CNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDA 424

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L+ G    G  + A  + N+M+ +G      T+ SLI  + +   ++   +++  
Sbjct: 425 ITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEK 484

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  DV  +  ++      G ++ AF LL  +      P    +  +++G  R G+
Sbjct: 485 ILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGK 544

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     EMK +G  P+   Y  LI+  GR G   +A     EM  +G  P    ++ 
Sbjct: 545 VEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNA 604

Query: 303 VTDGLKNCGKHDLAEKI 319
           +   L    + DLAE++
Sbjct: 605 LIKCLCKNQEGDLAEEL 621



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 3/329 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K   +MK   +    +T + ++  F K   ++ A  ++ +         V  +N ++  
Sbjct: 199 FKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNV 258

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A   I  M   GF P+  +Y  +++ + S G +  A+  L  M  KG  P 
Sbjct: 259 LCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPD 318

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G+   G LE A  + +KM++ G V +  T+N+LI+  C  G++E       
Sbjct: 319 SYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRD 378

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+   VSTY +L+ A+   G + EA  ++  + + G  P    Y  +I G  R G
Sbjct: 379 EMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCG 438

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
               AF   +EM  KG  P    YT LI +  R  R  EA +   ++ + G++P    F+
Sbjct: 439 NAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFN 498

Query: 302 LVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
            + DG  +C   ++     LL E+  +SV
Sbjct: 499 AMVDG--HCANGNVERAFMLLKEMDRKSV 525



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 132/311 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     M    +S +  T ++++    K G +  A E          +  V+ YN+++  
Sbjct: 234 WVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHG 293

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                   GA  ++  M  KG  PD  TY  L++  C  G++ EA     +M + G  P 
Sbjct: 294 YSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPN 353

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ G  N G LE A    ++M+K+G +  + T+N L+  +   G +    +M  
Sbjct: 354 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+  D  TY ILI   S+ G   +AF L + ++  G +P    Y  +I  + RR 
Sbjct: 414 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRN 473

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A   F ++  +G  P+  ++  ++      G    A   L EM    + P    F+
Sbjct: 474 RMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFN 533

Query: 302 LVTDGLKNCGK 312
            +  G    GK
Sbjct: 534 TLMQGRCREGK 544



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 113/258 (43%), Gaps = 16/258 (6%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+E  K G++ +A+                 YN L+           A+ L   M+ KG
Sbjct: 411 MIKEMRKKGIIPDAIT----------------YNILINGYSRCGNAKKAFDLHNEMLSKG 454

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY  L+       +M+EA +  +++ D+G +P V   + +V G    G +E A 
Sbjct: 455 IEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAF 514

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ +M ++    D  TFN+L++  C+ G+VE    +   + + G+  D  +Y  LI   
Sbjct: 515 MLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGY 574

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G I +AFR+   ++  G  P    Y  +IK + +  + D A     EM  KG  P+ 
Sbjct: 575 GRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD 634

Query: 263 PVYTMLITMCGRGGRFVE 280
             Y  LI   G     VE
Sbjct: 635 STYLSLIEGMGNVDTLVE 652



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P  +S   +I  +G+ G + +A  V ++  +      +L YN+L+  LC+ +    A 
Sbjct: 560 IKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAE 619

Query: 73  ALIRRMIRKGFVPDKRTYAILV 94
            L++ M+ KG  PD  TY  L+
Sbjct: 620 ELLKEMVNKGISPDDSTYLSLI 641


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 10/320 (3%)

Query: 6   ELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAF-NCQQCVLLYNSLLF 60
           EL+  Y   + SP    +I++ + + GL  NA+ VF+   KC    + + C    NSLL 
Sbjct: 110 ELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSC----NSLLN 165

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +    H A+ + ++MIR G VPD    +I+VNA+C  GK+ EA  F+++M + G  P
Sbjct: 166 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 225

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+ G ++ G +E+AK ++  M ++G   ++ T+  LI+  CK  +++   ++ 
Sbjct: 226 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 285

Query: 181 YSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
             +  +  L  D   Y +LI    + G ID+A RLL  ++  G K    +   +I G  +
Sbjct: 286 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 345

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           RG+  +A    + M      P+   Y  L+    R G   EA N   +M + G+ P    
Sbjct: 346 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 405

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ +  GL   G  D A +I
Sbjct: 406 YNTLLKGLCRVGAFDDALQI 425



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 1/301 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +S+++  F K G VD A     K      +  ++ Y+SL+     +     A  +++ M 
Sbjct: 195 VSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 254

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAGYL 138
            KG   +  TY +L+  +C   KM EA++ L+ M ++    P  R   +L+ G    G +
Sbjct: 255 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++++M++ G   +L   NSLI   CK GE+     +   +    L  D  +Y  L
Sbjct: 315 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G   EAF L   ++++G +P    Y  ++KG+ R G FDDA   +  M  +G 
Sbjct: 375 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 434

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+    +   F  A+    ++   G T     F+ +  GL   GK   AE+
Sbjct: 435 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 494

Query: 319 I 319
           I
Sbjct: 495 I 495



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +   ++I+ + + G +D+AV + ++      +  + + NSL+   C+    H A  +I R
Sbjct: 299 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 358

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+     PD  +Y  L++ +C  G   EA     +M  +G  P V   + L++GL   G 
Sbjct: 359 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 418

Query: 138 LESAKQMVNKMIKQGFVLD-------------LE----------------------TFNS 162
            + A Q+ + M+K+G   D             +E                      TFN+
Sbjct: 419 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 478

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I  +CK G++    E++  +  LG   D  TY+ LI    KA  + +AF++   +  + 
Sbjct: 479 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 538

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P   +Y  +I G+F+  +  +     +EM I+G  PN   Y  LI    + G   +A 
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 598

Query: 283 NYLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLA 316
           +   EMTE GL+  I  C  +V+ GL   G+ D A
Sbjct: 599 SSYFEMTENGLSANIIICSTMVS-GLYRLGRIDEA 632



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 139/301 (46%), Gaps = 3/301 (0%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K  NL V P   T   +I  +   G V+ A  V    +     + V+ Y  L+   C+  
Sbjct: 217 KMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQC 276

Query: 67  LFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               A  ++R M  +   VPD+R Y +L++ +C +GK+ +A   L EM   G    +   
Sbjct: 277 KMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFIC 336

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G +  A+ ++ +M+      D  ++N+L++  C+ G       +   + +
Sbjct: 337 NSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQ 396

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+   V TY  L+  + + G  D+A ++ H +++ G  P    Y+ ++ G+F+   F+ 
Sbjct: 397 EGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEG 456

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   + ++  +G   +R  +  +I+   + G+ VEA     +M ++G +P    +  + D
Sbjct: 457 ASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLID 516

Query: 306 G 306
           G
Sbjct: 517 G 517



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 130/314 (41%), Gaps = 5/314 (1%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K  +L  SP   T   +I+ + K   V  A +V            + +YNSL+  L + +
Sbjct: 498 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 557

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
                  L+  M  +G  P+  TY  L++ WC  G + +A     EM++ G +  +    
Sbjct: 558 RLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICS 617

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            +V GL   G ++ A  ++ KM+  GF  D E F   +++  +   ++   +     CK 
Sbjct: 618 TMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF---LKSDIRYAAIQKIADSLDESCKT 674

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            L  +   Y I I  + K G +D+A R    L   G  P    Y  +I G    G  D+A
Sbjct: 675 FLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEA 734

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           F    EM  +G  PN   Y  LI    +      A     ++ + GL P    ++ + DG
Sbjct: 735 FRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDG 794

Query: 307 LKNCGKHDLAEKIE 320
               G  D A K++
Sbjct: 795 YCKIGNMDAAFKLK 808



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M  +NL     + + +++ + + G    A  + +K      +  VL YN+LL  LC 
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V  F  A  +   M+++G  PD+  Y+ L++          A    +++  +GF      
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 475

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL   G +  A+++ +KM   G   D  T+ +LI+  CK+  V    ++  ++ 
Sbjct: 476 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 535

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +   +  Y  LI  + K+  + E   LL  +   G  P    Y  +I G  + G  D
Sbjct: 536 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 595

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            AF  + EM   G   N  + + +++   R GR  EA   + +M + G  P   CF
Sbjct: 596 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 651



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 111/239 (46%), Gaps = 32/239 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I+ + K G++D A   + + T       +++ ++++  L  +     A  L+++M
Sbjct: 580 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 639

Query: 79  IRKGFVPDKR--------------------------------TYAILVNAWCSSGKMREA 106
           +  GF PD                                   Y I +   C +GK+ +A
Sbjct: 640 VDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDA 699

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           + F   +S KGF P       L+ G   AG ++ A ++ ++M+++G V ++ T+N+LI  
Sbjct: 700 RRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALING 759

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +CKS  V+    +++ + + GL  +V TY  LI    K G +D AF+L   ++E+G  P
Sbjct: 760 LCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISP 818



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 144/352 (40%), Gaps = 44/352 (12%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-----YNSLL 59
           ++ M    +S +  T +L+I+ + K   +D A +V         ++  L+     Y  L+
Sbjct: 250 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ----EEAALVPDERAYGVLI 305

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C       A  L+  M+R G   +      L+N +C  G++ EA+  +  M D    
Sbjct: 306 DGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLK 365

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     + L+ G    G+   A  + +KM+++G    + T+N+L++ +C+ G  +  +++
Sbjct: 366 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 425

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ + K G+  D   Y  L+  + K    + A  L  +++  G       +  +I G+ +
Sbjct: 426 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 485

Query: 240 RGQ-------FD------------------DAFCFFSEM----KIKGHPPNRPV------ 264
            G+       FD                  D +C  S +    K+KG     P+      
Sbjct: 486 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM 545

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           Y  LI+   +  R VE  + L EM   GLTP    +  + DG    G  D A
Sbjct: 546 YNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 597


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 144 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 203

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +   F +LI+  CK+G V
Sbjct: 204 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRV 263

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +   L+  +   G KP    Y  +
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTL 323

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF    +M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGL 383

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +R + ++ +    C K D+ +  +LL+
Sbjct: 384 KPDARTYTMIINEF--CKKGDVWKGSKLLK 411



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 3/246 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 70  SDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 129

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 130 YKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 189

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN  +
Sbjct: 190 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVI 249

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-E 323
           +T LI    + GR   A     +M    L P    ++ +  GL  C K DL +   L+ E
Sbjct: 250 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGDLKQVHHLIDE 307

Query: 324 VSLRSV 329
           +S++ +
Sbjct: 308 MSMKGL 313



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 118/264 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+   +  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 SKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+    ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          +++ +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++    + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D A E   +    N +   + Y +L+  LC+
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQ 364

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  PD RTY +++N +C  G + +  + L+EM   G  P V  
Sbjct: 365 EGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 424

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 425 YNVLMNG 431


>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
 gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
          Length = 506

 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 151/320 (47%), Gaps = 5/320 (1%)

Query: 4   TIELMKPY---NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           TIEL+K       ++S Q L+  +    K G VD A+E F +   +F+ +  V  Y+ L+
Sbjct: 95  TIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFFREAKNSFSLRASVSTYSILV 154

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            AL   K  +  Y ++R M   G   DK TY++++++ C SG + +A+  ++ M  +   
Sbjct: 155 AALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCV 214

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  R  D +++ L   G ++ A + + K         + T+NSL+    K+  ++  +++
Sbjct: 215 PDARIYDPVIEELSKTGRVDEAVE-IAKEADAKHCTSVVTYNSLVLGFLKARRLKRGIKV 273

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + + G   D+ TY IL   +S+ G+   A++LL  + +DG  P    +  +I G+  
Sbjct: 274 FTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVE 333

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             ++  A     EM  +G  PN   YT+L+    R  R  E       + +  L P    
Sbjct: 334 DNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADECVELFQRLLDRKLAPNVYT 393

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ V   L   G+ D A ++
Sbjct: 394 YNTVMSALCKAGRLDQAHRL 413



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 125/289 (43%), Gaps = 2/289 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M   N     +    +IEE  K G VD AVE+  +  A +C   V+ YNSL+    +
Sbjct: 205 VERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTS-VVTYNSLVLGFLK 263

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +       +  RM R G  PD  TY IL       G  R A + L  M+  G  P    
Sbjct: 264 ARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVT 323

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL+       A  ++ +M+ +G   +  T+  L++ + ++   + CVE++  + 
Sbjct: 324 FNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADECVELFQRLL 383

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLH-NLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              L  +V TY  ++ A+ KAG +D+A RL    L  D   P    Y  +I G+  + + 
Sbjct: 384 DRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMEL 443

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           + A      M  +   P+   Y  ++    + GR  EA   L  M   G
Sbjct: 444 ERAVLLLDAMAKRDCAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAG 492



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 136/319 (42%), Gaps = 4/319 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E    ++L  S  T S+++         ++  E+  +  +   +     Y+ ++ +LC+ 
Sbjct: 136 EAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLCKS 195

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A  L+ RMI +  VPD R Y  ++     +G++ EA E  +E +D      V   
Sbjct: 196 GMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKE-ADAKHCTSVVTY 254

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + LV G L A  L+   ++  +M + G   D+ T+N L E + + G   F  ++   + +
Sbjct: 255 NSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQ 314

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D  T+  LI  + +      A  L+  +V  G  P    Y  ++K + R  + D+
Sbjct: 315 DGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADE 374

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR-CFDLVT 304
               F  +  +   PN   Y  +++   + GR  +A      M     TP +   +  + 
Sbjct: 375 CVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALI 434

Query: 305 DGLKNCGKHDLAEKIELLE 323
            GL  C K +L   + LL+
Sbjct: 435 HGL--CLKMELERAVLLLD 451



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 1/207 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++ E   +HGL   A ++  +          + +NSL+  L E   +H A  LI+ M
Sbjct: 288 TYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEM 347

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY IL+     + +  E  E  Q + D+   P V   + ++  L  AG L
Sbjct: 348 VSRGCDPNAITYTILLKWLARNARADECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRL 407

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + A ++   M+       +  T+ +LI  +C   E+E  V +  ++ K     DV+ Y  
Sbjct: 408 DQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMAKRDCAPDVACYGT 467

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           ++ A  K G IDEAF LL  +   G K
Sbjct: 468 IVAAFCKQGRIDEAFELLERMPFAGDK 494



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/307 (21%), Positives = 124/307 (40%), Gaps = 41/307 (13%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWC------------ 98
           V  YN+++ ALC+      A+ L   M+      P+  TY  L++  C            
Sbjct: 4   VYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTPPNAITYRALIHGLCLKMELERAVLLL 63

Query: 99  ------------------------SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
                                     G +R   E L++M++ G    ++  +  ++GL  
Sbjct: 64  DAVYFKLSWLVPATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCK 123

Query: 135 AGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           AG ++ A +   +  K  F L   + T++ L+  +  +       E+   +  +GL AD 
Sbjct: 124 AGNVDGALEFFREA-KNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEADK 182

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY ++I ++ K+GM+D+A  L+  ++     P   +Y P+I+ + + G+ D+A     E
Sbjct: 183 DTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKE 242

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              K H  +   Y  L+    +  R          M   G +P    ++++ +GL   G 
Sbjct: 243 ADAK-HCTSVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGL 301

Query: 313 HDLAEKI 319
              A K+
Sbjct: 302 WRFAYKL 308



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 38/235 (16%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQG------------ 131
           P+  TY  +++A C +G++ +A      M      PP       L+ G            
Sbjct: 2   PNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTPPNAITYRALIHGLCLKMELERAVL 61

Query: 132 LLNA------------------------GYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           LL+A                        G L +  +++  M + G  L ++  N  +  +
Sbjct: 62  LLDAVYFKLSWLVPATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGL 121

Query: 168 CKSGEVEFCVEMYYSV-CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           CK+G V+  +E +        L A VSTY IL+ A++ A   ++ + +L  +   G +  
Sbjct: 122 CKAGNVDGALEFFREAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEAD 181

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
              Y+ II  + + G  D A      M  +   P+  +Y  +I    + GR  EA
Sbjct: 182 KDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEA 236


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + MK   L  +  T++++I+   K   +D A  +F       C      + SL+  L
Sbjct: 433 KVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGL 492

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   AY+L  +M+    +P+   Y  L+  +   G+  +  +  +EM  +G +P +
Sbjct: 493 GRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDL 552

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +  +  +  AG +E  + +  ++  QG V D+ +++ LI  + K+G      +++Y 
Sbjct: 553 MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYE 612

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  DV  Y  +I    K+G +D+A++LL  +   G +P    Y  ++ G+ +  +
Sbjct: 613 MKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDR 672

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A+  F E K  G   N  +Y+ LI   G+ GR  EA   L E+ + GLTP S  ++ 
Sbjct: 673 LDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNC 732

Query: 303 VTDGLKNCGKHDLAE 317
           + D L    + D A+
Sbjct: 733 LLDALVKAEEIDEAQ 747



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 35/325 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F K G  ++  +++ +     C   ++L NS +  + +        AL   +  +G
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VPD R+Y+IL++    +G  RE  +   EM ++G +  V   + ++ G   +G ++ A 
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAY 642

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q++ +M  +G    + T+ S+++ + K   ++    ++     +G+  +V  Y  LI   
Sbjct: 643 QLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGF 702

Query: 203 SKAGMIDEAFRLLHNLVEDGHKP------------------------FPSL--------- 229
            K G IDEA+ +L  L++ G  P                        F ++         
Sbjct: 703 GKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNA 762

Query: 230 --YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I G+    +F+ AF F+ EM+ +G  PN   YT +I    + G  +EA      
Sbjct: 763 MTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDR 822

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGK 312
               G  P S C++ + +GL +  K
Sbjct: 823 FKASGGVPDSACYNAMIEGLSSANK 847



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 36/353 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    MK   L     T + +I    K   +D AVE+F +        CV  YN+++  
Sbjct: 293 WKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMG 352

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R  RKG +P    Y  ++      GK+ EA     EM      P 
Sbjct: 353 YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA-APN 411

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++L+  L  AG LE+A ++ + M + G   ++ T N +I+ +CK+ +++    ++ 
Sbjct: 412 LTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFL 471

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV---------------------- 219
            +       D  T+  LI  + + G +D+A+ L   ++                      
Sbjct: 472 GLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCG 531

Query: 220 --EDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
             EDGHK           P   L    +  +F+ G+ +     F E+K +G  P+   Y+
Sbjct: 532 RKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYS 591

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +LI    + G   E      EM E GL      ++ V DG    GK D A ++
Sbjct: 592 ILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 34/322 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+      +    + ++  F + G +D A+ + ++  + +    ++LYN  +    +V  
Sbjct: 229 MQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGK 288

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+     M  +G VPD  TY  L+   C + ++ EA E  +E+      P V   + 
Sbjct: 289 VDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNT 348

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV--------------------------------- 154
           ++ G  +AG  + A  ++ +  ++G +                                 
Sbjct: 349 MIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDA 408

Query: 155 -LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +L T+N LI+ +CK+GE+E  +++  ++ + GL  ++ T  I+I  + KA  +DEA  
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           +   L      P    +  +I G+ RRG+ DDA+  + +M      PN  VYT LI    
Sbjct: 469 IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFF 528

Query: 274 RGGRFVEAANYLVEMTEMGLTP 295
           + GR  +      EM   G +P
Sbjct: 529 KCGRKEDGHKIYKEMVHRGCSP 550



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 115/252 (45%), Gaps = 5/252 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ +I  M +  F P    Y  L+ A  ++ +         +M + G+   V     LV+
Sbjct: 187 AFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVR 246

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G +++A  ++++M    F  DL  +N  I+   K G+V+   + ++ +   GL  
Sbjct: 247 VFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVP 306

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAFC 248
           D  TY  LI  + KA  +DEA  L   L  D ++  P +YA   +I G    G+FD+A+ 
Sbjct: 307 DDVTYTTLIGVLCKARRLDEAVELFEEL--DLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
                K KG  P+   Y  ++T  GR G+  EA     EM +    P    ++++ D L 
Sbjct: 365 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQ-DAAPNLTTYNILIDMLC 423

Query: 309 NCGKHDLAEKIE 320
             G+ + A K++
Sbjct: 424 KAGELEAALKVQ 435



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 1/314 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M      +S      ++  F K   +  A  V      F  +     Y +L+ AL
Sbjct: 154 QILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGAL 213

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                      L  +M   G+  +   +  LV  +   G++  A   L EM    F   +
Sbjct: 214 SAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADL 273

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++ +      G ++ A +  ++M  QG V D  T+ +LI  +CK+  ++  VE++  
Sbjct: 274 VLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEE 333

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +        V  Y  +I     AG  DEA+ LL      G  P    Y  I+  + R+G+
Sbjct: 334 LDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGK 393

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     EM+ +   PN   Y +LI M  + G    A      M E GL P     ++
Sbjct: 394 VEEALRIHDEMR-QDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNI 452

Query: 303 VTDGLKNCGKHDLA 316
           + D L    K D A
Sbjct: 453 MIDRLCKAQKLDEA 466



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 3/324 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K   L    ++ S++I    K G      ++F +         VL YN+++   C+ 
Sbjct: 576 EEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKS 635

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY L+  M  KG  P   TY  +V+      ++ EA    +E    G +  V   
Sbjct: 636 GKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIY 695

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +++++G   +  T+N L++ + K+ E++     + ++  
Sbjct: 696 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKN 755

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           L    +  TY I+I  +      ++AF     + + G KP    Y  +I G+ + G   +
Sbjct: 756 LKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVME 815

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F   K  G  P+   Y  +I       + ++A     E    G    S+   ++ D
Sbjct: 816 ARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLD 875

Query: 306 GLKNCGKHDLAEKIELLEVSLRSV 329
            L    K D  E+  ++   LR +
Sbjct: 876 ALH---KADCLEQAAIVGAVLREM 896



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 121/291 (41%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K    MK   L +     + +I+ F K G VD A ++  +      Q  V+ Y S++  
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDG 666

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L ++     AY L       G   +   Y+ L++ +   G++ EA   L+E+  KG  P 
Sbjct: 667 LAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPN 726

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+  L+ A  ++ A+     M       +  T++ +I  +C   +       + 
Sbjct: 727 SYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQ 786

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K GL  +  TY  +I  ++KAG + EA  L       G  P  + Y  +I+G+    
Sbjct: 787 EMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSAN 846

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +  DA+  F E ++KG   N     +L+    +     +AA     + EM 
Sbjct: 847 KAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAAIVGAVLREMA 897



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 107/270 (39%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
            C  +YN+ L  +   +       ++  M   GF         LV ++  S K++EA   
Sbjct: 131 HCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGV 190

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           ++ M    F P       L+  L  A   +    + ++M + G+  ++  F +L+    +
Sbjct: 191 IEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAR 250

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G ++  + +   +      AD+  Y + I    K G +D A++  H +   G  P    
Sbjct: 251 EGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVT 310

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I  + +  + D+A   F E+ +    P    Y  +I   G  G+F EA + L    
Sbjct: 311 YTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQK 370

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             G  P    ++ +   L   GK + A +I
Sbjct: 371 RKGCIPSVIAYNCILTCLGRKGKVEEALRI 400


>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 11/323 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y ++    T +++I  F  + +VD     F + + F C   V+ YN+L+  LC  
Sbjct: 225 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 284

Query: 66  KLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A+ +++ M++K     P+  TY  L+  +C    M EA   L EM  +G  P   
Sbjct: 285 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 344

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L+QGL  A  L+  K+++  M+   GF+ D  T N+LI+  C  G++E    ++  
Sbjct: 345 TYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEK 404

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-------GHKPFPSLYAPIIK 235
           + +L +  D +TY +L+ ++ + G    A      L E        G KP  + Y P+ +
Sbjct: 405 MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFE 464

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A   F ++  +G   + P Y  LI    R G      + LV M      P
Sbjct: 465 YLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVP 523

Query: 296 ISRCFDLVTDGLKNCGKHDLAEK 318
            +  + L+ DGL   G   LA K
Sbjct: 524 DAETYGLMIDGLLKKGDPVLAHK 546



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 13/309 (4%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK- 81
           +I  +G  GL   +++VF           V+ +NSLL  + +      A  L   M+   
Sbjct: 171 LIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTY 230

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  T+ IL+  +C +  + E   F +EMS    +P V   + LV GL  AG ++ A
Sbjct: 231 GVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIA 290

Query: 142 KQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
             +V  M+K+   L  ++ T+ +LI   C   ++   + +   +   GL  +  TY  LI
Sbjct: 291 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 350

Query: 200 PAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             + +A  +D+   +L  +V D G  P       +IK     G+ ++AF  F +M     
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRV 410

Query: 259 PPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTE-------MGLTPISRCFDLVTDGLKNC 310
            P+   Y++L+ ++C RG  F  A  +  E+ E       +G  P+   ++ + + L + 
Sbjct: 411 QPDSATYSVLVRSLCQRGD-FRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN 469

Query: 311 GKHDLAEKI 319
           GK   AE++
Sbjct: 470 GKTKKAERV 478



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+L+ A C +     A+++  +M      PD  TY++LV + C  G  R A+EF  E+++
Sbjct: 383 NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAE 442

Query: 116 K-------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           K       G  P V   + + + L + G  + A+++  +++K+G   D  ++ +LI   C
Sbjct: 443 KEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHC 501

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G  E   ++   + +     D  TY ++I  + K G    A + L  +++  H P  +
Sbjct: 502 REGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTA 561

Query: 229 LYAPIIKGMFRRG 241
           ++  I+  +  +G
Sbjct: 562 IFHSILAALVEKG 574



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 4/172 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+   C        + L+  M+R+ FVPD  TY ++++     G    A + L++M 
Sbjct: 493 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 115 DKGFNPPVRGRDLLVQGLLNAG-YLESA---KQMVNKMIKQGFVLDLETFNSLIETICKS 170
                P       ++  L+  G   ESA   K M+ + I+Q   L   T   L+  +C+S
Sbjct: 553 KSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTMEELVSFLCQS 612

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            ++    +M     +     D+     +I  + KA  + EAF L + LVE G
Sbjct: 613 RKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELVEKG 664


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 11/323 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y ++    T +++I  F  + +VD     F + + F C   V+ YN+L+  LC  
Sbjct: 225 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 284

Query: 66  KLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A+ +++ M++K     P+  TY  L+  +C    M EA   L EM  +G  P   
Sbjct: 285 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 344

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L+QGL  A  L+  K+++  M+   GF+ D  T N+LI+  C  G++E    ++  
Sbjct: 345 TYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEK 404

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-------GHKPFPSLYAPIIK 235
           + +L +  D +TY +L+ ++ + G    A      L E        G KP  + Y P+ +
Sbjct: 405 MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFE 464

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A   F ++  +G   + P Y  LI    R G      + LV M      P
Sbjct: 465 YLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVP 523

Query: 296 ISRCFDLVTDGLKNCGKHDLAEK 318
            +  + L+ DGL   G   LA K
Sbjct: 524 DAETYGLMIDGLLKKGDPVLAHK 546



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 141/309 (45%), Gaps = 13/309 (4%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK- 81
           +I  +G  GL   +++VF           V+ +NSLL  + +      A  L   M+   
Sbjct: 171 LIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTY 230

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  T+ IL+  +C +  + E   F +EMS    +P V   + LV GL  AG ++ A
Sbjct: 231 GVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIA 290

Query: 142 KQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
             +V  M+K+   L  ++ T+ +LI   C   ++   + +   +   GL  +  TY  LI
Sbjct: 291 HNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLI 350

Query: 200 PAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             + +A  +D+   +L  +V D G  P       +IK     G+ ++AF  F +M     
Sbjct: 351 QGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRV 410

Query: 259 PPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTE-------MGLTPISRCFDLVTDGLKNC 310
            P+   Y++L+ ++C RG  F  A  +  E+ E       +G  P+   ++ + + L + 
Sbjct: 411 QPDSATYSVLVRSLCQRGD-FRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSN 469

Query: 311 GKHDLAEKI 319
           GK   AE++
Sbjct: 470 GKTKKAERV 478



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 93/193 (48%), Gaps = 8/193 (4%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+L+ A C +     A+++  +M      PD  TY++LV + C  G  R A+EF  E+++
Sbjct: 383 NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAE 442

Query: 116 K-------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           K       G  P V   + + + L + G  + A+++  +++K+G   D  ++ +LI   C
Sbjct: 443 KEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHC 501

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G  E   ++   + +     D  TY ++I  + K G    A + L  +++  H P  +
Sbjct: 502 REGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTA 561

Query: 229 LYAPIIKGMFRRG 241
           ++  I+  +  +G
Sbjct: 562 IFHSILAALVEKG 574



 Score = 44.3 bits (103), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 32/200 (16%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+   C        + L+  M+R+ FVPD  TY ++++     G    A + L++M 
Sbjct: 493 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 552

Query: 115 DKGFNPPVRGRDLLVQGLLNAG-YLESA---KQMVNKMIKQGFVLDLET----------- 159
                P       ++  L+  G   ESA   K M+ + I+Q   L   T           
Sbjct: 553 KSSHLPTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQD 612

Query: 160 -----------------FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
                               L+  +C+S ++    +M     +     D+     +I  +
Sbjct: 613 KAFMTIGLLYENGYLVKMEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGL 672

Query: 203 SKAGMIDEAFRLLHNLVEDG 222
            KA  + EAF L + LVE G
Sbjct: 673 CKAHKVSEAFALYYELVEKG 692


>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
          Length = 1024

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 146/323 (45%), Gaps = 11/323 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y ++    T +++I  F  + +VD     F + + F C   V+ YN+L+  LC  
Sbjct: 296 EMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRA 355

Query: 66  KLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A+ +++ M++K     P+  TY  L+  +C    M EA   L EM  +G  P   
Sbjct: 356 GKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKI 415

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L+QGL  A  L+  K+++  M+   GF+ D  T N+LI+  C  G++E    ++  
Sbjct: 416 TYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEK 475

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-------GHKPFPSLYAPIIK 235
           + +L +  D +TY +L+ ++ + G    A      L E        G KP  + Y P+ +
Sbjct: 476 MSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFE 535

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A   F ++  +G   + P Y  LI    R G      + LV M      P
Sbjct: 536 YLCSNGKTKKAERVFRQLMKRG-TQDPPSYKTLILGHCREGTPEAGFDLLVLMLRRDFVP 594

Query: 296 ISRCFDLVTDGLKNCGKHDLAEK 318
            +  + L+ DGL   G   LA K
Sbjct: 595 DAETYGLMIDGLLKKGDPVLAHK 617



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 135/296 (45%), Gaps = 13/296 (4%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILV 94
           +++VF           V+ +NSLL  + +      A  L   M+   G  PD  T+ IL+
Sbjct: 255 SIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI 314

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
             +C +  + E   F +EMS    +P V   + LV GL  AG ++ A  +V  M+K+   
Sbjct: 315 RGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPN 374

Query: 155 L--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           L  ++ T+ +LI   C   ++   + +   +   GL  +  TY  LI  + +A  +D+  
Sbjct: 375 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIK 434

Query: 213 RLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-T 270
            +L  +V D G  P       +IK     G+ ++AF  F +M      P+   Y++L+ +
Sbjct: 435 EILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRS 494

Query: 271 MCGRGGRFVEAANYLVEMTE-------MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +C RG  F  A  +  E+ E       +G  P+   ++ + + L + GK   AE++
Sbjct: 495 LCQRGD-FRRAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERV 549



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 95/203 (46%), Gaps = 10/203 (4%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
            F    C L  N+L+ A C +     A+++  +M      PD  TY++LV + C  G  R
Sbjct: 445 GFIPDTCTL--NTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFR 502

Query: 105 EAQEFLQEMSDK-------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
            A+EF  E+++K       G  P V   + + + L + G  + A+++  +++K+G   D 
Sbjct: 503 RAEEFFDELAEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRG-TQDP 561

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            ++ +LI   C+ G  E   ++   + +     D  TY ++I  + K G    A + L  
Sbjct: 562 PSYKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEK 621

Query: 218 LVEDGHKPFPSLYAPIIKGMFRR 240
           +++  H P  +++  I+  +  +
Sbjct: 622 MLKSSHLPTTAIFHSILAALVEK 644



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 33/235 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G ++ A  VF K +    Q     Y+ L+ +LC+   F  A      +
Sbjct: 452 TLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDEL 511

Query: 79  IRK-------GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             K       G  P    Y  +    CS+GK ++A+   +++  +G   P   + L++ G
Sbjct: 512 AEKEILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQDPPSYKTLIL-G 570

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC--------------- 176
               G  E+   ++  M+++ FV D ET+  +I+ + K G+                   
Sbjct: 571 HCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPT 630

Query: 177 VEMYYSVC--------KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
             +++S+         ++    D+ST+ + +  + K+G+ D+AF  +  L E+G+
Sbjct: 631 TAIFHSILAALVEKERRIRQNIDLSTHTVRL--LYKSGLQDKAFMTIGLLYENGY 683



 Score = 47.0 bits (110), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 24/189 (12%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+   C        + L+  M+R+ FVPD  TY ++++     G    A + L++M 
Sbjct: 564 YKTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKML 623

Query: 115 DKGFNPPV------------------RGRDL---LVQGLLNAGYLESAKQMVNKMIKQGF 153
                P                    +  DL    V+ L  +G  + A   +  + + G+
Sbjct: 624 KSSHLPTTAIFHSILAALVEKERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGY 683

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           ++ +E    L+  +C+S ++    +M     +     D+     +I  + KA  + EAF 
Sbjct: 684 LVKME---ELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFA 740

Query: 214 LLHNLVEDG 222
           L + LVE G
Sbjct: 741 LYYELVEKG 749


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/249 (28%), Positives = 127/249 (51%), Gaps = 4/249 (1%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           CQ  V+ Y  LL A+C+   F  A  ++  M  KG  P+  TY +++N  C  G++ +A+
Sbjct: 183 CQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAK 242

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E L  +S  GF P +     +++GL  A   +  K +  +M+ +  V +  TF+ L+   
Sbjct: 243 EILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFF 302

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C+ G VE  +++   + + G   + +   I+I A+ K G +D+A+  L+N+   G  P  
Sbjct: 303 CRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDT 362

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLV 286
             Y  +++G+ R G+++ A     EM  K  PPN   + T +  +C +G   +E A  L+
Sbjct: 363 ISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKG--LIEQAIKLI 420

Query: 287 E-MTEMGLT 294
           E M E G +
Sbjct: 421 ELMPEYGCS 429



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 156/342 (45%), Gaps = 46/342 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    + G VD+A E+ N+ +++  Q  ++ Y ++L  LC  + +     L   M
Sbjct: 224 TYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEM 283

Query: 79  IRKGFVPDKRTYAILV-----------------------------------NAWCSSGKM 103
           + K  VP++ T+ +LV                                   NA C  G++
Sbjct: 284 VDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRV 343

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A +FL  M   G NP       +++GL  AG  E AK+++ +M+++    +  TFN+ 
Sbjct: 344 DDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTF 403

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I  +C+ G +E  +++   + + G    + TY  L+      G +D A  L +NL     
Sbjct: 404 ICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNL---PC 460

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAA 282
           +P    Y  ++ G+    + D A    +EM  K  P N   + +L++  C +G  FVE A
Sbjct: 461 EPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKG--FVEEA 518

Query: 283 NYLV-EMTEMGLTPISRCFDLVTDGL-KNCGKHDLAEKIELL 322
             LV +M E G TP    F+ + DG+ K+C      E +ELL
Sbjct: 519 MELVNQMMEHGCTPNLITFNTLLDGITKDCNSE---EALELL 557



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 3/255 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IELM  Y  SV   T + ++  F   G VD+A+E+FN      C+   + Y +LL  L
Sbjct: 418 KLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNN---LPCEPNTITYTTLLTGL 474

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  +    A  L+  MI+K    +  T+ +LV+ +C  G + EA E + +M + G  P +
Sbjct: 475 CHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNL 534

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G+      E A ++++ ++ +G  LD  T++S+++ + +    E  ++M ++
Sbjct: 535 ITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHA 594

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           V  +G+   V  Y  ++ A+ K    D+A      +V +G  P  S Y  +I+G+   G 
Sbjct: 595 VQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGL 654

Query: 243 FDDAFCFFSEMKIKG 257
             +A    SE+  KG
Sbjct: 655 LKEARYVLSELYAKG 669



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A+++      + C   ++ YN+L+   C       A  L   +  +   P+  
Sbjct: 409 QKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTI 465

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C + ++  A E L EM  K         ++LV      G++E A ++VN+M
Sbjct: 466 TYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQM 525

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L TFN+L++ I K    E  +E+ + +   G+  D  TY  ++  +S+    
Sbjct: 526 MEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRT 585

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++LH + + G +P   +Y  I+  + +R + D A  FF+ M   G  PN   Y +L
Sbjct: 586 EEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIIL 645

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I      G   EA   L E+   G+
Sbjct: 646 IEGLAHEGLLKEARYVLSELYAKGV 670



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 122/247 (49%), Gaps = 2/247 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+++G  P   TY +L+ A C S    EA   L EM  KG  P +   ++++ G+   G 
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ AK+++N++   GF  D+ ++ ++++ +C +   +    ++  +       +  T+ +
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    + GM++ A ++L  + + G  P  +L   +I  + ++G+ DDA+ F + M + G
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYG 357

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   YT ++    R GR+  A   L EM      P    F+     L  C K  + +
Sbjct: 358 CNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICIL--CQKGLIEQ 415

Query: 318 KIELLEV 324
            I+L+E+
Sbjct: 416 AIKLIEL 422


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L AL +  L   A   +  M+R G  P+  TY ILV A C+ G++ EA   + +M 
Sbjct: 121 YNAVLLALSDASL-PSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMR 179

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV 173
             G  P     + LV     AG L+ A+++V+ M ++G    +L TFNS++  +CK+G +
Sbjct: 180 GAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRM 239

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   +++  + + GL  DV +Y  L+    K G + E+  +   + + G  P    +  +
Sbjct: 240 EGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + G  + A    ++M+ +G   N   +T LI    + G   +A   + EM + G+
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P   C++ + +G    G+ DLA ++
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLAREL 385



 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 23/309 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNA---VEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           M+   L ++  T + +I+ F K G +D+A   VE   KC     Q  V+ YN+L+   C+
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKC---GIQPSVVCYNALINGYCK 375

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  LIR M  K   PD  TY+ +++ +C  G +  A +  Q+M  KG  P    
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L++GL     L  A ++   M++ G   D  T+ +LI+  CK G VE  + ++  + 
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPS 228
           + G+  DV TY +LI  +SK+    EA RLL  L  +   P                F S
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + A ++KG   +G   +A   +  M  +    +  VY++LI    RGG   +A ++  +M
Sbjct: 556 VVA-LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 289 TEMGLTPIS 297
              G +P S
Sbjct: 615 LRSGFSPNS 623



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 3/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + ++  F + G +D A  V +      N +  ++ +NS++  LC+     GA  +   
Sbjct: 189 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 248

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+R+G  PD  +Y  L++ +C  G + E+     EM+ +G  P V     L+     AG 
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE A  +V +M ++G  ++  TF +LI+  CK G ++  +     + K G+   V  Y  
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G +D A  L+  +     KP    Y+ II G  + G  D AF    +M  KG
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y+ LI       R  +A      M ++G+ P    +  + DG  +C + ++ +
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG--HCKEGNVEK 486

Query: 318 KIELLEVSLR 327
            + L +  +R
Sbjct: 487 ALSLHDEMIR 496



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 5/312 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++++      G ++ AV V        C    + YN+L+ A C      GA 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++  M  +G   P+  T+  +VN  C +G+M  A++   EM  +G  P V   + L+ G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L  +  + ++M ++G V D+ TF SLI   CK+G +E  V +   + + GL  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+  LI    K G +D+A   +  + + G +P    Y  +I G  + G+ D A     
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ K   P+   Y+ +I+   + G    A     +M + G+ P +  +  +  GL  C 
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL--CE 445

Query: 312 KHDLAEKIELLE 323
           +  L +  EL E
Sbjct: 446 EKRLNDACELFE 457



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 147/311 (47%), Gaps = 5/311 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +S   ++  + K G +  ++ VF++ T       V+ + SL+ A C+      A 
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL+ +M  +G   ++ T+  L++ +C  G + +A   ++EM   G  P V   + L+ G 
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A++++ +M  +    D+ T++++I   CK G ++   ++   + K G+  D 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   +++A  L  N+++ G +P    Y  +I G  + G  + A     E
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y++LI    +  R  EA   L ++      P +  +D +   +  C K
Sbjct: 494 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDAL---MLCCSK 550

Query: 313 HDLAEKIELLE 323
            +    + LL+
Sbjct: 551 AEFKSVVALLK 561



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 7/189 (3%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+ P V   + ++  L +A  L SA++ ++ M++ G   ++ T+N L+  +C  G +E  
Sbjct: 113 GYAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIK 235
           V +   +   G   +  TY  L+ A  +AG +D A R++  + E+G+ KP    +  ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+ + A   F EM  +G  P+   Y  L++   + G   E+     EMT+ GL P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 296 ISRCFDLVT 304
                D+VT
Sbjct: 292 -----DVVT 295



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 21/274 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    +   +++A E+F        Q     Y +L+   C+      A +L   M
Sbjct: 435 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL---------- 128
           IRKG +PD  TY++L+N    S + +EA   L ++  +   P     D L          
Sbjct: 495 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFK 554

Query: 129 -----VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
                ++G    G ++ A ++   M+ + + LD   ++ LI   C+ G V   +  +  +
Sbjct: 555 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM--FRRG 241
            + G   + ++   L+  + + GM+ EA     N ++D     P   A   K +    R 
Sbjct: 615 LRSGFSPNSTSTISLVRGLFEEGMVVEA----DNAIQDLLTCCPLADAEASKALIDLNRK 670

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           +  D F    E+      P+   +  ++T+C  G
Sbjct: 671 EGMDYFQAQGEIWYSESSPSVEYWNYMMTICHFG 704


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 1/258 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+  ++  F +   V +AV + +K      +  ++ YN+++ +LC+ K  + A+   + +
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY  LVN  C+S +  +A   L +M  K   P V     L+   +  G +
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKV 276

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M++     D+ T++SL+  +C    ++   +M+  +   G  ADV +Y  L
Sbjct: 277 LEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTL 336

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +++  +L   + + G       Y  +I+G F+ G  D A  FFS+M   G 
Sbjct: 337 INGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI 396

Query: 259 PPNRPVYTMLI-TMCGRG 275
            P+   Y +L+  +C  G
Sbjct: 397 SPDIWTYNILLGGLCDNG 414



 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 138/282 (48%), Gaps = 5/282 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V++A + F +      +  V+ Y +L+  LC    +  A  L+  MI+K 
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY+ L++A+  +GK+ EA+E  +EM     +P +     LV GL     ++ A 
Sbjct: 256 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEAN 315

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM + M+ +G + D+ ++N+LI   CK+  VE  ++++  + + GL ++  TY  LI   
Sbjct: 316 QMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGF 375

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG +D+A      +   G  P    Y  ++ G+   G+ + A   F +M+ +    + 
Sbjct: 376 FQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDI 435

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             YT +I    + G+  EA +    ++  GL P     D+VT
Sbjct: 436 VTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKP-----DIVT 472



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 123/243 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ F K+G V  A E+F +    +    ++ Y+SL+  LC       A  +   M
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG + D  +Y  L+N +C + ++ +  +  +EMS +G        + L+QG   AG +
Sbjct: 322 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++  ++M   G   D+ T+N L+  +C +GE+E  + ++  + K  +  D+ TY  +
Sbjct: 382 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G ++EA+ L  +L   G KP    Y  ++ G+  +G   +    +++MK +G 
Sbjct: 442 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501

Query: 259 PPN 261
             N
Sbjct: 502 MKN 504



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 128/267 (47%), Gaps = 2/267 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C       A +L+ +M+  G+ PD   Y  ++++ C + ++ +A +F +E+  K
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERK 219

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V     LV GL N+     A ++++ MIK+    ++ T+++L++   K+G+V   
Sbjct: 220 GIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEA 279

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E++  + ++ +  D+ TY  L+  +     IDEA ++   +V  G       Y  +I G
Sbjct: 280 KELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLING 339

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +  + +D    F EM  +G   N   Y  LI    + G   +A  +  +M   G++P 
Sbjct: 340 FCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD 399

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
              ++++  GL  C   +L + + + E
Sbjct: 400 IWTYNILLGGL--CDNGELEKALVIFE 424



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 2/226 (0%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+ +A +   +M      P +   + L+  ++     +    +  KM   G   DL TFN
Sbjct: 65  KLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I   C   +V   + +   + KLG   D  T   L+    +   + +A  L+  +VE 
Sbjct: 125 IVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G+KP    Y  II  + +  + +DAF FF E++ KG  PN   YT L+       R+ +A
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           A  L +M +  +TP    +  + D     GK  + E  EL E  +R
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGK--VLEAKELFEEMVR 288



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/275 (20%), Positives = 112/275 (40%), Gaps = 35/275 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A+++F+          ++ +N LL A+ ++K +    +L ++M   G   D  T+ I
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N +C   ++  A   L                                    KM+K G
Sbjct: 126 VINCFCCCFQVSLALSIL-----------------------------------GKMLKLG 150

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  T  SL+   C+   V   V +   + ++G   D+  Y  +I ++ K   +++AF
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                +   G +P    Y  ++ G+    ++ DA    S+M  K   PN   Y+ L+   
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            + G+ +EA     EM  M + P    +  + +GL
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGL 305



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T + +I+ F + G VD A E F++   F     +  YN LL  LC+   
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M ++    D  TY  ++   C +GK+ EA      +S KG  P +     
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV 154
           ++ GL   G L   + +  KM ++G +
Sbjct: 476 MMSGLCTKGLLHEVEALYTKMKQEGLM 502


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F K G VD A E+F K    +    V+ YNSL+  LC+ K    +  ++ +M+  G
Sbjct: 70  LIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAG 129

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+ +TY  L+  + ++G  +E+    +EMS  G  P V   +  +  L     ++ AK
Sbjct: 130 IRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAK 189

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GLCADVSTYKIL 198
            + + M+ +G   ++ ++++L+      G    C     S+  L    G+  +   + IL
Sbjct: 190 DIFDSMVLKGPKPNIISYSTLLHGYAAEG----CFANMNSLVNLMVSKGIVPNHRFFNIL 245

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A ++ GM+D+A  +  ++   G  P    +A +I  + R G+ DDA   F+ M   G 
Sbjct: 246 INAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGV 305

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           PP+  VY  LI  C   G  V+A   + EM    + P
Sbjct: 306 PPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPP 342



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 129/295 (43%), Gaps = 1/295 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M    +  + +T + +I  +   G+   +V VF + ++     CV+  NS + AL
Sbjct: 120 RVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHAL 179

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  +   M+ KG  P+  +Y+ L++ + + G        +  M  KG  P  
Sbjct: 180 CRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNH 239

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R  ++L+      G ++ A  +   M  +G + D  TF ++I ++C+ G ++  +  +  
Sbjct: 240 RFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNH 299

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRG 241
           +  +G+    + Y+ LI      G + +A  L+  ++ +D   P    ++ II  +F+ G
Sbjct: 300 MVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEG 359

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           +  +       M   G  PN   +  L+      G   EA +YL+   ++ L  I
Sbjct: 360 RVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRI 414



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 111/246 (45%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A A+  R++R G  PD  +Y  L++ +   G++ +A E   +M ++  +P V   + L+ 
Sbjct: 48  ALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLID 107

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL     +  +++++ +M+  G   + +T+NSLI     +G  +  V ++  +   GL  
Sbjct: 108 GLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIP 167

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V      I A+ +   I EA  +  ++V  G KP    Y+ ++ G    G F +     
Sbjct: 168 CVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLV 227

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           + M  KG  PN   + +LI    R G   +A     +M   G+ P +  F  V   L   
Sbjct: 228 NLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 287

Query: 311 GKHDLA 316
           G+ D A
Sbjct: 288 GRLDDA 293



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 35/213 (16%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +  ++++ G   D+ ++N+LI+   K GEV+   E++Y + +  +  DV TY  L
Sbjct: 46  ELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 105

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK---- 254
           I  + K   + ++ R+L  +V+ G +P    Y  +I G    G + ++   F EM     
Sbjct: 106 IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGL 165

Query: 255 -------------------------------IKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                                          +KG  PN   Y+ L+      G F    +
Sbjct: 166 IPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNS 225

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            +  M   G+ P  R F+++ +    CG  D A
Sbjct: 226 LVNLMVSKGIVPNHRFFNILINAYARCGMMDKA 258



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 81/200 (40%), Gaps = 26/200 (13%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL--------------------------Q 111
           M++ G  P+  T+  L+  +C  G M EA  +L                           
Sbjct: 371 MVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFH 430

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + G    ++   +++ GL      + A  ++ K+       D+ TFN +I  + K G
Sbjct: 431 EMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVG 490

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +   E++ ++   GL   V TY ++I  + K    +EA  L  ++ + G  P   L  
Sbjct: 491 RRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLN 550

Query: 232 PIIKGMFRRGQFDDAFCFFS 251
            I++ + ++ +   A  + S
Sbjct: 551 HIVRMLLKKAEVAKASNYLS 570



 Score = 43.1 bits (100), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/246 (18%), Positives = 93/246 (37%), Gaps = 27/246 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK----------LFH- 69
           S II    K G V    ++ +       +  V+ +NSL+   C V           L+H 
Sbjct: 349 SSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQ 408

Query: 70  ---------------GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
                           A  +   MI  G     +TY +++   C +    EA   L+++ 
Sbjct: 409 LALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLF 468

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                  +   ++++  +L  G  + AK++   +   G V  + T+N +I  + K    E
Sbjct: 469 AMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYE 528

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++ SV K G   D      ++  + K   + +A   L +++++ +    +    ++
Sbjct: 529 EADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYL-SIIDENNLTLEASTISLL 587

Query: 235 KGMFRR 240
             +F R
Sbjct: 588 ASLFSR 593



 Score = 40.4 bits (93), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/150 (20%), Positives = 62/150 (41%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +VS QT  +++    ++   D A  +  K  A N +  ++ +N ++ A+ +V     A  
Sbjct: 438 TVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKE 497

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L   +   G VP   TY ++++         EA      +   G  P  R  + +V+ LL
Sbjct: 498 LFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLL 557

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
               +  A   ++ + +    L+  T + L
Sbjct: 558 KKAEVAKASNYLSIIDENNLTLEASTISLL 587


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 144/307 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    L+ +  T + +I+ F K G ++ A+ + ++      +  V+ YN+++  + + 
Sbjct: 335 ESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKA 394

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A +L   M+  G  PD  TY +L++ +  S  M +A E L EM  +   P     
Sbjct: 395 GEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ GL ++  L+ A +++++MI+ G   ++  + +LI+   +    E  +E+   +  
Sbjct: 455 SVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA 514

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D+  Y  LI  + +A  ++EA  LL ++ E G KP    Y   I    + G+   
Sbjct: 515 NGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQV 574

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A  +F +M   G  PN  +YT+LI      G  VEA +    M E GL P  R +  +  
Sbjct: 575 AERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 306 GLKNCGK 312
            L   GK
Sbjct: 635 SLSKNGK 641



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 4/313 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +  T    I  + K G +  A   F    +       ++Y  L+   C+V     A +  
Sbjct: 555 NAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTF 614

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M+ KG +PD R Y+ ++++   +GK +EA     +    G  P V   + L+ G    
Sbjct: 615 KCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKE 674

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +E A Q+ ++M+  G   ++  +N+LI  +CK GEV    E++  + +  L  DV TY
Sbjct: 675 GDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTY 734

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    K+G + EAF+L   ++  G  P   +Y  +I G  + G  + A   F E + 
Sbjct: 735 STIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQ 794

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           K         +++ + C + G+ +EA     +M +  LTP    + ++ D     GK ++
Sbjct: 795 KSVGSLSAFNSLIDSFC-KHGKVIEARELFDDMVDKKLTPNIVTYTILIDAY---GKAEM 850

Query: 316 AEKIELLEVSLRS 328
            E+ E L + + +
Sbjct: 851 MEEAEQLFLDMET 863



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/260 (27%), Positives = 121/260 (46%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+  +  YN+ +  LC+      A  + + M+ KG  PD  TY +LV+ +C   + +EA+
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAK 331

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              + M   G NP       L+ G +  G +E A ++ ++MI +G  L++ T+N++I  I
Sbjct: 332 LIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGI 391

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K+GE+   + ++  +   GL  D  TY +LI    K+  + +A  LL  +      P P
Sbjct: 392 AKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSP 451

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y+ +I G+        A     +M   G  PN  +Y  LI    +  R+  A   L  
Sbjct: 452 FTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 288 MTEMGLTPISRCFDLVTDGL 307
           M   G+ P   C++ +  GL
Sbjct: 512 MIANGVLPDLFCYNCLIIGL 531



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 139/326 (42%), Gaps = 5/326 (1%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  EL   MK   L+ SP T S++I        +  A EV ++      +  V +Y +
Sbjct: 432 MAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGT 491

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+ A  +   +  A  L++ MI  G +PD   Y  L+   C + K+ EA+  L +M +KG
Sbjct: 492 LIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKG 551

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P        +     +G ++ A++    M+  G V +   +  LI+  C  G     +
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             +  + + GL  D+  Y  +I ++SK G   EA  +    ++ G  P   LY  +I G 
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGF 671

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G  + A   + EM   G  PN  VY  LI    + G   +A     E+ E  L P  
Sbjct: 672 CKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDV 731

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLE 323
             +  + DG   C   +L E  +L +
Sbjct: 732 VTYSTIIDGY--CKSGNLTEAFKLFD 755



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 142/317 (44%), Gaps = 7/317 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL+V      + I++F   G ++ A  VF    +      ++  N+L+  L +  +    
Sbjct: 171 NLTV----FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLF 226

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + +   M+    VPD  TY  ++ A C  G + + +  L EM +K   P +   +  + G
Sbjct: 227 WKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGG 285

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G ++ A ++   M+++G   D  T+  L++  CK    +    ++ S+   GL  +
Sbjct: 286 LCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPN 345

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI    K G I+EA R+   ++  G K     Y  +I G+ + G+   A   F+
Sbjct: 346 RFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFN 405

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM + G  P+   Y +LI    +     +A   L EM    LTP    + ++  GL  C 
Sbjct: 406 EMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGL--CH 463

Query: 312 KHDLAEKIELLEVSLRS 328
             DL +  E+L+  +R+
Sbjct: 464 SSDLQKANEVLDQMIRN 480



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 142/348 (40%), Gaps = 42/348 (12%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II    K+G    A+ VF K         V LYNSL+   C+      A  L   M+ 
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH 689

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P+   Y  L+N  C  G++ +A+E   E+ +K   P V     ++ G   +G L  
Sbjct: 690 NGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTE 749

Query: 141 AKQMVNKMIKQGFVLD----------------------------------LETFNSLIET 166
           A ++ ++MI +G   D                                  L  FNSLI++
Sbjct: 750 AFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDS 809

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK G+V    E++  +    L  ++ TY ILI A  KA M++EA +L  ++      P 
Sbjct: 810 FCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 869

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  ++    + G        F +M+ +G   +   Y ++ +   + G+ +EA   L 
Sbjct: 870 TLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLN 929

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL------EVSLRS 328
           +    G+      FD +   L  C +  ++  +ELL      E+SL S
Sbjct: 930 KSLVEGIKLEDDVFDALIFHL--CKEKQISTVLELLSEMGKEELSLSS 975



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/306 (21%), Positives = 125/306 (40%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +LM    L     T +L+++ F K      A  +F    +         Y +L+    + 
Sbjct: 300 KLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE 359

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   MI +G   +  TY  ++     +G+M +A     EM   G  P     
Sbjct: 360 GNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTY 419

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           +LL+ G L +  +  A +++ +M  +       T++ LI  +C S +++   E+   + +
Sbjct: 420 NLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIR 479

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V  Y  LI A  +    + A  LL  ++ +G  P    Y  +I G+ R  + ++
Sbjct: 480 NGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEE 539

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A     +M  KG  PN   Y   I +  + G    A  Y  +M   G+ P +  + ++  
Sbjct: 540 AKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIK 599

Query: 306 GLKNCG 311
           G  + G
Sbjct: 600 GHCDVG 605



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 131/331 (39%), Gaps = 38/331 (11%)

Query: 23   IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
            +I    K G V  A E+F++    +    V+ Y++++   C+      A+ L   MI KG
Sbjct: 702  LINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG 761

Query: 83   FVPDKRTYAILVN----------------------------------AWCSSGKMREAQE 108
              PD   Y IL++                                  ++C  GK+ EA+E
Sbjct: 762  ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARE 821

Query: 109  FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
               +M DK   P +    +L+     A  +E A+Q+   M  +  + +  T+ SL+ +  
Sbjct: 822  LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 169  KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
            + G     + ++  +   G+  D   Y ++  A  K G   EA +LL+  + +G K    
Sbjct: 882  QIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDD 941

Query: 229  LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            ++  +I  + +  Q        SEM  +    +      L+    + G   EA+  L  M
Sbjct: 942  VFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVM 1001

Query: 289  TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +G  P S     +TD + + G+ D+   I
Sbjct: 1002 QRLGWVPTSLS---LTDSI-STGRDDMKSDI 1028



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 105/251 (41%), Gaps = 20/251 (7%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ-----GLLNA------- 135
            +Y+IL    C+SG + +A   L+++  +   PP+   D LV+     G  N        
Sbjct: 121 HSYSILAIRLCNSGLIHQADNMLEKLL-QTRKPPLEILDSLVRCYREFGGSNLTVFDIFI 179

Query: 136 ------GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                 G+L  A  +    I +GF   L   N+L+  + K+  +    ++Y S+ +  + 
Sbjct: 180 DKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIV 239

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            DV TY  +I A  K G + +   +L  + E   KP    Y   I G+ + G  D+A   
Sbjct: 240 PDVYTYTNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEV 298

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              M  KG  P+   YT+L+    +  R  EA      M   GL P    +  + DG   
Sbjct: 299 KKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIK 358

Query: 310 CGKHDLAEKIE 320
            G  + A +I+
Sbjct: 359 EGNIEEALRIK 369


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 10/320 (3%)

Query: 6   ELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAF-NCQQCVLLYNSLLF 60
           EL+  Y   + SP    +I++ + + GL  NA+ VF+   KC    + + C    NSLL 
Sbjct: 144 ELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSC----NSLLN 199

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +    H A+ + ++MIR G VPD    +I+VNA+C  GK+ EA  F+++M + G  P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+ G ++ G +E+AK ++  M ++G   ++ T+  LI+  CK  +++   ++ 
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 181 YSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
             +  +  L  D   Y +LI    + G ID+A RLL  ++  G K    +   +I G  +
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           RG+  +A    + M      P+   Y  L+    R G   EA N   +M + G+ P    
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ +  GL   G  D A +I
Sbjct: 440 YNTLLKGLCRVGAFDDALQI 459



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 1/301 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +S+++  F K G VD A     K      +  ++ Y+SL+     +     A  +++ M 
Sbjct: 229 VSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMS 288

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAGYL 138
            KG   +  TY +L+  +C   KM EA++ L+ M ++    P  R   +L+ G    G +
Sbjct: 289 EKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKI 348

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++++M++ G   +L   NSLI   CK GE+     +   +    L  D  +Y  L
Sbjct: 349 DDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTL 408

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G   EAF L   ++++G +P    Y  ++KG+ R G FDDA   +  M  +G 
Sbjct: 409 LDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGV 468

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ L+    +   F  A+    ++   G T     F+ +  GL   GK   AE+
Sbjct: 469 APDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEE 528

Query: 319 I 319
           I
Sbjct: 529 I 529



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 149/335 (44%), Gaps = 37/335 (11%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +   ++I+ + + G +D+AV + ++      +  + + NSL+   C+    H A  +I R
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+     PD  +Y  L++ +C  G   EA     +M  +G  P V   + L++GL   G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 138 LESAKQMVNKMIKQGFVLD-------------LE----------------------TFNS 162
            + A Q+ + M+K+G   D             +E                      TFN+
Sbjct: 453 FDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I  +CK G++    E++  +  LG   D  TY+ LI    KA  + +AF++   +  + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREP 572

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P   +Y  +I G+F+  +  +     +EM I+G  PN   Y  LI    + G   +A 
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 283 NYLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLA 316
           +   EMTE GL+  I  C  +V+ GL   G+ D A
Sbjct: 633 SSYFEMTENGLSANIIICSTMVS-GLYRLGRIDEA 666



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 138/298 (46%), Gaps = 3/298 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL V P   T   +I  +   G V+ A  V    +     + V+ Y  L+   C+     
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMD 313

Query: 70  GAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
            A  ++R M  +   VPD+R Y +L++ +C +GK+ +A   L EM   G    +   + L
Sbjct: 314 EAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSL 373

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G +  A+ ++ +M+      D  ++N+L++  C+ G       +   + + G+
Sbjct: 374 INGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGI 433

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
              V TY  L+  + + G  D+A ++ H +++ G  P    Y+ ++ G+F+   F+ A  
Sbjct: 434 EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGAST 493

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + ++  +G   +R  +  +I+   + G+ VEA     +M ++G +P    +  + DG
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 551



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 143/354 (40%), Gaps = 36/354 (10%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K  +L  SP   T   +I+ + K   V  A +V            + +YNSL+  L + +
Sbjct: 532 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSR 591

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
                  L+  M  +G  P+  TY  L++ WC  G + +A     EM++ G +  +    
Sbjct: 592 RLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICS 651

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF-------------------------- 160
            +V GL   G ++ A  ++ KM+  GF  D E F                          
Sbjct: 652 TMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLL 711

Query: 161 ------NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                 N  I  +CK+G+V+     +  +   G   D  TY  LI   S AG +DEAFRL
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              ++  G  P    Y  +I G+ +    D A   F ++  KG  PN   Y  LI    +
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            G    A     +M E G++P    +  + +GL  C   D+   ++LL   +++
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGL--CKHGDIERSMKLLNQMIKA 883



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 129/296 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M  +NL     + + +++ + + G    A  + +K      +  VL YN+LL  LC 
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V  F  A  +   M+++G  PD+  Y+ L++          A    +++  +GF      
Sbjct: 450 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL   G +  A+++ +KM   G   D  T+ +LI+  CK+  V    ++  ++ 
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +   +  Y  LI  + K+  + E   LL  +   G  P    Y  +I G  + G  D
Sbjct: 570 REPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            AF  + EM   G   N  + + +++   R GR  EA   + +M + G  P   CF
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 103/204 (50%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++YN  +  LC+      A      +  KGFVPD  TY  L++ + ++G + EA     E
Sbjct: 715 IVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDE 774

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G  P +   + L+ GL  +  ++ A+++ +K+ ++G   ++ T+N+LI+  CK G 
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGN 834

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++   ++   + + G+   V TY  LI  + K G I+ + +LL+ +++ G       Y  
Sbjct: 835 MDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCT 894

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIK 256
           +++G  R G+       +  M I+
Sbjct: 895 LVQGYIRSGEMQKIHKLYDMMHIR 918



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 144/352 (40%), Gaps = 44/352 (12%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-----YNSLL 59
           ++ M    +S +  T +L+I+ + K   +D A +V         ++  L+     Y  L+
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ----EEAALVPDERAYGVLI 339

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C       A  L+  M+R G   +      L+N +C  G++ EA+  +  M D    
Sbjct: 340 DGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLK 399

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     + L+ G    G+   A  + +KM+++G    + T+N+L++ +C+ G  +  +++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ + K G+  D   Y  L+  + K    + A  L  +++  G       +  +I G+ +
Sbjct: 460 WHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 240 RGQ-------FD------------------DAFCFFSEM----KIKGHPPNRPV------ 264
            G+       FD                  D +C  S +    K+KG     P+      
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEM 579

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           Y  LI+   +  R VE  + L EM   GLTP    +  + DG    G  D A
Sbjct: 580 YNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 82/162 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I  +   G VD A  + ++         ++ YN+L+  LC+ +    A  L  ++
Sbjct: 751 TYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKL 810

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  P+  TY  L++ +C  G M  A +   +M ++G +P V     L+ GL   G +
Sbjct: 811 HQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDI 870

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           E + +++N+MIK G    L  + +L++   +SGE++   ++Y
Sbjct: 871 ERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLY 912



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K   VD A  +F+K         V+ YN+L+   C++     A+ L  +M
Sbjct: 786 TYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKM 845

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P   TY+ L+N  C  G +  + + L +M   G +  +     LVQG + +G +
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEM 905

Query: 139 ESAKQMVNKM 148
           +   ++ + M
Sbjct: 906 QKIHKLYDMM 915


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 133/273 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   VDNA+++ N+      +   + YNSL+  LC    +  A  ++  M ++ 
Sbjct: 192 IIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKRE 251

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T+  L++A    G++ EA+E  +EM  +  +P +    LL+ GL     L+ A+
Sbjct: 252 IYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAE 311

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           QM   M+ +G   D+ T++ LI   CKS +VE  ++++  + + G+  +  TY +LI   
Sbjct: 312 QMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGY 371

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +AG ++ A  +   +V  G  P    Y  ++ G+   G+ + A    ++M+  G   + 
Sbjct: 372 CRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADI 431

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             Y ++I    + G   +A +    +   GLTP
Sbjct: 432 VTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTP 464



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 145/317 (45%), Gaps = 5/317 (1%)

Query: 1   MWKTIELMK-PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W+ ++++  P+NL     T ++++  F +   +  A+    K      +  ++ + SLL
Sbjct: 103 LWEQMQMLGIPHNLC----TCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLL 158

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C     + A  +  RM+  G+ P+   Y  +++  C S ++  A + L  M   G  
Sbjct: 159 NGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIR 218

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     + L+ GL N+G  + A +MV+ M K+    D+ TFN+LI+   K G +    E+
Sbjct: 219 PDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEEL 278

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y  + +  L  D+ TY +LI  +     +DEA ++   +V  G  P    Y+ +I G  +
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             + +     F EM  +G   N   YT+LI    R G+   A      M   G+ P    
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIIT 398

Query: 300 FDLVTDGLKNCGKHDLA 316
           ++++  GL + GK + A
Sbjct: 399 YNVLLHGLCDNGKIEKA 415



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 142/303 (46%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++  F +   + +A+ +F++      +  V++YN+++  LC+ K    A  L+ RM
Sbjct: 153 TFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRM 212

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C+SG+  +A   +  M+ +   P V   + L+   +  G +
Sbjct: 213 EVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRI 272

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++  +MI++    D+ T++ LI  +C    ++   +M+  +   G   DV TY IL
Sbjct: 273 SEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSIL 332

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  ++   +L   + + G       Y  +I+G  R G+ + A   F  M   G 
Sbjct: 333 INGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGV 392

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PPN   Y +L+      G+  +A   L +M + G+      ++++  G+  C   ++A+ 
Sbjct: 393 PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGM--CKAGEVADA 450

Query: 319 IEL 321
            +L
Sbjct: 451 WDL 453



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 121/264 (45%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N LL   C       A + + +M++ G  PD  T+  L+N +C   ++ +A      M +
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVE 179

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G+ P V   + ++ GL  +  +++A  ++N+M   G   D  T+NSLI  +C SG  + 
Sbjct: 180 MGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDD 239

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              M   + K  +  DV T+  LI A  K G I EA  L   ++     P    Y+ +I 
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIY 299

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+    + D+A   F  M  KG  P+   Y++LI    +  +         EM++ G+  
Sbjct: 300 GLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVR 359

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
            +  + ++  G    GK ++AE+I
Sbjct: 360 NTVTYTVLIQGYCRAGKLNVAEEI 383



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 130/277 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G  D+A  + +  T       V  +N+L+ A  +      A  L   M
Sbjct: 223 TYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEM 282

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+   PD  TY++L+   C   ++ EA++    M  KG  P V    +L+ G   +  +
Sbjct: 283 IRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKV 342

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M ++G V +  T+  LI+  C++G++    E++  +   G+  ++ TY +L
Sbjct: 343 EHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVL 402

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G I++A  +L ++ + G       Y  II+GM + G+  DA+  +  + +KG 
Sbjct: 403 LHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGL 462

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   YT ++    + G   EA     +M E G+ P
Sbjct: 463 TPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILP 499



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 2/214 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T SL+I     +  +D A ++F    +  C   V+ Y+ L+   C+ K     
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHG 345

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L   M ++G V +  TY +L+  +C +GK+  A+E  + M   G  P +   ++L+ G
Sbjct: 346 MKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHG 405

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L + G +E A  ++  M K G   D+ T+N +I  +CK+GEV    ++Y S+   GL  D
Sbjct: 406 LCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPD 465

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           + TY  ++  + K G+  EA  L   + EDG  P
Sbjct: 466 IWTYTAMMLGLYKKGLRGEADALFRKMKEDGILP 499


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 146/313 (46%), Gaps = 3/313 (0%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S  P  +S  ++I  F   G VD A  +F +      Q  V+ Y +++  LC+ ++   A
Sbjct: 198 SCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + ++MI KG  PD  TY  L++ + S GK +E    L+EMS  G  P       L+  
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G    A+ + + MI++G   ++  +  LI      G +    ++   + + GL  D
Sbjct: 318 LCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              + I+  A +K  MIDEA  + + + + G  P    Y  +I  + + G+ DDA   F+
Sbjct: 378 HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFN 437

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +M  +G  PN  V+  L+       ++ +A  +  EM   G+ P    F+ +   L   G
Sbjct: 438 QMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497

Query: 312 KHDLAEK-IELLE 323
           +   A++ I+L+E
Sbjct: 498 QVMKAQRLIDLME 510



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 130/292 (44%), Gaps = 4/292 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYAL 74
            P T S++I  F + G +++    F        +   ++ N LL  LC+ K L      L
Sbjct: 93  DPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDIL 152

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD---KGFNPPVRGRDLLVQG 131
           ++RM   G  PD  +Y  L+  +C+  +  EA E L  M+D   +   P V    +++ G
Sbjct: 153 VKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVING 212

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A  +  +M+ +G   ++ T+ ++I+ +CK+  V+    ++  +   G+  D
Sbjct: 213 FFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPD 272

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI      G   E  R+L  +   G KP    Y  ++  +   G+  +A   F 
Sbjct: 273 NDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFD 332

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            M  KG  PN  +Y +LI      G   E  + L  M E GL+P    F+++
Sbjct: 333 SMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 126/270 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   + LM    LS      ++I   + K  ++D A+ +FNK         V+ Y +L+ 
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALID 421

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC++     A     +M+ +G  P+   +  LV   C+  K  +A+EF  EM ++G  P
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRP 481

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + ++  L   G +  A+++++ M + G    + ++ +LI   C  G ++   +  
Sbjct: 482 DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSL 541

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +  +GL  D  TY  L+    +AG ID+A+ +   ++ +G  P    Y+ I+ G+F  
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTT 601

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            +F +A   +  M   G   N  +Y +++ 
Sbjct: 602 RRFSEAKELYLNMITSGKQWNIWIYNIILN 631



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   LS        +I+   K G VD+AV  FN+         + ++NSL++ LC V  
Sbjct: 404 MKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A      M+ +G  PD   +  ++   C+ G++ +AQ  +  M   G  P V     
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTT 523

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G ++ A + ++ M+  G   D  T+N+L+   C++G ++    ++  + + G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   V TY  ++  +       EA  L  N++  G +    +Y  I+ G+ +    D+AF
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  +  K        + ++I    + GR  +A +    ++  GL P    + L+ + L
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 11/320 (3%)

Query: 9   KPYNL-------SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K YNL        + P   T + +I+   K  +VD A  VF +      +     YN L+
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLI 280

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                +  +     ++  M   G  PD  TY  L+N  C++G+ REA+     M  KG  
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIK 340

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L+ G    G L     ++N M++ G   D   FN +     K   ++  + +
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHI 400

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + + GL  DV  Y  LI A+ K G +D+A    + ++ +G  P   ++  ++ G+  
Sbjct: 401 FNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCT 460

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             +++ A  F+ EM  +G  P+   + T+L  +C + G+ ++A   +  M  +G  P   
Sbjct: 461 VDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTK-GQVMKAQRLIDLMERVGTRPGVI 519

Query: 299 CFDLVTDGLKNCGKHDLAEK 318
            +  +  G    G+ D A K
Sbjct: 520 SYTTLIGGHCLVGRIDEAAK 539



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 3/272 (1%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR---KGFVPDKRTYAILVNAWCSSGKMR 104
           C   V+ YN+LL   C  K    A  L+  M     +   P+  +YAI++N + + G++ 
Sbjct: 161 CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVD 220

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A     EM D+G  P V     ++ GL  A  ++ A+ +  +MI +G   D +T+N LI
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLI 280

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
                 G+ +  V M   +   GL  D  TY  L+  +   G   EA  L  +++  G K
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIK 340

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P  ++Y  +I G   +G   +     + M   G  P+  ++ ++ T   +     EA + 
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHI 400

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             +M + GL+P    +  + D L   G+ D A
Sbjct: 401 FNKMKQQGLSPDVVNYGALIDALCKLGRVDDA 432



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 123/310 (39%), Gaps = 4/310 (1%)

Query: 2   WKTI----ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +    E M  + L     T   ++     +G    A  +F+       +  V +Y  
Sbjct: 289 WKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGI 348

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+            + L+  M+  G  PD   + I+  A+     + EA     +M  +G
Sbjct: 349 LIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
            +P V     L+  L   G ++ A    N+M+ +G   ++  FNSL+  +C   + E   
Sbjct: 409 LSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAK 468

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E Y+ +   G+  DV  +  ++  +   G + +A RL+  +   G +P    Y  +I G 
Sbjct: 469 EFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGH 528

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G+ D+A      M   G  P+   Y  L+    R GR  +A     EM   G+TP  
Sbjct: 529 CLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGV 588

Query: 298 RCFDLVTDGL 307
             +  +  GL
Sbjct: 589 VTYSTILHGL 598



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 6/242 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +L+   C V     A   +  M+  G  PD+ TY  L++ +C +G++ +A    +
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P V     ++ GL        AK++   MI  G   ++  +N ++  + K+ 
Sbjct: 578 EMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNN 637

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+   +++ S+C      +++T+ I+I A+ K+G  ++A  L   +   G  P    Y 
Sbjct: 638 CVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYC 697

Query: 232 PIIKGMFRRG---QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            I + +   G   +FDD    FS M+  G  PN  +   L+      G    A  YL ++
Sbjct: 698 LIAENLIEEGYLEEFDD---LFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKL 754

Query: 289 TE 290
            E
Sbjct: 755 DE 756



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 108/244 (44%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D A +  +   +   +     YN+LL   C       AY + R M+R G  P   TY
Sbjct: 532 GRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + +++   ++ +  EA+E    M   G    +   ++++ GL     ++ A ++   +  
Sbjct: 592 STILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           + F L++ TFN +I  + KSG  E  + ++ ++   GL  DV TY ++   + + G ++E
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE 711

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
              L   + + G  P   +   +++ +  RG    A  +  ++  K          MLI+
Sbjct: 712 FDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLIS 771

Query: 271 MCGR 274
           +  R
Sbjct: 772 LLSR 775



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 133/299 (44%), Gaps = 15/299 (5%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA-------YALIRRMIR 80
           G  GL D+A+++F+          V+ +N LL A+  V     +        +L  RMIR
Sbjct: 26  GSLGL-DDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIR 84

Query: 81  K---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +      PD  TY+IL+  +C  G++         +   G+       + L++GL +A  
Sbjct: 85  ECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKR 144

Query: 138 L-ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK---LGLCADVS 193
           L E+   +V +M + G   D+ ++N+L++  C     E  +E+ + +          +V 
Sbjct: 145 LCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVV 204

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +Y I+I      G +D+A+ L   +++ G +P    Y  +I G+ +    D A   F +M
Sbjct: 205 SYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQM 264

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             KG  P+   Y  LI      G++ E    L EM+  GL P    +  + + L N G+
Sbjct: 265 IDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGR 323



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 65/150 (43%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++I+    K+  VD A ++F    + + Q  +  +N ++ AL +      A  L   +  
Sbjct: 627 NIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISS 686

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G VPD  TY ++       G + E  +    M   G  P  R  + LV+ LL+ G +  
Sbjct: 687 YGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITR 746

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           A   + K+ ++ F L+  T   LI  + + 
Sbjct: 747 AGAYLCKLDEKNFSLEASTTAMLISLLSRD 776


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 133/290 (45%), Gaps = 13/290 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I+   K   + +A +      +F     + +YN L+   C+      A +L   +
Sbjct: 300 TFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +   +PD  TY+IL+   C   +M EA   LQEM  KGF P     + L+ G    G +
Sbjct: 360 EKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNM 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++ ++M ++G   ++ TF++LI+  CK+G++E  + +Y  +   GL  DV  Y  L
Sbjct: 420 EKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTAL 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF-------- 250
           I    K G   EAFRL   + E G  P     + +I G+ + G+  DA   F        
Sbjct: 480 IDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDT 539

Query: 251 -----SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
                +E+      PN  +YT LI      GR  +A+ +  +M   GL P
Sbjct: 540 TGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRP 589



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 6/310 (1%)

Query: 11  YNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y + V P  Q  +++++   K G  D   +V+    A      V+ Y +L+   C    F
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ L   MI K   P    Y IL+   C   ++ EA+   + M + G  P +   + +
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G     +++ A ++  +M+  G + ++ TF  LI+ +CK+ E+    +    +   G+
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDA 246
             ++  Y  LI    KAG + EA   LH+ +E  H+  P +  Y+ +IKG+    + ++A
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALS-LHSEIEK-HEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EMK KG  PN   Y  LI    + G   +A     +MTE G+ P    F  + DG
Sbjct: 388 DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447

Query: 307 LKNCGKHDLA 316
               GK + A
Sbjct: 448 YCKAGKMEAA 457



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 134/306 (43%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWK    M     S +  T   +I+   + G    A  +F++         V++Y  L+ 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR 236

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A ++ R M   G +P+  TY  +++ +C    +++A E  QEM   G  P
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLP 296

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+ GL     + SA++ +  M   G V ++  +N LI+  CK+G +   + ++
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  DV TY ILI  +     ++EA  LL  + + G  P    Y  +I G  + 
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  + A    S+M  KG  PN   ++ LI    + G+   A     EM   GL P    +
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 301 DLVTDG 306
             + DG
Sbjct: 477 TALIDG 482



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 2/268 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+++   C++     A  L + M+  G +P+  T+ IL++  C + +M  A++FL +M+
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   + L+ G   AG L  A  + +++ K   + D+ T++ LI+ +C    +E
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + K G   +  TY  LI    K G +++A  +   + E G +P    ++ +I
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ + A   ++EM IKG  P+   YT LI    + G   EA     EM E GL 
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL 322
           P       + DGL  C    +++ I+L 
Sbjct: 506 PNVFTLSCLIDGL--CKDGRISDAIKLF 531



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 7/307 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P    ++I  F + GLV+ A+ V+ K       Q     N +L  L +   F   + + 
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC---NMVLDGLVKKGRFDTMWKVY 181

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+  TY  L++  C  G   +A     EM +K   P V    +L++GL   
Sbjct: 182 GDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             +  A+ M   M   G + +L T+N++++  CK   V+  +E+Y  +   GL  +V T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI  + K   +  A + L ++   G  P   +Y  +I G  + G   +A    SE++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               P+   Y++LI  +CG   R  EA   L EM + G  P +  ++ + DG   C + +
Sbjct: 362 HEILPDVFTYSILIKGLCGV-DRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY--CKEGN 418

Query: 315 LAEKIEL 321
           + + IE+
Sbjct: 419 MEKAIEV 425



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + K   V  A+E++ +         V+ +  L+  LC+      A   +  M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP+   Y  L++ +C +G + EA     E+      P V    +L++GL     +
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRM 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M K+GF+ +  T+N+LI+  CK G +E  +E+   + + G+  ++ T+  L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KAG ++ A  L   +V  G  P    Y  +I G F+ G   +AF    EM+  G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            PN    + LI    + GR  +A    +  T    T
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTT 540



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 22/264 (8%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK      +  T + +I+ + K G ++ A+EV ++ T    +  ++ +++L+   C+
Sbjct: 391 LQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCK 450

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   M+ KG +PD   Y  L++     G  +EA    +EM + G +P V  
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFT 510

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ GL   G +  A ++   + K G        N L  ++C    V     MY ++ 
Sbjct: 511 LSCLIDGLCKDGRISDAIKLF--LAKTGTDTTGSKTNELDRSLCSPNHV-----MYTALI 563

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GLC D              G I +A +   ++   G +P       II+G FR     
Sbjct: 564 Q-GLCTD--------------GRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLR 608

Query: 245 DAFCFFSEMKIKGHPPNRPVYTML 268
           D     +++   G  PN  VY +L
Sbjct: 609 DVMMLQADILKMGIIPNSSVYRVL 632



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 30/291 (10%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIR-----------------------KGFVPDKRTY 90
           LY++++  L   KL+  A  L+R +I+                         F P+   +
Sbjct: 72  LYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VF 129

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L+ A+   G + EA     +M      P ++  ++++ GL+  G  ++  ++   M+ 
Sbjct: 130 GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVA 186

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   ++ T+ +LI+  C+ G+      ++  + +  +   V  Y ILI  +     I E
Sbjct: 187 RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISE 246

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +   +   G  P    Y  ++ G  +      A   + EM   G  PN   + +LI 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              +    V A  +L++M   G+ P    ++ + DG   C   +L+E + L
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY--CKAGNLSEALSL 355


>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
          Length = 975

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +     +  C+  +L++N L+  LC +      Y +  +M   G  P + TY  
Sbjct: 456 LDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNS 515

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L    C     + A + L+EM   G  P ++    +VQ L  +G +  A Q ++ M++ G
Sbjct: 516 LFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIG 575

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCADVSTYKILIPAVSKAGMIDEA 211
           F+ D+ T+++ +  +C +GEV+  + ++  + CK  L  DV  + ILI    K+  +DEA
Sbjct: 576 FLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYL-PDVVAHNILINGFRKSSKLDEA 634

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            +++  ++E G  P    Y  +I    + G+ + A  +  +M  +   P    YT LI  
Sbjct: 635 QKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDG 694

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               GR  EA     EM E G  P +  +    +GL+ CG+ + A
Sbjct: 695 FCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETA 739



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I E      ++    +FN+            YNSL + +C  K    A  L+R M   G
Sbjct: 481 LIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNG 540

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P  +    +V   C SG++ EA +FL  M   GF P +      + G+ N G ++ A 
Sbjct: 541 HPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDAL 600

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   +  + ++ D+   N LI    KS +++   ++   + + GL   V TY ++I   
Sbjct: 601 HLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVC 660

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G I++A   L  +V +  +P    Y  +I G    G+ D+A   + EM+ KG  PN 
Sbjct: 661 CKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNN 720

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             YT  I    + GR   A  Y  EM   G 
Sbjct: 721 IAYTAFINGLRKCGRIETALTYFEEMVTKGF 751



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 147/331 (44%), Gaps = 24/331 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +S +TLS+++  F K G VD A+++F K  ++     + +Y+ L+  LC+ K 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD---KGFNPPVRG 124
              A  L + M   G  PD R    ++ A+C  G       F+ E ++    G   P+  
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVPL-- 388

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-------------------DLETFNSLIE 165
            +++++ L++ G +E+A Q++  M+  G  +                   + ++FN ++ 
Sbjct: 389 YNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVC 448

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK  +++  + +   +  LG    +  +  LI  +     ++E + + + + + G  P
Sbjct: 449 GLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTP 508

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +  G+ RR     A     EM+  GHPP     T ++      GR  EA  +L
Sbjct: 509 SEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFL 568

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             M ++G  P    +    +G+ N G+ D A
Sbjct: 569 DGMLQIGFLPDIVTYSAAMNGMCNTGEVDDA 599



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 117/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N ++  LC+VK    A AL + MI  G       +  L++  C+  ++ E      +M 
Sbjct: 443 FNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMK 502

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G  P     + L  G+      ++A  ++ +M   G    ++    +++ +C SG V 
Sbjct: 503 DLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVT 562

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V+    + ++G   D+ TY   +  +   G +D+A  L  ++    + P    +  +I
Sbjct: 563 EAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILI 622

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +  + D+A     EM  KG  P+   Y ++I +C + GR  +A +YL +M      
Sbjct: 623 NGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQ 682

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    +  + DG  + G+ D A K+
Sbjct: 683 PTVITYTSLIDGFCSAGRPDEAIKL 707



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 6/233 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++P  L  ++   G  GL D AV  F+   A F C      YN LL AL +      A A
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195

Query: 74  LIRRMIRK---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            +R M+ +   G V DK T   L+  +C++G+  +A +  Q MS+ G+        L+V 
Sbjct: 196 RLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMV- 253

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G ++ A +++  M   G  L  +T + L+    K G V+  ++M+  +   G   
Sbjct: 254 AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVV 313

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           D++ Y +LI  + +   I  A +L   +   G  P   L   +I+   R G F
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDF 366



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F K   +D A ++  +         V+ YN ++   C+      A + + +M+ 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVY 678

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P   TY  L++ +CS+G+  EA +   EM +KG  P        + GL   G +E+
Sbjct: 679 EEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIET 738

Query: 141 AKQMVNKMIKQGFVLD 156
           A     +M+ +GF LD
Sbjct: 739 ALTYFEEMVTKGFELD 754



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 63/149 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    L  S  T +L+I+   K G ++ A+   +K      Q  V+ Y SL+   
Sbjct: 636 KIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGF 695

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L   M  KG  P+   Y   +N     G++  A  + +EM  KGF    
Sbjct: 696 CSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGFELDT 755

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                 +  L++ GY     +++ +++++
Sbjct: 756 FSLLYFINFLISNGYPMKGCELLKEVLQK 784


>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
 gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
 gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
 gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
          Length = 484

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 148/323 (45%), Gaps = 5/323 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  + +M+    +V+ +T  +I+ ++ +   VD AV  FN    +     +  +NSLL 
Sbjct: 120 MWDVVAVMRREG-AVNVETFGIIMRKYARAQKVDEAVYTFNVMEKYGVVPNLAAFNSLLG 178

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ K    A  +  +M  + F PD +TY+IL+  W  +  + + +E   EM D G  P
Sbjct: 179 ALCKSKNVRKAQEIFDKMNSR-FSPDAKTYSILLEGWGRAPNLPKMREVYSEMLDAGCEP 237

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++V  L   G +E A ++V  M  +G       ++ L+ T      +E  V  +
Sbjct: 238 DIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATF 297

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  D+  Y  L+ A  KA   + AFR+L+++   G       +  I+  +   
Sbjct: 298 LDMEKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISL 357

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A+  F  M IK   P+   YTM+I M     +   A      M      P    F
Sbjct: 358 GRDDEAYKVFRRM-IKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ +GL  C K ++++   LLE
Sbjct: 417 SVLINGL--CDKREVSQACVLLE 437



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 107/228 (46%), Gaps = 5/228 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K G V+ AV V    T+  CQ    +Y+ L+           A A    M
Sbjct: 241 TYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDM 300

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G VPD   Y  LV+A+C + K   A   L +M   G     R  ++++  L++ G  
Sbjct: 301 EKDGIVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRD 360

Query: 139 ESAKQMVNKMIK--QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A ++  +MIK  Q    D +T+  +I+  C++ +VE  ++++  +        + T+ 
Sbjct: 361 DEAYKVFRRMIKCCQP---DCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFS 417

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +LI  +     + +A  LL +++E G +P  S +  + + + + G+ D
Sbjct: 418 VLINGLCDKREVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKD 465



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +  M+ + ++ + +T ++I+      G  D A +VF +     CQ     Y  ++  
Sbjct: 329 FRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMIKC-CQPDCDTYTMMIKM 387

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  + + M  K F+P   T+++L+N  C   ++ +A   L++M +KG  PP
Sbjct: 388 FCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQACVLLEDMIEKGIRPP 447

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L Q LL  G  +    +V KM
Sbjct: 448 GSTFGKLRQLLLKEGRKDVLDFLVEKM 474



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  F K    +NA  V N             +N +L  L  +     AY + RRMI K 
Sbjct: 315 LVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILNHLISLGRDDEAYKVFRRMI-KC 373

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY +++  +C + K+  A +  + M  K F P +    +L+ GL +   +  A 
Sbjct: 374 CQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKREVSQAC 433

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE---VEFCVE 178
            ++  MI++G      TF  L + + K G    ++F VE
Sbjct: 434 VLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVE 472


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 131 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 190

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 191 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVD 250

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 251 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 310

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM      
Sbjct: 311 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLK 370

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 371 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 130 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 189

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G + +  TF +LI+  CK+G V
Sbjct: 190 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRV 249

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 250 DLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 309

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  + L
Sbjct: 310 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDL 369

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+ +  +LL+
Sbjct: 370 KPDTGTYTMIINEF--CKKGDVWKGSKLLK 397



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 99  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 158

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M+  G   D+ T++ LI  +CK  +++   
Sbjct: 159 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 218

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 219 ELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 278

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 279 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 338

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G+   AEK+  E+L V L+
Sbjct: 339 VAYTALISGLCQEGRSVDAEKMLREMLSVDLK 370



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + +RM
Sbjct: 200 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRM 259

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 260 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 319

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  + L  D  TY ++
Sbjct: 320 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMI 379

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 380 INEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 417



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 3/246 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG  R+A E  +   +     P      +++ L+   Y +     
Sbjct: 56  SDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 115

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 116 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 175

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   
Sbjct: 176 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVT 235

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-E 323
           +T LI    + GR   A      M    L P    ++ +  GL  C K DL +  +L+ E
Sbjct: 236 FTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLIDE 293

Query: 324 VSLRSV 329
           +S++ +
Sbjct: 294 MSMKGL 299


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 128 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 187

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K  +A E   EM  KG  P       L+ G    G ++
Sbjct: 188 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 247

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 248 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 307

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+   G+  DA     EM   G  
Sbjct: 308 DGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 367

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 368 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 2/239 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 53  SDJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 113 YEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIR 172

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G +P    Y+ +I G  +  + DDA   F EM +KG  PN   
Sbjct: 173 LGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVX 232

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 289



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 37/301 (12%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 58  FSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 117

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 118 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 177

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G                                   +  DV TY +LI
Sbjct: 178 EGFRLKSAMLASG-----------------------------------VQPDVYTYSVLI 202

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K    D+A  L   ++  G  P    +  +I G  + G+ D A   + +M  +   
Sbjct: 203 NGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    + G   +A + + EM+  GL P    +  + DG   C + DL    
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGC--CKEGDLDSAF 320

Query: 320 E 320
           E
Sbjct: 321 E 321


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 134/300 (44%), Gaps = 1/300 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I   G+ GL+D  +EVF++  +    + V  Y +L+ A      +  +  L+ RM  
Sbjct: 145 TIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN 204

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQ-EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
               P   TY  ++NA    G   E       EM  +G  P +   + L+      G  +
Sbjct: 205 DKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A+ +   M   G V DL T++ L+ET  K   +E   ++   +   G   D+++Y +L+
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLL 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A +K+G I EA  + H +   G  P  + Y+ ++    + G++DD    F EMK     
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y +LI + G GG F E      +M E  + P    ++ +       G H+ A KI
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 138/310 (44%), Gaps = 1/310 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S S  + + +I  +G++G  + ++E+ ++         +L YN+++ A     L
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGL 226

Query: 68  -FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
            + G   L   M  +G  PD  TY  L++A    G   EA+   + M+D G  P +    
Sbjct: 227 DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            LV+       LE    ++++M   G + D+ ++N L+E   KSG ++  + +++ +   
Sbjct: 287 HLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + +TY +L+    ++G  D+  +L   +      P  + Y  +I+     G F + 
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F +M  +   P+   Y  +I  CG+GG   +A   L  MT   + P S+ +  V + 
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEA 466

Query: 307 LKNCGKHDLA 316
                 ++ A
Sbjct: 467 FGQAALYEEA 476



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 120/285 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++E FGK   ++   ++ ++  +      +  YN LL A  +      A  +  +M
Sbjct: 284 TYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY++L+N +  SG+  + ++   EM     +P     ++L++     GY 
Sbjct: 344 QAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYF 403

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    + + M+++    D+ET+  +I    K G  E   ++   +    +      Y  +
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGV 463

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  +A + +EA    + + E G  P    Y  ++    R G   ++    S +   G 
Sbjct: 464 IEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSGI 523

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           P NR  +   I    +GG+F EA    V+M +    P  R  + V
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 123/289 (42%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            GL D A  VF           +  Y+ L+    +++       L+  M   G +PD  +
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITS 319

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +L+ A+  SG ++EA     +M   G  P      +L+     +G  +  +Q+  +M 
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                 D  T+N LIE   + G  +  V +++ + +  +  D+ TY+ +I A  K G+ +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A ++L  +  +   P    Y  +I+   +   +++A   F+ M   G  P+   Y  L+
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLL 499

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
               RGG   E+   L  + + G+      F+   +  K  GK + A K
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVK 548



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 1/292 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           ++ MK   +S S  T + +I    + GL  +  + +F +      Q  ++ YN+LL A  
Sbjct: 199 LDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              L   A  + R M   G VPD  TY+ LV  +    ++ +  + L EM+  G  P + 
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDIT 318

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++L++    +G ++ A  + ++M   G   +  T++ L+    +SG  +   +++  +
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
                  D +TY ILI    + G   E   L H++VE+  +P    Y  II    + G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +DA      M      P+   YT +I   G+   + EA      M E+G  P
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N      T +++IE FG+ G     V +F+     N +  +  Y  ++FA  +  L
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M     VP  + Y  ++ A+  +    EA      M + G NP +     
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHS 497

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G ++ ++ ++++++  G   + +TFN+ IE   + G+ E  V+ Y  + K  
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSR 557

Query: 188 LCADVSTYKILIPAVSKAGMIDE 210
              D  T + ++   S A ++DE
Sbjct: 558 CDPDERTLEAVLSVYSFARLVDE 580



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 120/299 (40%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    + +  T S+++  FG+ G  D+  ++F +  + N       YN L+    E   
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     L   M+ +   PD  TY  ++ A    G   +A++ LQ M+     P  +    
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++    A   E A    N M + G    +ET++SL+ +  + G V+    +   +   G
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSG 522

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  T+   I A  + G  +EA +   ++ +    P       ++         D+  
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECR 582

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F EMK     P+   Y M++ + G+  R+ +    L EM    ++ I +    +  G
Sbjct: 583 EQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKG 641



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 55/299 (18%), Positives = 122/299 (40%), Gaps = 14/299 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M   ++  S +  + +IE FG+  L + A+  FN          +  Y+SLL++ 
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSF 502

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
               L   + A++ R++  G   ++ T+   + A+   GK  EA +   +M     +P  
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R  + ++     A  ++  ++   +M     +  +  +  ++    K+   +   E+   
Sbjct: 563 RTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEE 622

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAF-----RLLHNLVEDGHKPFPSLYAPIIKGM 237
           +    L   VS    +I  + K    D++       +L  L  +G       Y  ++  +
Sbjct: 623 M----LSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDAL 678

Query: 238 FRRGQFDDAFCFFSEMKIKGHPP-----NRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           +  GQ + A    +E   +G  P     N+ V+++ +     GG +   + +L +M +M
Sbjct: 679 WWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDMNDM 737



 Score = 42.0 bits (97), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 8/131 (6%)

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y I+I  + + G++D+   +   +   G       Y  +I    R G+++ +      MK
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEA-ANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
                P+   Y  +I  C RGG   E       EM   G+ P     D+VT    L  C 
Sbjct: 204 NDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP-----DIVTYNTLLSACA 258

Query: 312 KHDLAEKIELL 322
              L ++ E++
Sbjct: 259 IRGLGDEAEMV 269


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 132/266 (49%), Gaps = 2/266 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++L AL +  L   A   +  M+R G  P+  TY ILV A C+ G++ EA   + +M 
Sbjct: 121 YNAVLLALSDASL-PSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMR 179

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV 173
             G  P     + LV     AG L+ A+++V+ M ++G    +L TFNS++  +CK+G +
Sbjct: 180 GAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRM 239

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   +++  + + GL  DV +Y  L+    K G + E+  +   + + G  P    +  +
Sbjct: 240 EGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSL 299

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I    + G  + A    ++M+ +G   N   +T LI    + G   +A   + EM + G+
Sbjct: 300 IHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGI 359

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P   C++ + +G    G+ DLA ++
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLAREL 385



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 23/309 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNA---VEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           M+   L ++  T + +I+ F K G +D+A   VE   KC     Q  V+ YN+L+   C+
Sbjct: 319 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKC---GIQPSVVCYNALINGYCK 375

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  LIR M  K   PD  TY+ +++ +C  G +  A +  Q+M  KG  P    
Sbjct: 376 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 435

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L++GL     L  A ++   M++ G   D  T+ +LI+  CK G VE  + ++  + 
Sbjct: 436 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 495

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPS 228
           + G+  DV TY +LI  +SK+    EA RLL  L  +   P                F S
Sbjct: 496 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 555

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + A ++KG   +G   +A   +  M  +    +  VY++LI    RGG   +A ++  +M
Sbjct: 556 VVA-LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 289 TEMGLTPIS 297
              G +P S
Sbjct: 615 LRSGFSPNS 623



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 3/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + ++  F + G +D A  V +      N +  ++ +NS++  LC+     GA  +   
Sbjct: 189 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 248

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+R+G  PD  +Y  L++ +C  G + E+     EM+ +G  P V     L+     AG 
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE A  +V +M ++G  ++  TF +LI+  CK G ++  +     + K G+   V  Y  
Sbjct: 309 LEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNA 368

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G +D A  L+  +     KP    Y+ II G  + G  D AF    +M  KG
Sbjct: 369 LINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKG 428

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y+ LI       R  +A      M ++G+ P    +  + DG  +C + ++ +
Sbjct: 429 VLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG--HCKEGNVEK 486

Query: 318 KIELLEVSLR 327
            + L +  +R
Sbjct: 487 ALSLHDEMIR 496



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 5/312 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++++      G ++ AV V        C    + YN+L+ A C      GA 
Sbjct: 148 VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 207

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++  M  +G   P+  T+  +VN  C +G+M  A++   EM  +G  P V   + L+ G
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L  +  + ++M ++G V D+ TF SLI   CK+G +E  V +   + + GL  +
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+  LI    K G +D+A   +  + + G +P    Y  +I G  + G+ D A     
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ K   P+   Y+ +I+   + G    A     +M + G+ P +  +  +  GL  C 
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL--CE 445

Query: 312 KHDLAEKIELLE 323
           +  L +  EL E
Sbjct: 446 EKRLNDACELFE 457



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 147/311 (47%), Gaps = 5/311 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +S   ++  + K G +  ++ VF++ T       V+ + SL+ A C+      A 
Sbjct: 254 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 313

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL+ +M  +G   ++ T+  L++ +C  G + +A   ++EM   G  P V   + L+ G 
Sbjct: 314 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 373

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A++++ +M  +    D+ T++++I   CK G ++   ++   + K G+  D 
Sbjct: 374 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 433

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   +++A  L  N+++ G +P    Y  +I G  + G  + A     E
Sbjct: 434 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 493

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y++LI    +  R  EA   L ++      P +  +D +   +  C K
Sbjct: 494 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDAL---MLCCSK 550

Query: 313 HDLAEKIELLE 323
            +    + LL+
Sbjct: 551 AEFKSVVALLK 561



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 7/189 (3%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+ P V   + ++  L +A  L SA++ ++ M++ G   ++ T+N L+  +C  G +E  
Sbjct: 113 GYAPSVPAYNAVLLALSDAS-LPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEA 171

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIK 235
           V +   +   G   +  TY  L+ A  +AG +D A R++  + E+G+ KP    +  ++ 
Sbjct: 172 VGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVN 231

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+ + A   F EM  +G  P+   Y  L++   + G   E+     EMT+ GL P
Sbjct: 232 GLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVP 291

Query: 296 ISRCFDLVT 304
                D+VT
Sbjct: 292 -----DVVT 295



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 56/260 (21%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    +   +++A E+F        Q     Y +L+   C+      A +L   M
Sbjct: 435 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 494

Query: 79  IRKGFVPDKRTYAILVNA------------------------------------------ 96
           IRKG +PD  TY++L+N                                           
Sbjct: 495 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFK 554

Query: 97  --------WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
                   +C  G M+EA +  Q M D+ +        +L+ G    G +  A     +M
Sbjct: 555 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 149 IKQGFVLDLETFNSLIETICKSG---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++ GF  +  +  SL+  + + G   E +  ++   + C L   AD    K LI    K 
Sbjct: 615 LRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPL---ADAEASKALIDLNRKE 671

Query: 206 GMIDEAFRLLHNLVEDGHKP 225
           G +D    +L  +  DG  P
Sbjct: 672 GNVDALIDVLCGMARDGLLP 691


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 157/320 (49%), Gaps = 10/320 (3%)

Query: 6   ELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAF-NCQQCVLLYNSLLF 60
           EL+  Y   + SP    +I++ + + GL  NA+ VF+   KC    + + C    NSLL 
Sbjct: 144 ELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSC----NSLLN 199

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +    H A+ + ++MIR G VPD    +I+VNA+C  GK+ EA  F+++M + G  P
Sbjct: 200 NLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEP 259

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     L+ G ++ G +E+AK ++  M ++G   ++ T+  LI+  CK  +++   ++ 
Sbjct: 260 NIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVL 319

Query: 181 YSVC-KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
             +  +  L  D   Y +LI    + G ID+A RLL  ++  G K    +   +I G  +
Sbjct: 320 RGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCK 379

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           RG+  +A    + M      P+   Y  L+    R G   EA N   +M + G+ P    
Sbjct: 380 RGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLT 439

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ +  GL   G  D A +I
Sbjct: 440 YNTLLKGLCRVGAFDDALQI 459



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 37/335 (11%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +   ++I+ + + G +D+AV + ++      +  + + NSL+   C+    H A  +I R
Sbjct: 333 RAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITR 392

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+     PD  +Y  L++ +C  G   EA     +M  +G  P V   + L++GL   G 
Sbjct: 393 MVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGA 452

Query: 138 LESAKQMVNKMIK-----------------------------------QGFVLDLETFNS 162
            + A Q+ + M+K                                   +GF     TFN+
Sbjct: 453 FDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNT 512

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I  +CK G++    E++  +  LG   D  TY+ LI    KA  + +AF++   +  + 
Sbjct: 513 MISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREX 572

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P   +Y  +I G+F+  +  +     +EM I+G  PN   Y  LI    + G   +A 
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 283 NYLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLA 316
           +   EMTE GL+  I  C  +V+ GL   G+ D A
Sbjct: 633 SSYFEMTENGLSANIIICSTMVS-GLYRLGRIDEA 666



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 138/298 (46%), Gaps = 3/298 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           NL V P   T   +I  +   G V+ A  V    +     + V+ Y  L+   C+     
Sbjct: 254 NLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMD 313

Query: 70  GAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
            A  ++R M  +   VPD+R Y +L++ +C +GK+ +A   L EM   G    +   + L
Sbjct: 314 EAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSL 373

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G +  A+ ++ +M+      D  ++N+L++  C+ G       +   + + G+
Sbjct: 374 INGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGI 433

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
              V TY  L+  + + G  D+A ++ H +++ G  P    Y+ ++ G+F+   F+ A  
Sbjct: 434 EPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGAST 493

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            + ++  +G   +R  +  +I+   + G+ VEA     +M ++G +P    +  + DG
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDG 551



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 143/354 (40%), Gaps = 36/354 (10%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K  +L  SP   T   +I+ + K   V  A +V            + +YNSL+  L + +
Sbjct: 532 KMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSR 591

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
                  L+  M  +G  P+  TY  L++ WC  G + +A     EM++ G +  +    
Sbjct: 592 RLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICS 651

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF-------------------------- 160
            +V GL   G ++ A  ++ KM+  GF  D E F                          
Sbjct: 652 TMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLL 711

Query: 161 ------NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
                 N  I  +CK+G+V+     +  +   G   D  TY  LI   S AG +DEAFRL
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              ++  G  P    Y  +I G+ +    D A   F ++  KG  PN   Y  LI    +
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCK 831

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            G    A     +M E G++P    +  + +GL  C   D+   ++LL   +++
Sbjct: 832 IGNMDAAFKLKDKMIEEGISPSVVTYSALINGL--CKHGDIERSMKLLNQMIKA 883



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 128/296 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M  +NL     + + +++ + + G    A  + +K      +  VL YN+LL  LC 
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V  F  A  +   M++ G  PD+  Y+ L++          A    +++  +GF      
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRIT 509

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL   G +  A+++ +KM   G   D  T+ +LI+  CK+  V    ++  ++ 
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +   +  Y  LI  + K+  + E   LL  +   G  P    Y  +I G  + G  D
Sbjct: 570 REXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLD 629

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            AF  + EM   G   N  + + +++   R GR  EA   + +M + G  P   CF
Sbjct: 630 KAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECF 685



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 101/193 (52%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++YN  +  LC+      A      +  KGFVPD  TY  L++ + ++G + EA     E
Sbjct: 715 IVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDE 774

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +G  P +   + L+ GL  +  ++ A+++ +K+ ++G   ++ T+N+LI+  CK G 
Sbjct: 775 MLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGN 834

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++   ++   + + G+   V TY  LI  + K G I+ + +LL+ +++ G       Y  
Sbjct: 835 MDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCT 894

Query: 233 IIKGMFRRGQFDD 245
           +++G F+   +++
Sbjct: 895 LVQGGFKTSNYNE 907



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 145/352 (41%), Gaps = 44/352 (12%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL-----YNSLL 59
           ++ M    +S +  T +L+I+ + K   +D A +V         ++  L+     Y  L+
Sbjct: 284 LKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ----EEAALVPDERAYGVLI 339

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C       A  L+  M+R G   +      L+N +C  G++ EA+  +  M D    
Sbjct: 340 DGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLK 399

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     + L+ G    G+   A  + +KM+++G    + T+N+L++ +C+ G  +  +++
Sbjct: 400 PDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQI 459

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           ++ + K G+  D   Y  L+  + K    + A  L  +++  G       +  +I G+ +
Sbjct: 460 WHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCK 519

Query: 240 RGQ-------FD------------------DAFCFFSEM----KIKGH------PPNRPV 264
            G+       FD                  D +C  S +    K+KG        P+  +
Sbjct: 520 MGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEM 579

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           Y  LI+   +  R VE  + L EM   GLTP    +  + DG    G  D A
Sbjct: 580 YNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKA 631


>gi|15219046|ref|NP_175671.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207557|sp|Q9SSR4.1|PPR77_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g52620
 gi|5903044|gb|AAD55603.1|AC008016_13 Contains 3 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332194709|gb|AEE32830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 125/277 (45%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   ++ YN+++   C++     AY + + +  KGF+P   T+  ++N +C  G    + 
Sbjct: 236 CIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASD 295

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L E+ ++G    V   + ++      GY     + +  +I      D+ T+N LI  +
Sbjct: 296 RLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRL 355

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+ E  V       K GL  +  +Y  LI A  K+   D A +LL  + E G KP  
Sbjct: 356 CKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDI 415

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G+   G  DDA     ++  +G  P+  +Y ML++   + GRF+ A     E
Sbjct: 416 VTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSE 475

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           M +  + P +  +  + DG    G  D A K+  L V
Sbjct: 476 MLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSV 512



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K   L VS   L+ II+   +HG   +  E      A +C+  V  YN L+  LC+   
Sbjct: 301 VKERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGK 360

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +    +KG +P+  +YA L+ A+C S +   A + L +M+++G  P +    +
Sbjct: 361 KEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGI 420

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL+ +G+++ A  M  K+I +G   D   +N L+  +CK+G       ++  +    
Sbjct: 421 LIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRN 480

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D   Y  LI    ++G  DEA ++    VE G K     +  +IKG  R G  D+A 
Sbjct: 481 ILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEAL 540

Query: 248 CFFSEMKIKGHPPNRPVYTMLI 269
              + M  +   P++  Y+ +I
Sbjct: 541 ACMNRMNEEHLVPDKFTYSTII 562



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 125/277 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G  + AV   ++ +        L Y  L+ A C+ K +  A  L+ +M
Sbjct: 347 TYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQM 406

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY IL++    SG M +A     ++ D+G +P     ++L+ GL   G  
Sbjct: 407 AERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRF 466

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK + ++M+ +  + D   + +LI+   +SG+ +   +++    + G+  DV  +  +
Sbjct: 467 LPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAM 526

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    ++GM+DEA   ++ + E+   P    Y+ II G  ++     A   F  M+    
Sbjct: 527 IKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKC 586

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   YT LI      G F  A     EM    L P
Sbjct: 587 KPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVP 623



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 5/279 (1%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P NLS +P     +I+ + K    D A ++  +     C+  ++ Y  L+  L       
Sbjct: 378 PNNLSYAP-----LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMD 432

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +  ++I +G  PD   Y +L++  C +G+   A+    EM D+   P       L+
Sbjct: 433 DAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLI 492

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G + +G  + A+++ +  +++G  +D+   N++I+  C+SG ++  +     + +  L 
Sbjct: 493 DGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLV 552

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  +I    K   +  A ++   + ++  KP    Y  +I G   +G F  A   
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEET 612

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           F EM+++   PN   YT LI    +    +E A Y  E+
Sbjct: 613 FKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWEL 651



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 15/256 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+ F + G  D A +VF+       +  V+ +N+++   C   +   A A + RM  
Sbjct: 489 ATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNE 548

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +  VPDK TY+ +++ +     M  A +  + M      P V     L+ G    G  + 
Sbjct: 549 EHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKM 608

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCV--------------EMYYSVCK 185
           A++   +M  +  V ++ T+ +LI ++ K S  +E  V              E+ ++   
Sbjct: 609 AEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLL 668

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G     S   +  P  S  G         H +  DG     + Y   +  +   G    
Sbjct: 669 QGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKT 728

Query: 246 AFCFFSEMKIKGHPPN 261
           A  F  +M  KG  P+
Sbjct: 729 ACMFQDKMVKKGFSPD 744



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 15/229 (6%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F + G++D A+   N+    +       Y++++    + +    A  + R M +  
Sbjct: 526 MIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNK 585

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN-AGYLESA 141
             P+  TY  L+N +C  G  + A+E  +EM  +   P V     L++ L   +  LE A
Sbjct: 586 CKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVVTYTTLIRSLAKESSTLEKA 645

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKS--------------GEVEFCVEMYYSVCKLG 187
                 M+    V +  TFN L++   K               G+     E ++ +   G
Sbjct: 646 VYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSNHGQSSLFSEFFHRMKSDG 705

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
                + Y   +  +   GM+  A      +V+ G  P P  +A I+ G
Sbjct: 706 WSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVSFAAILHG 754



 Score = 42.0 bits (97), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           HG      E F++  +         YNS L  LC   +   A     +M++KGF PD  +
Sbjct: 688 HGQSSLFSEFFHRMKSDGWSDHAAAYNSALVCLCVHGMVKTACMFQDKMVKKGFSPDPVS 747

Query: 90  YAILVNAWCSSGKMREAQEF-LQEMSDKGFNPPVRGRDLLVQGL 132
           +A +++ +C  G  ++ +      + +KG    VR   +L Q L
Sbjct: 748 FAAILHGFCVVGNSKQWRNMDFCNLGEKGLEVAVRYSQVLEQHL 791


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF++ T +  +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM   G  P       L+ G    G ++
Sbjct: 199 GSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSID 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +   +M++QGF  DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF+    ++++  +     Y  +I G+ R GQ   A     EM   G  
Sbjct: 319 DGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G     +  L EM   G  P
Sbjct: 379 PDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 135/317 (42%), Gaps = 2/317 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L + +   V   T   ++E F K     +    + +         +  +N L+   C+  
Sbjct: 91  LTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEG 150

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A ++   + + G  P   ++  L+N +   G + E       M   G  P V    
Sbjct: 151 EMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYS 210

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+ GL     +  A ++ ++MI  G V +  TF +LI+  CK+G ++  +E Y  + + 
Sbjct: 211 VLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQ 270

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   D+ TY  LI  + K G + +A  L+  +   G KP    Y  +I G  + G  + A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           F +   M  +    +   YT LI+   R G+ V A   L EM  +GL P +  + ++ + 
Sbjct: 331 FKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINE 390

Query: 307 LKNCGKHDLAEKIELLE 323
              C K D+    +LL+
Sbjct: 391 F--CKKGDVKMGSKLLK 405



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 114/250 (45%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + + G +D    + +       Q  V  Y+ L+  LC+    + 
Sbjct: 165 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMND 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI  G VP+  T+  L++  C +G +  A E  +EM  +GF+P +   + L+ 
Sbjct: 225 ANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   +    + K  +  
Sbjct: 285 GLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G    A ++L  ++  G KP    Y  II    ++G         
Sbjct: 345 DDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLL 404

Query: 251 SEMKIKGHPP 260
            EM+  GH P
Sbjct: 405 KEMQRDGHVP 414



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 111/245 (45%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG + +A E  +   +  F  P      +++  +   Y +S     
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK GE+     ++  + K GL   V ++  L+    + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    Y+ +I G+ +  + +DA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + G    A     EM   G +P    ++ +  GL  C + DL +  +L+ E+
Sbjct: 245 TTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGL--CKEGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A +   +    N +   + Y +L+  LC 
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCR 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                GA  ++R M+  G  PD  TY +++N +C  G ++   + L+EM   G  P V
Sbjct: 359 EGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCV 416


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 139/306 (45%), Gaps = 38/306 (12%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S + + L L     G+H     AVE F++   F+C+    +YN++   L +  +   A A
Sbjct: 144 SAAFRALVLAHSSAGRH---QEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALA 200

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L  RM+  G +P+  TY +L++  C  G   +A +   EM ++G  P V+   +L+  L 
Sbjct: 201 LYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLC 260

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           N G +E A +++  M + G               C   EV       Y+V   GLC    
Sbjct: 261 NEGRIEDAGRLLCSMKENG---------------CPPDEVT------YTVFLSGLC---- 295

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
                     KAG +DEAF     L + G       Y+ +I G+F+ G+FD+   +++EM
Sbjct: 296 ----------KAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEM 345

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             K   P+  +YT+LI      GR  +A   L EM + G  P + C++ +   L + G  
Sbjct: 346 LGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNI 405

Query: 314 DLAEKI 319
           D A+ +
Sbjct: 406 DRAQSL 411



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 17/290 (5%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+SP     +++I  F + G   +A  + ++            YN+LL AL +V     A
Sbjct: 349 SISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRA 408

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +L+  M++   V D  T+ I++   C  G + +A +   EM + G +P V   + L+ G
Sbjct: 409 QSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDG 468

Query: 132 LLNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           L  AG LE A+ + +KM             +    V D E+   L++ +C+SG+V    +
Sbjct: 469 LYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYK 528

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G+  DV TY  LI  + KA  +D A RL   L   G  P    Y  +I G++
Sbjct: 529 LLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLW 588

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE 287
           R  + +DA   F  +   G  P+ P+Y TM+ ++C R  +  +A N  ++
Sbjct: 589 RAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLC-RMKKLSQAINLWLD 637



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 127/282 (45%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            G++  A+ ++N+  +  C      Y  L+  LC+  +   A  +   M+ +G VPD + 
Sbjct: 192 RGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKI 251

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +L+++ C+ G++ +A   L  M + G  P      + + GL  AG ++ A      + 
Sbjct: 252 YTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQ 311

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             GF L L  ++ LI+ + ++G  +  +  Y  +    +  D++ Y ILI   ++AG   
Sbjct: 312 DGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTK 371

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +AF LL  + + G  P    Y  ++K +F  G  D A    SEM       +   + ++I
Sbjct: 372 DAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMI 431

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
               + G   +A     EM E G  P    ++ + DGL   G
Sbjct: 432 CGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAG 473



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 19/305 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ +    K G VD A   F           ++ Y+ L+  L +   F    +    M
Sbjct: 286 TYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEM 345

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD   Y IL+  +  +G+ ++A   L EM DKGF P     + L++ L + G +
Sbjct: 346 LGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNI 405

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+ ++++M++   VLD  T N +I  +CK G ++  ++++  + + G    V TY  L
Sbjct: 406 DRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNAL 465

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY----------------APIIKGMFRRGQ 242
           I  + +AGM++EA  L H + E G+   PSL+                  ++ GM + GQ
Sbjct: 466 IDGLYRAGMLEEARMLFHKM-EMGNN--PSLFLRLTLGANQVRDTESLRKLVDGMCQSGQ 522

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
              A+     +   G  P+   Y  LI    +      A     E+   G++P    +  
Sbjct: 523 VLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGT 582

Query: 303 VTDGL 307
           + DGL
Sbjct: 583 LIDGL 587



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 162/375 (43%), Gaps = 59/375 (15%)

Query: 11  YNLSVS----PQTLSLIIEEFG--KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           YN  VS    P + + I+   G  K G+  +A+++F++         V +Y  LL +LC 
Sbjct: 202 YNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLCN 261

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M   G  PD+ TY + ++  C +G++ EA    + + D GF   + G
Sbjct: 262 EGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIG 321

Query: 125 RDLLVQGLLNAG------------------------------YLESAKQ-----MVNKMI 149
              L+ GL  AG                              + E+ +      ++++M 
Sbjct: 322 YSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMK 381

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +GFV D   +N+L++ +   G ++    +   + +  +  D +T+ I+I  + K G+ID
Sbjct: 382 DKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLID 441

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP--------- 260
           +A ++   + E G  P    Y  +I G++R G  ++A   F +M++  +P          
Sbjct: 442 KAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGA 501

Query: 261 -----NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                   +  ++  MC + G+ ++A   L  + E G+ P    ++ + +GL  C   +L
Sbjct: 502 NQVRDTESLRKLVDGMC-QSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGL--CKAKNL 558

Query: 316 AEKIELL-EVSLRSV 329
              + L  E+ L+ +
Sbjct: 559 DGALRLFKELQLKGI 573



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 103/214 (48%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G       +  LV A  S+G+ +EA E    M D    P     + + Q L++ G +  A
Sbjct: 139 GLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLA 198

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + N+M+  G + +  T+  L++ +CK G     ++M+  + + G+  DV  Y +L+ +
Sbjct: 199 LALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSS 258

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +   G I++A RLL ++ E+G  P    Y   + G+ + G+ D+AF  F  ++  G    
Sbjct: 259 LCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLG 318

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              Y+ LI    + GRF E  +Y  EM    ++P
Sbjct: 319 LIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISP 352



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/290 (21%), Positives = 112/290 (38%), Gaps = 53/290 (18%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK----- 66
           N+ +   T +++I    K GL+D A++VF++     C   V+ YN+L+  L         
Sbjct: 419 NVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEA 478

Query: 67  --LFHG-----------------------------------------AYALIRRMIRKGF 83
             LFH                                          AY L+R +I  G 
Sbjct: 479 RMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGV 538

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           VPD  TY  L+N  C +  +  A    +E+  KG +P       L+ GL  A     A  
Sbjct: 539 VPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATM 598

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +   +++ G    L  +N+++ ++C+  ++   + ++     L    ++S    +I    
Sbjct: 599 LFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDY--LPKKYNLSPEDEVIANAR 656

Query: 204 KA---GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           K    G +DE  + L  + +      P+ Y   + G+ +  + DDA   F
Sbjct: 657 KCFEDGFLDETVKELIKIDQVYGSLNPNPYTIWVIGLCQVRKIDDALRIF 706


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 133/283 (46%), Gaps = 16/283 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ ++  LC+      A++L   M R G VP   TY IL++++C +G +++A+++  EM 
Sbjct: 463 YSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEML 522

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P V     L+   L A  +  A ++   M+ +G   ++ T+ +LI+  CK+G++E
Sbjct: 523 HKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582

Query: 175 FCVEMY--------------YSVCKLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              ++Y              Y       C   +V TY  L+  + KA  + EA  LL  +
Sbjct: 583 KACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTM 642

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +  G +P   +Y  +I G  + G+  DA   F++M  +G+ PN   Y+  I    +  R 
Sbjct: 643 LAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRL 702

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
                 L +M E   TP    +  + DGL   GK D A K+ L
Sbjct: 703 DLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLML 745



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 142/306 (46%), Gaps = 16/306 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +  S  T +++I+ F K GL+  A + F++     C   V+ Y +L+ A  + 
Sbjct: 484 EEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKA 543

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS--------DKG 117
           K    A  L   M+ +G  P+  TY  L++  C +G++ +A +    M         DK 
Sbjct: 544 KQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKY 603

Query: 118 FN--------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           F         P V     LV GL  A  ++ A ++++ M+  G   +   ++++I+  CK
Sbjct: 604 FKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCK 663

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G+++   E++  + + G   ++ TY   I  + K   +D   ++L  ++E+   P   +
Sbjct: 664 IGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVI 723

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  ++ G+ + G+ D+A+    +M+ KG  PN   YT +I   G+ G+  +      +M 
Sbjct: 724 YTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMC 783

Query: 290 EMGLTP 295
             G  P
Sbjct: 784 SKGCAP 789



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 130/329 (39%), Gaps = 43/329 (13%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K +    S  T + +I+ F +   +D A  V  +  ++         +   ++LC+   
Sbjct: 202 LKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGK 261

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ LI     + FVPD   Y  +V+  C +    EA + L  M      P V    +
Sbjct: 262 CREAFDLIDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRI 319

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G L  G L   K++++ MI +G   + E FNSLI   CKS +  +  +++  + K G
Sbjct: 320 LLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCG 379

Query: 188 LCADVSTYKILIPAVSK-----------------------------------------AG 206
                  Y I I +V                                           AG
Sbjct: 380 CQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAG 439

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
             D+AF+++  ++  G  P  S Y+ +I  +    + + AF  F EMK  G  P+   YT
Sbjct: 440 KFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYT 499

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +LI    + G   +A  +  EM   G TP
Sbjct: 500 ILIDSFCKAGLIQQARKWFDEMLHKGCTP 528



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 124/296 (41%), Gaps = 16/296 (5%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  +F +         V  Y  L+ + C+  L   A      M+ KG  P+  TY  
Sbjct: 476 VEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTA 535

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM---- 148
           L++A+  + +M  A E  + M  +G  P V     L+ G   AG +E A Q+  +M    
Sbjct: 536 LIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDI 595

Query: 149 ----IKQGFVLDLE--------TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
               + + F LD          T+ +L++ +CK+  V+   E+  ++   G   +   Y 
Sbjct: 596 ESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYD 655

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I    K G + +A  +   + E G+ P    Y+  I  +F+  + D      S+M   
Sbjct: 656 AVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLEN 715

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              PN  +YT ++    + G+  EA   +++M E G  P    +  + DG    GK
Sbjct: 716 SCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGK 771



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 133/322 (41%), Gaps = 28/322 (8%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE---------VKLFHGAYA 73
           +I  + K      A ++F K     CQ   L+YN  + ++C          + L   AY+
Sbjct: 355 LIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYS 414

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
               M+  G V +K   +      C +GK  +A + + EM  KGF P       ++  L 
Sbjct: 415 ---EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLC 471

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           +A  +E A  +  +M + G V  + T+  LI++ CK+G ++   + +  +   G   +V 
Sbjct: 472 DASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVV 531

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI A  KA  +  A  L   ++ +G KP    Y  +I G  + GQ + A   ++ M
Sbjct: 532 TYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARM 591

Query: 254 K--IKGHP--------------PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           +  I+                 PN   Y  L+    +  R  EA   L  M   G  P  
Sbjct: 592 RGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQ 651

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             +D V DG    GK   A+++
Sbjct: 652 IVYDAVIDGFCKIGKLQDAQEV 673



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 4/210 (1%)

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           +R    LV   C +G    A E L  + D G+ P     + L+Q  L A  L++A  +  
Sbjct: 176 RRLLNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKR 235

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYKILIPAVSKA 205
           +M+   FV+D  T +    ++CK G+   C E +  + +      D   Y  ++  + +A
Sbjct: 236 EMLSYAFVMDRYTLSCFAYSLCKGGK---CREAFDLIDEAEDFVPDTVFYNRMVSGLCEA 292

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
            + +EA  +LH +      P    Y  ++ G  R+GQ        S M  +G  PNR ++
Sbjct: 293 SLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIF 352

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             LI    +   +  A     +M + G  P
Sbjct: 353 NSLIHAYCKSRDYSYAYKLFKKMIKCGCQP 382



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 100/227 (44%), Gaps = 4/227 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++   K G  D A ++  K     C   V+ Y +++    +         L R M  KG
Sbjct: 727 MVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG 786

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY +L+N  CS+G + EA + L EM    +   +     +++G   +    ++ 
Sbjct: 787 CAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFITSI 844

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK--LGLCADVSTYKILIP 200
            +++++ +   V     +  LI+   K+G +E  +++   +        ++   Y  LI 
Sbjct: 845 GLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIE 904

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
            +S A  +D+A  L  +++     P  S+   +IKG+ +  ++ +A 
Sbjct: 905 NLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEAL 951


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 159/333 (47%), Gaps = 13/333 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++  Y ++    T +++I  F  +G+VD+   +FN  + F C+  V+ YN+L+  LC  
Sbjct: 209 EMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRA 268

Query: 66  KLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                AY +++ M +K     P+  TY  L+  +C+  ++ +A    +EM ++G      
Sbjct: 269 GKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNI 328

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L++GL  A   E  K ++      G F  D  TFN+L+   C +G ++  ++++  
Sbjct: 329 TYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFER 388

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-------DGHKPFPSLYAPIIK 235
           + +L +  D +TY  L+ ++ + G  ++A  LL  L+E       DG KP  + Y PI K
Sbjct: 389 MSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFK 448

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A   F ++  +G   + P Y  LI    + G F      LV M      P
Sbjct: 449 YLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLP 507

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               ++ + +GL +  K  LA  ++ LE  LRS
Sbjct: 508 DFETYESLINGLLHMDKPLLA--LQSLEKMLRS 538



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 137/310 (44%), Gaps = 17/310 (5%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK- 81
           ++  F + GL   +++VF    +      V+ +NSLL  L +    + A  +   M+   
Sbjct: 155 LMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTY 214

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD  T+ IL+  +C +G + +      ++S  G  P V   + LV GL  AG +  A
Sbjct: 215 GVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKVTVA 274

Query: 142 KQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
             +V  M K+   L  ++ T+ +LI   C   E+E  + ++  +   GL A+  TY  LI
Sbjct: 275 YNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANNITYNTLI 334

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFF---SEMKI 255
             + +A   ++   +L     DG   P    +  ++      G  DDA   F   SE+KI
Sbjct: 335 KGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKI 394

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM-------GLTPISRCFDLVTDGLK 308
           +   P+   Y+ L+    +GG + +A + L ++ E        G  P+   ++ +   L 
Sbjct: 395 Q---PDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAYNPIFKYLC 451

Query: 309 NCGKHDLAEK 318
             GK   AEK
Sbjct: 452 ETGKTKKAEK 461



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 8/228 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-------TAFNCQQCVLLY 55
           K  E M    +     T S ++    + G  + A ++ +K        +   C+  V  Y
Sbjct: 384 KVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAY 443

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +   LCE      A    R+++R+G   D  +Y  L+   C  G      E L  M  
Sbjct: 444 NPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELLVLMLR 502

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           K F P     + L+ GLL+      A Q + KM++     +  TF+S++  + + G    
Sbjct: 503 KDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSE 562

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
              +   +    +  ++S     +  +  AGM D+AF+L+H L   G+
Sbjct: 563 SASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGY 610



 Score = 43.5 bits (101), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 38/203 (18%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA------------------ 96
           Y +L+   C+   F   Y L+  M+RK F+PD  TY  L+N                   
Sbjct: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKML 536

Query: 97  -----------------WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                                G+  E+   +Q M DK     +      V+ L  AG  +
Sbjct: 537 RSSHRPNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMND 596

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A Q+V+ +  +G+ + +E    LI  +C   +V    ++     +     D+     +I
Sbjct: 597 KAFQLVHLLYGKGYSVKME---ELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVI 653

Query: 200 PAVSKAGMIDEAFRLLHNLVEDG 222
             + +   + EAF L + LVE G
Sbjct: 654 FQLCEINKLSEAFSLYYKLVEMG 676


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 2/307 (0%)

Query: 12   NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            NL + P  ++ + +++        + A+E+F    +         YN LL A  + K  +
Sbjct: 789  NLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRIN 848

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              Y L   M  +G  P+  T+ I+++A   S  + +A +   E+    F+P       L+
Sbjct: 849  KLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLI 908

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             GLL AG  E A ++  +M+  G   +   +N LI    KSGE++F  E++  + K G+ 
Sbjct: 909  DGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIR 968

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             D+ +Y IL+  +   G IDEA +    L   G  P    Y  II G+ +  + D+A   
Sbjct: 969  PDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSL 1028

Query: 250  FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            FSEMK +G  P+   Y  LI   G  G+   A     E+  +GL P    ++ +  G   
Sbjct: 1029 FSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSL 1088

Query: 310  CGKHDLA 316
             G  D A
Sbjct: 1089 SGNKDQA 1095



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 143/314 (45%), Gaps = 5/314 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MKP     S +T S ++   G+ G     + +  +  +   +  +  Y   + AL   
Sbjct: 229 EGMKP-----SMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRA 283

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A+ + + M  +G  PD  TY +L++A C++GK+ +A+E   +M     +P     
Sbjct: 284 RRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTY 343

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+      G LE+ K+  N+M   G+  D+ T+  LIE +CKSG+V+   +M   +  
Sbjct: 344 ITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTT 403

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  ++ TY  +I  + KA  +DEA  LL N+   G KP    Y   I    + G    
Sbjct: 404 KGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAK 463

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  MK +G  P+       +      GR  EA +   ++ + GL+P S  ++++  
Sbjct: 464 AIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMK 523

Query: 306 GLKNCGKHDLAEKI 319
                G+ D A ++
Sbjct: 524 CYSKAGQIDKATQL 537



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 14  SVSPQTLSLI--IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S SP  ++ I  +++FGK G ++     +N+         V+ Y  L+ ALC+      A
Sbjct: 335 SHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRA 394

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + ++  M  KG  P+  TY  ++     + ++ EA E L+ M   G  P      L +  
Sbjct: 395 FDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDY 454

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              +G    A      M K+G +  +   N+ + T+ ++G +    +++  + K GL  D
Sbjct: 455 YGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPD 514

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY +L+   SKAG ID+A +LL  ++  G +P   +   +I  +++ G+ D A+  F 
Sbjct: 515 SVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFG 574

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            +K     P    Y +L+T  G+ G+ ++A      MTE G  P +  F+ + D L    
Sbjct: 575 RLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKND 634

Query: 312 KHDLAEKI 319
             DLA K+
Sbjct: 635 AVDLALKM 642



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 139/295 (47%)

Query: 6    ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            E MK      +  T +L+++  GK   ++   +++++  +  C+   + +N ++ AL + 
Sbjct: 820  EDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKS 879

Query: 66   KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               + A  L   ++   F P   TY  L++    +G+  +A +  +EM D G  P     
Sbjct: 880  NNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIY 939

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            ++L+ G   +G ++ A ++  KM+K+G   DL+++  L+E +C +G ++  V+ +  +  
Sbjct: 940  NILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKL 999

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             GL  D  +Y  +I  + K+  +DEA  L   +   G  P    Y  +I  +   G+ D 
Sbjct: 1000 TGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDV 1059

Query: 246  AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            A   + E+++ G  P+   Y  LI      G   +A +   +M  +G +P +  F
Sbjct: 1060 AVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETF 1114



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 122/242 (50%), Gaps = 1/242 (0%)

Query: 6    ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            ELM   + S +P T   +I+   K G  + A+++F +   + C    ++YN L+    + 
Sbjct: 891  ELMSG-DFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKS 949

Query: 66   KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A  L ++M+++G  PD ++Y ILV   C +G++ EA ++ +E+   G +P     
Sbjct: 950  GEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSY 1009

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            + ++ GL  +  L+ A  + ++M  +G   DL T+N+LI  +  +G+V+  V+MY  +  
Sbjct: 1010 NFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQL 1069

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            +GL   V TY  LI   S +G  D+AF +   ++  G  P    +A +     R G   +
Sbjct: 1070 VGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHN 1129

Query: 246  AF 247
             F
Sbjct: 1130 PF 1131



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 139/315 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   L  +  T ++ I   G+   +D+A  +F +     C   V+ Y  L+ ALC 
Sbjct: 258 LEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCA 317

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L  +M      PD+ TY  L++ +   G +   + F  EM   G+ P V  
Sbjct: 318 AGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVT 377

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L++ L  +G ++ A  M++ M  +G   +L T+N++I  + K+  ++  +E+  ++ 
Sbjct: 378 YTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENME 437

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+     +Y + I    K+G   +A      + + G  P  +     +  +   G+  
Sbjct: 438 SLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRIS 497

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+++   G  P+   Y ML+    + G+  +A   L EM   G  P     + + 
Sbjct: 498 EAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLI 557

Query: 305 DGLKNCGKHDLAEKI 319
           + L   G+ D A K+
Sbjct: 558 NTLYKAGRVDAAWKM 572



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%), Gaps = 3/278 (1%)

Query: 12  NLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           +L V P   S  L I+ +GK G    A++ F           +   N+ L+ L E     
Sbjct: 438 SLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRIS 497

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +   + + G  PD  TY +L+  +  +G++ +A + L EM  KG  P V   + L+
Sbjct: 498 EAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLI 557

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L  AG +++A +M  ++        + T+N L+  + K G++   +E++ S+ + G  
Sbjct: 558 NTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCP 617

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  T+  L+  +SK   +D A ++   +      P    Y  II G+ R G+ D AF F
Sbjct: 618 PNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWF 677

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           F +MK K   P+      LI    R GR  +A   ++E
Sbjct: 678 FHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVME 714



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 1/286 (0%)

Query: 35   NAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
            +A  VF+K T        +  YN L+  L        A  L   M   G  P+  TY +L
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 94   VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
            ++A   S ++ +  +   EM  +G  P     ++++  L+ +  L  A  +  +++   F
Sbjct: 838  LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897

Query: 154  VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                 T+  LI+ + K+G  E  ++++  +   G   +   Y ILI    K+G ID A  
Sbjct: 898  SPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACE 957

Query: 214  LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
            L   +V++G +P    Y  +++ +   G+ D+A  +F E+K+ G  P+   Y  +I   G
Sbjct: 958  LFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLG 1017

Query: 274  RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +  R  EA +   EM   G++P    ++ +   L   GK D+A K+
Sbjct: 1018 KSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKM 1063



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 123/270 (45%), Gaps = 1/270 (0%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A++V+ +  +   +  +  Y++L+ AL           L+  M   G  P+  TY
Sbjct: 214 GFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTY 273

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I + A   + ++ +A    +EM D+G  P V    +L+  L  AG L+ AK++  KM  
Sbjct: 274 TICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRA 333

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                D  T+ +L++   K G++E     +  +   G   DV TY ILI A+ K+G +D 
Sbjct: 334 SSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDR 393

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           AF +L  +   G  P    Y  +I G+ +  + D+A      M+  G  P    Y + I 
Sbjct: 394 AFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFID 453

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTP-ISRC 299
             G+ G   +A +    M + G+ P I+ C
Sbjct: 454 YYGKSGDPAKAIDTFETMKKRGIMPSIAAC 483



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 2/254 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  + +RMI +G  P  +TY+ L+ A    G  R+    L+EM   G  P +    + ++
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIR 278

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L  A  ++ A  +  +M  +G   D+ T+  LI+ +C +G+++   E+Y  +       
Sbjct: 279 ALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  TY  L+    K G ++   R  + +  DG+ P    Y  +I+ + + G  D AF   
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML 398

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             M  KG  PN   Y  +I    +  R  EA   L  M  +G+ P +  + L  D     
Sbjct: 399 DVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKS 458

Query: 311 GKHDLAEKIELLEV 324
           G  D A+ I+  E 
Sbjct: 459 G--DPAKAIDTFET 470



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 125/298 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++IE   K G VD A ++ +  T       +  YN+++  L + +    A  L+  M
Sbjct: 377 TYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM 436

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   +Y + ++ +  SG   +A +  + M  +G  P +   +  +  L   G +
Sbjct: 437 ESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRI 496

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + N + K G   D  T+N L++   K+G+++   ++   +   G   DV     L
Sbjct: 497 SEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSL 556

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +D A+++   L      P    Y  ++ G+ + G+   A   F  M   G 
Sbjct: 557 INTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGC 616

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PPN   +  L+    +      A      MT M   P    ++ +  GL   G+ D A
Sbjct: 617 PPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYA 674



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 116/258 (44%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T ++II    K   ++ A++++ +  + +       Y  L+  L +      A  +   M
Sbjct: 868  THNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEM 927

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +  G  P+   Y IL+N +  SG++  A E  ++M  +G  P ++   +LV+ L   G +
Sbjct: 928  LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRI 987

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            + A Q   ++   G   D  ++N +I  + KS  ++  + ++  +   G+  D+ TY  L
Sbjct: 988  DEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNAL 1047

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  +  AG +D A ++   L   G +P    Y  +I+G    G  D AF  F +M + G 
Sbjct: 1048 ILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGC 1107

Query: 259  PPNRPVYTMLITMCGRGG 276
             PN   +  L     R G
Sbjct: 1108 SPNTETFAQLPNKYPRAG 1125



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/355 (20%), Positives = 139/355 (39%), Gaps = 38/355 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L+ +  T ++++   GK G +  A+E+F   T   C    + +NSLL  
Sbjct: 570 WKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDC 629

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  +  RM      PD  TY  ++      G++  A  F  +M  K  +P 
Sbjct: 630 LSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMK-KFLSPD 688

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMY 180
                 L+ G++  G +E A ++V + + Q     + + +  L+E I    E+E  +   
Sbjct: 689 YVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFA 748

Query: 181 -----YSVCK-------------------------------LGLCADVSTYKILIPAVSK 204
                 SVC+                               LG+   + +Y  L+  +  
Sbjct: 749 EILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLG 808

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           +   ++A  L  ++   G  P    Y  ++    +  + +  +  +SEM+ +G  PN   
Sbjct: 809 SNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAIT 868

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + ++I+   +     +A +   E+     +P    +  + DGL   G+ + A KI
Sbjct: 869 HNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKI 923


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +IE   + G +D AVE+F +      Q  + +Y +L+  LC  +       ++RRM
Sbjct: 47  SYATLIEGLCEAGRIDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRM 102

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G+ P  R YA +V+  C   K +EA+E LQEM +KG  P V     ++      G +
Sbjct: 103 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 162

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++  M  +G   ++ T+N+L++  C  G+V   + +   +   G+  D  TY +L
Sbjct: 163 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 222

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G I+ AFRLL  +  DG       Y  +I  + + G+ D A   F  ++ +G 
Sbjct: 223 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 282

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   +  LI    + G+   A  +L +M   G TP
Sbjct: 283 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 319



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 139/314 (44%), Gaps = 35/314 (11%)

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           CV+   +++ A C+      A  ++  M  +G  P+  TY  LV  +C+ GK+ +A   L
Sbjct: 145 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLL 204

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            +M   G NP     +LL++G    G++ESA +++  M   G + D  T+N+LI  +CK 
Sbjct: 205 NKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKD 264

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G  +    ++ S+   G+  +  T+  LI  + K+G  D A++ L  +V  G  P    Y
Sbjct: 265 GRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTY 324

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-----------------TMCG 273
           +  I+ + +     +   F  EM  K   P+   YT++I                  M  
Sbjct: 325 SSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVS 384

Query: 274 RG------------------GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G                  GR  EA N L+EM++ G+T  +  ++ + DG  + G+ D 
Sbjct: 385 SGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDH 444

Query: 316 AEKIELLEVSLRSV 329
           A  I     S+ SV
Sbjct: 445 AVSILKQMTSVASV 458



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 142/370 (38%), Gaps = 52/370 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L     T + +I    K G  D A  +F+       +   + +NSL+  
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+  + +M+  G  PD  TY+  +   C     +E   F+ EM  K   P 
Sbjct: 296 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 355

Query: 122 VRGRDLLVQGLLN-----------------------------------AGYLESAKQMVN 146
                +++  LL                                     G L  A+ ++ 
Sbjct: 356 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 415

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI------- 199
           +M K G  +D   +N+L++     G+ +  V +   +  +    +  TY IL+       
Sbjct: 416 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 475

Query: 200 ---------PA-VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                    PA V KA  + + F L   + ++   P    Y+ I++G    G+ ++A   
Sbjct: 476 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSL 535

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            S MK      N  +YT L+T   +  R+++A   +  M + G  P    +  +  GL  
Sbjct: 536 VSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLIC 595

Query: 310 CGKHDLAEKI 319
            G+ D A++I
Sbjct: 596 EGQTDKAKEI 605



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 4/229 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+R G+ PD  T+  L+  +C + ++  A++   +M  +GF   V     L++GL  AG 
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A ++  +M +     D+  + +L++ +C +   E  + M   + +LG       Y  
Sbjct: 61  IDEAVELFGEMDQP----DMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++    +     EA  +L  + E G  P       +I    + G+  DA      MK++G
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             PN   Y  L+      G+  +A   L +M   G+ P +  ++L+  G
Sbjct: 177 CKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRG 225



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 5/178 (2%)

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M++ G+  D  TFNSLI   C++ +V+   +++  +   G   DV +Y  LI  + +AG 
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           IDEA  L   +     +P   +YA ++KG+    + ++       MK  G  P+   Y  
Sbjct: 61  IDEAVELFGEM----DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           ++    R  +  EA   L EM E GL P +  C  ++    K     D    +EL+++
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 174



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 1   MWKTIEL---------MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WK IEL         MK      +  T S I+E F + G  + A  + +     +    
Sbjct: 488 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 547

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +Y +L+   C+ K +  A+ L+  MI+ GF+P   +Y  L++     G+  +A+E   
Sbjct: 548 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFM 607

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
               K ++P      +++ GL+  G+ + +++M+
Sbjct: 608 NSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMI 641



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+S+L    E      A +L+  M       ++  Y  LV  +C S +  +A   +  M 
Sbjct: 516 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 575

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P +     L+ GL+  G  + AK++      + +  D   +  +I+ + K G  +
Sbjct: 576 QHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 635

Query: 175 FCVEMYYSVCKLGLCADVSTYKIL 198
              EM   + ++       TY +L
Sbjct: 636 ISREMIIMLERMNCRPSHQTYAML 659


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 1/300 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I   G+ GL+D  +EVF++  +    + V  Y +L+ A      +  +  L+ RM  
Sbjct: 145 TIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKN 204

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQ-EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           +   P   TY  ++NA    G   E       EM  +G  P +   + L+      G  +
Sbjct: 205 EKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A+ +   M   G V DL T++ L+ET  K   +E   ++   +   G   D+++Y +L+
Sbjct: 265 EAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLL 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A +K+G I EA  + H +   G  P  + Y+ ++    + G++DD    F EMK     
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTD 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y +LI + G GG F E      +M E  + P    ++ +       G H+ A KI
Sbjct: 385 PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKI 444



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 1/310 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    +S S  + + +I  +G++G  + ++E+ ++         +L YN+++ A     L
Sbjct: 167 MPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGL 226

Query: 68  -FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
            + G   L   M  +G  PD  TY  L++A    G   EA+   + M+D G  P +    
Sbjct: 227 DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            LV+       LE    ++ +M   G + D+ ++N L+E   KSG ++  + +++ +   
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   + +TY +L+    ++G  D+  +L   +      P  + Y  +I+     G F + 
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F +M  +   P+   Y  +I  CG+GG   +A   L  MT   + P S+ +  V + 
Sbjct: 407 VTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEA 466

Query: 307 LKNCGKHDLA 316
                 ++ A
Sbjct: 467 FGQAALYEEA 476



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 119/285 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++E FGK   ++   ++  +  +      +  YN LL A  +      A  +  +M
Sbjct: 284 TYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQM 343

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY++L+N +  SG+  + ++   EM     +P     ++L++     GY 
Sbjct: 344 QAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYF 403

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    + + M+++    D+ET+  +I    K G  E   ++   +    +      Y  +
Sbjct: 404 KEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGV 463

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  +A + +EA    + + E G  P    +  ++    R G   ++    S +   G 
Sbjct: 464 IEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGI 523

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           P NR  +   I    +GG+F EA    V+M +    P  R  + V
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 128/297 (43%), Gaps = 1/297 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           ++ MK   +S S  T + +I    + GL  +  + +F +      Q  ++ YN+LL A  
Sbjct: 199 LDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              L   A  + R M   G VPD  TY+ LV  +    ++ +  + L EM+  G  P + 
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDIT 318

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++L++    +G ++ A  + ++M   G   +  T++ L+    +SG  +   +++  +
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
                  D +TY ILI    + G   E   L H++VE+  +P    Y  II    + G  
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           +DA      M      P+   YT +I   G+   + EA      M E+G  P    F
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETF 495



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 123/289 (42%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            GL D A  VF           +  Y+ L+    +++       L+  M   G +PD  +
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITS 319

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y +L+ A+  SG ++EA     +M   G  P      +L+     +G  +  +Q+  +M 
Sbjct: 320 YNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                 D  T+N LIE   + G  +  V +++ + +  +  D+ TY+ +I A  K G+ +
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A ++L  +  +   P    Y  +I+   +   +++A   F+ M   G  P+   +  L+
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
               RGG   E+   L  + + G+      F+   +  K  GK + A K
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVK 548



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 91/203 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N      T +++IE FG+ G     V +F+     N +  +  Y  ++FA  +  L
Sbjct: 378 MKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +++ M     VP  + Y  ++ A+  +    EA      M + G NP +     
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHS 497

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G ++ ++ ++++++  G   + +TFN+ IE   + G+ E  V+ Y  + K  
Sbjct: 498 LLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSR 557

Query: 188 LCADVSTYKILIPAVSKAGMIDE 210
              D  T + ++   S A ++DE
Sbjct: 558 CDPDERTLEAVLSVYSFARLVDE 580



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 120/299 (40%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    + +  T S+++  FG+ G  D+  ++F +  + N       YN L+    E   
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F     L   M+ +   PD  TY  ++ A    G   +A++ LQ M+     P  +    
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++    A   E A    N M + G    +ETF+SL+ +  + G V+    +   +   G
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  T+   I A  + G  +EA +   ++ +    P       ++         D+  
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECR 582

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F EMK     P+   Y M++ + G+  R+ +    L EM    ++ I +    +  G
Sbjct: 583 EQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKG 641



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/299 (17%), Positives = 122/299 (40%), Gaps = 14/299 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ M   ++  S +  + +IE FG+  L + A+  FN          +  ++SLL++ 
Sbjct: 443 KILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSF 502

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
               L   + A++ R++  G   ++ T+   + A+   GK  EA +   +M     +P  
Sbjct: 503 ARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R  + ++     A  ++  ++   +M     +  +  +  ++    K+   +   E+   
Sbjct: 563 RTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEE 622

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAF-----RLLHNLVEDGHKPFPSLYAPIIKGM 237
           +    L   VS    +I  + K    D++       +L  L  +G       Y  ++  +
Sbjct: 623 M----LSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDAL 678

Query: 238 FRRGQFDDAFCFFSEMKIKGHPP-----NRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           +  GQ + A    +E   +G  P     N+ V+++ +     GG +   + +L ++ +M
Sbjct: 679 WWLGQKERAARVLNEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDM 737



 Score = 42.4 bits (98), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y I+I  + + G++D+   +   +   G       Y  +I    R G+++ +      MK
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEA-ANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
            +   P+   Y  +I  C RGG   E       EM   G+ P     D+VT    L  C 
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQP-----DIVTYNTLLSACA 258

Query: 312 KHDLAEKIELL 322
              L ++ E++
Sbjct: 259 IRGLGDEAEMV 269


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 129/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMR 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   +M EA     EM D G  P       L+ G    G L+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  +  +M+ QGF  D+ T+N+LI  +CK G+++    +   + + GL  D  TY  LI
Sbjct: 259 LAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF L   ++++  +    +Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM++    + G   +A+  L EM   G  P
Sbjct: 379 PDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVP 414



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 2/269 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A  +  +M+  G V +  TF +LI+  CK+G +
Sbjct: 198 RASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRL 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +++Y  +   G   DV TY  LI  + K G + +A  LL  +   G KP    Y  +
Sbjct: 258 DLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +  VYT LI    + GR V+A   L EM  +GL
Sbjct: 318 IDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            P    + ++ +    C K D+ +  ELL
Sbjct: 378 KPDDETYTMIMNEF--CKKGDVKKASELL 404



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 121/255 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A +  ++M ++GF+P V   
Sbjct: 220 SRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M ++G   D  T+ +LI+  CK G++E   E+   + K
Sbjct: 280 NTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  I+    ++G    
Sbjct: 340 ESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKK 399

Query: 246 AFCFFSEMKIKGHPP 260
           A     EM+  G  P
Sbjct: 400 ASELLREMQRNGRVP 414



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 129/287 (44%), Gaps = 20/287 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FVP----------DKRTYAILVNA 96
           Y +++  LC  ++F  A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 16  YCTMIHFLCTHQMFLEAKSLIQTVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLITA 75

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +      F  P      +++ L+   Y +       ++++ G+   
Sbjct: 76  YLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGYPAS 135

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK GE+     ++ ++ K GL   V ++  L+    K G +DE FRL +
Sbjct: 136 LYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKN 195

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G +P    Y+ +I G+ +  + D+A   F EM   G  PN   +T LI    + G
Sbjct: 196 AMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNG 255

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           R   A +   +M   G +P    ++ +  GL  C K DL +   LL+
Sbjct: 256 RLDLAMDIYRQMLNQGFSPDVVTYNTLIYGL--CKKGDLKQARYLLD 300



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 37/304 (12%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E F      + +       ++L  L + K F   +   + ++
Sbjct: 69  FSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G+MR AQ     ++  G  P V                 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSV----------------- 171

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
                              +FN+L+    K G+++    +  ++   G+  DV TY +LI
Sbjct: 172 ------------------VSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLI 213

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K   +DEA  L   ++++G  P    +  +I G  + G+ D A   + +M  +G  
Sbjct: 214 NGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFS 273

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    + G   +A   L EM+  GL P    +  + DG  +C + DL    
Sbjct: 274 PDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDG--SCKEGDLETAF 331

Query: 320 ELLE 323
           EL E
Sbjct: 332 ELRE 335



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 56/104 (53%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E+  +    + +   ++Y +L+F LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +R G  PD  TY +++N +C  G +++A E L+EM   G  P V
Sbjct: 373 LRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCV 416


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 138/301 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+ +       NCQ  V++Y S++ +LC+ +    A+ L  +M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  LV+A C+  + +     L +M +    P V     +V  L   G +
Sbjct: 232 VGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKV 291

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++V+ MI++G   D+ T+ +L++  C   E++  V+++  + + G   DV +Y  L
Sbjct: 292 TEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTL 351

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ID+A  L   +      P    Y  ++ G+   G+  DA   F EM  +G 
Sbjct: 352 INGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQ 411

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y++L+    +     EA   L  +    L P  + ++++ DG+   G+ + A  
Sbjct: 412 MPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 471

Query: 319 I 319
           +
Sbjct: 472 L 472



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 144/307 (46%), Gaps = 5/307 (1%)

Query: 2   WK--TIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  T  L +  N  + P  +  S +++   K G V  A E+ +       +  V+ Y +
Sbjct: 256 WKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTT 315

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+RKGF PD  +Y  L+N +C   K+ +A    +EM  K 
Sbjct: 316 LMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE 375

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           + P  +  + L+ GL + G L+ A  + ++M+ +G + DL T++ L++++CK+  +E  +
Sbjct: 376 WIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAM 435

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    L  D+  Y I+I  + +AG ++ A  L  NL   G  P    Y  +I G+
Sbjct: 436 ALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGL 495

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +RG  ++A   F EM      P+   Y  +     +    + A   L EM   G +  S
Sbjct: 496 CKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555

Query: 298 RCFDLVT 304
            CF +++
Sbjct: 556 -CFLMLS 561



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F++         +  Y SL+ ALC +  +     L+ +M+   
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 270

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD   ++ +V+A C  GK+ EA E +  M  +G  P V     L+ G      ++ A 
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + M+++GF  D+ ++ +LI   CK  +++  + ++  +C+     D  TY  L+  +
Sbjct: 331 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGL 390

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G + +A  L H +V  G  P    Y+ ++  + +    ++A      ++     P+ 
Sbjct: 391 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDI 450

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            VY ++I    R G    A +    ++  GL P    ++++  GL   G  + A K+
Sbjct: 451 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 507



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 135/273 (49%), Gaps = 4/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+++++++ ALC+      A+ ++  MI++G  PD  TY  L++  C   +M EA +   
Sbjct: 275 VVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFD 334

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KGF P V     L+ G      ++ A  +  +M ++ ++ D +T+N+L+  +C  G
Sbjct: 335 MMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVG 394

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  + +++ +   G   D+ TY IL+ ++ K   ++EA  LL  +      P   +Y 
Sbjct: 395 RLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYN 454

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II GM R G+ + A   FS +  KG  P+   Y ++I    + G   EA    +EM   
Sbjct: 455 IIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGN 514

Query: 292 GLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
             +P    ++ +  G L+N   ++    I+LLE
Sbjct: 515 DCSPDGCTYNTIARGFLQN---NETLRAIQLLE 544



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 134/309 (43%), Gaps = 2/309 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            P T + +I      G +  A+ +F+K      Q  V+ Y +L+  LC+V     A  L+
Sbjct: 134 DPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLL 193

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M +    PD   Y  ++++ C   ++ EA     +M  +G +P +     LV  L N 
Sbjct: 194 RSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNL 253

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
              +    ++N+M+    + D+  F+++++ +CK G+V    E+   + + G+  DV TY
Sbjct: 254 CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTY 313

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+        +DEA ++   +V  G  P    Y  +I G  +  + D A   F EM  
Sbjct: 314 TTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCR 373

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           K   P+   Y  L+      GR  +A     EM   G  P    + ++ D L  C    L
Sbjct: 374 KEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL--CKNRHL 431

Query: 316 AEKIELLEV 324
            E + LL+ 
Sbjct: 432 EEAMALLKA 440



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 127/305 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     V  A  V  K      Q     + +L+  LC    
Sbjct: 91  MDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK 150

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 151 IGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTS 210

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + ++M+ QG   D+ T+ SL+  +C   E +    +   +    
Sbjct: 211 IIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSK 270

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV  +  ++ A+ K G + EA  ++  +++ G +P    Y  ++ G   + + D+A 
Sbjct: 271 ILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   YT LI    +  +  +A     EM      P ++ ++ +  GL
Sbjct: 331 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGL 390

Query: 308 KNCGK 312
            + G+
Sbjct: 391 CHVGR 395



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 136/295 (46%), Gaps = 2/295 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  FN+    +    ++ +  LL ++ ++K +    +L  +M   G  P+  T  I
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 105

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N++C   ++  A   L ++   G  P       L++GL   G +  A  + +KMI +G
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEG 165

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  ++ T+ +LI  +CK G     + +  S+ +     DV  Y  +I ++ K   + EAF
Sbjct: 166 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAF 225

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +V  G  P    Y  ++  +    ++       ++M      P+  +++ ++   
Sbjct: 226 NLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDAL 285

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            + G+  EA   +  M + G+ P    +  + DG  +C + ++ E +++ ++ +R
Sbjct: 286 CKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG--HCLQSEMDEAVKVFDMMVR 338



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 2/190 (1%)

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           L+   L+ A    N+++       +  F  L+ +I K       + +   +   G+  +V
Sbjct: 41  LHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNV 100

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T  ILI +      +  AF +L  +++ GH+P P+ +  +I+G+   G+  +A   F +
Sbjct: 101 YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 160

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  PN   Y  LI    + G    A   L  M +    P    +  + D L  C  
Sbjct: 161 MIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL--CKD 218

Query: 313 HDLAEKIELL 322
             + E   L 
Sbjct: 219 RQVTEAFNLF 228


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y++++  L +      A  L   M  KG  PD  TY+ ++N +CSSGK  EAQ  LQ
Sbjct: 152 VVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQ 211

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +  +P V     L+  L+  G L SA+ ++ +MI  G   ++ T N+L++ +C SG
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271

Query: 172 EVEFCVEMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +++  +EM+ ++ K            G+  DV TY ILI  +   G   EA  L   +  
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y+ +I G+ ++ + D+A   F  M  K   PN   +  LIT   + G   +
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDD 391

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                 EM   G+   +  +  +  G +  G 
Sbjct: 392 GLELFCEMGRRGIVANAITYITLIRGFRKVGN 423



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 135/314 (42%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         ++ Y+ ++   C    +  A  L++ M+ 
Sbjct: 156 SAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV 215

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  T++ L+NA    G +  AQ+ LQEM   G  P V   + L+ GL ++G L+ 
Sbjct: 216 RKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKD 275

Query: 141 AKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           A +M   M K            G   D++T+N LI  +   G+     E+Y  +   G+ 
Sbjct: 276 ALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 335

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  +I  + K   +DEA ++  ++      P    +  +I G  + G  DD    
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F EM  +G   N   Y  LI    + G    + +   EM   G+ P +     +  GL +
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWS 455

Query: 310 CGKHDLAEKIELLE 323
             K +L + + +LE
Sbjct: 456 --KEELKKALAMLE 467



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 23/311 (7%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     V  A+++F++     C+  V+ + +L+  LC       A AL+ RM+  G  
Sbjct: 58  HGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 113

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           P++ TY  +V+  C  G    A   L++M +     P V     ++ GL   G    A+ 
Sbjct: 114 PNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQN 173

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  +M  +G   D+ T++ +I   C SG+      +   +    +  DV T+  LI A+ 
Sbjct: 174 LFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK--------- 254
           K G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+         
Sbjct: 234 KEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDAT 293

Query: 255 --IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
               G  P+   Y +LI+     G+F+EA     EM   G+ P +  +  + +GL  C +
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL--CKQ 351

Query: 313 HDLAEKIELLE 323
             L E  ++ +
Sbjct: 352 SRLDEATQMFD 362



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 21/289 (7%)

Query: 1   MWKTIELMKPYNLSVSPQ---------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WK        NL +  Q         T S +I  F   G    A  +  +         
Sbjct: 162 LWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ ++ L+ AL +    + A  L++ MI  G  P+  T   L++  C SGK+++A E  +
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 112 EMSD-----------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
            M              G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T+
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTY 341

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +S+I  +CK   ++   +M+ S+       ++ T+  LI    KAGM+D+   L   +  
Sbjct: 342 SSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGR 401

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTML 268
            G       Y  +I+G  + G  + +   F EM   G +P    +  ML
Sbjct: 402 RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I    K G +++A ++  +  +      V+  N+LL  LC+      A 
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 73  ALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +G  P 
Sbjct: 278 EMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ GL     L+ A QM + M  + F  ++ TFN+LI   CK+G V+  +E++ 
Sbjct: 338 TVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFC 397

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+ A+  TY  LI    K G I+ +  +   ++  G  P       ++ G++ + 
Sbjct: 398 EMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKE 457

Query: 242 QFDDAFCFFSEMKIK 256
           +   A     E+++ 
Sbjct: 458 ELKKALAMLEELQMS 472



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D  ++ IL+  +CS  K+  A     +++  GF+P +   + L+ GL     +  A  + 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M K   V    TF +L+  +C+ G V   V +   + + GL  +  TY  ++  + K 
Sbjct: 74  HQMCKPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 206 GMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           G    A  LL  + E  H KP   +Y+ II G+++ G+  DA   F EM+ KG  P+   
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           Y+ +I      G++ EA   L EM    ++P    F  + + L   G  DL    +LL+ 
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEG--DLNSAQDLLQE 247

Query: 325 SLRS 328
            + S
Sbjct: 248 MISS 251



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L++   +   L  A     K+ K GF   L TFN+L+  +C    V   +++++ +CK
Sbjct: 19  NILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK 78

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                +V T+  L+  + + G + EA  LL  +VEDG +P    Y  I+ GM + G    
Sbjct: 79  ----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 246 AFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A     +M+   H  P+  +Y+ +I    + GR  +A N  +EM + G+ P    +  + 
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 305 DGLKNCGKHDLAEKIELLEVSLRSV 329
           +G  + GK   A+++ L E+ +R +
Sbjct: 195 NGFCSSGKWSEAQRL-LQEMLVRKI 218


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 146/316 (46%), Gaps = 17/316 (5%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K  LV  A E++++         V+ +++L++  C V  F  A+ L   M+ 
Sbjct: 192 STIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVL 251

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM---------SDKGFN--------PPVR 123
               PD  T+ ILV+A C  G  +E +  L  M         +   FN        P V 
Sbjct: 252 TNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVH 311

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
              ++++ L     ++ A  + N+M  +G   D  T++SLI+ +CKS  +    E+   +
Sbjct: 312 SYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQM 371

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G  ADV TY   + A+ K   +D+A  L+  + + G +P  + Y  +I G+ + G+F
Sbjct: 372 HARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRF 431

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++A   F ++ IKG+      Y ++I      G F EA   L +M + G TP    ++ +
Sbjct: 432 ENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETI 491

Query: 304 TDGLKNCGKHDLAEKI 319
              L    ++  AEK+
Sbjct: 492 IRALFKNDENHKAEKL 507



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 112/242 (46%), Gaps = 3/242 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +   L+++++E  +   V+ A  VFN          V  Y  ++  LC++K+   A +L 
Sbjct: 277 TKNVLAVMMKEVNQ---VNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLF 333

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  PDK TY+ L++  C S ++  A E L +M  +G    V      +  L   
Sbjct: 334 NEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKN 393

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             ++ A  +V K+  QG   ++ T+N LI+ +CK G  E    ++  +   G    V TY
Sbjct: 394 HQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTY 453

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            I+I  +   G+ DEA  LL  + ++G  P    Y  II+ +F+  +   A     EM  
Sbjct: 454 NIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIA 513

Query: 256 KG 257
           +G
Sbjct: 514 RG 515



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 129/298 (43%), Gaps = 19/298 (6%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +++P   T + +I  +   G +D A  V  K          +   +L+  LC     H A
Sbjct: 78  AITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEA 137

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
                 +I +GF  ++ +Y IL+N  C  G+ R A + L+++  K  N  V     ++  
Sbjct: 138 LHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDS 197

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     +  A ++ ++MI +    D+ TF++LI   C  G+ +    +++ +    +  D
Sbjct: 198 LCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-----------------PFPSLYAPII 234
           V T+ IL+ A+ K G   E   +L  ++++ ++                 P    Y  II
Sbjct: 258 VCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIII 317

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           K + +    D+A   F+EM+ KG  P++  Y+ LI    +  R   A   L +M   G
Sbjct: 318 KRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARG 375



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 116/263 (44%), Gaps = 2/263 (0%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL--FHGAYALIRRMIRKGFVP 85
             H  V +A+  F +    N    ++ +N +L +L +     +  A +L  R+      P
Sbjct: 22  SNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITP 81

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
              T+  ++N +C  G+M  A   L ++   G++P       L++GL   G +  A    
Sbjct: 82  SIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFH 141

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           + +I +GF L+  ++  LI  +CK GE    +++   +    +  +V  Y  +I ++ K 
Sbjct: 142 DHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKE 201

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
            ++ EA+ L   ++     P    ++ +I G    GQF +AF  F EM +    P+   +
Sbjct: 202 KLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTF 261

Query: 266 TMLITMCGRGGRFVEAANYLVEM 288
            +L+    + G   E  N L  M
Sbjct: 262 NILVDALCKEGSTKETKNVLAVM 284



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ ++ M          T +  +    K+  VD AV +  K      Q  +  YN L+  
Sbjct: 365 WELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDG 424

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+   F  A  + + ++ KG+     TY I++N  C  G   EA   L++M D G  P 
Sbjct: 425 LCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD 484

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           V   + +++ L        A++++ +MI +G +
Sbjct: 485 VVTYETIIRALFKNDENHKAEKLLREMIARGLL 517


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 128/272 (47%), Gaps = 11/272 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y++++  L +      A  L   M  KG  PD  TY+ ++N +CSSGK  EAQ  LQ
Sbjct: 152 VVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQ 211

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +  +P V     L+  L+  G L SA+ ++ +MI  G   ++ T N+L++ +C SG
Sbjct: 212 EMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSG 271

Query: 172 EVEFCVEMYYSVCKL-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +++  +EM+ ++ K            G+  DV TY ILI  +   G   EA  L   +  
Sbjct: 272 KLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPH 331

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y+ +I G+ ++ + D+A   F  M  K   PN   +  LIT   + G   +
Sbjct: 332 RGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDD 391

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
                 EM   G+   +  +  +  G +  G 
Sbjct: 392 GLELFCEMGRRGIVANAITYITLIRGFRKVGN 423



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 134/314 (42%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F +         ++ Y+ ++   C    +  A  L++ M+ 
Sbjct: 156 SAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV 215

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  T++ L+NA    G +  AQ+ LQEM   G  P V   + L+ GL ++G L+ 
Sbjct: 216 RKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKD 275

Query: 141 AKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           A +M   M K            G   D++T+N LI  +   G+     E+Y  +   G+ 
Sbjct: 276 ALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 335

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  +I  + K   +DEA ++  ++      P    +  +I G  + G  DD    
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F EM  +G   N   Y  LI    + G    + +   EM   G+ P +     +  GL +
Sbjct: 396 FCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWS 455

Query: 310 CGKHDLAEKIELLE 323
             K +L   + +LE
Sbjct: 456 --KEELKRALAMLE 467



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 23/311 (7%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     V  A+++F++     C+  V+ + +L+  LC       A AL+ RM+  G  
Sbjct: 58  HGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 113

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           P++ TY  +V+  C  G    A   L++M +     P V     ++ GL   G    A+ 
Sbjct: 114 PNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQN 173

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  +M  +G   D+ T++ +I   C SG+      +   +    +  DV T+  LI A+ 
Sbjct: 174 LFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALV 233

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK--------- 254
           K G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+         
Sbjct: 234 KEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDAT 293

Query: 255 --IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
               G  P+   Y +LI+     G+F+EA     EM   G+ P +  +  + +GL  C +
Sbjct: 294 HAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGL--CKQ 351

Query: 313 HDLAEKIELLE 323
             L E  ++ +
Sbjct: 352 SRLDEATQMFD 362



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 123/289 (42%), Gaps = 21/289 (7%)

Query: 1   MWKTIELMKPYNLSVSPQ---------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WK        NL +  Q         T S +I  F   G    A  +  +         
Sbjct: 162 LWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ ++ L+ AL +    + A  L++ MI  G  P+  T   L++  C SGK+++A E  +
Sbjct: 222 VVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 112 EMSD-----------KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
            M              G  P V+  ++L+ GL+N G    A+++  +M  +G V D  T+
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTY 341

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           +S+I  +CK   ++   +M+ S+       ++ T+  LI    KAGM+D+   L   +  
Sbjct: 342 SSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGR 401

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTML 268
            G       Y  +I+G  + G  + +   F EM   G +P    +  ML
Sbjct: 402 RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNML 450



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 13/255 (5%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I    K G +++A ++  +  +      V+  N+LL  LC+      A 
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDAL 277

Query: 73  ALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            + + M +            G  PD +TY IL++   + GK  EA+E  +EM  +G  P 
Sbjct: 278 EMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 337

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ GL     L+ A QM + M  + F  ++ TFN+LI   CK+G V+  +E++ 
Sbjct: 338 TVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFC 397

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+ A+  TY  LI    K G I+ +  +   ++  G  P       ++ G++ + 
Sbjct: 398 EMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGLWSKE 457

Query: 242 QFDDAFCFFSEMKIK 256
           +   A     E+++ 
Sbjct: 458 ELKRALAMLEELQMS 472



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D  ++ IL+  +CS  K+  A     +++  GF+P +   + L+ GL     +  A  + 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M K   V    TF +L+  +C+ G V   V +   + + GL  +  TY  ++  + K 
Sbjct: 74  HQMCKPNVV----TFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 206 GMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           G    A  LL  + E  H KP   +Y+ II G+++ G+  DA   F EM+ KG  P+   
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVT 189

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           Y+ +I      G++ EA   L EM    ++P    F  + + L   G  DL    +LL+ 
Sbjct: 190 YSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEG--DLNSAQDLLQE 247

Query: 325 SLRS 328
            + S
Sbjct: 248 MISS 251



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 6/205 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L++   +   L  A     K+ K GF   L TFN+L+  +C    V   +++++ +CK
Sbjct: 19  NILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCK 78

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                +V T+  L+  + + G + EA  LL  +VEDG +P    Y  I+ GM + G    
Sbjct: 79  ----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVS 134

Query: 246 AFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A     +M+   H  P+  +Y+ +I    + GR  +A N  +EM + G+ P    +  + 
Sbjct: 135 ALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMI 194

Query: 305 DGLKNCGKHDLAEKIELLEVSLRSV 329
           +G  + GK   A+++ L E+ +R +
Sbjct: 195 NGFCSSGKWSEAQRL-LQEMLVRKI 218


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 2/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+V+ Q  + II+   KHG +  AVE         C+  ++ YN+L+   C    
Sbjct: 300 MNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGK 359

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ + + KG +P+K +Y  L++A+C  G    A  +L EM+++G  P +     
Sbjct: 360 VSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA 419

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV GL+ AG ++ A  +  KM+++G   D   +N L+  +CK  ++     +   +    
Sbjct: 420 LVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQS 479

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D   Y  L+    + G +DEA +L    +E G  P    Y  +IKG  + G   DA 
Sbjct: 480 VLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAM 539

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              + MK +   P+   Y+ +I    +      A     EM +M   P    +  + +G 
Sbjct: 540 ACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGF 599

Query: 308 KNCGKHDLAEKIELL 322
             C K DL   +++ 
Sbjct: 600 --CRKGDLHRSLKIF 612



 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 152/324 (46%), Gaps = 5/324 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN-KCTAFNCQQCVLLYNSLL 59
           M   +E M+   +S + + +S++I+ +   GLV+ A+E++      +     V+  NSLL
Sbjct: 113 MEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLL 172

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSD 115
             L ++     A  L   M+      D+     +  I+V   C  GK+ E ++ +++   
Sbjct: 173 NMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEEGRKLIEDRWG 232

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P +   + L+ G    G +E A  +  ++  +GF+  +ET+ ++I   CK G+ + 
Sbjct: 233 QGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKA 292

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              +   +   GL  +V  Y  +I A  K G I +A   +  ++E G KP    Y  +I 
Sbjct: 293 IDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLIS 352

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  R G+  +A     +   KG  PN+  YT LI    + G +  A+N+L+EMTE G  P
Sbjct: 353 GSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKP 412

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               +  +  GL   G+ D+A  I
Sbjct: 413 DLVTYGALVHGLVVAGEVDVALTI 436



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 134/305 (43%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   +  ++++   K G ++   ++        C   ++ YN+L+   C+      A  L
Sbjct: 202 VDNYSTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGL 261

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              +  KGF+P   TY  ++N +C  G  +     L EM+ +G    V+  + ++     
Sbjct: 262 FIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYK 321

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G++  A + +  MI+ G   D+ T+N+LI   C+ G+V    ++       GL  +  +
Sbjct: 322 HGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFS 381

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI A  K G  D A   L  + E GHKP    Y  ++ G+   G+ D A     +M 
Sbjct: 382 YTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKML 441

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  P+  +Y +L++   +  +   A   L EM +  + P +  +  + DG    G  D
Sbjct: 442 ERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLD 501

Query: 315 LAEKI 319
            A K+
Sbjct: 502 EARKL 506



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 5/309 (1%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P   S +P     +I  + K G  D A     + T    +  ++ Y +L+  L       
Sbjct: 377 PNKFSYTP-----LIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVD 431

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +  +M+ +G  PD   Y IL++  C   K+  A+  L EM D+   P       LV
Sbjct: 432 VALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLV 491

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            G +  G L+ A+++    I++G    +  +N++I+  CK G ++  +     + K  L 
Sbjct: 492 DGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLA 551

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  +I    K   +D A ++   +V+   KP    Y  +I G  R+G    +   
Sbjct: 552 PDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKI 611

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F EM+  G  PN   Y++LI    +  + ++AA++  EM      P    F+ + +G   
Sbjct: 612 FREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSK 671

Query: 310 CGKHDLAEK 318
            G   ++EK
Sbjct: 672 NGTRAISEK 680



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 127/304 (41%), Gaps = 51/304 (16%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+  LC+      A  L+  M+ +  +PD   YA LV+ +  +G + EA++  +  
Sbjct: 451 IYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELT 510

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--------------GFVL--DL 157
            +KG NP + G + +++G    G ++ A   +N+M K+              G+V   DL
Sbjct: 511 IEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDL 570

Query: 158 E-------------------TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +                   T+ SLI   C+ G++   ++++  +   GL  +V TY IL
Sbjct: 571 DGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSIL 630

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG---------QFDDA--- 246
           I +  K   + +A      ++ +   P    +  ++ G  + G         +F +    
Sbjct: 631 IGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQS 690

Query: 247 --FCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
               FF  M   G  P    Y ++LI +C + G F  A     +MT  G  P S  F  +
Sbjct: 691 MFLNFFGRMISDGWAPRSAAYNSILICLC-QYGMFRTALQLSNKMTSKGCIPDSVSFVAL 749

Query: 304 TDGL 307
             G+
Sbjct: 750 LHGV 753



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 122/290 (42%), Gaps = 24/290 (8%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P     + +++ F ++G +D A ++F           ++ YN+++   C+  +   A
Sbjct: 479 SVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDA 538

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            A I RM ++   PD+ TY+ +++ +     +  AQ+  +EM      P V     L+ G
Sbjct: 539 MACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLING 598

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSVCKLG 187
               G L  + ++  +M   G V ++ T++ LI + CK  ++     F  EM  + C   
Sbjct: 599 FCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKC--- 655

Query: 188 LCADVSTYKILIPAVSKAGM--IDEA------------FRLLHNLVEDGHKPFPSLYAPI 233
           +  DV T+  L+   SK G   I E                   ++ DG  P  + Y  I
Sbjct: 656 VPNDV-TFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSI 714

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +  + + G F  A    ++M  KG  P+   +  L+      GR  E  N
Sbjct: 715 LICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKN 764



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 14/220 (6%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  MK  +L+    T S +I+ + K   +D A ++F +     C+  V+ Y SL+   C 
Sbjct: 542 INRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCR 601

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               H +  + R M   G VP+  TY+IL+ ++C   K+ +A  F +EM      P    
Sbjct: 602 KGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVT 661

Query: 125 RDLLVQGLLNAG----------YLESAKQM----VNKMIKQGFVLDLETFNSLIETICKS 170
            + LV G    G          + E+ + M      +MI  G+      +NS++  +C+ 
Sbjct: 662 FNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQY 721

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           G     +++   +   G   D  ++  L+  V   G   E
Sbjct: 722 GMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKE 761


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 147/322 (45%), Gaps = 6/322 (1%)

Query: 5   IELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +E MK  N++  P T++   +I+ F K G  D A E+F +      Q  V+  N+L+  L
Sbjct: 380 LEEMKMGNIN-RPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGL 438

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+    H A      M  KG   +  TY  L++A+C    +  A +  +EM   G +P  
Sbjct: 439 CKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDA 498

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL  AG +  A  +V+K+   GF LD   +N LI   CK  ++E   E+   
Sbjct: 499 VVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTE 558

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D  TY  LI  + K G    A +++  ++++G +P    Y  II     +  
Sbjct: 559 MEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKN 618

Query: 243 FDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            D+    F EM      PPN  +Y +LI    R      A + + +M    + P +  ++
Sbjct: 619 VDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYN 678

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            +  G+++  K  L +  EL++
Sbjct: 679 AILKGVRD--KKMLHKAFELMD 698



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 139/325 (42%), Gaps = 7/325 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ +  +     +V   + + ++   G+   +    E+  +      +  V+ +  L+  
Sbjct: 266 WEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNH 325

Query: 62  LCEVKLFHGAYALIRRMIRKG------FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           LC+ +    A  +  R+  KG        PD   +  L++  C  GK  +    L+EM  
Sbjct: 326 LCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKM 385

Query: 116 KGFN-PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
              N P     + L+ G   AG  + A ++  +M ++G   ++ T N+L++ +CK G V 
Sbjct: 386 GNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVH 445

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             VE +  +   GL  + +TY  LI A      I+ A +    ++  G  P   +Y  +I
Sbjct: 446 RAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLI 505

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   G+ +DA    S++K+ G   +R  Y +LI+   +  +       L EM E G+ 
Sbjct: 506 SGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVK 565

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P +  ++ +   L   G    A K+
Sbjct: 566 PDTITYNTLISYLGKTGDFATASKV 590



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 1/247 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T + +I  F     ++ A++ F +  +  C    ++Y SL+  LC    
Sbjct: 454 MKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGR 513

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  ++ ++   GF  D+  Y +L++ +C   K+    E L EM + G  P     + 
Sbjct: 514 MNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNT 573

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L   G   +A +++ KMIK+G    + T+ ++I   C    V+  ++++  +C   
Sbjct: 574 LISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTS 633

Query: 188 -LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +   Y ILI A+ +   +D A  L+ ++     +P  + Y  I+KG+  +     A
Sbjct: 634 KVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKA 693

Query: 247 FCFFSEM 253
           F     M
Sbjct: 694 FELMDRM 700



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 134/312 (42%), Gaps = 17/312 (5%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L ++P++ SL+++      LV++++ +FN+       +   L + LL  L +      A 
Sbjct: 137 LPLTPKSASLLLQCLENARLVNDSLLLFNQLDP--SSKSPQLCHGLLRVLLKSGRAGDAL 194

Query: 73  ALIRRM--IRKGFVPDKRTYAILVNAWCSSGKM---REAQEFLQEMSDKGFNPPVRGRDL 127
            ++  M     GF     T  I+      SG+     E    + ++ ++G  P       
Sbjct: 195 HVLDEMPQANSGF---SVTGEIVFGELVRSGRSFPDGEVVGLVAKLGERGVFPDGFKLTQ 251

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L        A ++++ +++ G  +D  + N+L+  + +  +++   E+   + K  
Sbjct: 252 LVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRDIKRMNELLAEMEKRK 311

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH------KPFPSLYAPIIKGMFRRG 241
           +   V T+ IL+  + KA  IDEA ++   L   G       +P   L+  +I G+ + G
Sbjct: 312 IRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVG 371

Query: 242 QFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + +D      EMK+   + PN   Y  LI    + G F  A     +M E G+ P     
Sbjct: 372 KEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITL 431

Query: 301 DLVTDGLKNCGK 312
           + + DGL   G+
Sbjct: 432 NTLVDGLCKHGR 443



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 3/163 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P T++   +I   GK G    A +V  K      +  V+ Y +++ A C  K      
Sbjct: 564 VKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGM 623

Query: 73  ALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +   M     VP +   Y IL++A C +  +  A   +++M  K   P     + +++G
Sbjct: 624 KIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKG 683

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + +   L  A +++++M+++    D  T   L E +   GE+E
Sbjct: 684 VRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIE 726



 Score = 42.7 bits (99), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 2/106 (1%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P T+  +++I+   ++  VD A+ +         +     YN++L  + + K+ H A+
Sbjct: 635 VPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAF 694

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
            L+ RM+ +   PD  T  +L     + G++ + + F++   D  +
Sbjct: 695 ELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFVEGYQDSSY 740



 Score = 42.0 bits (97), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 1/144 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFA 61
           K +E M    L  S  T   II  +     VD  +++F + C+        ++YN L+ A
Sbjct: 589 KVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA 648

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A +L+  M  K   P+  TY  ++        + +A E +  M ++   P 
Sbjct: 649 LCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708

Query: 122 VRGRDLLVQGLLNAGYLESAKQMV 145
               ++L + L   G +E  K  V
Sbjct: 709 YITMEVLTEWLSAVGEIEKLKHFV 732


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 151/309 (48%), Gaps = 8/309 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           + ++ ++  F  +  VD A E+FN       Q  ++ YN L+   C       A  L   
Sbjct: 249 KEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHM 308

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G  PD  TY IL++ +C   K+ EA+     M ++G  P V   ++L++G      
Sbjct: 309 MVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFER 368

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSVCKLGLCADVS 193
           +  A  ++  M  +  V ++ T+NS+++ +CKSG +    +   EM+Y  C+     DV+
Sbjct: 369 VGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYC-CQPP--PDVT 425

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           TY IL+ ++ +   +++A     +L+ E    P    Y  +I G  +  + D+A   F+ 
Sbjct: 426 TYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNH 485

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   P+   Y +L+     G +  +A   LV++ + G++P  R ++++ +GL   G+
Sbjct: 486 MCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGR 545

Query: 313 HDLAEKIEL 321
              A+KI L
Sbjct: 546 PKTAQKISL 554



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 8/268 (2%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V  A ++F+       Q   + Y  L+   C +     A  L   MI +G VPD  +Y I
Sbjct: 299 VGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNI 358

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+  +C   ++ EA   L++M  K   P +   + +V GL  +G +  A ++V++M    
Sbjct: 359 LIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEM---H 415

Query: 153 FVL----DLETFNSLIETICKSGEVEFCVEMY-YSVCKLGLCADVSTYKILIPAVSKAGM 207
           +      D+ T+N L+E++C+   VE  +  + + + +     +V +Y ILI    K   
Sbjct: 416 YCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRR 475

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +DEA  L +++      P    Y  ++  +F   Q D A     ++  +G  PN   Y +
Sbjct: 476 LDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNI 535

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTP 295
           LI    +GGR   A    + ++  G  P
Sbjct: 536 LINGLHKGGRPKTAQKISLYLSIRGYHP 563



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 115/246 (46%), Gaps = 4/246 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD A  +F+          V  YN L+   C+ +    A  L+  M  K  VP+  TY  
Sbjct: 334 VDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNS 393

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPP-VRGRDLLVQGLLNAGYLESAKQMVNKMI-K 150
           +V+  C SG + +A + + EM      PP V   ++L++ L     +E A      +I +
Sbjct: 394 VVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFE 453

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           + F  ++ ++N LI   CK+  ++  + ++  +C   L  D+ TY IL+ A+     +D+
Sbjct: 454 RSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDK 513

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  LL  +V+ G  P    Y  +I G+ + G+   A      + I+G+ P+  V T +I 
Sbjct: 514 AIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPD--VKTYIIN 571

Query: 271 MCGRGG 276
              +GG
Sbjct: 572 ELCKGG 577



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 56/375 (14%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   L+ PY   +   +  L  +   K   +D+AV +F++    +    ++ +  +L  +
Sbjct: 5   KLPRLLMPYVRRIHLHSQPLPSQSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTI 64

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +++ +  A  L   M  KG VP   T+ IL+N +C  G+M  A   + ++   G  P V
Sbjct: 65  AKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNV 124

Query: 123 -------------------------------RGRDLLVQGLLNA------GYLESAKQMV 145
                                          R  D+L   L+N       G   +A Q++
Sbjct: 125 VTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLL 184

Query: 146 NKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            KM ++  V  +L  +N+++  +CK G +     +   +   G+  D+ TY  LI  + +
Sbjct: 185 QKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCR 244

Query: 205 AGM----------------IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           AG                 +DEA  L + ++E G +     Y  ++ G     +  +A  
Sbjct: 245 AGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARK 304

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F  M  +G  P+   YT+L+       +  EA N    M E GL P    ++++  G  
Sbjct: 305 LFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGY- 363

Query: 309 NCGKHDLAEKIELLE 323
            C    + E + LLE
Sbjct: 364 -CKFERVGEAMNLLE 377



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S +P   S  ++I    K+  +D A+ +FN     N    ++ YN LL AL   +    A
Sbjct: 455 SFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKA 514

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            AL+ +++ +G  P+ RTY IL+N     G+ + AQ+    +S +G++P V+
Sbjct: 515 IALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSIRGYHPDVK 566


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  119 bits (297), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 138/311 (44%), Gaps = 3/311 (0%)

Query: 3   KTIELMKPYNL-SVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           + +EL+K      ++P T+S    ++   K G  + AV++    +       ++ +NS +
Sbjct: 375 EALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAI 434

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            A    + +  A  L+R M   G  P+  TY   + A   S + +EA    +EM  +G +
Sbjct: 435 DACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLS 494

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V   + ++         E A Q++  M  +G   D+ ++NS IE   K  + E  +++
Sbjct: 495 PNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQL 554

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G   D+ +Y   + A +K+G   EA  LL ++   G  P    Y   I    +
Sbjct: 555 LKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGK 614

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             Q+D A     EM+  G  PN   Y+  I  C + GR+ EA + L ++   GLTP ++ 
Sbjct: 615 GEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQT 674

Query: 300 FDLVTDGLKNC 310
           +  V    + C
Sbjct: 675 YLTVISAFQRC 685



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 120/271 (44%), Gaps = 4/271 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM- 113
           YN  + A    + +  A  L+R M  +G  PD  TY   + A    G+ +EA + L +M 
Sbjct: 113 YNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMV 172

Query: 114 -SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
              +G  P V   +  +    N G  + A  ++ +M+ QG   +L T+NS I    K   
Sbjct: 173 APTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRR 232

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            E  +++   V + G      TY  +I A +K G   EA  LL  ++ +        Y+ 
Sbjct: 233 WEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSS 292

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I    R  ++ +A     +M+ +G  PN   Y   I  C +G R+ EA + L EMT +G
Sbjct: 293 VIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVG 352

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           L P    ++  T      G+    E +ELL+
Sbjct: 353 LVPTVISYNSATAACAVNGR--WVEALELLK 381



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 122/288 (42%), Gaps = 4/288 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+  +  A       + YNS L A  +   +  A  L+R M   G  PD  ++   ++
Sbjct: 376 ALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAID 435

Query: 96  AWCSSGKMRE-AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           A C  G+  E A E L+EM   G  P V   +  ++    +   + A  +  +M  +G  
Sbjct: 436 A-CGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLS 494

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            ++ T+NS+I+   K  + E  V++   +   G+  DV +Y   I A  K    + A +L
Sbjct: 495 PNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQL 554

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           L  +   G KP    Y   +    + G++ +A     +M   G  PN   Y   I  CG+
Sbjct: 555 LKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGK 614

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G ++  A   L EM   G TP    +    D     G+    E ++LL
Sbjct: 615 GEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWK--EAVDLL 660



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 133/304 (43%), Gaps = 7/304 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T + +I+   K G    A+++  +    +    V+ Y+S++ A    + +  A  L+
Sbjct: 251 STRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLL 310

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +M  +G  P+  +Y   ++A     + +EA + L+EM+  G  P V   +         
Sbjct: 311 EQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVN 370

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G    A +++ +M  QG   +  ++NS ++   K G+ E  V++   +  +G   D+ ++
Sbjct: 371 GRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISF 430

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
              I A  +    + A  LL  +   G  P    Y   I+   R  ++ +A   F EM  
Sbjct: 431 NSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPT 490

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT--DGLKNCGKH 313
           +G  PN   Y  +I  C +G ++  A   L  M   G+ P     D+++    ++ CGK 
Sbjct: 491 RGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAP-----DVISYNSAIEACGKG 545

Query: 314 DLAE 317
           +  E
Sbjct: 546 EQWE 549



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 21/272 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-REAQEFLQEM 113
           + + L AL E K+  G+              D  +Y I + A CS+G+    A   L+EM
Sbjct: 91  WRTALAALDEFKISGGSL-------------DTTSYNIAIAA-CSNGRQWATAVRLLREM 136

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK--QGFVLDLETFNSLIETICKSG 171
             +G  P V   +  +      G  + A  ++ +M+   +G   D+ T+NS I      G
Sbjct: 137 PTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGG 196

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +  +++   +   G+  ++ TY   I A +K    +EA  LL  ++E G  P    Y 
Sbjct: 197 RWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYN 256

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           P+I    + G++ +A     +M     P +   Y+ +I  CGRG R+ EA + L +M   
Sbjct: 257 PVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQ 316

Query: 292 GLTPISRCFDLVTDGLKNCGKHD-LAEKIELL 322
           G++P    ++   D    C K D   E ++LL
Sbjct: 317 GVSPNVISYNSAIDA---CAKGDRWKEALDLL 345



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 113/277 (40%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +  I      G    A+++  +  A      ++ YNS + A  + + +  A  L+  +
Sbjct: 184 TYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEV 243

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +GF P  RTY  +++A    G+  EA + L +M        V     ++         
Sbjct: 244 IEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRW 303

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ +M  QG   ++ ++NS I+   K    +  +++   +  +GL   V +Y   
Sbjct: 304 KEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSA 363

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
             A +  G   EA  LL  +   G  P    Y   +    + GQ++ A      M   G 
Sbjct: 364 TAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGS 423

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   +   I  CGRG ++  A   L EM   GLTP
Sbjct: 424 DPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTP 460



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 112/277 (40%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I   G+      A+++  +         V+ YNS + A  +   +  A  L+R M
Sbjct: 289 SYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREM 348

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP   +Y     A   +G+  EA E L+EM  +G  P     +  +      G  
Sbjct: 349 TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW 408

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++  M   G   D+ +FNS I+   +  + E  VE+   +   GL  +V TY   
Sbjct: 409 EKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSA 468

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  ++    EA  L   +   G  P    Y  +I    +  Q++ A    + M  +G 
Sbjct: 469 IEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGV 528

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y   I  CG+G ++  A   L  M   G  P
Sbjct: 529 APDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKP 565



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 6/273 (2%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK-MREAQEFL 110
           V+ YNS + A      +  A  L+ +M+ +G  P+  TY   + A C+ G+   EA + L
Sbjct: 182 VVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGA-CAKGRRWEEAMDLL 240

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           +E+ ++GF P  R  + ++      G    A  ++ +M+      D+ +++S+I    + 
Sbjct: 241 EEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRG 300

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
              +  +++   +   G+  +V +Y   I A +K     EA  LL  +   G  P    Y
Sbjct: 301 RRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISY 360

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
                     G++ +A     EM  +G  PN   Y   +  C +GG++ +A   L  M+ 
Sbjct: 361 NSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMST 420

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAE-KIELL 322
           +G  P    F+   D    CG+    E  +ELL
Sbjct: 421 VGSDPDIISFNSAIDA---CGRGQQWETAVELL 450


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 132/289 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++++  +   G + +  ++F+          +  +N L+ A     +   A  +   M
Sbjct: 361 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  ++ A C  GKM +A E   +M D+G  P       L+QG    G L
Sbjct: 421 RDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+++++++  G  LD+  F+S+I  +CK G V     ++     +GL      Y +L
Sbjct: 481 LKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G +++A R+   +V  G +P   +Y  ++ G  + G+ D+    F EM  KG 
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+  +Y ++I      GR V A     EMTE G+      +++V  GL
Sbjct: 601 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGL 649



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 2/280 (0%)

Query: 16  SPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  +  S +I+ F K G V+ A ++F +          + Y+S++ ALC+ +    A A
Sbjct: 216 SPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ KG +P+  TY  L+  + S+G+ +EA    +EM      P V    +L+  L 
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   ++ ++  ++      G +    +++  +   G+  D+ 
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 395

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G  P++  Y  LI      G  ++A   + E+   G+
Sbjct: 456 IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 131/305 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +++     TLS+++    K+G +  A +VF+          V  Y  +L        
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC 374

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L   M+  G  PD  T+ +L+ A+ + G + +A     EM D G  P V     
Sbjct: 375 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G ++ A +  N+MI QG   D   ++ LI+  C  G +    E+   +   G
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNG 494

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  +  +I  + K G + +A  +    V  G  P   +Y+ ++ G    G+ + A 
Sbjct: 495 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKAL 554

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN  VY  L+    + GR  E  +   EM + G+ P +  ++++ DGL
Sbjct: 555 RVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 614

Query: 308 KNCGK 312
              G+
Sbjct: 615 FEAGR 619



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 140/296 (47%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ Y++++    +    + A  L + M+++G  PD 
Sbjct: 196 GKSGQADDLLRMMAEGGAV-CSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDF 254

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ +V+A C +  M +A+ FL++M +KG  P     + L+ G  + G  + A ++  +
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +   + D+ T + L+ ++CK G+++   +++ ++   G   +V +Y I++   +  G 
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC 374

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 375 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    +  +  G   C    L +  EL+ 
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF--CTHGSLLKAKELIS 488



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTD 163

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V    
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYS 223

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   D  T++S++  +CK+  ++        +   
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK 283

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  +  TY  LI   S  G   EA R+   +      P     + ++  + + G+  +A
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 343

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  PN   YT+++      G  V+  +    M   G+ P    F+++   
Sbjct: 344 RDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 403

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 404 YANCGMLDKA 413



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G V +A  +F+           ++Y+ L+   C V     A  +   M+
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  KG  P     ++++ GL  AG   
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  ++  T+N ++  + K+   +  + ++  +  + +  ++ T   +I
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 681

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + +   ++EA  L  ++   G  P    Y+ +I  + + G  ++A   FS M+  G  
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           P+  +   ++    +    V A  YL ++ E
Sbjct: 742 PDSRLLNHVVRELLKKNEIVRAGAYLSKIDE 772



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/373 (20%), Positives = 142/373 (38%), Gaps = 70/373 (18%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    +LM    ++    T +++I+ +   G++D A+ +FN+      +  V+ Y +++ 
Sbjct: 378 MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 437

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--- 117
           ALC +     A     +MI +G  PDK  Y  L+  +C+ G + +A+E + E+ + G   
Sbjct: 438 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHL 497

Query: 118 --------------------------------FNPPVRGRDLLVQGLLNAGYLESAKQMV 145
                                            +P      +L+ G    G +E A ++ 
Sbjct: 498 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF 557

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           + M+  G   +   + +L+   CK G ++  + ++  + + G+      Y I+I  + +A
Sbjct: 558 DAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 617

Query: 206 GMIDEAFRLLHNLVEDGHKP------------------------FPSLYA---------- 231
           G    A    H + E G                           F  L A          
Sbjct: 618 GRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 677

Query: 232 -PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I GMF+  + ++A   F+ +   G  P    Y+++IT   + G   EA +    M  
Sbjct: 678 NTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQN 737

Query: 291 MGLTPISRCFDLV 303
            G  P SR  + V
Sbjct: 738 AGCEPDSRLLNHV 750



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 76/164 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++++  T ++++    K+   D A+ +F +  A N +  ++  N+++  + + + 
Sbjct: 630 MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRR 689

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   + R G VP   TY+I++      G + EA++    M + G  P  R  + 
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +V+ LL    +  A   ++K+ ++ F L+  T   L++     G
Sbjct: 750 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|297820862|ref|XP_002878314.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324152|gb|EFH54573.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 475

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 136/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M       + +T +L+I   G+ GL   AV  F K   FN +     YN++L 
Sbjct: 170 MWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILN 229

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  VK +     +  +M+  GF PD  TY IL+      GKM        EM+  G +P
Sbjct: 230 SLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGLSP 289

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A   +N M + G  L +  + +LI+ + ++G +E C    
Sbjct: 290 DFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFL 349

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   DV  Y ++I     +G +++A  +   +  +G  P    Y  +I+G+   
Sbjct: 350 DEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMA 409

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A     EM+ +G  PN  VY+ L++   + G+  EA   + +M + G
Sbjct: 410 GEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIRDMVKKG 461



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 125/309 (40%), Gaps = 41/309 (13%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-Q 107
           +  V  Y+ L+    E   +   + L+  M++ GF    RT+ +L+   CS G+   A Q
Sbjct: 148 RHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLI---CSCGEAGLAKQ 204

Query: 108 EFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
             +Q M  K FN  P     + ++  LL     +  + +  +M++ GF  D+ T+N L+ 
Sbjct: 205 AVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYEQMLEDGFSPDVLTYNILLW 264

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKI---------------------------- 197
           T  + G+++    ++  + + GL  D  TY I                            
Sbjct: 265 TNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGIDL 324

Query: 198 -------LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
                  LI  +S+AG ++     L  +V+ G +P    Y  +I G    G+ + A   F
Sbjct: 325 SVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELEKAKEMF 384

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM ++G  PN   Y  +I      G F EA   L EM   G  P    +  +   L+  
Sbjct: 385 KEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRKA 444

Query: 311 GKHDLAEKI 319
           GK   A K+
Sbjct: 445 GKLSEARKV 453



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T+  MK   + +S    + +I+   + G ++      ++     C+  V+ Y  ++    
Sbjct: 313 TLNHMKEVGIDLSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYV 372

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                  A  + + M  +G +P+  TY  ++   C +G+ REA   L+EM  +G NP   
Sbjct: 373 VSGELEKAKEMFKEMTVEGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFV 432

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
               LV  L  AG L  A++++  M+K+G  + L
Sbjct: 433 VYSTLVSYLRKAGKLSEARKVIRDMVKKGHYVHL 466



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 6/197 (3%)

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F   V    LL++     G  ++  ++V++M++ GF     TFN LI +  ++G  +  V
Sbjct: 147 FRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAV 206

Query: 178 EMYYSVCKLGLCADVSTYKILIPA---VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +             +Y  ++ +   V +  +I+  +     ++EDG  P    Y  ++
Sbjct: 207 VQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVY---EQMLEDGFSPDVLTYNILL 263

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
              +R G+ D     F EM   G  P+   Y +L+ + G+G + + A   L  M E+G+ 
Sbjct: 264 WTNYRLGKMDRFDRLFDEMARDGLSPDFYTYNILLHILGKGNKPLAALTTLNHMKEVGID 323

Query: 295 PISRCFDLVTDGLKNCG 311
                +  + DGL   G
Sbjct: 324 LSVLHYTTLIDGLSRAG 340


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++I   G+ G V+ A++VFN+         V  Y++++ A         A  + + M +
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 81  KGFVPDKRTYAILVNAWCSSG--KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            G  P+  TY  +++A C  G   +++A +  +EM  +G  P     + L+         
Sbjct: 263 AGCKPNLITYNTIIDA-CGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLW 321

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E ++++  +M ++G   D+ T+N+LI+ +CK G++E    +  S+    +  +V TY  +
Sbjct: 322 EDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTM 381

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G  +EA  L H++ E G +P    Y  +I    + G+FDDA     +M+  G 
Sbjct: 382 IDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGL 441

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y  LI   G+ G++ +AA    +M   GL P    +  + D     G H  A  
Sbjct: 442 KADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATS 501

Query: 319 I 319
           I
Sbjct: 502 I 502



 Score =  113 bits (283), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 139/316 (43%), Gaps = 1/316 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           K  + MK      +  T + II+  GK G+ +  A+++F +      +   + +NSL+  
Sbjct: 255 KVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAV 314

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                L+  +  +   M R+G   D  TY  L++A C  G+M  A   +  M  K  +P 
Sbjct: 315 CSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPN 374

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     ++ G    G  E A  + + M + G   D  ++N+LI+   K G  +  +    
Sbjct: 375 VVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACK 434

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + ++GL ADV TY  LI A  K G   +A  L   +  +G  P    Y+ +I    + G
Sbjct: 435 DMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAG 494

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
              DA   F E K  G  P+  +Y+ LI  C + G   +A   L EMT+ G+ P    ++
Sbjct: 495 MHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYN 554

Query: 302 LVTDGLKNCGKHDLAE 317
            + D     G+ D  E
Sbjct: 555 SLIDAYGRNGQVDNVE 570



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 7/288 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+S +  T S +I+ +GK G  + A+ +++       +   + YN+L+    ++  
Sbjct: 366 MRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGR 425

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A    + M R G   D  TY  L++A+   GK ++A     +M  +G  P V     
Sbjct: 426 FDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSA 485

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AG  + A  +  +  + G   D+  ++SLI++ CK G VE  V +   + + G
Sbjct: 486 LIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAG 545

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII-KGMFRRGQFDD- 245
           +  ++ TY  LI A  + G +D       N+  +           II K +  +   +D 
Sbjct: 546 IQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDH 605

Query: 246 -----AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
                A   F EM+  G  PN   ++ ++  C R     EA+  L +M
Sbjct: 606 TGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLEQM 653


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/265 (29%), Positives = 119/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+  LCE    H A     RM   G  P  RTY +LV A C SG+  EA     EM 
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMR 317

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P V    +L+  L   G ++ A +M+N+M+++G    +  FN+LI + CK G +E
Sbjct: 318 ERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMME 377

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V +   +    +C +V TY  LI    +   +D A  LL+ +VE    P    Y  +I
Sbjct: 378 DAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLI 437

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   G  D A   F  M   G  P++  +   +    R GR  EA   L  + E  + 
Sbjct: 438 HGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK 497

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
                +  + DG    GK + A  +
Sbjct: 498 ANEHAYTALIDGYCKAGKIEHAASL 522



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 130/290 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    + G +  A+E + +     C   V  Y  L+ ALCE      A +L   M  +G
Sbjct: 261 LIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERG 320

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY +L++  C  G+M EA + L EM +KG  P V   + L+      G +E A 
Sbjct: 321 CEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAV 380

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M  +    ++ T+N LI   C+   ++  + +   + +  L  DV TY  LI  +
Sbjct: 381 GVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGL 440

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G++D A RL   ++ DG  P    +   +  + R G+  +A      +K K    N 
Sbjct: 441 CEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANE 500

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             YT LI    + G+   AA+    M      P S  F+++ DGL+  GK
Sbjct: 501 HAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGK 550



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 135/289 (46%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM+   +  + +T + +I  F +   +D A+ + NK         V+ YN+L+  LCEV 
Sbjct: 385 LMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVG 444

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           +   A  L R MIR GF PD+ T+   +   C  G++ EA + L+ + +K          
Sbjct: 445 VVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYT 504

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ G   AG +E A  +  +M+ +  + +  TFN +I+ + K G+V+  + +   + K 
Sbjct: 505 ALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKF 564

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +   + TY IL+  V K    D A  +L+ L+  G++P    Y   IK    +G+ ++A
Sbjct: 565 DVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEA 624

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
                ++K +G   +  +Y +LI   G  G    A   L  M   G  P
Sbjct: 625 EEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEP 673



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 124/277 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +D A+++ N+         V+ +N+L+ + C+  +   A  ++  M
Sbjct: 327 TYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLM 386

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+ RTY  L+  +C    M  A   L +M +   +P V   + L+ GL   G +
Sbjct: 387 ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVV 446

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA ++   MI+ GF  D  TFN+ +  +C+ G V    ++  S+ +  + A+   Y  L
Sbjct: 447 DSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTAL 506

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KAG I+ A  L   ++ +   P    +  +I G+ + G+  DA     +M     
Sbjct: 507 IDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDV 566

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P    Y +L+    +   F  A   L  +   G  P
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQP 603



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 130/288 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++    + G    A+ +F +     C+  V  Y  L+  LC+      A  ++  
Sbjct: 291 RTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNE 350

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ KG  P    +  L+ ++C  G M +A   L  M  K   P VR  + L+ G      
Sbjct: 351 MVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKS 410

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A  ++NKM++     D+ T+N+LI  +C+ G V+    ++  + + G   D  T+  
Sbjct: 411 MDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNA 470

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +  + + G + EA ++L +L E   K     Y  +I G  + G+ + A   F  M  + 
Sbjct: 471 FMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
             PN   + ++I    + G+  +A   + +M +  + P    ++++ +
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 33/319 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E +K  ++  +    + +I+ + K G +++A  +F +  A  C    + +N ++  L
Sbjct: 486 QILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL 545

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +      A  L+  M +    P   TY ILV           A E L  +   G+ P V
Sbjct: 546 RKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNV 605

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE----------------- 165
                 ++   + G LE A++MV K+  +G +LD   +N LI                  
Sbjct: 606 VTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRR 665

Query: 166 ---TICKSGEVEFCVEMYYSVCK---------LGLCADVSTYKILIPAVSKAGMIDEAFR 213
              T C+   + + + M + V +         +GL  DVS   I +        ID    
Sbjct: 666 MFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGL--DVSLTNISVDNTDIWSKIDFGIT 723

Query: 214 --LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   + E G  P  + Y+ +I G+ + G+ + AF  +  M+  G  P+  ++  L++ 
Sbjct: 724 TVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSS 783

Query: 272 CGRGGRFVEAANYLVEMTE 290
           C + G F EA   L  M E
Sbjct: 784 CCKLGMFGEAVTLLDSMME 802



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 131/315 (41%), Gaps = 30/315 (9%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +++  +  T ++++EE  K    D A E+ N+  +   Q  V+ Y + + A C 
Sbjct: 558 VEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCS 617

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++ ++  +G + D   Y +L+NA+   G +  A   L+ M   G  P    
Sbjct: 618 QGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLT 677

Query: 125 RDLLVQGLLNAGYLESAKQMV-----------------------------NKMIKQGFVL 155
             +L++ L+   + +     V                              KM + G V 
Sbjct: 678 YSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVP 737

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L T++ LI  +CK G +     +Y+ + + G+      +  L+ +  K GM  EA  LL
Sbjct: 738 NLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLL 797

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            +++E  H      Y  +I G+F +   + A   F  +   G+  +   + +LI    + 
Sbjct: 798 DSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKT 857

Query: 276 GRFVEAANYLVEMTE 290
           G +V+  + L+ + E
Sbjct: 858 G-YVDQCSELLNLME 871



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 105/248 (42%), Gaps = 29/248 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC--------------EVK 66
           +L+I  +G  GL+D+A  V  +     C+   L Y+ L+  L               +V 
Sbjct: 644 NLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVS 703

Query: 67  L---------------FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           L               F     L  +M   G VP+  TY+ L+N  C  G++  A     
Sbjct: 704 LTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYH 763

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M + G +P     + L+      G    A  +++ M++   +  LE++  LI  + +  
Sbjct: 764 HMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQM 823

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E    ++ S+ + G   D   +K+LI  ++K G +D+   LL+ + ++G +  P  Y+
Sbjct: 824 NKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYS 883

Query: 232 PIIKGMFR 239
            +++ + R
Sbjct: 884 MLMQELNR 891



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           +F K     C   +  Y+ L+  LC+V   + A++L   M   G  P +  +  L+++ C
Sbjct: 726 LFEKMAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCC 785

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G   EA   L  M +      +    LL+ GL      E A+ +   +++ G+  D  
Sbjct: 786 KLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEV 845

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            +  LI+ + K+G V+ C E+   + K G      TY +L+  +++A
Sbjct: 846 AWKVLIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLMQELNRA 892



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/153 (21%), Positives = 70/153 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T S +I    K G ++ A  +++           +++NSLL + C++ +F  A  L+  
Sbjct: 740 NTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDS 799

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+    +    +Y +L+          +A+     +   G+N       +L+ GL   GY
Sbjct: 800 MMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGY 859

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           ++   +++N M K G  L  ET++ L++ + ++
Sbjct: 860 VDQCSELLNLMEKNGCRLHPETYSMLMQELNRA 892


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 132/270 (48%), Gaps = 4/270 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C+ + F     L+  M   G  PD  +Y  L+NA   SG + +A E   EMS
Sbjct: 152 YNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMS 211

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEV 173
            +G NP V   ++L+ G L  G    A ++  +++ +  V   +ET+N +I  +CK G++
Sbjct: 212 VRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKL 271

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +EM+  + K     D+ T+  +I  +SKAG  + A ++   ++E G  P    Y  +
Sbjct: 272 DESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAM 331

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G+FR G+ +  F  ++ M  K +  N   Y MLI       +  +A  Y   + E GL
Sbjct: 332 LSGLFRTGKLNKCFELWNVMS-KNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGL 390

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              S  + L+ +GL  C    L + + +LE
Sbjct: 391 KADSTTYGLLINGL--CKNGYLNKALRILE 418



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 37/330 (11%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  LS   +I    K G + +AVE+F++ +       V+ YN L+        F  A 
Sbjct: 180 LNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKAN 239

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            + +R++ +  V P   TY I++N  C  GK+ E+ E    M     +P +     ++ G
Sbjct: 240 EIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHG 299

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY----------- 180
           L  AG   +A+++  +MI+ G   D+ T+N+++  + ++G++  C E++           
Sbjct: 300 LSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNI 359

Query: 181 -----------------YSVC------KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
                             ++C      + GL AD +TY +LI  + K G +++A R+L  
Sbjct: 360 VSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEE 419

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
              +G       Y+ ++ G+ ++G  + A     +MK      N  V+  LI    R  +
Sbjct: 420 AENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFK 479

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             EA + L EM      P    ++ + +GL
Sbjct: 480 LEEAISVLREMKSKDCAPTVVSYNTIINGL 509



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 149/355 (41%), Gaps = 38/355 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    LS   +T + ++    + G ++   E++N  +  NC   ++ YN L+  L
Sbjct: 311 KVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCN-IVSYNMLIQGL 369

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + K    A    + +  +G   D  TY +L+N  C +G + +A   L+E  ++G +   
Sbjct: 370 LDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDT 429

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY-- 180
                +V GL   G LE A +++++M K    L+   FNSLI    ++ ++E  + +   
Sbjct: 430 FAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLRE 489

Query: 181 ------------YSVCKLGLCA---------------------DVSTYKILIPAVSKAGM 207
                       Y+    GLC                      D+ TY +LI  + +   
Sbjct: 490 MKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEK 549

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +D A  L H  +    KP   ++  II G+    + D A   F++M+     P+   +  
Sbjct: 550 VDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNT 609

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           ++    + G  VEA      + E GL P    +++   GL +C +  +++ IE L
Sbjct: 610 IMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCAR--VSDAIEFL 662



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 7/273 (2%)

Query: 42  KCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSS 100
           +CT   C + V L     +A C +     A  L + M+   G  P  R++  ++NA+  S
Sbjct: 73  RCT---CSEDVALSAIKAYAKCSMP--DQALNLFQNMVDIFGCNPGIRSFNSMLNAFIES 127

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
            + REA+ F       G +P ++  ++L++        E  K ++  M + G   D+ ++
Sbjct: 128 NQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSY 187

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV- 219
            +LI  + KSG +   VE++  +   G+  DV  Y ILI    + G   +A  +   L+ 
Sbjct: 188 GTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLT 247

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           E    P    Y  +I G+ + G+ D++   ++ MK     P+   ++ +I    + G F 
Sbjct: 248 ESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFN 307

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            A     EM E GL+P  R ++ +  GL   GK
Sbjct: 308 AAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK 340



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/233 (21%), Positives = 116/233 (49%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  MK     ++    + +I  + +   ++ A+ V  +  + +C   V+ YN+++  LC+
Sbjct: 452 IHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCK 511

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  AY  ++ M+ +G  PD  TY++L++  C   K+  A     +  +K   P ++ 
Sbjct: 512 AERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQM 571

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ GL  A  ++ A ++  +M +   V DL T N+++E + K+G+    ++++  + 
Sbjct: 572 HNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRIL 631

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           + GL  D+ +Y I    +     + +A   L++ ++ G  P    +  +++ +
Sbjct: 632 EAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAV 684



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 118/249 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S ++    K G+++ AVE+ ++      +    ++NSL+           A +++R M  
Sbjct: 433 SSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKS 492

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K   P   +Y  ++N  C + +  +A   L+EM ++G  P +    LL+ GL     ++ 
Sbjct: 493 KDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDM 552

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  + ++ I +    DL+  N +I  +C + +V+  +E++  + ++    D+ T+  ++ 
Sbjct: 553 ALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIME 612

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + KAG   EA ++   ++E G +P    Y    KG+    +  DA  F  +   +G  P
Sbjct: 613 GLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILP 672

Query: 261 NRPVYTMLI 269
           N P + +L+
Sbjct: 673 NAPTWNVLV 681



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 131/299 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +L+    L     T  L+I    K+G ++ A+ +  +            Y+S++  LC+ 
Sbjct: 383 QLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKK 442

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A  LI +M +     +   +  L+N +  + K+ EA   L+EM  K   P V   
Sbjct: 443 GMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSY 502

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++ GL  A     A   + +M+++G   D+ T++ LI+ +C+  +V+  + +++    
Sbjct: 503 NTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCIN 562

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             L  D+  + I+I  +  A  +D A  +   + +    P    +  I++G+++ G   +
Sbjct: 563 KRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVE 622

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           A   +  +   G  P+   Y +         R  +A  +L +  + G+ P +  ++++ 
Sbjct: 623 ALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLV 681



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     VD A+E+F +    NC   ++ +N+++  L +      A  +  R++  G  
Sbjct: 577 HGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQ 636

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           PD  +Y I     CS  ++ +A EFL +  D+G  P     ++LV+ +++
Sbjct: 637 PDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVD 686


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 126/254 (49%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+ A  +      A  +  +M ++G  PD  TY  ++   C SG++ +A  + ++M
Sbjct: 343 VYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQM 402

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            D+G +P     + L+ GL      E A++++ +M+ +G  L+   FNS+I++ CK G V
Sbjct: 403 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 462

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               +++  + ++G+  D+ TY  LI     AG +DEA +LL  +V  G KP    Y  +
Sbjct: 463 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTL 522

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  +  +  DA   F EM+  G  P+   Y +++    +  R   A    V +TE G 
Sbjct: 523 INGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGT 582

Query: 294 TPISRCFDLVTDGL 307
                 ++++  GL
Sbjct: 583 QIELSTYNIILHGL 596



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 145/306 (47%), Gaps = 5/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G    A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 198 SYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSM 257

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL-----LVQGLL 133
           ++ G +P+ RTY  +++ +CSSG+ +EA  FL+++   G  P     D+     L+QG  
Sbjct: 258 VKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYA 317

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G L     +++ M++ G   D   +N LI    K G+V+  + ++  + + GL  D  
Sbjct: 318 TKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAV 377

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  +I  + K+G +++A      ++++G  P   +Y  +I G+    +++ A     EM
Sbjct: 378 TYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEM 437

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G   N   +  +I    + GR +E+      M  +G+ P    +  + DG    GK 
Sbjct: 438 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 497

Query: 314 DLAEKI 319
           D A K+
Sbjct: 498 DEAMKL 503



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 112/256 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +  Y +LL          G +AL+  M+R G  PD   Y IL+ A+   GK+ EA     
Sbjct: 306 IATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFS 365

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +G NP       ++  L  +G +E A     +MI +G       +NSLI  +C   
Sbjct: 366 KMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 425

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + E   E+   +   G+C +   +  +I +  K G + E+ +L   +V  G KP    Y+
Sbjct: 426 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 485

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G    G+ D+A    S M   G  PN   Y  LI    +  R  +A     EM   
Sbjct: 486 TLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESS 545

Query: 292 GLTPISRCFDLVTDGL 307
           G++P    ++++  GL
Sbjct: 546 GVSPDIITYNIILQGL 561



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK---GFVPDKRTYAILVN 95
           V  + T  +C   V     LL  LC+      A  L   M      G  PD  +Y  ++N
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVIN 204

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G   +A     EM D+  +P V     ++  L     ++ A +++  M+K G + 
Sbjct: 205 GFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMP 264

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLG-----LCADVSTYKILIPAVSKAGMIDE 210
           +  T+ S++   C SG+ +  +     V   G     L  D++TY  L+   +  G +  
Sbjct: 265 NCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVG 324

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
              LL  +V +G  P   +Y  +I    ++G+ D+A   FS+M+ +G  P+   Y  +I 
Sbjct: 325 MHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIG 384

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +  + GR  +A  Y  +M + GL+P +  ++ +  GL  C K + AE++ +LE+  R +
Sbjct: 385 ILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL-ILEMLDRGI 442



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 122/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 452 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVG 511

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 512 LKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 571

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  ++ + G  ++L T+N ++  +CK+   +  + M+ ++C + L  +  T+ I+I A+
Sbjct: 572 ELYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 631

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G   EA  L      +G  P    Y  + + +  +G  ++    F  M+  G   + 
Sbjct: 632 LKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 691

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 692 GMLNFIVRELLQRGEITRAGTYLSMIDE 719



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 139/319 (43%), Gaps = 3/319 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+  LC    
Sbjct: 367 MRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 426

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   +   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 427 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 486

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A ++++ M+  G   +  T+ +LI   CK   +   + ++  +   G
Sbjct: 487 LIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSG 546

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    DDA 
Sbjct: 547 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 606

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +  V  +  GL P    + L+ + +
Sbjct: 607 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENI 666

Query: 308 KNCGKHDLAEKIELLEVSL 326
              G   L E+++ L +S+
Sbjct: 667 IGQG---LLEELDQLFLSM 682



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 113/305 (37%), Gaps = 49/305 (16%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P   TYAIL+   C + ++      L  +  
Sbjct: 56  ALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVK 115

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V    +L++GL +    +
Sbjct: 116 KGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQ 175

Query: 140 SAKQMVNKMIK---QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A ++ + M      G   D+ ++ ++I    K G+       Y+ +    +  DV TY 
Sbjct: 176 EALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYS 235

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I A+ K   +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +++  
Sbjct: 236 SIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSD 295

Query: 257 GHPPNR-----PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           G  P+        Y  L+      G  V     L  M   G+ P    ++++       G
Sbjct: 296 GVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQG 355

Query: 312 KHDLA 316
           K D A
Sbjct: 356 KVDEA 360


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 133/272 (48%), Gaps = 1/272 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL-IRRMIRK 81
           +I   G+ G +++A+++F K  +  C   V+ YN+++ A+ E K      AL   +M   
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   TYAIL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAA 460

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+     G +   V+++  + KLG   DV TY  L+  
Sbjct: 461 NELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSG 520

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +AGMIDEA  L+ N+ E+G  P    +  I+ G+ + G    A   F++MK     P+
Sbjct: 521 MIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              Y  +++   R G F  AA  + EM   G 
Sbjct: 581 AVSYNTILSCLSRAGMFEMAAKLMREMKLKGF 612



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 43/361 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+TI+ M     SV P   S I++  GK  +V+ A+ VF +     C     +YN+L+ 
Sbjct: 143 MWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLIL 202

Query: 61  ------------------------------------ALCEVKLFHGAYALIRRMIRKGFV 84
                                               A  +++ +  A+ L   M   G  
Sbjct: 203 MLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLH 262

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P ++ Y  ++  +    K+  A   ++EM  KG  P V     L++GL   G ++ A  +
Sbjct: 263 PTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSL 322

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV-- 202
              M+K G   D+   N+LI  + ++G +E  ++++  +  L    +V TY  +I A+  
Sbjct: 323 FFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SKA    EA      +  +G  P    YA +I G  +  + + A     EM  KG PP  
Sbjct: 383 SKAPA-SEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCP 441

Query: 263 PVYTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             Y  LI   GR  R+ EAAN L  E+ E      +R + ++     NCG+  L++ ++L
Sbjct: 442 AAYCSLIDSLGRAKRY-EAANELFQELKENCGRSSARVYAVMIKHFGNCGR--LSDAVDL 498

Query: 322 L 322
            
Sbjct: 499 F 499



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 1/311 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  + MK   L  + +  + I+  + K   V+ A+ +  +     C   V  Y  L+  
Sbjct: 250 FRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKG 309

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +V     AY+L   M++ G  PD      L+N    +G++ +A +   +M      P 
Sbjct: 310 LGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPN 369

Query: 122 VRGRDLLVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           V   + +++ +  +    S A     KM   G      T+  LI+  CK+  VE  + + 
Sbjct: 370 VVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLL 429

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G     + Y  LI ++ +A   + A  L   L E+  +    +YA +IK     
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNC 489

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   F EMK  G  P+   Y  L++   R G   EA + +  M E G TP  +  
Sbjct: 490 GRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSH 549

Query: 301 DLVTDGLKNCG 311
           +++ +GL   G
Sbjct: 550 NIILNGLAKTG 560



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/318 (21%), Positives = 134/318 (42%), Gaps = 1/318 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E MK    + +  T + +I+  GK G VD+A  +F       C+  V+L N+L+  L
Sbjct: 286 RLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINIL 345

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPP 121
                   A  L  +M      P+  TY  ++ A + S     EA  + ++M   G  P 
Sbjct: 346 GRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPS 405

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ G      +E A  ++ +M ++GF      + SLI+++ ++   E   E++ 
Sbjct: 406 SFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQ 465

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +    +    Y ++I      G + +A  L   + + G  P    Y  ++ GM R G
Sbjct: 466 ELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAG 525

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             D+A      M+  G  P+   + +++    + G    A     +M E  + P +  ++
Sbjct: 526 MIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYN 585

Query: 302 LVTDGLKNCGKHDLAEKI 319
            +   L   G  ++A K+
Sbjct: 586 TILSCLSRAGMFEMAAKL 603



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 119/245 (48%), Gaps = 5/245 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W   E MK   ++ S  T +++I+ F K   V+ A+ +  +        C   Y SL+ 
Sbjct: 392 LW--FEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLID 449

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L   K +  A  L + +         R YA+++  + + G++ +A +   EM   G +P
Sbjct: 450 SLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSP 509

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + L+ G++ AG ++ A  ++  M + G   D+++ N ++  + K+G  +  +EM+
Sbjct: 510 DVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMF 569

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +  +  D  +Y  ++  +S+AGM + A +L+  +   G +     Y+ I++ +   
Sbjct: 570 TKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV--- 626

Query: 241 GQFDD 245
           G+ D+
Sbjct: 627 GKVDE 631



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 92/226 (40%), Gaps = 19/226 (8%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--SDKGFNPPVRGRDLLVQGLLNAGY 137
           R+ F  D  TY  L+     SG + E    +Q+M  S     P      L + G      
Sbjct: 117 RQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILG------ 170

Query: 138 LESAKQMVNKMIKQGFVLD-------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                +MVNK +   + +           +N+LI  +   G  E   E+Y  +C  G C+
Sbjct: 171 ---KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227

Query: 191 -DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  LI A  K    D AFRL   + E+G  P   +Y  I+   F+  + + A   
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRL 287

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             EMK KG  P    YT LI   G+ GR  +A +    M + G  P
Sbjct: 288 VEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKP 333


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 128/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++ +    + L   M 
Sbjct: 139 FNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA E   EM +KG  P       L+ G    G L+
Sbjct: 199 ASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +++ QG   DL T+N+LI   CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++E+  +    +Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YT+++    + G     +  L EM   G  P
Sbjct: 379 PDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVP 414



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A  +   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+++G V +  TF +LI+  CK+G++
Sbjct: 198 HASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKL 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +   GL  D+ TY  LI    K G + +   L+  +   G KP    Y  +
Sbjct: 258 DLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF +  +M  +    +  VYT LI+   + GR V+A   L EM  +GL
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTD 305
            P S  + +V +
Sbjct: 378 KPDSGTYTIVMN 389



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 119/256 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G++D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+ L   M+ KG VP+  T+  L++  C +GK+  A E  +++  +G +P +   
Sbjct: 220 SKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G L+  + ++++M  +G   D  T+ +LI+  CK G++E   E    + +
Sbjct: 280 NTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIE 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + K G   +A ++L  ++  G KP    Y  ++    + G  + 
Sbjct: 340 ENIRLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  GH P+
Sbjct: 400 GSKLLKEMQRDGHVPS 415



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      ++  L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK GE+     ++ ++ K GL   V ++  L+    K 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKM 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G++DE FRL + +   G +P    Y+ +I G+ +  + D+A   F EM  KG  PN   +
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + G+   A     ++   GL+P    ++ +  G   C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGF--CKKGDLKQTRDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   K    N +   ++Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCK 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  PD  TY I++N +C +G +    + L+EM   G  P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSV 416


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 135/285 (47%), Gaps = 2/285 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +     +  C+  +L++N L+  LC +      Y +  +M   G  P + TY  
Sbjct: 456 LDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNS 515

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L    C     + A + L+EM   G  P ++    +VQ L  +G +  A Q ++ M++ G
Sbjct: 516 LFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIG 575

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCADVSTYKILIPAVSKAGMIDEA 211
           F+ D+ T+++ +  +C +GEV+  + ++  + CK  L  DV  + ILI    K+  +DEA
Sbjct: 576 FLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYL-PDVVAHNILINGFRKSSKLDEA 634

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            +++  ++E G  P    Y  +I    + G+ + A  +  +M  +   P    YT LI  
Sbjct: 635 QKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDG 694

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               GR  EA     EM E G  P +  +    +GL+ CG+ + A
Sbjct: 695 FCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETA 739



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 117/271 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I E      ++    +FN+            YNSL + +C  K    A  L+R M   G
Sbjct: 481 LIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNG 540

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P  +    +V   C SG++ EA +FL  M   GF P +      + G+ N G ++ A 
Sbjct: 541 HPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDAL 600

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   +  + ++ D+   N LI    KS +++   ++   + + GL   V TY ++I   
Sbjct: 601 HLFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVC 660

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G I++A   L  +V +  +P    Y  +I G    G+ D+A   + EM+ KG  PN 
Sbjct: 661 CKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNN 720

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             YT  I    + GR   A  Y  EM   G 
Sbjct: 721 IAYTAFINGLRKCGRIETALTYFEEMVTKGF 751



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 147/331 (44%), Gaps = 24/331 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + +S +TLS+++  F K G VD A+++F K  ++     + +Y+ L+  LC+ K 
Sbjct: 271 MEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKD 330

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD---KGFNPPVRG 124
              A  L + M   G  PD R    ++ A+C  G       F+ E ++    G   P+  
Sbjct: 331 IARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVPL-- 388

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-------------------DLETFNSLIE 165
            +++++ L++ G +E+A Q++  M+  G  +                   + ++FN ++ 
Sbjct: 389 YNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVC 448

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +CK  +++  + +   +  LG    +  +  LI  +     ++E + + + + + G  P
Sbjct: 449 GLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTP 508

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +  G+ RR     A     EM+  GHPP     T ++      GR  EA  +L
Sbjct: 509 SEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFL 568

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             M ++G  P    +    +G+ N G+ D A
Sbjct: 569 DGMLQIGFLPDIVTYSAAMNGMCNTGEVDDA 599



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 118/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N ++  LC+VK    A AL + MI  G       +  L++  C+  ++ E      +M 
Sbjct: 443 FNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMK 502

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D G  P     + L  G+    Y ++A  ++ +M   G    ++    +++ +C SG V 
Sbjct: 503 DLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVT 562

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             V+    + ++G   D+ TY   +  +   G +D+A  L  ++    + P    +  +I
Sbjct: 563 EAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILI 622

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +  + D+A     EM  KG  P+   Y ++I +C + GR  +A +YL +M      
Sbjct: 623 NGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQ 682

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P    +  + DG  + G+ D A K+
Sbjct: 683 PTVITYTSLIDGFCSAGRPDEAIKL 707



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 6/233 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           ++P  L  ++   G  GL D AV  F+   A F C      YN LL AL +      A A
Sbjct: 136 MTPGALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQA 195

Query: 74  LIRRMIRK---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            +R M+ +   G V DK T   L+  +C++G+  +A +  Q MS+ G+        L+V 
Sbjct: 196 RLREMVARCGDGSV-DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMV- 253

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G ++ A +++  M   G  L  +T + L+    K G V+  ++M+  +   G   
Sbjct: 254 AFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVV 313

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           D++ Y +LI  + +   I  A +L   +   G  P   L   +I+   R G F
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDF 366



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F K   +D A ++  +         V+ YN ++   C+      A + + +M+ 
Sbjct: 619 NILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVY 678

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P   TY  L++ +CS+G+  EA +   EM +KG  P        + GL   G +E+
Sbjct: 679 EEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIET 738

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           A     +M+ +GF LD  +    I  +  +G 
Sbjct: 739 ALTYFEEMVTKGFELDTFSLLYFINFLISNGH 770



 Score = 46.6 bits (109), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 49/116 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    L  S  T +L+I+   K G ++ A+   +K      Q  V+ Y SL+   
Sbjct: 636 KIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGF 695

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           C       A  L   M  KG  P+   Y   +N     G++  A  + +EM  KGF
Sbjct: 696 CSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVTKGF 751


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   +    L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 125/270 (46%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 144 FFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 203

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 204 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 263

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 264 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 323

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +R + ++ +    C K D+ +  +LL+
Sbjct: 384 KPDARTYTMIINEF--CKKGDVWKGXKLLK 411



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 121/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 226 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GXKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 113 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWG 172

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M+  G   D+ T++ LI  +CK  +++   
Sbjct: 173 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDAN 232

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDE 352

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G+   AEK+  E+L V L+
Sbjct: 353 VAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 2/238 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 71  DJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 250

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 306



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 139/334 (41%), Gaps = 35/334 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+ F + G +DNA+   +K T  + +  V  YNSL+   C++     A      M
Sbjct: 229 TYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEM 288

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG  P   TY  L++ +C+ G+  +A +   EM+ KG +P       ++ GL  A  +
Sbjct: 289 IDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMM 348

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M ++  +    T+N +IE  C+SG +     +   +   G   D  TY+ L
Sbjct: 349 AEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPL 408

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA------------ 246
           I  +   G + EA   + +L +D HK     Y+ ++ G  + G+F DA            
Sbjct: 409 ISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGV 468

Query: 247 -----------------------FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                                  F    EM   G  P+  +YT +I    + G   EA  
Sbjct: 469 AMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFG 528

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
               M + G  P    +  + +GL   G  D AE
Sbjct: 529 LWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAE 562



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 132/318 (41%), Gaps = 1/318 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K    M    +S +  T + II    +  ++  A+ +F +          + YN ++  
Sbjct: 317 FKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEG 376

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A+ L+  M+ KGFVPD  TY  L++  CS G++ EA+EF+ ++        
Sbjct: 377 HCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLN 436

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 LV G    G  + A      M+++G  +DL  +  LI+   +  +      +  
Sbjct: 437 NMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLK 496

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL  D   Y  +I   SKAG + EAF L   +V++G  P    Y  +I G+ + G
Sbjct: 497 EMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAG 556

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             D A     E  +    PN   Y   +    RGG   +A      M + G    +  ++
Sbjct: 557 LMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLATTVSYN 615

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++  G    GK + A K+
Sbjct: 616 ILIRGFCRLGKIEEATKL 633



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 124/288 (43%), Gaps = 27/288 (9%)

Query: 46  FN-CQQCVLLYNSLLFALCEVKL--------------------------FHGAYALIRRM 78
           FN C+  +++YN L+  LC+ +                           F+ A  L + M
Sbjct: 159 FNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYGKFNEAELLFKEM 218

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   +  TY+IL++++C  G+M  A  FL +M+       V   + L+ G    G  
Sbjct: 219 GEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNA 278

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            +AK   ++MI +G    + T+ SLI   C  GE     ++Y  +   G+  +  T+  +
Sbjct: 279 SAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAI 338

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + +A M+ EA RL   + E    P    Y  +I+G  R G   +AF    EM  KG 
Sbjct: 339 ISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGF 398

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            P+   Y  LI+     GR  EA  ++ ++ +      + C+  +  G
Sbjct: 399 VPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHG 446



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 129/308 (41%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +  T + +I  +   G    A +V+N+ TA         + +++  LC   +   A 
Sbjct: 293 LTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAI 352

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M  +  +P + TY +++   C SG + EA   L EM  KGF P       L+ GL
Sbjct: 353 RLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGL 412

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G +  AK+ V+ + K    L+   +++L+   CK G  +  V     + + G+  D+
Sbjct: 413 CSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDL 472

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y ILI   ++       F LL  +   G +P   +Y  +I    + G   +AF  +  
Sbjct: 473 VCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDI 532

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  PN   YT LI    + G   +A     E     +TP    +    D L   G 
Sbjct: 533 MVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGN 592

Query: 313 HDLAEKIE 320
            + A ++ 
Sbjct: 593 MEKAVQLH 600



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 136/332 (40%), Gaps = 26/332 (7%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LMK  NL    +TLS ++    +    ++ + +F+   + N Q  + +Y++++ +LCE+K
Sbjct: 86  LMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELK 145

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS-------------------------- 100
            F+ A  +I  M           Y +L++  C S                          
Sbjct: 146 DFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYY 205

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           GK  EA+   +EM +KG         +L+      G +++A   ++KM K      +  +
Sbjct: 206 GKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPY 265

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           NSLI   CK G        +  +   GL   V TY  LI      G   +AF++ + +  
Sbjct: 266 NSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTA 325

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    +  II G+ R     +A   F EMK +   P+   Y ++I    R G   E
Sbjct: 326 KGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISE 385

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           A + L EM   G  P +  +  +  GL + G+
Sbjct: 386 AFHLLDEMVGKGFVPDTYTYRPLISGLCSVGR 417



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 1/222 (0%)

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L++ M   G  PD   Y  +++    +G ++EA      M D+G  P V     L+ G
Sbjct: 492 FGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALING 551

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AG ++ A+ +  + +      +  T+   ++ + + G +E  V++++++ K G  A 
Sbjct: 552 LCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLAT 610

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             +Y ILI    + G I+EA +LLH + ++   P    Y+ II    +R    +A   + 
Sbjct: 611 TVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWH 670

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            M  KG  P+   Y+ L+  C   G   +A     EM   G+
Sbjct: 671 TMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGM 712



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 105/240 (43%), Gaps = 17/240 (7%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++E   HGL  +AV                +Y +++    +      A+ L   M+ +G
Sbjct: 494 LLKEMHNHGLRPDAV----------------IYTNMIDRHSKAGNLKEAFGLWDIMVDEG 537

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+  TY  L+N  C +G M +A+   +E       P        +  L   G +E A 
Sbjct: 538 CLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAV 597

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+ + M+K GF+    ++N LI   C+ G++E   ++ + +    +  D  TY  +I   
Sbjct: 598 QLHHAMLK-GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQ 656

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   + EA +L H +++ G KP    Y+ ++ G    G+ + AF    EM  +G   N 
Sbjct: 657 CKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNH 716



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 122/277 (44%), Gaps = 11/277 (3%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++L+   C+   F  A +  R M+ +G   D   YAIL++        R     L+EM 
Sbjct: 440 YSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMH 499

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G  P       ++     AG L+ A  + + M+ +G + ++ T+ +LI  +CK+G   
Sbjct: 500 NHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAG--- 556

Query: 175 FCVEMYYSVCKLGLCADVS----TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
             ++    + K  L +DV+    TY   +  +++ G +++A +L H +++ G       Y
Sbjct: 557 -LMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK-GFLATTVSY 614

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I+G  R G+ ++A      M      P+   Y+ +I    +     EA      M +
Sbjct: 615 NILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLD 674

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            GL P +  +  +  G   C   +L +  EL +  +R
Sbjct: 675 KGLKPDTLAYSFLVHGC--CIAGELEKAFELRDEMIR 709



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 109/273 (39%), Gaps = 28/273 (10%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M     +P+ RT + L+N      +  +      ++      P +     +V+ L   
Sbjct: 85  RLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCEL 144

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG------EVEFC---------VEMY 180
                AK+M++ M      L +  +N LI  +CKS       E++ C         V  Y
Sbjct: 145 KDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY 204

Query: 181 Y-----------SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           Y            + + GLCA+  TY ILI +  + G +D A   L  + +   +     
Sbjct: 205 YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYP 264

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I G  + G    A  +F EM  KG  P    YT LI+     G + +A     EMT
Sbjct: 265 YNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMT 324

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             G++P +  F  +  GL  C  + +AE I L 
Sbjct: 325 AKGISPNTYTFTAIISGL--CRANMMAEAIRLF 355



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 1/178 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K GL+D A  +  +    +     + Y   L  L        A  L   M
Sbjct: 544 TYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM 603

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGF+    +Y IL+  +C  GK+ EA + L  M+D    P       ++        L
Sbjct: 604 L-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNL 662

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A ++ + M+ +G   D   ++ L+   C +GE+E   E+   + + G+ ++  T K
Sbjct: 663 QEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVTPK 720


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 142/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K    M   N   + +T ++II    + G    A+ +F + T  +CQ  V  Y  L+ +L
Sbjct: 295 KLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSL 354

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           CE   F  A  ++  M+ KG +P   TY  L++ +C  G    A E L  M     +P  
Sbjct: 355 CEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNA 414

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R  + L+ G      +  A  +++KM+++    ++ T+N LI   CK G++    ++   
Sbjct: 415 RTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSL 474

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  D  TY + I  + K G+++EA  L  +L E G K    +Y+ +I G  + G+
Sbjct: 475 MNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGK 534

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             D      +M   G  PN   Y  LI    +   F EA   +  M +  + P +  + +
Sbjct: 535 VSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTI 594

Query: 303 VTDGLKNCGKHDLAEKI 319
           + D L    + D A  +
Sbjct: 595 LIDNLLKDDEFDQAHDM 611



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 2/305 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F +   VD A+++F++    NC   V  Y  ++FALC++     A  + + M  K 
Sbjct: 280 LIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKH 339

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY +L+ + C      +A++ L  M +KG  P V   + L+ G    G   SA 
Sbjct: 340 CQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASAL 399

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++++ M       +  T+N LI   C+   +   + + + + +  L  +V TY ILI   
Sbjct: 400 EILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQ 459

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +  A++LL  + E G  P    Y+  I  + +RG  ++A   F  +K KG   N 
Sbjct: 460 CKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANE 519

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            +Y+ LI    + G+  +    L +M   G  P S  ++ + DG   C + +  E   L+
Sbjct: 520 VIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGY--CKEKNFKEARLLV 577

Query: 323 EVSLR 327
           ++ ++
Sbjct: 578 DIMIK 582



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 132/305 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+  N S + +T + +I  F +   +  A+ + +K      Q  V+ YN L+   C+
Sbjct: 402 LSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCK 461

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 AY L+  M   G VPD+ TY++ ++  C  G + EA+   + + +KG       
Sbjct: 462 EGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVI 521

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+ G    G +   + +++KM+  G V +  T+NSLI+  CK    +    +   + 
Sbjct: 522 YSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMI 581

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K  +     TY ILI  + K    D+A  +   ++  G  P   +Y   I      G+  
Sbjct: 582 KRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLK 641

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     +M  KG  P+  +YT+ I   GR G    A   L  M E+G  P    +  + 
Sbjct: 642 DAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLI 701

Query: 305 DGLKN 309
             L N
Sbjct: 702 KHLSN 706



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 136/302 (45%), Gaps = 4/302 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS+   T + +I  + ++  VD A  +F       C +  + Y +L+   CE +    A 
Sbjct: 235 LSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEAL 294

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L  +M      P  RTY +++ A C  G+  EA    +EM++K   P V    +L+  L
Sbjct: 295 KLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSL 354

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                 + AK+++N M+++G +  + T+N+LI+  CK G     +E+   +       + 
Sbjct: 355 CEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNA 414

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI    +   I +A  LLH ++E   +P    Y  +I G  + G    A+   S 
Sbjct: 415 RTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSL 474

Query: 253 MKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNC 310
           M   G  P+   Y++ I T+C RG   VE A  L E + E G+      +  + DG    
Sbjct: 475 MNESGLVPDEWTYSVFIDTLCKRG--LVEEARSLFESLKEKGIKANEVIYSTLIDGYCKV 532

Query: 311 GK 312
           GK
Sbjct: 533 GK 534



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 129/326 (39%), Gaps = 35/326 (10%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K + LM    L     T S+ I+   K GLV+ A  +F        +   ++Y++L+  
Sbjct: 469 YKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDG 528

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V        L+ +M+  G VP+  TY  L++ +C     +EA+  +  M  +   P 
Sbjct: 529 YCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPA 588

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+  LL     + A  M ++M+  G   D+  + + I   C  G ++   +   
Sbjct: 589 ADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLK---DAEV 645

Query: 182 SVCKL---GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM- 237
            +CK+   G+  D   Y + I A  + G ID AF +L  + E G +P    Y+ +IK + 
Sbjct: 646 LICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLS 705

Query: 238 ----------------------------FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
                                       +RR  ++     F +M   G  PN   Y   I
Sbjct: 706 NAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFI 765

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTP 295
           T   + G    A      M E G +P
Sbjct: 766 TGLCKVGCLEVAHRLFDHMKEKGQSP 791



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 29/343 (8%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K   +  +    S +I+ + K G V +   + +K  +  C    + YNSL+   C+ 
Sbjct: 508 ESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKE 567

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K F  A  L+  MI++   P   TY IL++      +  +A +   +M   G +P V   
Sbjct: 568 KNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIY 627

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
              +    + G L+ A+ ++ KM  +G + D   +   I+   + G ++    +   + +
Sbjct: 628 TAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHE 687

Query: 186 LGLCADVSTYKILIPAVSKA----------------GMIDEAFR-------------LLH 216
           +G      TY  LI  +S A                G+    F              L  
Sbjct: 688 VGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFG 747

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            + E G  P  + Y   I G+ + G  + A   F  MK KG  PN  +Y  L+    + G
Sbjct: 748 KMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLG 807

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + EA  +L  M E    P      L+  GL + G  + A+++
Sbjct: 808 LYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRV 850



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 119/295 (40%), Gaps = 2/295 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   TL+ ++  + K G V  A    +K            Y SL+   C  K    A 
Sbjct: 200 VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAAN 259

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A+   M  KG + ++ +Y  L++ +C + ++ EA +   +M +    P VR   +++  L
Sbjct: 260 AIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFAL 319

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  M  +M ++    ++ T+  LI ++C+    +   ++   + + GL   V
Sbjct: 320 CQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSV 379

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI    K G+   A  +L  +  +   P    Y  +I G  R      A     +
Sbjct: 380 VTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHK 439

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  +   PN   Y +LI    + G    A   L  M E GL P    + +  D L
Sbjct: 440 MLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 110/252 (43%), Gaps = 2/252 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++ RR+    F    R Y +L+        + E +    EM D    P +   + +V G 
Sbjct: 155 SMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGY 214

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +  A+  V+K+++ G  LD  T+ SLI   C++  V+    ++ S+   G   + 
Sbjct: 215 CKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNE 274

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            +Y  LI    +A  +DEA +L   + ED   P    Y  II  + + G+  +A   F E
Sbjct: 275 VSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKE 334

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   PN   YT+LI        F +A   L  M E GL P    ++ + DG   C K
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGY--CKK 392

Query: 313 HDLAEKIELLEV 324
              A  +E+L +
Sbjct: 393 GLSASALEILSL 404



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 71/174 (40%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
            +++F K     C      Y   +  LC+V     A+ L   M  KG  P++  Y  L+ 
Sbjct: 742 TLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLG 801

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G   EA  +L  M +    P +    LL+ GL + G  E AK++    ++  +  
Sbjct: 802 CSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNY 861

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           D   +  LI+ + K G  + C +++  +   G      TY +LI        ID
Sbjct: 862 DEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGFDGIQEID 915



 Score = 48.1 bits (113), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 95/253 (37%), Gaps = 31/253 (12%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL------------- 59
           + P T+  +L I+ +G+ G +D A  +  +     C+     Y+ L+             
Sbjct: 655 IMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSS 714

Query: 60  ---------------FALCEVKL-FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103
                          F+ C  ++ +     L  +M   G  P+  TY   +   C  G +
Sbjct: 715 SSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCL 774

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
             A      M +KG +P     + L+      G    A + ++ MI+   +  L++   L
Sbjct: 775 EVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLL 834

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +  +   G  E    ++ S  +     D   +K+LI  + K G+ D+   L   +   G 
Sbjct: 835 LCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGC 894

Query: 224 KPFPSLYAPIIKG 236
           +  P  Y+ +I+G
Sbjct: 895 QIHPKTYSMLIEG 907


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 135/302 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T +++I      G    A+ +FN+     C+  V  Y  L+  LC+      A  ++  
Sbjct: 300 RTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSE 359

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG +P   TY  L++ +C  G + +A E L  M      P  R  + L+ GL     
Sbjct: 360 MSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A  ++NKM+++     L T+NSLI   CK  ++E    +   + + GL  D  TY +
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            I  + K G ++EA  L  ++   G K    +Y  +I G  + G+ D A+     M    
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y +LI    +  +  EA++ + +M  MG+ P    + ++   +   G  D A 
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 318 KI 319
           K+
Sbjct: 600 KV 601



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 137/294 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++LM+  +   + +T + +I    K   V  A+ + NK         ++ YNSL+  
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V     AY L+  M   G VPD+ TY++ ++  C  G++ EA      +  KG    
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G    G ++ A  ++ +M+    + +  T+N LIE +CK  +++    +  
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +  +G+   V TY ILI  + K G  D A ++ +++V  G++P    Y   +   F +G
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQG 628

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             ++     ++M  +G  P+   YT+LI    R G    A ++L  M + G  P
Sbjct: 629 MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKP 682



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 135/309 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L  S  T + +I+ + K G++D+A E+ +   + +C      YN L+  L
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +  H A AL+ +M+ +   P   TY  L++  C    +  A   L  M++ G  P  
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               + +  L   G +E A  + + +  +G   +   + +LI+  CK G+++    +   
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       +  TY +LI  + K   + EA  L+  ++  G KP    Y  +I  M + G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           FD A   F+ M   G+ P+   YT  +      G   E  + + +M E G+ P    + +
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 303 VTDGLKNCG 311
           + DG    G
Sbjct: 655 LIDGYARLG 663



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 130/278 (46%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T +++I+   K   +D A ++ ++ +       V+ YN+L+   C+  +   A+ ++  
Sbjct: 335 HTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDL 394

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M      P+ RTY  L+   C   K+ +A   L +M ++  +P +   + L+ G      
Sbjct: 395 MESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVND 454

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LESA ++++ M + G V D  T++  I+T+CK G VE    ++ SV   G+ A+   Y  
Sbjct: 455 LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTA 514

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G ID A+ LL  ++ D   P    Y  +I+G+ +  +  +A    ++M   G
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMG 574

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P    YT+LI    + G F  A      M  +G  P
Sbjct: 575 VKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 144/333 (43%), Gaps = 29/333 (8%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM    L     T S+ I+   K G V+ A  +F+   A   +   ++Y +L+  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V     AY+L+ RM+    +P+  TY +L+   C   KM+EA   + +M   G  P 
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+  +L  G  + A ++ N M+  G+  D+ T+ + +      G +E   ++  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM---- 237
            + + G+  D+ TY +LI   ++ G+   AF  L  +V+ G KP   + + +IK +    
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 238 -------------------------FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                                    ++  +++ A   F +M   G   +  +Y  LI   
Sbjct: 699 RMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGF 758

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            +  R  EA   +  M E G++P    ++ + D
Sbjct: 759 CQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 791



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP   T + ++  + K G V  A    +K            Y SL+   C  K   
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            AY +   M +KG   ++ +Y  L++  C +G++ EA +   +M++    P VR   +L+
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L  +G    A  + N+M ++G   ++ T+  LI+ +CK  +++   +M   + + GL 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLI 366

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY  LI    K GMID+AF +L  +  +   P    Y  +I G+ ++ +   A   
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            ++M  +   P+   Y  LI    +      A   L  M E GL P    + +  D L  
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 310 CGK 312
            G+
Sbjct: 487 EGR 489



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 37  VEVFNKCTA---FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           +EVF K  A   F  +  +  YN++L +L +  L      +   ++     P+  T+  +
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAM 200

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           VN +C  G + EA+ +  ++   G +P       L+ G      +++A ++   M ++G 
Sbjct: 201 VNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGC 260

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +  ++ +LI  +C++G +   ++++  + +   C  V TY +LI A+S +G   EA  
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALN 320

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L + + E G +P    Y  +I G+ +  + D+A    SEM  KG  P+   Y  LI    
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           + G   +A   L  M      P +R ++ +  GL  C K  + + + LL
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGL--CKKRKVHKAMALL 427



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 128/326 (39%), Gaps = 29/326 (8%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ + K G +D A  +  +     C      YN L+  LC+ K    A +L+ +M+  G
Sbjct: 515 LIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMG 574

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P   TY IL+      G    A +    M   G+ P V      +    + G LE   
Sbjct: 575 VKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVD 634

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ KM ++G + DL T+  LI+   + G      +    +   G    +    ILI  +
Sbjct: 635 DVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNL 694

Query: 203 SKAGMIDE-----------------------------AFRLLHNLVEDGHKPFPSLYAPI 233
           S    + E                             A +L   +VE G     S+Y  +
Sbjct: 695 SHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGAL 754

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  ++ + ++A      MK +G  P+  +Y  L+  C + G + EA   +  M E GL
Sbjct: 755 IAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 814

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P+   + L+  GL   G ++ A+ +
Sbjct: 815 LPLLESYKLLVCGLYIEGSNEKAKAV 840



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 139/313 (44%), Gaps = 22/313 (7%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I E  K G  D+A++VFN   +   Q  V  Y + L A     +      +I +M
Sbjct: 581 TYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKM 640

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G +PD  TY +L++ +   G    A +FL+ M D G  P +    +L++ L +   +
Sbjct: 641 NEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRM 700

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSL-IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  +  +        +  +   NS+ I  + K+ E E  ++++  + + G   DVS Y  
Sbjct: 701 KETRSEIG-------IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGA 753

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +   ++EA  L+H++ E G  P   +Y  ++    + G + +A      M   G
Sbjct: 754 LIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENG 813

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT-----DGLKNCGK 312
             P    Y +L+      G ++E +N   +    GL      +D V      DGL    K
Sbjct: 814 LLPLLESYKLLVC-----GLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL---K 865

Query: 313 HDLAEKI-ELLEV 324
            DL ++  EL+++
Sbjct: 866 RDLVDECSELIDI 878



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 123/302 (40%), Gaps = 2/302 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    K  L+D    V+ +         +  +N+++   C++     A     ++++ G
Sbjct: 165 ILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG 224

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+   C +  +  A E    M  KG          L+ GL  AG +  A 
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEAL 284

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   M +      + T+  LI  +  SG     + ++  + + G   +V TY +LI  +
Sbjct: 285 KLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +DEA ++L  + E G  P    Y  +I G  + G  DDAF     M+     PN 
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y  LI    +  +  +A   L +M E  L+P    ++ +  G   C  +DL     LL
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG--QCKVNDLESAYRLL 462

Query: 323 EV 324
            +
Sbjct: 463 SL 464



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 31/168 (18%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL------- 53
           +WKT+E    Y +++       + E+  +HG   + V ++    A  CQQ  L       
Sbjct: 723 VWKTLE----YEIALK------LFEKMVEHGCTID-VSIYGALIAGFCQQERLEEAQGLV 771

Query: 54  -------------LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS 100
                        +YNSLL   C++ ++  A  L+  M+  G +P   +Y +LV      
Sbjct: 772 HHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIE 831

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           G   +A+     +   G+N       +L+ GLL    ++   ++++ M
Sbjct: 832 GSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIM 879


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 139/319 (43%), Gaps = 3/319 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS +I   G   ++  A+ +F +  A  CQ     YNS++
Sbjct: 142 MWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMI 201

Query: 60  FALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A   L EM + G 
Sbjct: 202 IMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGM 261

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +++        +  A  +  +M       D+ T+  LI  + K+G ++    
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            Y+ + + G   D      +I  + KAG +D+  +L   +      P    Y  IIK +F
Sbjct: 322 FYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF 381

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             + +  + F +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 382 ESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP 441

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  + D L    ++DLA
Sbjct: 442 AAYCSLIDALGKAKRYDLA 460



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 10/303 (3%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYA 73
           P T+ +  +I   GK G +D+ +++F +    +C   V+ YN+++ AL E K      ++
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFS 392

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
              RM   G  P   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L 
Sbjct: 393 WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            A   + A ++  ++ +         +  +I+ + K+G ++  + ++  + KLG   +V 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y  L+  +++A M+DEA   +  + E G  P  + Y  I+ G+ + G    A    + M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
           K     P+   Y  +++     G F EAA  + EM  +G       +DL+T    L+  G
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFE-----YDLITYSSILEAIG 627

Query: 312 KHD 314
           K D
Sbjct: 628 KVD 630



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 1/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G  D+A+ + N+      Q    +Y  ++    ++   HGA +L   M
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD  TY  L+     +G++ EA  F  EM  +G  P     + ++  L  AG L
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRL 351

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +   ++  +M     + ++ T+N++I+ + +S   V      +  +   G+     TY I
Sbjct: 352 DDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSI 411

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   I++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 412 LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC 471

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +  VY ++I   G+ GR  +A N   EM+++G TP    ++ +  GL
Sbjct: 472 GSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 1/305 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  + +  ++II  F K   V  A+ +F +     C+  V  Y  L+  L +   
Sbjct: 256 MKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGR 315

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY     M R+G  PD      ++N    +G++ +  +  +EM      P V   + 
Sbjct: 316 IDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNT 375

Query: 128 LVQGLLNA-GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +   +        +M   G      T++ LI+  CK+  +E  + +   + + 
Sbjct: 376 IIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEK 435

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI A+ KA   D A  L   L E+       +YA +IK + + G+ DDA
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 495

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F EM   G  PN   Y  L++   R     EA   + +M E G  P    ++++ +G
Sbjct: 496 INLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNG 555

Query: 307 LKNCG 311
           L   G
Sbjct: 556 LAKTG 560



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+  GK G +D+A+ +F++ +   C   V  YN+L+  L    +   A  
Sbjct: 473 SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALT 532

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M   G +PD  +Y I++N    +G    A E L  M +    P     + ++  L 
Sbjct: 533 TMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALS 592

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 593 HAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S SP T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 ERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A     EMS  G  P V   
Sbjct: 455 KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A  L+ A   + KM + G + D+ ++N ++  + K+G     +EM  ++  
Sbjct: 515 NALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKN 574

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             +  D  +Y  ++ A+S AGM +EA  L+  +   G +     Y+ I++ + +  Q
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 128/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G +D A   +++     C+   ++ N+++  L +         L   M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P+  TY  ++ A + S  ++ E   + + M   G +P      +L+ G      
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNR 421

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 422 IEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  L   + + G  P    Y  ++ G+ R    D+A     +M+  G
Sbjct: 482 MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHG 541

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M    + P +  ++ V   L + G  + A 
Sbjct: 542 CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601

Query: 318 KI 319
           ++
Sbjct: 602 EL 603


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 138/312 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N   + +T +++I      G    A+ +FN+     C+  V  Y  L+  LC+   
Sbjct: 290 MTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK 349

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M  KG +P   TY  L++ +C  G + +A E L  M      P  R  + 
Sbjct: 350 MDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNE 409

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL     +  A  ++NKM+++     L T+NSLI   CK  ++E    +   + + G
Sbjct: 410 LICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D  TY + I  + K G ++EA  L  ++   G K    +Y  +I G  + G+ D A+
Sbjct: 470 LVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAY 529

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M      PN   Y +LI    +  +  EA++ + +M  MG+ P    + ++   +
Sbjct: 530 SLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM 589

Query: 308 KNCGKHDLAEKI 319
              G  D A K+
Sbjct: 590 LKDGAFDHALKV 601



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 137/294 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++LM+  +   + +T + +I    K   V  A+ + NK         ++ YNSL+  
Sbjct: 389 FEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V     AY L+  M   G VPD+ TY++ ++  C  G++ EA      +  KG    
Sbjct: 449 QCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKAN 508

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G    G ++ A  ++ +M+    + +  T+N LIE +CK  +++    +  
Sbjct: 509 EVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVA 568

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +  +G+   V TY ILI  + K G  D A ++ +++V  G++P    Y   +   F +G
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQG 628

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             ++     ++M  +G  P+   YT+LI    R G    A ++L  M + G  P
Sbjct: 629 MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKP 682



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 135/309 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L  S  T + +I+ + K G++D+A E+ +   + +C      YN L+  L
Sbjct: 355 KMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGL 414

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +  H A AL+ +M+ +   P   TY  L++  C    +  A   L  M++ G  P  
Sbjct: 415 CKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               + +  L   G +E A  + + +  +G   +   + +LI+  CK G+++    +   
Sbjct: 475 WTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLER 534

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       +  TY +LI  + K   + EA  L+  ++  G KP    Y  +I  M + G 
Sbjct: 535 MLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGA 594

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           FD A   F+ M   G+ P+   YT  +      G   E  + + +M E G+ P    + +
Sbjct: 595 FDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 303 VTDGLKNCG 311
           + DG    G
Sbjct: 655 LIDGYARLG 663



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 133/288 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK      +  T +++I+   K   +D A ++ ++ +       V+ YN+L+   C+  +
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ ++  M      P+ RTY  L+   C   K+ +A   L +M ++  +P +   + 
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G      LESA ++++ M + G V D  T++  I+T+CK G VE    ++ SV   G
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + A+   Y  LI    K G ID A+ LL  ++ D   P    Y  +I+G+ +  +  +A 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              ++M   G  P    YT+LI    + G F  A      M  +G  P
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQP 612



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 154/371 (41%), Gaps = 53/371 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM    L     T S+ I+   K G V+ A  +F+   A   +   ++Y +L+  
Sbjct: 459 YRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDG 518

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+V     AY+L+ RM+    +P+  TY +L+   C   KM+EA   + +M   G  P 
Sbjct: 519 YCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPT 578

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +L+  +L  G  + A ++ N M+  G+  D+ T+ + +      G +E   ++  
Sbjct: 579 VVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIA 638

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK------ 235
            + + G+  D+ TY +LI   ++ G+   AF  L  +V+ G KP   + + +IK      
Sbjct: 639 KMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHEN 698

Query: 236 -----------------------------------------------GMFRRGQFDDAFC 248
                                                          G  ++ + ++A  
Sbjct: 699 RMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQG 758

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               MK +G  P+  +Y  L+  C + G + EA   +  M E GL P+   + L+  GL 
Sbjct: 759 LVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLY 818

Query: 309 NCGKHDLAEKI 319
             G ++ A+ +
Sbjct: 819 IEGSNEKAKAV 829



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  +SP   T + ++  + K G V  A    +K            Y SL+   C  K   
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            AY +   M +KG   ++ +Y  L++  C +G++ EA +   +M++    P VR   +L+
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L  +G    A  + N+M ++G   ++ T+  LI+ +CK  +++   +M   + + GL 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLI 366

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY  LI    K GMID+AF +L  +  +   P    Y  +I G+ ++ +   A   
Sbjct: 367 PSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMAL 426

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            ++M  +   P+   Y  LI    +      A   L  M E GL P    + +  D L  
Sbjct: 427 LNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCK 486

Query: 310 CGK 312
            G+
Sbjct: 487 EGR 489



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 5/289 (1%)

Query: 37  VEVFNKCTA---FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           +EVF K  A   F  +  +  YN++L +L +  L      +   ++     P+  T+  +
Sbjct: 141 LEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAM 200

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           VN +C  G + EA+ +  ++   G +P       L+ G      +++A ++   M ++G 
Sbjct: 201 VNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGC 260

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +  ++ +LI  +C++G +   ++++  + +   C  V TY +LI A+S +G   EA  
Sbjct: 261 QRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALN 320

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L + + E G +P    Y  +I G+ +  + D+A    SEM  KG  P+   Y  LI    
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           + G   +A   L  M      P +R ++ +  GL  C K  + + + LL
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGL--CKKRKVHKAMALL 427



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 123/302 (40%), Gaps = 2/302 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           I+    K  L+D    V+ +         +  +N+++   C++     A     ++++ G
Sbjct: 165 ILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAG 224

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+   C +  +  A E    M  KG          L+ GL  AG +  A 
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEAL 284

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   M +      + T+  LI  +  SG     + ++  + + G   +V TY +LI  +
Sbjct: 285 KLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGL 344

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +DEA ++L  + E G  P    Y  +I G  + G  DDAF     M+     PN 
Sbjct: 345 CKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNT 404

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y  LI    +  +  +A   L +M E  L+P    ++ +  G   C  +DL     LL
Sbjct: 405 RTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG--QCKVNDLESAYRLL 462

Query: 323 EV 324
            +
Sbjct: 463 SL 464



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 130/316 (41%), Gaps = 55/316 (17%)

Query: 9   KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K   + V P   T +++I E  K G  D+A++VFN   +   Q  V  Y + L A     
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQG 628

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           +      +I +M  +G +PD  TY +L++ +   G    A +FL+ M D G  P +    
Sbjct: 629 MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVS 688

Query: 127 LLVQ------------------------------------------------GLLNAGY- 137
           +L++                                                G L AG+ 
Sbjct: 689 ILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFC 748

Query: 138 ----LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               LE A+ +V+ M ++G     + +NSL++  CK G     V +  ++ + GL   + 
Sbjct: 749 QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLE 808

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +YK+L+  +   G  ++A  + H L+  G+      +  +I G+ +R   D+       M
Sbjct: 809 SYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIM 868

Query: 254 KIKGHPPNRPVYTMLI 269
           + KG  PN   Y++LI
Sbjct: 869 EEKGCQPNPLTYSLLI 884



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L  +M+  G   D   Y  L+  +C   ++ EAQ  +  M ++G +P     + L+ 
Sbjct: 721 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 780

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                G    A ++V+ M++ G +  LE++  L+  +   G  E    +++ +   G   
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 840

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           D   +K+LI  + K  ++DE   L+  + E G +P P  Y+ +I+G+ R
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLER 889



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+++F K     C   V +Y +L+   C+ +    A  L+  M  +G  P +  Y  L++
Sbjct: 721 ALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLD 780

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G   EA   +  M + G  P +    LLV GL   G  E AK + + ++  G+  
Sbjct: 781 CCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNY 840

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           D   +  LI+ + K   V+ C E+   + + G   +  TY +LI  + + 
Sbjct: 841 DEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGLERT 890


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 141/292 (48%), Gaps = 4/292 (1%)

Query: 5   IELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +++M     + SP  +  S +I  F   G    A  +F++ T    +  V+ YN ++ AL
Sbjct: 251 LQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDAL 310

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +    A  ++R+M   G  PD  TY+ +++ + + G+++EA +  +EM  +G  P +
Sbjct: 311 CKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNI 370

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +  +  L   G  + A +  + M  +G   D+ ++ +L+      G     + ++ S
Sbjct: 371 VTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNS 430

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+ A+   + ILI A +K GM+D+A  +   + + G  P    Y+ +I    R G+
Sbjct: 431 MKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGR 490

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGL 293
             DA   F++M  +G  PN  VY+ +I   C  GG  V+A   + EM   G+
Sbjct: 491 LTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGG-LVKAKELVSEMINKGI 541



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 135/292 (46%), Gaps = 3/292 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  +   G   + + +FN   +        ++  L+ A  +  +   A  +   M ++G
Sbjct: 411 LLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQG 470

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ +++ +   G++ +A E   +M  +G  P       ++QG    G L  AK
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530

Query: 143 QMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           ++V++MI +G    D+  F+S+I ++CK G V    +++     +G    V T+  LI  
Sbjct: 531 ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               G +D+AF++L  +   G +P    Y  ++ G F+ G+ +D    F EM+ KG  PN
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL--KNCG 311
              Y +++    R GR V A     EM E G T     + ++  GL   NC 
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 2/276 (0%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ Y++++           A +L   M R+G  PD  TY ++++A C +  M +A+
Sbjct: 261 CSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAE 320

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L++M+  G  P       ++ G    G L+ A +M  +M K+G + ++ T NS + ++
Sbjct: 321 LVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASL 380

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G  +   E + S+   G   D+ +Y  L+   +  G   +   L +++  +G     
Sbjct: 381 CKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANC 440

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            ++  +I    +RG  DDA   F+EM+ +G  P+   Y+ +I+   R GR  +A     +
Sbjct: 441 HVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQ 500

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M   G+ P +  +  +  G   C    L +  EL+ 
Sbjct: 501 MVARGIQPNTAVYSSIIQGF--CMHGGLVKAKELVS 534



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 138/308 (44%), Gaps = 2/308 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +LII+   K   +D A  V  + T    Q   + Y+ ++     +     A  + R M
Sbjct: 302 TYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREM 361

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G +P+  T    + + C  G+ +EA EF   M+ KG  P +     L+ G  + G  
Sbjct: 362 KKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCF 421

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + N M   G   +   F  LI    K G V+  + ++  + + G+  DV TY  +
Sbjct: 422 ADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTV 481

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   S+ G + +A    + +V  G +P  ++Y+ II+G    G    A    SEM  KG 
Sbjct: 482 ISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGI 541

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           P P+   ++ +I    + GR ++A +     T++G  P    F+ + DG    GK D A 
Sbjct: 542 PRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAF 601

Query: 318 KI-ELLEV 324
           KI + +EV
Sbjct: 602 KILDAMEV 609



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 144/315 (45%), Gaps = 4/315 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S +I  F + G + +A+E FN+  A   Q    +Y+S++   C       A 
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK 530

Query: 73  ALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            L+  MI KG   PD   ++ ++N+ C  G++ +A +     +D G  P V   + L+ G
Sbjct: 531 ELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDG 590

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A ++++ M   G   D+ T+N+L++   K+G +   + ++  + + G+  +
Sbjct: 591 YCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPN 650

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY I++  + +AG    A +  H ++E G     S+Y  I+ G+ R    D+A   F 
Sbjct: 651 TVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQ 710

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNC 310
           ++       +  +   +I    +  R  EA      ++  GL P    +  ++ + LK+ 
Sbjct: 711 KLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDG 770

Query: 311 GKHDLAEKIELLEVS 325
           G  D       +E S
Sbjct: 771 GVEDANNMFSSMEKS 785



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 130/290 (44%), Gaps = 4/290 (1%)

Query: 33  VDNAVEVF-NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PDKRT 89
            + AV V  ++ +   C    + Y+ +L ALC+  +   A  L++ M ++G    PD   
Sbjct: 208 TEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVA 267

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y+ +++ + + G+  +A     EM+ +G  P V   +L++  L  A  ++ A+ ++ +M 
Sbjct: 268 YSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMT 327

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G   D  T++ +I      G ++   +M+  + K GL  ++ T    + ++ K G   
Sbjct: 328 TDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSK 387

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA     ++   GHKP    Y  ++ G    G F D    F+ MK  G   N  V+T+LI
Sbjct: 388 EAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILI 447

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEK 318
               + G   +A     EM + G++P    +  V       G+  D  EK
Sbjct: 448 HAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEK 497



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 121/266 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I    K G V +A ++F+  T    +  V+ +NSL+   C V     A+ ++  M 
Sbjct: 549 FSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAME 608

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY  L++ +  +G++ +     +EM  KG  P      +++ GL  AG   
Sbjct: 609 VVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTV 668

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +A++  ++MI+ G  + +  +  ++  +C++   +  + ++  +  + +   ++    +I
Sbjct: 669 AARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMI 728

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K    +EA  L   +   G  P  S Y  +I  + + G  +DA   FS M+  G  
Sbjct: 729 NAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIV 788

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYL 285
           P   +   +I M    G   +A NYL
Sbjct: 789 PGSRLLNRIIRMLLEKGEIAKAGNYL 814



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 117/262 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +   G +D A ++ +       +  ++ YN+LL    +    +    L R M
Sbjct: 583 TFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREM 642

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY I++     +G+   A++   EM + G    V    +++ GL      
Sbjct: 643 QRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  K+        +   N++I  + K    E   E++ ++   GL  + STY ++
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A  +  ++ + G  P   L   II+ +  +G+   A  + S++  K  
Sbjct: 763 IINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRI 822

Query: 259 PPNRPVYTMLITMCGRGGRFVE 280
                  ++++++  R G++ E
Sbjct: 823 LLEASTTSLMLSLFSRKGKYQE 844



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 3/162 (1%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR-LLHN 217
           T+N L++  C++   +  + ++  + + GL  D  T   L+  +  A   +EA   LLH 
Sbjct: 159 TYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHR 218

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PNRPVYTMLITMCGRG 275
           + E G  P    Y+ ++K +        A      M  +G    P+   Y+ +I      
Sbjct: 219 MSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNE 278

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           G   +A +   EMT  G+ P    ++L+ D L      D AE
Sbjct: 279 GETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAE 320


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 129/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K  +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+   G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 2/238 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 71  DJYVFSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   ++  G +P    Y+ +I G  +  + DDA   F EM +KG  PN   +
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXF 250

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 306



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 111/301 (36%), Gaps = 37/301 (12%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G                                   +  DV TY +LI
Sbjct: 195 EGFRLKSAMLASG-----------------------------------VQPDVYTYSVLI 219

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K    D+A  L   ++  G  P    +  +I G  + G+ D A   + +M  +   
Sbjct: 220 NGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    + G   +A + + EM+  GL P    +  + DG   C + DL    
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGC--CKEGDLDXAF 337

Query: 320 E 320
           E
Sbjct: 338 E 338


>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
          Length = 838

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 126/270 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I E    G +D A E+FN+      +     YNSLL+ +C  K    A  L+R M    
Sbjct: 478 LILELCNSGKLDEAYEIFNQMKDLGLKPSEFTYNSLLYGICRRKDTSAAADLLREMRANA 537

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P  +    +V   C SG++ EA +FL  M + GF P +      + G+   G +E+A 
Sbjct: 538 HKPWIKNCTDMVQQLCLSGRITEALQFLDGMLELGFLPDIVTYSAAMNGMCKVGDIENAL 597

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   +  + ++ D+   N LI    K+G+ +   E+   +   G+   V TY ++I   
Sbjct: 598 GLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGMLPSVVTYNLMIDIW 657

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K+G ID+A   ++ ++++   P    Y  ++ G+   G+ D+A   + +M+ KG  PN 
Sbjct: 658 CKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKMREKGCSPNG 717

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             YT L+    + GR   A NY  EM   G
Sbjct: 718 IAYTALVNGLCKCGRMETAVNYYEEMKTKG 747



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 127/284 (44%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +        C+  +L++N L+  LC       AY +  +M   G  P + TY  
Sbjct: 453 LDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIFNQMKDLGLKPSEFTYNS 512

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+   C       A + L+EM      P ++    +VQ L  +G +  A Q ++ M++ G
Sbjct: 513 LLYGICRRKDTSAAADLLREMRANAHKPWIKNCTDMVQQLCLSGRITEALQFLDGMLELG 572

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F+ D+ T+++ +  +CK G++E  + ++  +       DV  + ILI    KAG  DEA 
Sbjct: 573 FLPDIVTYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQ 632

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            ++  ++  G  P    Y  +I    + G  D A     +M  +  PP    YT L+   
Sbjct: 633 EIMEEMLSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGL 692

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              GR  EA     +M E G +P    +  + +GL  CG+ + A
Sbjct: 693 CNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETA 736



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 142/325 (43%), Gaps = 22/325 (6%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  ++  + +TLS+++    + G VD A+ +F K  ++     + +Y+ L+  LC    
Sbjct: 268 MEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNE 327

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--PVRGR 125
              A  L   M R    PD R    ++ A+C  G       F+ E +     P   V   
Sbjct: 328 MGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFINENAVH-LKPGSAVLLY 386

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQG-------------FVL------DLETFNSLIET 166
           ++++ GL+N G +E+A Q+++ M++               FV+      + ++FN ++  
Sbjct: 387 NVILDGLINHGEVEAAYQLLSSMVRGDQRVSDDDTVGVHIFVITEDVKPNSDSFNIVVCG 446

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK  +++  + +   +  LG    +  +  LI  +  +G +DEA+ + + + + G KP 
Sbjct: 447 LCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSGKLDEAYEIFNQMKDLGLKPS 506

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  ++ G+ RR     A     EM+   H P     T ++      GR  EA  +L 
Sbjct: 507 EFTYNSLLYGICRRKDTSAAADLLREMRANAHKPWIKNCTDMVQQLCLSGRITEALQFLD 566

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCG 311
            M E+G  P    +    +G+   G
Sbjct: 567 GMLELGFLPDIVTYSAAMNGMCKVG 591



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 111/279 (39%), Gaps = 40/279 (14%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFAL---------- 62
           S++P  L  ++   G  GL D A  VF+   T  +C      YN LL AL          
Sbjct: 132 SMTPGALGFLLRRLGAAGLPDTAARVFDAAKTTLSCAPNSYTYNCLLDALAKAGRAEDAE 191

Query: 63  ---------------------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
                                      C       A A+++RM ++ +V D+    +L+ 
Sbjct: 192 ARLQEMVVTCGDESVDRYTLTSLLQCYCNAGRPEDASAVLQRMSKRAWV-DEHVLTMLIV 250

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A+   GK+ +A E L  M      P  +   +LV GL   G ++ A  M  KM   GF +
Sbjct: 251 AYSKWGKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQGRVDVAMNMFGKMASYGFSV 310

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL  ++ LIE +C   E+   V+++  + +  +  DV   K +I A  + G        +
Sbjct: 311 DLAMYSVLIEGLCHGNEMGKAVKLFEDMKRDRITPDVRLLKKIIEAFCRQGDFSTVGPFI 370

Query: 216 H-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           + N V         LY  I+ G+   G+ + A+   S M
Sbjct: 371 NENAVHLKPGSAVLLYNVILDGLINHGEVEAAYQLLSSM 409



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 83/174 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S  +    K G ++NA+ +F   ++      V+ +N L+    +   F  A  ++  M
Sbjct: 579 TYSAAMNGMCKVGDIENALGLFLDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEM 638

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG +P   TY ++++ WC SG + +A   + +M D+   P V     L+ GL NAG  
Sbjct: 639 LSKGMLPSVVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRP 698

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           + A  +  KM ++G   +   + +L+  +CK G +E  V  Y  +   G   D+
Sbjct: 699 DEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGFDLDI 752



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 16/134 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I+ + K G +D A+    K         V+ Y SLL  LC       A  L  +M
Sbjct: 649 TYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIVLWCKM 708

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+   Y  LVN  C  G+M  A  + +EM  KGF       DL +  LLN    
Sbjct: 709 REKGCSPNGIAYTALVNGLCKCGRMETAVNYYEEMKTKGF-------DLDIFSLLN---- 757

Query: 139 ESAKQMVNKMIKQG 152
                + N +I QG
Sbjct: 758 -----LTNLLIAQG 766


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 137/307 (44%), Gaps = 2/307 (0%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P  +S   +I  F + G +D+A E   +   F      ++Y  ++   C   L   A 
Sbjct: 295 VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEAL 354

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+  G +PD  TY  L+N  C   ++ +A+E L EM ++G  P +     L+ G 
Sbjct: 355 RVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGY 414

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E A Q  + +  Q    D+ T+N+LI+ +C+ G++    E++  +    +  + 
Sbjct: 415 CRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNH 474

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY ILI +  + G +D AF  L  +V  G  P    Y  IIKG  R G       F  +
Sbjct: 475 VTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPK 534

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+     P+   Y  LI    + G+  EA N L  M    + P +  ++++  G    G 
Sbjct: 535 MRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGN 594

Query: 313 HDLAEKI 319
              A+ +
Sbjct: 595 MQEADWV 601



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 133/288 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + L       +++I  F + GL+  A+ V ++  AF C   V+ YN+LL  LC+ + 
Sbjct: 325 MREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERR 384

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M  +G  PD  T+  L++ +C  G + +A +F   +SD+   P +   + 
Sbjct: 385 LSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNT 444

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G+   G L  A ++ + M  +    +  T++ LI++ C+ G+V+        +   G
Sbjct: 445 LIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKG 504

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  ++ TY  +I    ++G + +  + L  +  D   P    Y  +I G  + G+  +AF
Sbjct: 505 IVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAF 564

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
                M+ +   P+   Y M+I+     G   EA     +M   G+ P
Sbjct: 565 NLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEP 612



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 145/315 (46%), Gaps = 8/315 (2%)

Query: 12  NLSVSPQTLSLIIEEFGKH---GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           N  V+  TL++++  + K    G VD  +    K   F     V+ +N ++ A       
Sbjct: 154 NSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVF---PDVVTHNVMVDARFRAGDV 210

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A ALI  M+ KG  P   TY  ++     +G+  +A+E  + M   G  P VR  ++L
Sbjct: 211 EAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNML 270

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G   AG LE A +   +M  +    D+ +F+ LI    + GE++   E    + + GL
Sbjct: 271 IGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGL 330

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D   Y ++I    +AG++ EA R+   +V  G  P    Y  ++ G+ +  +  DA  
Sbjct: 331 MPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEE 390

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EMK +G PP+   +T LI    R G   +A  +   +++  L P    ++ + DG+ 
Sbjct: 391 LLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGM- 449

Query: 309 NCGKHDLAEKIELLE 323
            C + DL +  EL +
Sbjct: 450 -CRQGDLGKANELWD 463



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   ++G  D A EVF    A      V  +N L+   C       A    + M
Sbjct: 231 TYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEM 290

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  +++ L+  +   G+M  A E+L+EM + G  P      +++ G   AG +
Sbjct: 291 RGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLM 350

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ ++M+  G + D+ T+N+L+  +CK   +    E+   + + G+  D+ T+  L
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G I++A +    + +   +P    Y  +I GM R+G    A   + +M  +  
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREI 470

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN   Y++LI      G+   A  +L EM   G+ P    ++ +  G    G 
Sbjct: 471 FPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGN 524



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 6/225 (2%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++  ++     P  + + +L+  +  S K REA E  + + D     P    + L+  L 
Sbjct: 76  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALS 135

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS---GEVEFCVEMYYSVCKLGLCA 190
            AG+          ++     ++  T N ++ + CK+   GEV+  +      C   +  
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRC---VFP 192

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV T+ +++ A  +AG ++ A  L+ ++V  G KP    Y  ++KG+ R G++D A   F
Sbjct: 193 DVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVF 252

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             M   G  P+   + MLI    R G   EA  +  EM    +TP
Sbjct: 253 RAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTP 297



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 94/207 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   + G +  A E+++   +       + Y+ L+ + CE      A+A +  M
Sbjct: 441 TYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEM 500

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG VP+  TY  ++  +C SG + + Q+FL +M      P +   + L+ G +  G +
Sbjct: 501 VNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKM 560

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++  M  +    D  T+N +I      G ++    +Y  +   G+  D  TY  +
Sbjct: 561 HEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSM 620

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           I     AG   ++F+L   +++ G  P
Sbjct: 621 INGHVVAGNSKKSFQLHDEMLQKGLAP 647



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 76/173 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   + G VDNA    ++         ++ YNS++   C           + +M
Sbjct: 476 TYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKM 535

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                +PD  TY  L++ +   GKM EA   L+ M ++   P     ++++ G    G +
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           + A  +  KM  +G   D  T+ S+I     +G  +   +++  + + GL  D
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF++ T +  +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM   G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSID 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +   +M++QGF  DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ A      ++++  +     Y  +I G+ R GQ  DA     EM   G  
Sbjct: 319 DGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G     +  L EM   G  P
Sbjct: 379 PDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 120/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     +  A ++  +MI  G V +  TF +LI+  CK+G +
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSI 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E Y  + + G   D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 258 DLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + A  +   M  +    +   YT LI+   R G+ V+A   L EM  +GL
Sbjct: 318 IDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+    +LL+
Sbjct: 378 KPDNGTYTMIINEF--CKKGDVKTGSKLLK 405



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 116/250 (46%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+    + 
Sbjct: 165 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMND 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI  G VP+  T+  L++  C +G +  A E  +EM  +GF+P +   + L+ 
Sbjct: 225 ANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E  +     + K  +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G         
Sbjct: 345 DDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLL 404

Query: 251 SEMKIKGHPP 260
            EM+  GH P
Sbjct: 405 KEMQRDGHVP 414



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG + +A E  +   +  F  P      +++  +   Y +      
Sbjct: 65  DVYVFSGLITAYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK GE+     ++  + K GL   V ++  L+    + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    Y+ +I G+ +  + +DA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + G    A     EM   G +P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A+    +    N +   + Y +L+  LC 
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCR 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  PD  TY +++N +C  G ++   + L+EM   G  P V
Sbjct: 359 EGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCV 416


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 127/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++ +F K G +  A  VFN  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 139 FNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM DKG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +C+ G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G++ DA     EM   G  
Sbjct: 319 DGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G     +  L EM   G  P
Sbjct: 379 PDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMP 414



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + + G + +A  L+  +   G KP    Y  +
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +   YT LI+   + GR+++A   L EM  +GL
Sbjct: 318 IDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+    +LL+
Sbjct: 378 KPDTITYTMIINEF--CKKGDVWTGSKLLK 405



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 114/251 (45%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + + G +D    +     A   Q  V  Y+ L+  LC+      
Sbjct: 165 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDD 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   + L+ 
Sbjct: 225 ANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + +  +  
Sbjct: 285 GLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G         
Sbjct: 345 DDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLL 404

Query: 251 SEMKIKGHPPN 261
            EM+  G  P+
Sbjct: 405 KEMQRDGQMPS 415



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 107 VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWG 166

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++   M   G   D+ T++ LI  +CK  +++   
Sbjct: 167 LRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDAN 226

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 227 ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R+G    A     EM +KG  P++  YT LI    + G    A  +   M +  +    
Sbjct: 287 CRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDD 346

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G++  AEK+  E+L V L+
Sbjct: 347 VGYTALISGLCQEGRYLDAEKVLREMLSVGLK 378



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 134/294 (45%), Gaps = 21/294 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FV----------PDKRTYAILVNA 96
           Y +++  LC  ++   A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 16  YCTMIHLLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITA 75

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +  F  P      +++ L+   Y +       ++++ G+   
Sbjct: 76  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 135

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V ++  L+    + G +DE FRL  
Sbjct: 136 LYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKT 195

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G +P    Y+ +I G+ +  + DDA   F EM  KG  PN   +T LI    + G
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNG 255

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           R   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+S++ +
Sbjct: 256 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CRKGDLKQARDLIDEMSMKGL 307



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N Q   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
              +  A  ++R M+  G  PD  TY +++N +C  G +    + L+EM   G  P V
Sbjct: 359 EGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSV 416


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 3/319 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS ++   G   +V  A+ +F +     CQ     YNS++
Sbjct: 142 MWKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMI 201

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A + L EM + G 
Sbjct: 202 IMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGM 261

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +L+        +  A  +  +M  Q    D+ T+  LI  + K+G ++    
Sbjct: 262 QPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            +Y + + G   D      +I  + KAG +D+A +L   +      P    Y  IIK +F
Sbjct: 322 FFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALF 381

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             + +  +   +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 382 ESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP 441

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  + D L    ++DLA
Sbjct: 442 AAYCSLIDALGKAKRYDLA 460



 Score =  117 bits (293), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 10/303 (3%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-A 73
           P T+ +  +I   GK G +D+A+++F +     C   V+ YN+++ AL E K       +
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPS 392

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
              RM   G  P   TY+IL++ +C + +M +A   L+EM +KGF P       L+  L 
Sbjct: 393 WFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            A   + A ++  ++ +         +  +I+ + K+G ++  + M+  + KLG   DV 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVY 512

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y  L+  +++ GM+DEA   +  + E G  P  + Y  I+ G+ + G    A    S M
Sbjct: 513 AYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 572

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
           K     P+   Y  ++      G F EAA  + EM  +G       +DL+T    L+  G
Sbjct: 573 KQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFE-----YDLITYSSILEAIG 627

Query: 312 KHD 314
           K D
Sbjct: 628 KVD 630



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+  GK G +D+A+ +F++     C   V  YN+L+  L    +   A +
Sbjct: 473 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 532

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +RRM   G +PD  +Y I++N    +G    A E L  M      P V   + ++  L 
Sbjct: 533 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALS 592

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 593 HAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGK 628



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 128/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G +D A   F +     C+   ++ N+++  L +      A  L + M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEM 361

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P   TY  ++ A + S  +  E   + + M + G +P      +L+ G      
Sbjct: 362 GTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 421

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 422 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  +   + + G  P    Y  ++ G+ R G  D+A      M+  G
Sbjct: 482 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 541

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M +  + P    ++ V   L + G  + A 
Sbjct: 542 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAA 601

Query: 318 KI 319
           K+
Sbjct: 602 KL 603



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 3/242 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S S  T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A     EM+  G  P V   
Sbjct: 455 KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A   + +M + G + D+ ++N ++  + K+G     +EM  ++ +
Sbjct: 515 NALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 574

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV +Y  ++ A+S AGM +EA +L+  +   G +     Y+ I++ +   G+ D 
Sbjct: 575 STVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAI---GKVDH 631

Query: 246 AF 247
            +
Sbjct: 632 EY 633



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 108/245 (44%), Gaps = 8/245 (3%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--PVRGRDL--LVQGLLNA 135
           R+ +  D  TY  L+       +  E  + +QEM     NP   V   +L  +V+ L NA
Sbjct: 116 RRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSEVVRMLGNA 172

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVST 194
             +  A  +  ++  +      + +NS+I  +   G+     E+Y  +   G C  D  T
Sbjct: 173 KMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMT 232

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI A  K G  D A +LL+ + E+G +P   +Y  +I   F+      A   F EM+
Sbjct: 233 YSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMR 292

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +   P+   YT LI   G+ GR  EA ++  EM   G  P +   + + + L   G+ D
Sbjct: 293 HQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLD 352

Query: 315 LAEKI 319
            A K+
Sbjct: 353 DAMKL 357


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 145/349 (41%), Gaps = 35/349 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E+M+   +  +  T +++++     G +     V ++  A N    V LY +++ A C 
Sbjct: 190 LEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCR 249

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------- 117
                 A  +    +  G  P++RTY +L+N +C  G+M  A+  L +M  +G       
Sbjct: 250 AGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQII 309

Query: 118 FNPPVRG----------------------------RDLLVQGLLNAGYLESAKQMVNKMI 149
           FN  + G                             + L  GL     +  AK +++ MI
Sbjct: 310 FNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMI 369

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++G   +  T+ +LI   CK G++     ++  +   G    V TY +++    K G I 
Sbjct: 370 EKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIR 429

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA R    + + G  P    YA ++ G    G+ D A   F EMK +G  PN   YT LI
Sbjct: 430 EAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALI 489

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           +   + GR  EA     +M + GLTP    +  +   L    + D+  K
Sbjct: 490 SGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDIHHK 538



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 146/341 (42%), Gaps = 35/341 (10%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE--------- 64
           SVSP   S++++ F K G VD+A  + ++      +   L YNSLL              
Sbjct: 129 SVSPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQE 188

Query: 65  ---------VKLFHGAY-----------------ALIRRMIRKGFVPDKRTYAILVNAWC 98
                    ++   G Y                 A++  M  K    D   Y  ++NA+C
Sbjct: 189 LLEIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYC 248

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            +G +R A E   E    G  P  R   +L+ G    G +E+A+ ++  M  +G   +  
Sbjct: 249 RAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQI 308

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            FN++I+  C+ G V+  +++  ++ K+G+  DV TY  L   + +   + EA  LLH +
Sbjct: 309 IFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIM 368

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G  P    Y  +I    + G   +A   F EM  KG  P+   Y +++    + G  
Sbjct: 369 IEKGVPPNYVTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSI 428

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EA  +  EM + GL P    +  +  G    GK D+A K+
Sbjct: 429 REAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKL 469



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           ++V G   +G ++ A+ ++++M + G  L+   +NSL++   +  +     E+   +   
Sbjct: 137 VVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENG 196

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+ A V TY IL+ ++S AG I +   ++  +          LY  +I    R G    A
Sbjct: 197 GIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRA 256

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F E    G  PN   Y +LI    + G+   A   L +M   G+      F+ + DG
Sbjct: 257 SEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDG 316

Query: 307 LKNCGKHDLAEKIE 320
               G  D A K++
Sbjct: 317 YCRQGMVDNALKVK 330


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++   M+ Q  + DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF+    +++   +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L +++ F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 XGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVGLK 384



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + + M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI+    LD   + +LI  +C+ G      +M   +  +GL  D+ TY ++
Sbjct: 334 DTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  +GH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 120/253 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+ A     +   A  +   M   G  PD  TY  ++ A C  GKM +A E   +M 
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           D+G  P     + L+QG    G L  AK+++++++  G  LD+  F+S+I  +CK G V 
Sbjct: 460 DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVM 519

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++     +GL  D   Y +L+      G +++A R+   +V  G +P    Y  ++
Sbjct: 520 DAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLV 579

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ D+    F EM  +G  P+  +Y+++I      GR V A     EMTE G+ 
Sbjct: 580 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIA 639

Query: 295 PISRCFDLVTDGL 307
                +++V  GL
Sbjct: 640 MDICTYNIVLRGL 652



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 151/313 (48%), Gaps = 2/313 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +         ++ YNS++ ALC+ +    A A
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ K  +P+  TY  L+  + S+G+ +EA    +EM      P V    +L+  L 
Sbjct: 279 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 338

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++N ++      G +    +++  +   G+  D  
Sbjct: 339 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 398

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 399 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 458

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P++  Y  LI      G  ++A   + E+   G+      F  + + L   G+ 
Sbjct: 459 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 518

Query: 314 DLAEKIELLEVSL 326
             A+ I  L V++
Sbjct: 519 MDAQNIFDLTVNV 531



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 141/307 (45%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    +LM    ++    T +++I+ +   G++D A+ +FN+      +  V+ Y +++ 
Sbjct: 381 MTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIA 440

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC +     A     +MI +G  PDK  Y  L+  +C+ G + +A+E + E+ + G + 
Sbjct: 441 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHL 500

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     ++  L   G +  A+ + +  +  G   D   +N L++  C  G++E  + ++
Sbjct: 501 DIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF 560

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++   G+  +V  Y  L+    K G IDE   L   +++ G KP   LY+ II G+F  
Sbjct: 561 DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEA 620

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+   A   F EM   G   +   Y +++    +   F EA     E+  M +       
Sbjct: 621 GRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 680

Query: 301 DLVTDGL 307
           + + DG+
Sbjct: 681 NTMIDGM 687



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 139/295 (47%), Gaps = 3/295 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 199 GKSGQADDLLRMMAEGGAV-CSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 257

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY  +V+A C +  M +A+ FL++M +K   P     + L+ G  + G  + A ++  +
Sbjct: 258 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 317

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +   + D+ T + L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 377

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 378 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 437

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +I    R G+  +A     +M + G+ P    ++ +  G   C    L +  EL+
Sbjct: 438 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGF--CTHGSLLKAKELI 490



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 107 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTD 166

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V   +
Sbjct: 167 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYN 226

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   DL T+NS++  +CK+  ++        +   
Sbjct: 227 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK 286

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            +  +  TY  LI   S  G   EA R+   +      P     + ++  + + G+  +A
Sbjct: 287 RVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEA 346

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   Y +++      G  V+  +    M   G+ P    F+++   
Sbjct: 347 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 406

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 407 YANCGMLDKA 416



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 117/271 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G V +A  +F+           ++YN L+   C V     A  +   M+
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMV 564

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  +G  P      +++ GL  AG   
Sbjct: 565 SAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTV 624

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  +D+ T+N ++  + K+   +  + ++  +  + +  ++ T   +I
Sbjct: 625 PAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMI 684

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + +   ++EA  L  ++      P    Y+ +I  + + G  ++A   FS M+  G  
Sbjct: 685 DGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 744

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           PN  +   ++    +    V A  YL ++ E
Sbjct: 745 PNSRLLNHVVRELLKKNEIVRAGAYLSKIDE 775



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 122/281 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F  HG +  A E+ ++         ++ ++S++  LC++     A  +    +  G
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD   Y +L++ +C  GKM +A      M   G  P V G   LV G    G ++   
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 592

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M+++G       ++ +I+ + ++G        ++ + + G+  D+ TY I++  +
Sbjct: 593 SLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGL 652

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   L     K        +I GMF+  + ++A   F+ +      P+ 
Sbjct: 653 FKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSV 712

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             Y+++IT   + G   EA +    M   G  P SR  + V
Sbjct: 713 VTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHV 753



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/276 (18%), Positives = 131/276 (47%), Gaps = 2/276 (0%)

Query: 12  NLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N+ + P  +  +++++ +   G ++ A+ VF+   +   +  V+ Y +L+   C++    
Sbjct: 530 NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRID 589

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              +L R M+++G  P    Y+I+++    +G+   A+    EM++ G    +   ++++
Sbjct: 590 EGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVL 649

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL      + A  +  ++      +++ T N++I+ + ++  VE   +++ S+ +  L 
Sbjct: 650 RGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLV 709

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             V TY I+I  + K G+++EA  +  ++   G +P   L   +++ + ++ +   A  +
Sbjct: 710 PSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAY 769

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            S++  +          +L+ +    G   E   +L
Sbjct: 770 LSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 805


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 142/306 (46%), Gaps = 4/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS++I  F     VD    VF K      +  V+++ +L+  +C +     A  L++ M
Sbjct: 77  TLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEM 136

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VPD  T   L+  +CS GK+ + ++    M  KG  P V    + + G      +
Sbjct: 137 GLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKI 196

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++M  +G V +  T+N+LI+ +C++        ++  +C  GL  D+  Y  L
Sbjct: 197 DEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTL 256

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +DE   L   +     KP   +Y  II GM R  +  DA    S + ++G 
Sbjct: 257 LDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGL 316

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH-DLAE 317
            P+   YT L+    R G  +EA     +M E G  P S  ++++   L+ C +H D + 
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVL---LQGCLQHNDTST 373

Query: 318 KIELLE 323
            ++L+ 
Sbjct: 374 VVQLIH 379



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 125/283 (44%), Gaps = 2/283 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +I+   + G  + A  +  +     C   V+  NSL+   C          +   M+
Sbjct: 113 FTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMV 172

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG  PD  +Y+I +N +C   K+ EA E   EMS +G  P     + L++ L  A    
Sbjct: 173 SKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPR 232

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A+ +  KM   G   D+  +++L++  CK G ++  + ++  + +  +  D+  Y I+I
Sbjct: 233 DAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIII 292

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + ++  + +A  +L  L+ +G KP    Y  ++ G+ R G   +A   F +M+  G  
Sbjct: 293 NGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCM 352

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL--TPISRCF 300
           P    Y +L+  C +          + EM + G     ++R F
Sbjct: 353 PGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTF 395



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 142/331 (42%), Gaps = 37/331 (11%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM--------- 78
           G  G +D+A+  FN+    N Q  ++ +N LL ++  +K +    +L + M         
Sbjct: 16  GYFGNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNV 75

Query: 79  --------------------------IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
                                     +++GF PD   +  L++  C  GK   A   L+E
Sbjct: 76  CTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKE 135

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M   G  P V   + L++G  + G ++  +++ + M+ +G   D+ +++  I   CK  +
Sbjct: 136 MGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEK 195

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  +E++  +   G+  +  TY  LI A+ +A    +A  L   +   G  P    Y+ 
Sbjct: 196 IDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G  ++G  D+    F EM+ +   P+  VYT++I    R  +  +A   L  +   G
Sbjct: 256 LLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG 315

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           L P    +  + DGL  C +  + E + L  
Sbjct: 316 LKPDVHTYTALVDGL--CREGSIIEALRLFR 344



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 109/250 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  +   G +D   ++F+   +   +  V  Y+  +   C+V+    A  L   M
Sbjct: 147 TCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEM 206

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G VP+  TY  L+ A C + + R+AQ   ++M   G +P +     L+ G    G L
Sbjct: 207 SHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNL 266

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    +  +M ++    DL  +  +I  +C+S +V+   E+   +   GL  DV TY  L
Sbjct: 267 DEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTAL 326

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + + G I EA RL   + EDG  P    Y  +++G  +            EM  +G 
Sbjct: 327 VDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGF 386

Query: 259 PPNRPVYTML 268
             +    T L
Sbjct: 387 YADAVTRTFL 396



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 105/220 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   LM    L     + S+ I  + K   +D A+E+F++ +        + YN+L+ AL
Sbjct: 166 KIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKAL 225

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L R+M   G  PD   Y+ L++ +C  G + E     QEM  +   P +
Sbjct: 226 CQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDL 285

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +++ G+  +  ++ AK++++++I +G   D+ T+ +L++ +C+ G +   + ++  
Sbjct: 286 VVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRK 345

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           + + G      +Y +L+    +        +L+H + + G
Sbjct: 346 MEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRG 385



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            +SP  L  S +++ F K G +D  + +F +      +  +++Y  ++  +C  +    A
Sbjct: 245 GLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDA 304

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++ R+I +G  PD  TY  LV+  C  G + EA    ++M + G  P     ++L+QG
Sbjct: 305 KEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQG 364

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLET 159
            L      +  Q++++M  +GF  D  T
Sbjct: 365 CLQHNDTSTVVQLIHEMADRGFYADAVT 392



 Score = 46.2 bits (108), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 3/195 (1%)

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A    N+M+ +     +  FN L+ ++ +  + E  V ++  +   G+  +V T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI        +D  F +    ++ G KP   ++  +I G+ R G+ + A     EM +
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+      L+      G+  +       M   GL P    + +  +G   C    +
Sbjct: 139 VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGY--CKVEKI 196

Query: 316 AEKIELL-EVSLRSV 329
            E +EL  E+S R V
Sbjct: 197 DEAMELFDEMSHRGV 211


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 2/295 (0%)

Query: 14  SVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P  +S   +I  + K G +D    + ++      +  V  Y++L+ ALC+     GA
Sbjct: 270 SLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGA 329

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M ++G +P+   +  L++    +G++   +E  Q+M  KG  P +   + LV G
Sbjct: 330 HGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L +A+ +V+ MI++G   D  T+ +LI+  C+ G+VE  +E+   + + G+  D
Sbjct: 390 FCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELD 449

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              +  L+  + K G + +A R L  ++  G KP    Y  ++    ++G     F    
Sbjct: 450 RVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLK 509

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           EM+  GH P+   Y +L+    + G+   A   L  M  +G+ P    ++ + +G
Sbjct: 510 EMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEG 564



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +I    ++G +D   E + K  +   Q  ++LYN+L+   C+      A  ++  MI
Sbjct: 348 FTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMI 407

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           R+G  PDK TY  L++ +C  G +  A E  +EM   G      G   LV G+   G + 
Sbjct: 408 RRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVI 467

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A++ + +M++ G   D  T+  +++  CK G+ +   ++   +   G    V TY +L+
Sbjct: 468 DAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLL 527

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             + K G +  A  LL  ++  G  P    Y  +++G  R   
Sbjct: 528 NGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHAN 570



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 114/272 (41%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V ++N L+   C+      A  +   + ++   P   ++  L+N +C  G + E      
Sbjct: 240 VYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKH 299

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M      P V     L+  L     ++ A  + ++M K+G + +   F +LI    ++G
Sbjct: 300 QMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNG 359

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           E++   E Y  +   GL  D+  Y  L+    K G +  A  ++  ++  G +P    Y 
Sbjct: 360 EIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYT 419

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  R G  + A     EM   G   +R  ++ L+    + GR ++A   L EM   
Sbjct: 420 TLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA 479

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+ P    + ++ D    C K D     +LL+
Sbjct: 480 GIKPDDVTYTMMMDAF--CKKGDAQTGFKLLK 509



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           ++  GF  +   + IL+N +C  G + +AQ+   E++ +   P V   + L+ G    G 
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+   ++ ++M K     D+ T+++LI  +CK  +++    ++  +CK GL  +   +  
Sbjct: 291 LDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI   S+ G ID        ++  G +P   LY  ++ G  + G    A      M  +G
Sbjct: 351 LIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             P++  YT LI    RGG    A     EM + G+
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F + G V+ A+E+  +      +   + +++L+  +C+      A   +R M
Sbjct: 417 TYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREM 476

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD  TY ++++A+C  G  +   + L+EM   G  P V   ++L+ GL   G +
Sbjct: 477 LRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  +++ M+  G V D  T+N+L+E   +        + Y    ++G+ AD+++YK +
Sbjct: 537 KNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSS---KRYIQKPEIGIVADLASYKSI 593

Query: 199 IPAVSKA 205
           +  + +A
Sbjct: 594 VNELDRA 600



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 2/213 (0%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F  E+ D GF   V   ++L+      G +  A+++ +++ K+     + +FN+LI   C
Sbjct: 227 FYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYC 286

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G ++    + + + K     DV TY  LI A+ K   +D A  L   + + G  P   
Sbjct: 287 KVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDV 346

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           ++  +I G  R G+ D     + +M  KG  P+  +Y  L+    + G  V A N +  M
Sbjct: 347 IFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              GL P    +  + DG   C   D+   +E+
Sbjct: 407 IRRGLRPDKITYTTLIDGF--CRGGDVETALEI 437


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  118 bits (296), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 124/237 (52%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + ++    + +I+ + + G+VD+A+++         +  +  YN+L   LC V  
Sbjct: 134 MQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNR 193

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  MI  G VP+  TY  L++  C  G M EA+   +EM++KG  P V   ++
Sbjct: 194 LDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNV 253

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ G    G +  A++   +M K+GFV D+ T+ SL+   C +G+V+  ++++  + + G
Sbjct: 254 MIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRG 313

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +V  Y  LI  ++K G  + AF+L  ++++ G  P  SLY+ ++  +    + D
Sbjct: 314 TEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 370



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 145/361 (40%), Gaps = 59/361 (16%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF------------A 61
           SVSP   S++++   K G VD+A  + +           L YNSLL              
Sbjct: 11  SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 70

Query: 62  LCEVKLFHGAYA------------LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           + E+    G  A            ++   +  G  P++RTY +L+N +C  G+M  A+  
Sbjct: 71  ILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEML 130

Query: 110 LQEMSDKG-------FNPPVRGR----------------------------DLLVQGLLN 134
           L +M  +G       FN  + G                             + L  GL  
Sbjct: 131 LADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCR 190

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
              L+ AK +++ MI+ G V +  T+ +LI   CK G++     ++  + + G    V T
Sbjct: 191 VNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVT 250

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y ++I   +K G I EA R    + + G  P    YA ++ G    G+ D A   F EMK
Sbjct: 251 YNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMK 310

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            +G  PN   YT LI+   + GR   A     +M + GL P    +  +   L    + D
Sbjct: 311 QRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 370

Query: 315 L 315
           +
Sbjct: 371 V 371


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 134/281 (47%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+     T +++++   K G +  A  V            ++ YNSL+     VK  + A
Sbjct: 269 NIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKA 328

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M R+G  PD ++Y+I++N  C +  + EA    +EM  K   P     + L+ G
Sbjct: 329 TFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDG 388

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           LL  G +  A  +VN+M  +G   D+ T++SL++ +CK+ +V+  + +   +   G+  +
Sbjct: 389 LLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPN 448

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY IL+  + K G + +A  +  +L+  G+     +Y  ++ G+ + G FD+A    S
Sbjct: 449 IYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVS 508

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +M+  G  P+   Y  L+       +  +A   L EM   G
Sbjct: 509 KMEDNGCIPDAVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 138/289 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +  AV +FN+    N +  V  +N L+  LC+      A  ++  MI++G   +  TY
Sbjct: 253 GRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTY 312

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +    +  +A      M+ +G  P V+   +++ GL     ++ A  +  +M  
Sbjct: 313 NSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHS 372

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    +  T+NSLI+ + K G +    ++   +   G  ADV TY  L+ A+ K   +D+
Sbjct: 373 KSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDK 432

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  + + G +P    Y  ++ G+ + G+  DA   + ++ IKG+  +  +Y +++ 
Sbjct: 433 AITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVN 492

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + G F EA + + +M + G  P +  ++ +   L    K+D A K+
Sbjct: 493 GLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKL 541



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 1/275 (0%)

Query: 33  VDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           VD+AV  FN      N  Q +  +N +L +L ++  FH A +  ++M  K   PD  T+ 
Sbjct: 44  VDDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFN 103

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +C  G +  A   L ++   GF+P       L++GL   G +  A    + +I +
Sbjct: 104 ILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAK 163

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           GF LD  ++ +LI  +CK+GE    +++   +  L +  +V  Y  +I ++ K  ++  A
Sbjct: 164 GFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHA 223

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   ++     P    Y  +I G    G+  +A   F++M +K   P+   + +L+  
Sbjct: 224 SDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDG 283

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + G   +A N L  M + G+      ++ + DG
Sbjct: 284 LCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDG 318



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 149/350 (42%), Gaps = 37/350 (10%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L   P T+++  +I+    +G V  A+   +   A       + Y +L+  LC+
Sbjct: 122 LAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCK 181

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R++      P+   Y  ++++ C    +  A +   EM  K   P V  
Sbjct: 182 TGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVT 241

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE---------- 174
              L+ G L  G L+ A  + N+M+ +    D+ TFN L++ +CK GE++          
Sbjct: 242 YTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMI 301

Query: 175 ------------------FCVE-------MYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                             F V+       ++ ++ + G+  DV +Y I+I  + K  M+D
Sbjct: 302 KQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVD 361

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  L   +      P    Y  +I G+ + G+  DA+   +EM  +G P +   Y+ L+
Sbjct: 362 EAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL 421

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               +  +  +A   + ++ + G+ P    + ++ DGL   G+   A+ +
Sbjct: 422 DALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAV 471



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 65/151 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +  M          T S +++   K+  VD A+ +  K      Q  +  Y  L+  
Sbjct: 399 WDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDG 458

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A A+ + ++ KG+  D + Y ++VN  C  G   EA   + +M D G  P 
Sbjct: 459 LCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPD 518

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
               + LV+ L      + A +++ +MI QG
Sbjct: 519 AVTYETLVRALFENDKNDKAVKLLREMIVQG 549



 Score = 38.5 bits (88), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 61/148 (41%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           FN ++ ++ K       +     +    +  D+ T+ ILI      G ++ AF +L  + 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G  P       +IKG+   G+  +A  F  ++  KG   ++  Y  LI    + G   
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGL 307
            A   L ++  + + P    ++ + D L
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTIIDSL 214


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 129/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            +++   F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M 
Sbjct: 145 FNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMH 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM  A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G++    ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 120/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D   ++ +   A      V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 SKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L  A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A +++  ++  G KP    Y  II  + ++G    
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQXDGHAPSVVTYNVLM 429



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +AVE +                 +L  L ++K F   +      +
Sbjct: 75  FSGLITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL + +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 195 EGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G  + A     EM +KG  
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 MREMLSVGLK 384



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G + +A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I  V K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 131/294 (44%), Gaps = 21/294 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FVP----------DKRTYAILVNA 96
           Y +++  +C  ++F  A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 22  YCTMIHFVCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAILETKGNQRSDIYVFSGLITA 81

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +  F  P      +++ L+   Y +       + ++ G+   
Sbjct: 82  YLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGYPAS 141

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L    CK G++     ++ ++ K GL   V +Y  L+    + G +DE F+L  
Sbjct: 142 LYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKS 201

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G  P    Y+ +I G+ +  + D A   F EM +KG  PN   +T LI    + G
Sbjct: 202 AMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNG 261

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           R   A     +M    L P    ++ +  GL  C K DL +  +L+ E+S++ +
Sbjct: 262 RVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGDLNQAHDLIDEMSMKGL 313



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D A E   +    N +   + Y +L+  LC+
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQ 364

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  PD  TY +++N  C  G + +  + L+EM   G  P V  
Sbjct: 365 EGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVT 424

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 425 YNVLMNG 431


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 122/265 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+ A C+       + L   M+R+G  PD  TY +L++  C+ GK+ EA     E  
Sbjct: 480 YNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECK 539

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P      +++ G   A  +E  +++  +M+      +   + +LI   C++G + 
Sbjct: 540 KNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMR 599

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +   G+    +TY  LI  +S  G++D A +LL  + ++G  P    Y  +I
Sbjct: 600 EAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + GQ         EM I    PN+  YT++I    + G    AA  L EM + G+ 
Sbjct: 660 GGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIV 719

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
           P +  ++ +T+G    GK + A K+
Sbjct: 720 PDAVTYNALTNGFCKEGKMEEALKV 744



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 124/265 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + S++  LC    F  A   I  M+ + F P+     +LV+  C +GK  EA E    + 
Sbjct: 375 FTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLL 434

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +KGF       + L+ GL  AG  E A +++ +M+++G VLD  ++N+LI   CK G+VE
Sbjct: 435 EKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVE 494

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++   + + G+  D+ TY +L+  +   G I+EA  L H   ++G+ P    Y  +I
Sbjct: 495 EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMI 554

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  +  + ++    F EM       N  VY  LI      G   EA     +M   G+ 
Sbjct: 555 DGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIP 614

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             S  +  +  GL N G  D A ++
Sbjct: 615 QTSATYSSLIHGLSNIGLVDSANQL 639



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 137/315 (43%), Gaps = 4/315 (1%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P     S ++  F   G VD+A+E+F K         V+ YN+++  LC+      A+
Sbjct: 193 VTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAF 252

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
               +M ++   P   TY +L+N      +  EA   L+EMSD+G+ P     + L+ G 
Sbjct: 253 QFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGY 312

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G + +A Q+ + MI  G   +  T NSLI+  CKS ++E    +   +   G   + 
Sbjct: 313 CRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQ 372

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  +I  +      D A   +  ++    KP   L   ++ G+ + G+  +A   +  
Sbjct: 373 GTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYR 432

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +  KG   N      LI      G   EAA  L EM E GL   S  ++ +   L  C +
Sbjct: 433 LLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLI--LACCKE 490

Query: 313 HDLAEKIELLEVSLR 327
             + E  +L E  +R
Sbjct: 491 GKVEEGFKLKEEMVR 505



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 124/269 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ + + G +  A+++ +   +       +  NSL+   C+      A  L+  M+  G
Sbjct: 308 LIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGG 367

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            V ++ T+  +++  C   +   A  F+ EM  + F P      LLV GL   G    A 
Sbjct: 368 GVINQGTFTSVIHRLCLKCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAI 427

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++  +++++GF  +  T N+LI  +C++G  E   ++   + + GL  D  +Y  LI A 
Sbjct: 428 ELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILAC 487

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++E F+L   +V  G +P    Y  ++ G+   G+ ++A   + E K  G+ P+ 
Sbjct: 488 CKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDA 547

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             Y ++I    +  R  E      EM  M
Sbjct: 548 YTYGIMIDGYCKANRVEEGEKLFQEMVTM 576



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 105/216 (48%), Gaps = 2/216 (0%)

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E    +++KG  P ++  + L+  L+ A  ++ + Q+ + M   G   D+  F++++   
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAF 207

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C  G V+  +E++  + K+G+  +V TY  +I  + K G +DEAF+    + ++  KP  
Sbjct: 208 CTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSL 267

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I G+ +  +FD+A C   EM  +G+ PN  VY  LI    R G    A     +
Sbjct: 268 VTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDD 327

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           M   G++P S   + +  G   C  + +     LLE
Sbjct: 328 MISNGISPNSVTCNSLIQGY--CKSNQMEHAEHLLE 361



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 132/315 (41%), Gaps = 41/315 (13%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           + C  L +SL+ A  EVK+   +Y +   M   G  PD   ++ +VNA+C+ G++ +A E
Sbjct: 163 KTCNFLLSSLVKA-NEVKM---SYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIE 218

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----------------- 151
             ++M   G  P V   + ++ GL   G L+ A Q   KM K+                 
Sbjct: 219 LFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLV 278

Query: 152 ------------------GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                             G+  +   +N+LI+  C+ G +   +++   +   G+  +  
Sbjct: 279 KLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSV 338

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T   LI    K+  ++ A  LL  ++  G       +  +I  +  + +FD A  F  EM
Sbjct: 339 TCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEM 398

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            ++   PN  + T+L++   + G+  EA      + E G    +   + +  GL   G  
Sbjct: 399 LLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSK 458

Query: 314 DLAEKI--ELLEVSL 326
           + A K+  E+LE  L
Sbjct: 459 EEAAKLLKEMLERGL 473



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 88/182 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  + ++G +  A  + +   +    Q    Y+SL+  L  + L   A  L+  M ++G
Sbjct: 588 LIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG 647

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+   Y  L+  +C  G+M +    LQEMS    +P      +++ G    G +++A 
Sbjct: 648 LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAA 707

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++N+M ++G V D  T+N+L    CK G++E  +++   +   G+  D  TY  LI   
Sbjct: 708 KLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767

Query: 203 SK 204
            K
Sbjct: 768 HK 769



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +  +  T S +I      GLVD+A ++ ++         V+ Y +L+   C++  
Sbjct: 608 MRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQ 667

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            H   ++++ M      P+K TY I++N  C  G M+ A + L EM+ KG  P     + 
Sbjct: 668 MHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNA 727

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           L  G    G +E A ++ + M   G  LD  T+ +LI+
Sbjct: 728 LTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLID 765



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 93/221 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I+ + K   V+   ++F +      +Q  ++Y +L+ A CE      A+ L   M
Sbjct: 549 TYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDM 608

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G      TY+ L++   + G +  A + L EM  +G +P V     L+ G    G +
Sbjct: 609 RSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQM 668

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                ++ +M       +  T+  +I   CK G ++   ++   + + G+  D  TY  L
Sbjct: 669 HKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNAL 728

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
                K G ++EA ++   +   G       Y  +I G  +
Sbjct: 729 TNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 51/115 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   LS +    + +I  + K G +     +  + +  N     + Y  ++   C+
Sbjct: 640 LDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCK 699

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           +     A  L+  M +KG VPD  TY  L N +C  GKM EA +    MS  G +
Sbjct: 700 LGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGIS 754


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 16/283 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++    T +++I+ F K GL++ A  +F +  +  C   V+ Y +L+ A  + K 
Sbjct: 483 MKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 542

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------SDKGFNPP 121
              A  +  RM+  G  P+  TY  LV+  C +G + +A E   ++      +D  F  P
Sbjct: 543 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 602

Query: 122 VRGRDLL----------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              R  L          V GL  A  ++ A ++++ M+  G   +   +++LI+  CK+G
Sbjct: 603 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAG 662

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E++  + K G    V TY  LI  + K G +D A ++L  +++D   P    Y 
Sbjct: 663 KIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYT 722

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
            +I G+ R G+ + A    S M+ KG  PN   YT LI   G+
Sbjct: 723 AMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQ 765



 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 140/311 (45%), Gaps = 16/311 (5%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           E+     L+D A +++ +  A NC    +   +    LC V  F  A+ LI+ M+RKGFV
Sbjct: 395 EKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFV 454

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           PD  TY+ ++   C + K+ +A    QEM   G  P V    +L+     AG +E A+ +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M   G    + T+ +LI    K+ +V    ++++ +   G   +  TY  L+  + K
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 205 AGMIDEAFRLLHNLV--------------EDGHKPFPSL--YAPIIKGMFRRGQFDDAFC 248
           AG I +AF +   L+              ED H   P++  Y  ++ G+ +  + D A  
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
               M   G  PN  VY  LI    + G+   A    ++MT+ G  P    +  + D + 
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 309 NCGKHDLAEKI 319
             G+ DLA K+
Sbjct: 695 KDGRLDLAMKV 705



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 22/341 (6%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I +M     + +P   + ++  +        A ++ N+ T   C    ++YN  + ++
Sbjct: 332 RIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSI 391

Query: 63  C------EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           C         L   A  +   M+    V +K   A      C  GK  +A + ++EM  K
Sbjct: 392 CGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRK 451

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           GF P       ++  L +A  +E A  +  +M   G   D+ T+  LI++ CK+G +E  
Sbjct: 452 GFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQA 511

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +  +G    V TY  LI A  KA  + +A  + H +V+ G +P    Y  ++ G
Sbjct: 512 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 571

Query: 237 MFRRGQFDDAFCFFSEMKIKGH----------------PPNRPVYTMLITMCGRGGRFVE 280
           + + G    AF  ++++                      PN   Y  L+    +  +   
Sbjct: 572 LCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDH 631

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           A   L  M   G  P    +D + DG    GK D A+++ L
Sbjct: 632 AHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 672



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 16/253 (6%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+    S +  T + +I  + K   V  A ++F++     C+   + Y +L+  LC+ 
Sbjct: 516 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 575

Query: 66  KLFHGAYALIRRMI----------------RKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
                A+ +  ++I                R    P+  TY  LV+  C + K+  A E 
Sbjct: 576 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHEL 635

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           L  M   G  P     D L+ G   AG ++SA+++  +M K G++  + T+ SLI+ + K
Sbjct: 636 LDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFK 695

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G ++  +++   + K     +V TY  +I  + + G  ++A +LL  + E G  P    
Sbjct: 696 DGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVT 755

Query: 230 YAPIIKGMFRRGQ 242
           Y  +I G+ +  Q
Sbjct: 756 YTALIDGLGQSWQ 768



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 121/349 (34%), Gaps = 73/349 (20%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L++++    + G+ + A+E   +   F  +   + YN+L+  L         + + + M 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 80  RKGFVPDKRTYAILVNAWCSSGK--------------------------------MREAQ 107
             GF  D+ T     +A C  G+                                  EA 
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAM 296

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            FL  M      P V     L+ G L    L   K+++N M+ +G   +   FNSL+ + 
Sbjct: 297 SFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSY 356

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV------------------------- 202
           C   +  +  ++   +   G       Y I I ++                         
Sbjct: 357 CNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAA 416

Query: 203 ----------------SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                              G  D+AF+L+  ++  G  P  S Y+ +I  +    + + A
Sbjct: 417 NCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKA 476

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           F  F EMK+ G  P+   YT+LI    + G   +A     EM  +G +P
Sbjct: 477 FLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSP 525



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 107/271 (39%), Gaps = 17/271 (6%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           AL +   F G      R++R+    D+    R   +LV   C  G   EA E L  + D 
Sbjct: 144 ALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELGRLKDF 203

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+ P     + LVQ L +AG ++   ++  +M + GF +D  T       +CK G     
Sbjct: 204 GYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA 263

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           ++M   + +     D      +I  + +A   DEA   LH +  +   P    Y  ++ G
Sbjct: 264 LDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSG 320

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             ++ Q        + M  +G  PN  ++  L+        +  A   L  MT  G  P 
Sbjct: 321 FLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPG 380

Query: 297 SRCFDLVTDGLKNCGKH--------DLAEKI 319
              +++    +  CG+         DLAEKI
Sbjct: 381 YVVYNIFIGSI--CGQEKLPSPDLLDLAEKI 409



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 4/222 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L N L+   C   +++ A   + R+   G+ P K TY  LV    S+G++       +EM
Sbjct: 176 LLNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEM 235

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           S+ GF             L   G    A  M+    ++ F LD      +I  + ++   
Sbjct: 236 SESGFCMDRFTVGCFAHALCKEGRWADALDMIE---REDFKLDTVLCTHMISGLMEASYF 292

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +   + +       +V TY+ L+    K   +    R+++ ++ +G  P PSL+  +
Sbjct: 293 DEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSL 352

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGR 274
           +        +  A+   + M   G PP   VY + I ++CG+
Sbjct: 353 VHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQ 394



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 3/189 (1%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G+      Y  L +A    G+ R+A+  L+E+ ++      R  ++LV+     G    A
Sbjct: 134 GYSHTGACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEA 193

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            + + ++   G+     T+N+L++ +  +G+V+    +   + + G C D  T      A
Sbjct: 194 LEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHA 253

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K G   +A  ++     +  K    L   +I G+     FD+A  F   M+     PN
Sbjct: 254 LCKEGRWADALDMIE---REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 310

Query: 262 RPVYTMLIT 270
              Y  L++
Sbjct: 311 VVTYRTLLS 319


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 1/272 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           + + +I    K G VD A ++F K   A  C+     YN+L+  LC+      A A+I  
Sbjct: 48  SYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAE 107

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
             ++ F PD  TY  L+ A    G++ EA     +M+++G+ P +   + ++ GL  A  
Sbjct: 108 ARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARR 167

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A ++ N+MI + F  +L T++ +I+ +CKS +++   ++   +   G   D+  Y  
Sbjct: 168 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 227

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+   S AG +D A  LL  +V  G  P    Y  +I  + + G+ DDA   F E+    
Sbjct: 228 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 287

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
             PN   Y+ LI    R  R  E    + EM 
Sbjct: 288 CSPNVVTYSALIGGYCRASRVDEGGKVMREMA 319



 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 2/290 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVK 66
           M    +  + +T S+I++   + G V  A+E F+      + Q  V+ Y +L+  LC++ 
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 67  LFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               A+ L R+M+  G   P+  TY  LV+  C   ++  A+  + E   + F P V   
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTY 120

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+  L   G ++ A     +M ++G+V  L +FN++I  +C++  +   +E++  +  
Sbjct: 121 NTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID 180

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                ++ TY ++I  + K+  +DEA +LL  +V +G +P    Y P++ G    G+ D 
Sbjct: 181 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 240

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A      M  +G  P+   YT++I    + GR  +A     E+     +P
Sbjct: 241 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSP 290



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 3/282 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K   +D A  V  +    +    V+ YN+L+ AL ++     A A   +M
Sbjct: 84  TYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G+VP   ++  ++   C + ++ +A E   EM D+ F+P +    +++ GL  +  L
Sbjct: 144 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+Q++++M+ +G   DL  +  L+     +G ++  + +   +   G   DV TY ++
Sbjct: 204 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 263

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D+A  +   LV +   P    Y+ +I G  R  + D+      EM  +  
Sbjct: 264 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR-- 321

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            PN   Y  +I       R  EA     EM+E G  P +R +
Sbjct: 322 -PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 362



 Score = 44.3 bits (103), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 32/110 (29%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF-----NKCTA---------------------------F 46
           T +++I++  K G VD+A E+F     NKC+                             
Sbjct: 259 TYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 318

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
            C+  V+ YN++++ L  V     AY + R M   GFVPD RTY  L  A
Sbjct: 319 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRA 368


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 129/278 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +  A +V  +    N     ++YN  +  LC +  F  A + ++ M   G  PD+ 
Sbjct: 549 KTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQA 608

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  ++ A C  GK  +A + L+EM      P +     LV GLL AG ++ AK ++N+M
Sbjct: 609 TYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEM 668

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              GF     T   +++    S   +  +E++  +   GL AD++ Y  L+  +   GM 
Sbjct: 669 ASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMA 728

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             A  +L  ++  G  P    +  +I G  +    D+AF  +++M  +G  PN   +  L
Sbjct: 729 RNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTL 788

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +      GR  EA   L +M ++GL P +  +D++  G
Sbjct: 789 LGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTG 826



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 142/315 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    +++     + ++  F   G  D A+EV  +  A   +  V+ Y +L+   C+
Sbjct: 210 VERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCK 269

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A++L   M+R G +PD  T + LV+  C  G+  EA    +EM   G  P    
Sbjct: 270 GKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVT 329

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+  L  A     +  ++ +M+ +G V+DL  + +L++ + K G++E   ++     
Sbjct: 330 YCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQ 389

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  +  TY +L+ A  +AG ID A ++L  + E    P    ++ II G+ +RG   
Sbjct: 390 SDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLG 449

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A  +  +MK  G  PN   Y  LI    +      A +   +M   G+   +   D + 
Sbjct: 450 KAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLV 509

Query: 305 DGLKNCGKHDLAEKI 319
           +GL+  G  + AE +
Sbjct: 510 NGLRKNGNIEGAEAL 524



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +++  GK G ++ A +V     + N     + Y  L+ A C      GA  ++ +M  
Sbjct: 366 TALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEE 425

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K  +P+  T++ ++N     G + +A +++++M D G  P V     L+ G       E+
Sbjct: 426 KSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEA 485

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +   M+ +G   +    +SL+  + K+G +E    ++  + + GL  D   Y  L+ 
Sbjct: 486 ALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMD 545

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G +  AF++   L+E    P   +Y   I  +   G+F +A  F  EM+  G  P
Sbjct: 546 GLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEP 605

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           ++  Y  +I    R G+  +A   L EM    + P    +  +  GL   G
Sbjct: 606 DQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAG 656



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 131/299 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++  +    + +  ++ Y +L+  L E  +
Sbjct: 598 MRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGV 657

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M   GF P   T+  ++ A   S +     E  + M   G +  +   + 
Sbjct: 658 VKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNT 717

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV  L   G   +A  ++++M+ +G   D  TFN+LI   CKS  ++    +Y  +   G
Sbjct: 718 LVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQG 777

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +++T+  L+  +  AG I EA  +L ++ + G +P    Y  ++ G  ++    +A 
Sbjct: 778 LSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEAL 837

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EM  KG  P    Y  L++   + G   +A     EM   G+   S  +D++ +G
Sbjct: 838 RLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNG 896



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 118/268 (44%), Gaps = 4/268 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN  L AL E      A  ++  M ++G   D  T +  +   C +G + EA   L EM 
Sbjct: 118 YNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAA-LAEML 176

Query: 115 DKGFNPP---VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +G       V G + L+ G      + +A  +V +M  QG  LD+  +NSL+     SG
Sbjct: 177 VRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSG 236

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + +  +E+   +   G+  +V TY  LI    K   +DEAF L   +V  G  P     +
Sbjct: 237 DADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLS 296

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ R GQF +A+  F EM   G  PN   Y  LI    +  R  E+   L EM   
Sbjct: 297 ALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSR 356

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+      +  + D L   GK + A+ +
Sbjct: 357 GVVMDLVMYTALMDRLGKEGKIEEAKDV 384



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 117/260 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ +N+L+   C+V+    A A++ RM  +G   D   Y  LV  +  SG    A E ++
Sbjct: 187 VVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVE 246

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P V     L+        ++ A  +   M++ G + D+ T ++L++ +C+ G
Sbjct: 247 RMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDG 306

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +      ++  + K+G+  +  TY  LI +++KA    E+  LL  +V  G      +Y 
Sbjct: 307 QFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYT 366

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++  + + G+ ++A       +     PN   YT+L+    R G    A   L++M E 
Sbjct: 367 ALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEK 426

Query: 292 GLTPISRCFDLVTDGLKNCG 311
            + P    F  + +GL   G
Sbjct: 427 SVIPNVVTFSSIINGLVKRG 446



 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 114/250 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +++Y +L+  L +      A  ++R        P+  TY +LV+A C +G +  A++ L 
Sbjct: 362 LVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLL 421

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M +K   P V     ++ GL+  G L  A   + KM   G   ++ T+ +LI+   K  
Sbjct: 422 QMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQ 481

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E  +++Y  +   G+ A+      L+  + K G I+ A  L  ++ E G       Y 
Sbjct: 482 GQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYT 541

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+F+ G    AF    E+  K   P+  VY + I      G+F EA ++L EM   
Sbjct: 542 TLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT 601

Query: 292 GLTPISRCFD 301
           GL P    ++
Sbjct: 602 GLEPDQATYN 611



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/276 (23%), Positives = 125/276 (45%), Gaps = 3/276 (1%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++ L  LC   L   A AL   ++R   +   D   +  L++ +C    M  A   ++ M
Sbjct: 154 STALVGLCRTGLVGEAAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERM 213

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + +G    V G + LV G  ++G  ++A ++V +M   G   ++ T+ +LI   CK   +
Sbjct: 214 TTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGM 273

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +    +Y  + + G+  DV T   L+  + + G   EA+ L   + + G  P    Y  +
Sbjct: 274 DEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTL 333

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + +  +  ++     EM  +G   +  +YT L+   G+ G+  EA + L       +
Sbjct: 334 IDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNI 393

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           TP    + ++ D     G  D AE++ LL++  +SV
Sbjct: 394 TPNFVTYTVLVDAHCRAGNIDGAEQV-LLQMEEKSV 428



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 106/241 (43%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ELM    L       + ++     HG+  NA  V ++          + +N+L+   C+ 
Sbjct: 701 ELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKS 760

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A+A+  +M+ +G  P+  T+  L+    S+G++ EA   L +M   G  P     
Sbjct: 761 SHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTY 820

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D+LV G         A ++  +M+ +GF+    T+NSL+    K+G +    E++  + +
Sbjct: 821 DILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKR 880

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+    STY IL+   SK     E   LL ++ E G KP     + + +   R G   +
Sbjct: 881 RGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGE 940

Query: 246 A 246
           A
Sbjct: 941 A 941



 Score = 87.4 bits (215), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 113/271 (41%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ V  + T       V+ YNSL+           A  ++ RM   G  P+  TY  L+ 
Sbjct: 206 ALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIG 265

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C    M EA    + M   G  P V     LV GL   G    A  +  +M K G   
Sbjct: 266 EYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAP 325

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T+ +LI+++ K+      + +   +   G+  D+  Y  L+  + K G I+EA  +L
Sbjct: 326 NHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVL 385

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            +   D   P    Y  ++    R G  D A     +M+ K   PN   ++ +I    + 
Sbjct: 386 RHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKR 445

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           G   +AA+Y+ +M + G+ P    +  + DG
Sbjct: 446 GCLGKAADYMRKMKDSGIAPNVVTYGTLIDG 476



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 2/326 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E MK   +  +  T + +I E+ K   +D A  ++           V+  ++L+  L
Sbjct: 243 EVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGL 302

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C    F  AYAL R M + G  P+  TY  L+++   + +  E+   L EM  +G    +
Sbjct: 303 CRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDL 362

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+  L   G +E AK ++          +  T+  L++  C++G ++   ++   
Sbjct: 363 VMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQ 422

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  +V T+  +I  + K G + +A   +  + + G  P    Y  +I G F+   
Sbjct: 423 MEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQG 482

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   + +M  +G   N  V   L+    + G    A     +M E GL      +  
Sbjct: 483 QEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTT 542

Query: 303 VTDGLKNCGKHDLAEKI--ELLEVSL 326
           + DGL   G    A K+  EL+E +L
Sbjct: 543 LMDGLFKTGNMPAAFKVGQELMEKNL 568



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 100/234 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           + +YN+L+  LC   +   A  ++  M+ +G  PD  T+  L+   C S  +  A     
Sbjct: 712 ITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYA 771

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +G +P +   + L+ GL +AG +  A  +++ M K G   +  T++ L+    K  
Sbjct: 772 QMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKS 831

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                + +Y  +   G     STY  L+   +KAGM+++A  L   +   G     S Y 
Sbjct: 832 NKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYD 891

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            ++ G  +     +      +MK  G  P++   + +     R G   EA   L
Sbjct: 892 ILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARRLL 945



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 137/347 (39%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   ++ +  T   +I+ F K    + A++V+        +    + +SL+  L +   
Sbjct: 458 MKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGN 517

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
             GA AL + M  +G + D   Y  L++    +G M  A +  QE+ +K  +P     ++
Sbjct: 518 IEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNV 577

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +  L   G    AK  + +M   G   D  T+N++I   C+ G+    +++   + +  
Sbjct: 578 FINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNS 637

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP-------------------- 227
           +  ++ TY  L+  + +AG++ +A  LL+ +   G  P                      
Sbjct: 638 IKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVIL 697

Query: 228 ---------------SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                          ++Y  ++  +   G   +A     EM  +G  P+   +  LI   
Sbjct: 698 EIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGH 757

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +      A     +M   GL+P    F+ +  GL++ G+   A+ +
Sbjct: 758 CKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTV 804



 Score = 42.4 bits (98), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 42/96 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSL+    +  + + A  L   M R+G +    TY IL+N W       E +  L++M 
Sbjct: 855 YNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGIEVRILLKDMK 914

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + GF P       + +     G    A++++  + K
Sbjct: 915 ELGFKPSKGTISSMSRAFSRPGMTGEARRLLKTLFK 950


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 143/301 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I  +   G ++NAV++ +   A   +    +Y S++  LC+      A  ++  M
Sbjct: 296 TYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDM 355

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +    + D+  Y  +++ +C+ G +  A+ +  EM  KG          L+ GL  AG L
Sbjct: 356 VHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGEL 415

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++++ +M+ +   +D  T+  L++  CK G++    +++ ++ + G+  +V TY  L
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              + K G +  A  LLH +   G +     Y  +I G+ + G  D A    ++M   G 
Sbjct: 476 SDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGL 535

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT LI    + G    A + L EM + G+ P    ++++ +G    G+ +  +K
Sbjct: 536 KPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKK 595

Query: 319 I 319
           +
Sbjct: 596 L 596



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 126/257 (49%), Gaps = 2/257 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + + +   K G V  A E+ ++ +    +     YNSL+  LC+      A 
Sbjct: 465 VAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAM 524

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             +  M   G  PD  TY  L++A C SG++  A + LQEM D G  P +   ++L+ G 
Sbjct: 525 RTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +E  K+++  M+++    +  T+NSL++  C    ++   E+Y  +C   +  + 
Sbjct: 585 CMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNE 644

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           +TY ILI    KA  + EA    + ++E G +   S Y+ +I+ + ++ +F +A   F +
Sbjct: 645 NTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHD 704

Query: 253 MKIKGHPPNRPVYTMLI 269
           M+ +G      VY   I
Sbjct: 705 MRKEGFTAEPDVYNFYI 721



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 133/302 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  + + +     + ++  F   G + +A   F++          + Y +L+  LC 
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCR 411

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +++ M+ +    D+ TY +LV+ +C  GKM EA +    M  +G  P V  
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L  GL   G +++A +++++M  +G  L+  T+NSLI  +CK+G ++  +     + 
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV TY  LI A+ K+G +D A  LL  ++++G KP    Y  ++ G    G+ +
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVE 591

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
                   M  K   PN   Y  L+     G            M    + P    ++++ 
Sbjct: 592 GGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILI 651

Query: 305 DG 306
            G
Sbjct: 652 KG 653



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 149/357 (41%), Gaps = 48/357 (13%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++ Y +S SP+  + ++        +D A+E+F      N    V  YN LL  LC    
Sbjct: 226 VRQYGISPSPEACNAVLSRLP----LDEAIELFQGLPDKN----VCSYNILLKVLCGAGR 277

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV----- 122
              A  L   M      PD  TY IL++ +C+ G++  A + L +M  +G  P       
Sbjct: 278 VEDARQLFDEMASP---PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTS 334

Query: 123 -------RGR-----------------------DLLVQGLLNAGYLESAKQMVNKMIKQG 152
                  +GR                         ++ G  N G L SA++  ++M ++G
Sbjct: 335 VVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKG 394

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+ +LI  +C++GE++   ++   +    L  D  TY +L+    K G + EAF
Sbjct: 395 LATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAF 454

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           ++ + +V+ G  P    Y  +  G+ ++G    A     EM  KG   N   Y  LI   
Sbjct: 455 QVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL 514

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
            + G   +A   + +M   GL P    +  + D L   G+ D A  +  E+L+  ++
Sbjct: 515 CKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIK 571



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 93/218 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T+  M    L     T + +I+   K G +D A ++  +      +  ++ YN L+   
Sbjct: 525 RTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGF 584

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C      G   L+  M+ K   P+  TY  L+  +C    M+   E  + M  +   P  
Sbjct: 585 CMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNE 644

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++L++G   A  ++ A+   N+MI++GF L   ++++LI  + K  +     ++++ 
Sbjct: 645 NTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHD 704

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           + K G  A+   Y   I        ++    L   LVE
Sbjct: 705 MRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVE 742



 Score = 40.4 bits (93), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/152 (19%), Positives = 63/152 (41%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M   N+  +  T + +++++     + +  E++    + N +     YN L+   
Sbjct: 595 KLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +    A      MI KGF     +Y+ L+       K  EA++   +M  +GF    
Sbjct: 655 CKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEGFTAEP 714

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
              +  +    N   LE+   + +++++   V
Sbjct: 715 DVYNFYIDFNFNEDNLEATLALCDELVEASIV 746


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 138/327 (42%), Gaps = 13/327 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  S  T S +I+ F K   +D A  +F       C   ++ +N+L+   C  K 
Sbjct: 317 MLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKR 376

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M   G V +  TY  L++ +C  G +  AQ+ LQEM   G  P V   + 
Sbjct: 377 VDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNT 436

Query: 128 LVQGLLNAGYLESAKQMVNKMIK-----------QGFVLDLETFNSLIETICKSGEVEFC 176
           L+ GL + G L+ A +M   M K            G   D++T+N LI  +   G+    
Sbjct: 437 LLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEA 496

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   G+  D  TY  +I  + K   +DEA ++  ++      P    +  +I G
Sbjct: 497 EELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 556

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             + G+ DD    F EM  +G   N   Y  LI    + G    A +   EM   G+ P 
Sbjct: 557 YCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPD 616

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +     +  GL +  K +L   + +LE
Sbjct: 617 TITIRNMLTGLWS--KEELKRAVAMLE 641



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 14/278 (5%)

Query: 58  LLFALCEVKLFHGAYALIRRMI-RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           ++   C    +  A  L++ M+ RK   PD  TY  L+NA+   GK  EA+E   EM  +
Sbjct: 261 MINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 320

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P       ++ G      L++A+ M   M  +G   D+ TFN+LI   C++  V+  
Sbjct: 321 GIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDG 380

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +++ + + + GL A+  TY  LI    + G ++ A  LL  +V  G  P       ++ G
Sbjct: 381 IKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDG 440

Query: 237 MFRRGQFDDAFCFF-----SEMKIKG-HP-----PNRPVYTMLITMCGRGGRFVEAANYL 285
           +   G+  DA   F     S+M I   HP     P+   Y +LI+     G+F+EA    
Sbjct: 441 LCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 500

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EM   G+ P +  ++ V  GL  C +  L E  ++ +
Sbjct: 501 EEMPHRGIVPDTITYNSVIHGL--CKQSRLDEATQMFD 536



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 138/318 (43%), Gaps = 11/318 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++   +S    T + +I  F K G    A E++++          + Y+S++   C+ 
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  +   M  KG  PD  T+  L+  +C + ++ +  + L EM++ G        
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G L +A+ ++ +M+  G   ++ T N+L++ +C +G+++  +EM+ ++ K
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQK 459

Query: 186 L-----------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
                       G+  DV TY ILI  +   G   EA  L   +   G  P    Y  +I
Sbjct: 460 SKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVI 519

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ ++ + D+A   F  M  K   PN   +T LI    + GR  +      EM   G+ 
Sbjct: 520 HGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIV 579

Query: 295 PISRCFDLVTDGLKNCGK 312
             +  +  +  G +  G 
Sbjct: 580 ANAITYITLIHGFRKVGN 597



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 143/321 (44%), Gaps = 22/321 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    + G V  AV + ++      Q   + Y +++  +C++     A  L+R+M
Sbjct: 181 TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 240

Query: 79  IRKGFVP--------DKRTYAILVNAWCSSGKMREAQEFLQEMSD-KGFNPPVRGRDLLV 129
                +         ++RT   ++N +CSSG+  EAQ+ LQEM + K  +P V   + L+
Sbjct: 241 EEVSHIKPNVVIWPLERRT--CMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALI 298

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
              +  G    A+++ ++M+ +G +    T++S+I+  CK   ++    M+Y +   G  
Sbjct: 299 NAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 358

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+ T+  LI    +A  +D+  +LLH + E G       Y  +I G  + G  + A   
Sbjct: 359 PDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDL 418

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM-----------GLTPISR 298
             EM   G  PN      L+      G+  +A      M +            G+ P  +
Sbjct: 419 LQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQ 478

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            ++++  GL N GK   AE++
Sbjct: 479 TYNILISGLINEGKFLEAEEL 499



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 121/274 (44%), Gaps = 11/274 (4%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+L+ A  +   F  A  L   M+ +G +P   TY+ +++ +C   ++  A+    
Sbjct: 291 VVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFY 350

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+ KG +P +   + L+ G   A  ++   +++++M + G V +  T+ +LI   C+ G
Sbjct: 351 LMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVG 410

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-----DGHKPF 226
           ++    ++   +   G+C +V T   L+  +   G + +A  +   + +     D   PF
Sbjct: 411 DLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPF 470

Query: 227 PSL------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
             +      Y  +I G+   G+F +A   + EM  +G  P+   Y  +I    +  R  E
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDE 530

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           A      M     +P    F  + +G    G+ D
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 564



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 119/264 (45%), Gaps = 11/264 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L  +  T + +I  F + G ++ A ++  +  +      V+  N+LL  L
Sbjct: 382 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGL 441

Query: 63  CEVKLFHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           C+      A  + + M +            G  PD +TY IL++   + GK  EA+E  +
Sbjct: 442 CDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYE 501

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +G  P     + ++ GL     L+ A QM + M  + F  ++ TF +LI   CK+G
Sbjct: 502 EMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 561

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+  +E++  + + G+ A+  TY  LI    K G I+ A  +   ++  G  P      
Sbjct: 562 RVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIR 621

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKI 255
            ++ G++ + +   A     ++++
Sbjct: 622 NMLTGLWSKEELKRAVAMLEDLQM 645



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 125/294 (42%), Gaps = 11/294 (3%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +++A+++F           V+ +  L+  +  +       +L R+M  +    +  ++ I
Sbjct: 59  LEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTI 118

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+  +CS  K+  A     +++  GF+P V     L+ GL     +  A  + ++M K  
Sbjct: 119 LMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCKPN 178

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V    TF +L+  +C+ G V   V +   + + GL  +  TY  ++  + K G    A 
Sbjct: 179 VV----TFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSAL 234

Query: 213 RLLHNLVEDGH-KPFPSLY-----APIIKGMFRRGQFDDAFCFFSEM-KIKGHPPNRPVY 265
            LL  + E  H KP   ++       +I G    G++ +A     EM + K   P+   Y
Sbjct: 235 NLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTY 294

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             LI    + G+F EA     EM   G+ P +  +  + DG     + D AE +
Sbjct: 295 NALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHM 348


>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial-like [Brachypodium distachyon]
          Length = 547

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 39/366 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+   L +S  T  LI+  + +   V  AVE F K ++F  +  +  YN L+ 
Sbjct: 180 VWSLVEAMRCRGL-LSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLID 238

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAW---------------------- 97
            L + K    A+A+ + M R G FVPD +TY +L+  W                      
Sbjct: 239 VLSKSKQVKKAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIK 298

Query: 98  -------------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
                        C SGK  EA +  +EM   G  P      +L+ GL +   L+ A + 
Sbjct: 299 PDVVAYGTLISSFCKSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKY 358

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
                  GF +++ T N+++   C+S + +   +M   + K G+  +  TY I++  + K
Sbjct: 359 FELSKASGFPMEVPTCNAVVGAYCRSSKFQHAFKMVDEMRKTGIGPNARTYDIILQYLIK 418

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF-RRGQFDDAFCFFSEMKIKGHPPNRP 263
           +  I+EA+ +   +  +G +P  + Y  ++ GMF    + D A   + +MK KG  P   
Sbjct: 419 SQKIEEAYNVFQRMGMEGCEPQLNTYTMMV-GMFCSNERVDMALKVWKQMKEKGVLPCMH 477

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +++ LI       R  EA  Y  EM + G+ P  + F  + + L   G+  LA+ + L  
Sbjct: 478 MFSSLINGLCFENRLEEACVYFQEMLDKGIRPPGQLFSNLKEALIEGGRISLAQDMALKL 537

Query: 324 VSLRSV 329
            +LR  
Sbjct: 538 DTLRKT 543



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 126/278 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     V+ +      +  V+ Y +L+ + C+      A  + R 
Sbjct: 267 KTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFCKSGKCDEAIKVFRE 326

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ +     GF   V   + +V     +  
Sbjct: 327 MEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVPTCNAVVGAYCRSSK 386

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A +MV++M K G   +  T++ +++ + KS ++E    ++  +   G    ++TY +
Sbjct: 387 FQHAFKMVDEMRKTGIGPNARTYDIILQYLIKSQKIEEAYNVFQRMGMEGCEPQLNTYTM 446

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++        +D A ++   + E G  P   +++ +I G+    + ++A  +F EM  KG
Sbjct: 447 MVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSSLINGLCFENRLEEACVYFQEMLDKG 506

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P   +++ L      GGR   A +  +++  +  TP
Sbjct: 507 IRPPGQLFSNLKEALIEGGRISLAQDMALKLDTLRKTP 544



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 8/196 (4%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+L   G+L   +   A++      +QGF    E+F++LIE + K  +      +  ++ 
Sbjct: 135 RNLSNAGILALAFFRWAER------QQGFRYTAESFHNLIEALGKIKQFRLVWSLVEAMR 188

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL +   T+++++   ++A  + EA      +   G K   S Y  +I  + +  Q  
Sbjct: 189 CRGLLSK-DTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVK 247

Query: 245 DAFCFFSEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            A   F EMK  G   P+   YT+L+   G     +   +   EM + G+ P    +  +
Sbjct: 248 KAHAIFKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTL 307

Query: 304 TDGLKNCGKHDLAEKI 319
                  GK D A K+
Sbjct: 308 ISSFCKSGKCDEAIKV 323


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 129/272 (47%), Gaps = 1/272 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           + + +I    K G VD A ++F K   A  C+     YN+L+  LC+      A A+I  
Sbjct: 98  SYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITE 157

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
             ++ F PD  TY  L+ A    G++ EA     +M+++G+ P +   + ++ GL  A  
Sbjct: 158 ARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARR 217

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A ++ N+MI + F  +L T++ +I+ +CKS +++   ++   +   G   D+  Y  
Sbjct: 218 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 277

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+   S AG +D A  LL  +V  G  P    Y  +I  + + G+ DDA   F E+    
Sbjct: 278 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANK 337

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
             PN   Y+ LI    R  R  E    + EM 
Sbjct: 338 CSPNVVTYSALIGGYCRASRVDEGGKVMREMA 369



 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 2/290 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVK 66
           M    +  + +T S+I++   + G V  A+E F+      + Q  V+ Y +L+  LC++ 
Sbjct: 51  MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 110

Query: 67  LFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               A+ L R+M+  G   P+  TY  LV+  C   ++  A+  + E   + F P V   
Sbjct: 111 RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTY 170

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+  L   G ++ A     +M ++G+V  L +FN++I  +C++  +   +E++  +  
Sbjct: 171 NTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMID 230

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                ++ TY ++I  + K+  +DEA +LL  +V +G +P    Y P++ G    G+ D 
Sbjct: 231 RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 290

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           A      M  +G  P+   YT++I    + GR  +A     E+     +P
Sbjct: 291 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSP 340



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 131/282 (46%), Gaps = 3/282 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K   +D A  V  +    +    V+ YN+L+ AL ++     A A   +M
Sbjct: 134 TYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQM 193

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G+VP   ++  ++   C + ++ +A E   EM D+ F+P +    +++ GL  +  L
Sbjct: 194 TEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQL 253

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+Q++++M+ +G   DL  +  L+     +G ++  + +   +   G   DV TY ++
Sbjct: 254 DEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVV 313

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +D+A  +   LV +   P    Y+ +I G  R  + D+      EM  +  
Sbjct: 314 IDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR-- 371

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            PN   Y  +I       R  EA     EM+E G  P +R +
Sbjct: 372 -PNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTY 412



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 117/264 (44%), Gaps = 2/264 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE-FLQEM 113
           YN L+   C       A++L+R M  +G   + RT +I++   C  G++ +A E F   +
Sbjct: 28  YNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASL 87

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGE 172
                 P V     L+ GL   G +++A  +  KM+  G    +  T+N+L++ +CK   
Sbjct: 88  ELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDR 147

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++    +     K     DV TY  L+ A+ + G +DEA      + E+G+ P    +  
Sbjct: 148 LDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNA 207

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           II G+ R  +  DA   F+EM  +   PN   Y+++I    +  +  EA   L  M   G
Sbjct: 208 IITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG 267

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
             P    +  +  G    G+ D A
Sbjct: 268 CRPDLVAYTPLVLGFSAAGRLDSA 291



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 4/237 (1%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY +L+  +C++  +  A   L+EM  +G     R   +++QGL   G +  A +  +  
Sbjct: 27  TYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDAS 86

Query: 149 IKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAG 206
           ++      D+ ++ +LI  +CK G V+   +++  +   G C  +  TY  L+  + K  
Sbjct: 87  LELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQD 146

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +D A  ++    +    P    Y  ++  +F+ G+ D+A   F++M  +G+ P    + 
Sbjct: 147 RLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFN 206

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            +IT   R  R  +A     EM +    P    + +V DGL  C    L E  +LL+
Sbjct: 207 AIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGL--CKSDQLDEAQQLLD 261



 Score = 44.3 bits (103), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 32/110 (29%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF-----NKCTA---------------------------F 46
           T +++I++  K G VD+A E+F     NKC+                             
Sbjct: 309 TYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM 368

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
            C+  V+ YN++++ L  V     AY + R M   GFVPD RTY  L  A
Sbjct: 369 ACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYRGLKRA 418


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 3   KTIELM-KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           K +E+M +  N+  + +T +++I+ +     ++ A  V +K  A   Q  V+ YN++  A
Sbjct: 148 KLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARA 207

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +      A  LI +M      P++RT  I+++ +C  G M EA  FL  M + G +P 
Sbjct: 208 YAQNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPN 267

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++G L+        + +  M + G   D+ TF++++     +G +E C E++ 
Sbjct: 268 PVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFN 327

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+  D+  Y IL     +AG   +A  LL ++ + G +P   ++  II G    G
Sbjct: 328 DMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAG 387

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D AF    +M   G  PN   Y  LI   G   +  +A   L  M E G+ P      
Sbjct: 388 KMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQ 447

Query: 302 LVTDGLKNCGKHDLAEKI 319
           LV D  +  G    A +I
Sbjct: 448 LVADAWRAIGLFKEANRI 465



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 146/336 (43%), Gaps = 36/336 (10%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L+ +I  F + G VD A+++F K   + C+     YN+L+         + +  L+  M 
Sbjct: 95  LNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMG 154

Query: 80  RKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +   V P+ RTY IL+ AWC+  K+ EA   L +M   G  P V   + + +     G  
Sbjct: 155 QDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET 214

Query: 139 ESAKQMVNKM-------------------IKQG-------FVLDLE---------TFNSL 163
           E A++++ KM                    K+G       F+  ++          FNSL
Sbjct: 215 ERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSL 274

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+    + +     E    + + G+  DV T+  ++ A S AG+++    + +++V+ G 
Sbjct: 275 IKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGI 334

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    Y+ + KG  R GQ   A    + M   G  PN  ++T +I+     G+   A  
Sbjct: 335 EPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFR 394

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +M EMG +P  + ++ +  G     +   AE++
Sbjct: 395 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEL 430



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G    A  VFN  T    +  ++ Y +L+ AL   K F    AL+ ++   G  PD    
Sbjct: 36  GKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILL 95

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             ++NA+  SGK+ EA +  Q+M + G  P     + L++G   AG    + +++  M +
Sbjct: 96  NAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQ 155

Query: 151 QGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
              V  +  T+N LI+  C   ++E    + + +   G+  DV TY  +  A ++ G  +
Sbjct: 156 DENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETE 215

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A RL+  +  +  KP       II G  + G   +A  F   MK  G  PN  V+  LI
Sbjct: 216 RAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLI 275

Query: 270 T--MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +       V+ A  L  M E G+ P    F  + +   + G  +  E+I
Sbjct: 276 KGYLDTTDTNGVDEA--LTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEI 325



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 99/231 (42%), Gaps = 3/231 (1%)

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N     GK  EAQ     ++++G  P +     LV  L      +S   +++K+   G
Sbjct: 28  LMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNG 87

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D    N++I    +SG+V+  ++++  + + G     STY  LI     AG   E+ 
Sbjct: 88  MKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESM 147

Query: 213 RLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +LL  + +D + KP    Y  +I+    + + ++A+    +M   G  P+   Y  +   
Sbjct: 148 KLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARA 207

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + G    A   +++M    + P  R   ++  G   C + ++ E +  L
Sbjct: 208 YAQNGETERAERLILKMPYNIVKPNERTCGIIISGY--CKEGNMPEALRFL 256



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 1/201 (0%)

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V  R  L+  L+  G    A+ + N + ++G    L T+ +L+  + +    +    +  
Sbjct: 22  VHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLS 81

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            V   G+  D      +I A S++G +DEA ++   + E G KP  S Y  +IKG    G
Sbjct: 82  KVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAG 141

Query: 242 QFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           +  ++      M + +   PN   Y +LI       +  EA N L +M   G+ P    +
Sbjct: 142 RPYESMKLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTY 201

Query: 301 DLVTDGLKNCGKHDLAEKIEL 321
           + +       G+ + AE++ L
Sbjct: 202 NTMARAYAQNGETERAERLIL 222



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 5/151 (3%)

Query: 177 VEMYYSVCKL---GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           V + +S  KL     C  V     L+  +   G   EA  + +NL E+GHKP    Y  +
Sbjct: 4   VTISFSTAKLRGNNSCQTVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGHKPTLITYTTL 63

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +  + R+ +F       S++   G  P+  +   +I      G+  EA     +M E G 
Sbjct: 64  VAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSESGKVDEAMKIFQKMKEYGC 123

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            P +  ++ +  G    G+    E ++LLE+
Sbjct: 124 KPTTSTYNTLIKGFGIAGRP--YESMKLLEM 152



 Score = 44.7 bits (104), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 35/179 (19%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + LM+ + +     T S I+  +   GL++N  E+FN       +  +  Y+ L    
Sbjct: 289 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGY 348

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR------------------ 104
                   A AL+  M + G  P+   +  +++ WC++GKM                   
Sbjct: 349 VRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNL 408

Query: 105 -----------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                            +A+E L  M ++G  P +    L+       G  + A +++N
Sbjct: 409 KTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 467


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 36/338 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+   K  L+ +A+ +F+  T+      V+ YNSL+   C V  +  A  L+  M
Sbjct: 197 TYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R    PD  T+ ILV+A C  G++ EAQ     M  +G  P +   + L++G   +  +
Sbjct: 257 VRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNV 316

Query: 139 ESAKQMVNKMIKQG-----------------------------------FVLDLETFNSL 163
             A+++ N+M+K+G                                    V +L T+NSL
Sbjct: 317 SEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSL 376

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+ +CK G +    E+   +C  G   D+ TY I + A  K+   ++A  L   +V+ G 
Sbjct: 377 IDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GI 435

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y  I++   +  +   A      + I G  PN   YT++I    +   F EA  
Sbjct: 436 WPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMT 495

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            L +M +    P +  F+ +   L+   + D AEK+ L
Sbjct: 496 LLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRL 533



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 1/292 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + + +M   N++    T +++++   K G +  A  VF        +  ++ YN+L+   
Sbjct: 251 RLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGF 310

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L  RM+++G  PD   Y +L+N +C    + EA    +E+  K   P +
Sbjct: 311 CLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNL 370

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ GL   G +   +++V++M  +G   D+ T+N  ++  CKS   E  + ++  
Sbjct: 371 ATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQ 430

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D   Y +++    K   +  A   L +L+  G  P    Y  +I  + +   
Sbjct: 431 IVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCS 489

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           FD+A    S+M     PP+   +  +I          +A    +EM E GL 
Sbjct: 490 FDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLV 541



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 1/296 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K+G   +A+++  K      +  ++ Y++++  LC+ +L   A  L   +  +G
Sbjct: 166 LINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRG 225

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            + D   Y  L++  CS G+ REA   L  M     NP     ++LV  L   G +  A+
Sbjct: 226 ILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQ 285

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   M+K+G   D+ T+N+L+E  C S  V    E++  + K GL  DV  Y +LI   
Sbjct: 286 GVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGY 345

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA  L   +      P  + Y  +I G+ + G+         EM  +G  P+ 
Sbjct: 346 CKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDI 405

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             Y + +    +   + +A +   ++ + G+ P    +D++ +      K  +AE+
Sbjct: 406 VTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEE 460



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 136/307 (44%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++ S  TL+++I  +     +  A  +         Q  ++ +N+L+   C   +   A 
Sbjct: 86  ITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAM 145

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A    ++ KG+  D+ +Y  L+N  C +G+ R+A + LQ+M +    P +     ++ GL
Sbjct: 146 AFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGL 205

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +  A ++ + +  +G ++D+  +NSLI   C  G+      +   + +  +  D 
Sbjct: 206 CKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDD 265

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+ IL+ A+ K G I EA  +   +++ G KP    Y  +++G        +A   F+ 
Sbjct: 266 YTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNR 325

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +G  P+   Y +LI    +     EA     E+    L P    ++ + DGL   G+
Sbjct: 326 MVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGR 385

Query: 313 HDLAEKI 319
               +++
Sbjct: 386 MSCVQEL 392



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 2/295 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K   VD+ +  FN+    +    + +++ LL A+  +  +  A +L  ++  KG  P   
Sbjct: 32  KFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIA 91

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T  IL+N +C    +  A   L  +   GF P +   + L+ G    G +  A      +
Sbjct: 92  TLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDL 151

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + +G+ LD  ++ SLI  +CK+G+    +++   + +  +  ++ TY  +I  + K  +I
Sbjct: 152 MAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLI 211

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
            +A RL   +   G       Y  +I G    GQ+ +A    + M      P+   + +L
Sbjct: 212 ADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNIL 271

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +    + GR VEA      M + G  P    ++ + +G   C  ++++E  EL  
Sbjct: 272 VDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGF--CLSNNVSEARELFN 324



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 1/140 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN  L A C+ K +  A +L R+++ +G  PD   Y ++V  +C   K++ A+E LQ
Sbjct: 405 IVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEEALQ 463

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +   G  P VR   +++  L      + A  +++KM       D  TF ++I  + +  
Sbjct: 464 HLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERN 523

Query: 172 EVEFCVEMYYSVCKLGLCAD 191
           E +   ++   + + GL  D
Sbjct: 524 ETDKAEKLRLEMIERGLVND 543


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 142/279 (50%), Gaps = 2/279 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   + G    A+E+  + T F C    + +N L+  LC  K  +  + L+RR+
Sbjct: 220 SFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRL 279

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  TY  +++ +C +G+M +A     +M + G  P     ++L+ G   A  
Sbjct: 280 QRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALD 339

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +ESA +M  ++I +    D+ TF+SLI+  C+ G+++  + ++  + +  +  +V T+ I
Sbjct: 340 MESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSI 399

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I ++ K     EA   L  L +     P   +Y P+I  + + GQ ++A    ++M+ K
Sbjct: 400 IIHSLCKQNRSAEALGFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEK 459

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  P++  YT+LI      GR  EA     +M E G  P
Sbjct: 460 GCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRP 498



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 154/327 (47%), Gaps = 14/327 (4%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL-----CE 64
           P ++  S Q+ S +I    + G   +A+++F++ T     Q   L +++ F+        
Sbjct: 104 PLSVPPSEQSYSHVITLLCRSGRHRDALKLFDQMT----DQSGYLPDAVFFSFVAGSCTN 159

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVR 123
             L   A  L+ +  + G   +   Y  L+N   + G+ ++A    +     G ++P   
Sbjct: 160 AGLLDAAVTLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGW 219

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             +++++G+   G  + A ++V +M + G   D  T N L++ +C++ +V    ++   +
Sbjct: 220 SFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRL 279

Query: 184 CKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
            + G+C  +V TY  +I    KAG +++A  + ++++E G +P    Y  +I G  +   
Sbjct: 280 QRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALD 339

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   + ++ ++  PP+   ++ LI    R G+  +A     EM +  + P    F +
Sbjct: 340 MESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSI 399

Query: 303 VTDGLKNCGKHDLAEKIELL-EVSLRS 328
           +   L  C ++  AE +  L E+++R+
Sbjct: 400 IIHSL--CKQNRSAEALGFLRELNMRA 424



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 75/154 (48%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ + + G +D+A+ ++ +    + Q  V  ++ ++ +LC+      A   +R +
Sbjct: 361 TFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLREL 420

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R    P    Y  +++  C  G++ EA   + +M +KG +P      +L+ G    G 
Sbjct: 421 NMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGR 480

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A  + +KM++ G   D  T NS I  + K+G
Sbjct: 481 IPEAITLFHKMVETGCRPDKITVNSFISCVLKAG 514



 Score = 45.1 bits (105), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 10/149 (6%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV----LLYN 56
           +WK    M  +++  +  T S+II    K    + + E        N +  +     +YN
Sbjct: 381 IWKE---MGQHHIQPNVYTFSIIIHSLCKQ---NRSAEALGFLRELNMRADIAPQTFIYN 434

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            ++  LC+      A  ++  M  KG  PDK TY IL+   C  G++ EA     +M + 
Sbjct: 435 PVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVET 494

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           G  P     +  +  +L AG      Q++
Sbjct: 495 GCRPDKITVNSFISCVLKAGMPNEVDQIM 523


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 2/269 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+     +     A  L   M  KG   D   Y  +++  C SG ++ A     
Sbjct: 295 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 354

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM+DKG  P       L+ G+  AG +E+A+ +VN+M  +G  L+   FN+LI+  C+SG
Sbjct: 355 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 414

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+  + +   + K GL +DV  Y  +   + K    DEA  LL ++VE G  P    + 
Sbjct: 415 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 474

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    + G F +A   F EM+ KG+ PN   Y +LI    + G   EA     E+   
Sbjct: 475 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 534

Query: 292 GLTP-ISRCFDLVTDGLKNCGKHDLAEKI 319
           GL P +  C  L+  G    GK D+A K+
Sbjct: 535 GLIPDVYTCTSLI-HGECIDGKVDMALKL 562



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 39/328 (11%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+   ++ +  T +L+I  F   G ++ A  +F +      +  V +Y S++   C 
Sbjct: 283 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 342

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--FNPPV 122
                 A  L   M  KG +P   TY  L++  C +G+M  AQ  + EM  KG   NP +
Sbjct: 343 SGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI 402

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G   +G ++ A ++   M K+G   D+  +NS+   +CK    +    + +S
Sbjct: 403 --FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFS 460

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-- 240
           + + G+  +  ++  LI    K G   EA R+   + E G+ P    Y  +I G  +R  
Sbjct: 461 MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 520

Query: 241 ---------------------------------GQFDDAFCFFSEMKIKGHPPNRPVYTM 267
                                            G+ D A   F EM  +G  PN   YT 
Sbjct: 521 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 580

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +I+   + GR  EA     EM E GLTP
Sbjct: 581 MISGLSKDGRSEEAFKLYDEMKETGLTP 608



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 119/227 (52%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + ++P   + +I+ + + G+VD A+ +         +  V  YNS+   LC++  
Sbjct: 391 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 450

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+ +G  P+  ++  L++ +C  G   EA+   +EM +KG  P +   ++
Sbjct: 451 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 510

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G ++ A ++ +++  +G + D+ T  SLI   C  G+V+  ++++  + + G
Sbjct: 511 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 570

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
           L  +V TY  +I  +SK G  +EAF+L   + E G  P  ++Y+ ++
Sbjct: 571 LVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 148/313 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   ++ V+  +L+++++   K G V+   ++ ++  A   +  V+ YN+ +    +   
Sbjct: 216 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 275

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
             G   ++  M ++G   +  TY +L++ + + GK+ EAQ   +EM +KG    V     
Sbjct: 276 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 335

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++     +G ++ A  + ++M  +G +    T+ +LI  +CK+G++E    +   +   G
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   +  LI    ++GM+DEA RL   + + G +     Y  I  G+ +  + D+A 
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M  +G  PN   +T LI +  + G FVEA     EM E G  P    ++++ DG 
Sbjct: 456 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGY 515

Query: 308 KNCGKHDLAEKIE 320
              G    A K++
Sbjct: 516 SKRGNMKEAHKLK 528



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 11/295 (3%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           LVD+A      C    C +       ++ L     + K+F  A      M +KGF  D+R
Sbjct: 138 LVDDA------CNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDER 191

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           +  + + A    G++     F + M +      V    +++ GL   G +E  +++++++
Sbjct: 192 SCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 251

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   ++ T+N+ IE   K  ++    E+   + K G+  +V TY +LI   S  G I
Sbjct: 252 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 311

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA RL   + E G +    +Y  II    R G    A   F EM  KG  P+   Y  L
Sbjct: 312 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 371

Query: 269 ITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           I    + G+ +EAA  LV EM   G+      F+ + DG    G  D A +++++
Sbjct: 372 IHGVCKAGQ-MEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV 425



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 103/242 (42%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           RRM+         +  I+++  C  G +   ++ + E++ KG    V   +  ++G    
Sbjct: 214 RRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKR 273

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L    +++  M K+G   ++ T+  LI      G++E    ++  + + G+ ADV  Y
Sbjct: 274 LDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVY 333

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    ++G +  A  L   + + G  P    Y  +I G+ + GQ + A    +EM+ 
Sbjct: 334 TSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQG 393

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG   N  ++  LI      G   EA    V M + GL      ++ +  GL    + D 
Sbjct: 394 KGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 453

Query: 316 AE 317
           A+
Sbjct: 454 AK 455



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 78/151 (51%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + +L+   C+   F  A  + R M  KG VP+  TY +L++ +   G M+EA +   E+ 
Sbjct: 473 FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE 532

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P V     L+ G    G ++ A ++ ++M ++G V ++ T+ ++I  + K G  E
Sbjct: 533 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 592

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
              ++Y  + + GL  D + Y  L+ ++  A
Sbjct: 593 EAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 623


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 131/299 (43%), Gaps = 5/299 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G V  A  V  +            Y S++   C+      AY L+  M
Sbjct: 228 TYTVVINGLVKAGKVAEAERVLQEMPVPTLAN----YTSVIGGHCKAGDMGKAYHLLEDM 283

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG+  D  TY  L++  C   ++  A E L+EM    F P +   D+L+ GL  A  L
Sbjct: 284 KRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRL 343

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+ ++  +  +     ++ ++N+LI+   K+  V    +++  +   G   DV TY  
Sbjct: 344 SEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYST 403

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI  +  AG   EA   L  +V     P   +Y+ +I G+ R G+ D A   F  M   G
Sbjct: 404 LIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANG 463

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PN  VY  LI    + GR  +A   + EMTE G +P    +  +  GL    + D A
Sbjct: 464 CQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEA 522



 Score = 97.8 bits (242), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 32/298 (10%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ YN+L+    +    + AY L   M+  G  PD  TY+ L+   C++G+  EA
Sbjct: 358 DCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEA 417

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
             +L+EM  K   P V     ++ GL  AG L++A  + + M+  G   +L  +NSLI  
Sbjct: 418 HSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYG 477

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF-------------- 212
           +CK+G +         + + G   D  TY  LI  + +    DEA               
Sbjct: 478 LCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEIS 537

Query: 213 ------------------RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
                             R+L  ++  G+ P    YA +I+ + +     +A     +M 
Sbjct: 538 ETSCNVVIASLRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMI 597

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             G  P+      L+    R  + V A  +L EM  +G  P    +  + + L   GK
Sbjct: 598 GAGIKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGK 655



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 118/277 (42%), Gaps = 16/277 (5%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           +  V  YN    AL        AY L +    +  +PD  TY IL+   C+ GK++ A  
Sbjct: 87  RHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACS 146

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             +EM D+G  P V     L+  L  +G LE A +   KM     +    T+  LI+ + 
Sbjct: 147 LYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKM---SSIPCAATWTILIDGLF 203

Query: 169 KSGEV-EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           ++  V E C   Y+   K     +  TY ++I  + KAG + EA R+L  +      P P
Sbjct: 204 RAIRVDEAC--YYFEEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEM------PVP 255

Query: 228 SL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           +L  Y  +I G  + G    A+    +MK KG+  +   Y  LI    R      A   L
Sbjct: 256 TLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELL 315

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            EM      P    +D++  GL  C    L+E  +LL
Sbjct: 316 EEMKSNDFVPDIFTYDILIAGL--CRAKRLSEARDLL 350



 Score = 84.0 bits (206), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 127/330 (38%), Gaps = 63/330 (19%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  L+  LC       A +L   M+ +G  P   T   L+NA C SG +  A  + ++
Sbjct: 126 ITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEK 185

Query: 113 MSD-----------KGFNPPVRGRD--------------------LLVQGLLNAGYLESA 141
           MS             G    +R  +                    +++ GL+ AG +  A
Sbjct: 186 MSSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTYTVVINGLVKAGKVAEA 245

Query: 142 KQMVNK-------------------------------MIKQGFVLDLETFNSLIETICKS 170
           ++++ +                               M ++G+  D  T+N+LI   C+ 
Sbjct: 246 ERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRL 305

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSL 229
            E++   E+   +       D+ TY ILI  + +A  + EA  LL  L  ED   P    
Sbjct: 306 QEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVS 365

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I G  +  + +DA+  F EM   G  P+   Y+ LI      GR  EA +YL EM 
Sbjct: 366 YNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMV 425

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + P    +  V  GL   G+ D A  +
Sbjct: 426 GKKILPKVPVYSSVISGLCRAGELDAASTV 455



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 127/334 (38%), Gaps = 37/334 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    + G +D A  VF+   A  CQ  + +YNSL++ LC+      A   ++ M  
Sbjct: 437 SSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTE 496

Query: 81  KGFVPDKRTYAILVNAWCSSGK--------------------------------MREAQE 108
           +G  PD  TY  L+   C   +                                + +AQ 
Sbjct: 497 RGCSPDGVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQR 556

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L+ +   G +P       +++ L     L  A+Q++  MI  G   D  T ++L+  +C
Sbjct: 557 VLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMC 616

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP-FP 227
           +  +    +     + +LG    V TY  L+ A+ KAG   EA  +L  L+   H   FP
Sbjct: 617 RQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLI--SHTSCFP 674

Query: 228 S--LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I     + Q ++A     E+K K    +   Y  L+    R          L
Sbjct: 675 DELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELL 734

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EM           F+++  G    G+ D A ++
Sbjct: 735 REMKRNEFVVNEATFNILIQGFCRLGQTDRAVRV 768



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           Y++LL AL +      A+ ++RR+I      PD+  Y  L+ A+ +  ++ EA+  LQE+
Sbjct: 643 YSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQEL 702

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K     +   + L++GL     L+   +++ +M +  FV++  TFN LI+  C+ G+ 
Sbjct: 703 KSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQT 762

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +  V +   + K+ L    +  K L+  +++A
Sbjct: 763 DRAVRVLSEMKKV-LTPSAAIIKFLVDELARA 793



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 36/222 (16%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           ++ A  V     A         Y +++ +LC+      A  L+  MI  G  PD  T   
Sbjct: 551 LEQAQRVLRVVLATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDA 610

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG---------------- 136
           LV A C   K   A  FL+EM   G  P V     L+  L  AG                
Sbjct: 611 LVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHT 670

Query: 137 --------------------YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
                                +E A+ ++ ++  +  +  +  +N+L++ + ++  ++  
Sbjct: 671 SCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMV 730

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            E+   + +     + +T+ ILI    + G  D A R+L  +
Sbjct: 731 YELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRVLSEM 772



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 1/127 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  +     V+ A  V  +  +    Q ++ YN+LL  L   +     Y L+R M R  
Sbjct: 682 LIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNE 741

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           FV ++ T+ IL+  +C  G+   A   L EM  K   P       LV  L  A   + +K
Sbjct: 742 FVVNEATFNILIQGFCRLGQTDRAVRVLSEMK-KVLTPSAAIIKFLVDELARAEREQESK 800

Query: 143 QMVNKMI 149
            +V + +
Sbjct: 801 DLVKRPV 807


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 119/235 (50%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV+ A + +++  A      V+ Y +L+   C      GA++L+  MI K 
Sbjct: 198 IIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKN 257

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TYAIL++A C  GK++EA+  L EM  +G    V     L+ G      L+ A 
Sbjct: 258 INPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKAT 317

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  KM + G   +  T+ +LI+ +CK G ++   +++  +   G C DV TY ++I  +
Sbjct: 318 ALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGL 377

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            K GM+DEA  +   + ++G  P    +  II+ +F++ + D A     EM  KG
Sbjct: 378 CKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKG 432



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 131/291 (45%), Gaps = 2/291 (0%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           +VD+A+  FN     +    ++ +  +L  L ++K +  A +L ++M  KG  P+  T  
Sbjct: 32  VVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLN 91

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+N +C  G+M  +   L ++   G+ P       L++GL   G ++ +    +K++ Q
Sbjct: 92  ILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQ 151

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           GF ++  ++ +L+  +CK GE    ++    +       +V  Y  +I  + K  +++EA
Sbjct: 152 GFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEA 211

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +     +   G  P    Y  +I G    GQ   AF   +EM +K   PN   Y +LI  
Sbjct: 212 YDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDA 271

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             + G+  EA N L EM   G       +  + DG   C   +L +   L 
Sbjct: 272 LCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGF--CKNQNLDKATALF 320



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P T++L  +++     G V  +V   +K  A   Q   + Y +LL  LC+
Sbjct: 110 LGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCK 169

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   +R +       +   Y  +++  C    + EA +F  EM+ +G  P V  
Sbjct: 170 IGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVIT 229

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----FCVEMY 180
              L+ G   AG L  A  ++N+MI +    ++ T+  LI+ +CK G+V+       EM+
Sbjct: 230 YTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMH 289

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           Y     G  ADV TY  L+    K   +D+A  L   + E G +P    Y  +I G+ + 
Sbjct: 290 YR----GQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKG 345

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   F ++ +KG   +   Y ++I    + G   EA     +M + G  P    F
Sbjct: 346 GRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTF 405

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           +++   L    ++D AEK+
Sbjct: 406 EIIIRSLFKKDENDKAEKL 424



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 5/286 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I  F   G +  +  V  K      Q   +   +L+  LC       +     ++
Sbjct: 89  TLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKV 148

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  ++ +Y  L+N  C  G+ R A +FL+ + D      V   + ++ GL     +
Sbjct: 149 VAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLV 208

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A    ++M  +G   ++ T+ +LI   C +G++     +   +    +  +V TY IL
Sbjct: 209 NEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYAIL 268

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ K G + EA  LL  +   G       Y  ++ G  +    D A   F +MK  G 
Sbjct: 269 IDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGI 328

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            PN+  YT LI    +GGR  +A     ++   G      C D+ T
Sbjct: 329 QPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGC-----CIDVCT 369



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T +++I+   K G V  A  +  +         V+ Y SLL   C+ +    A
Sbjct: 257 NINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKA 316

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            AL  +M   G  P+K TY  L++  C  G++++AQ+  Q++  KG    V   ++++ G
Sbjct: 317 TALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGG 376

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           L   G L+ A  + +KM   G + ++ TF  +I ++ K  E +   ++ + +   GL
Sbjct: 377 LCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEMIAKGL 433


>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 135/290 (46%), Gaps = 3/290 (1%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + K G  D A+ + N    FN +  + +Y+S +  LC+      A    + M   G  PD
Sbjct: 334 YCKKGRSDKAINLLN---FFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPD 390

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              Y I++  +C  G + +A ++L EM   G  P V    LL+     +G +  A+ ++ 
Sbjct: 391 CFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQ 450

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +M+ +G + D+ TFN LI+   K G ++   E+   +   G+  D  TY  LI ++   G
Sbjct: 451 RMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARG 510

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
             +EA  +LH L+  G  P    +  +I G  ++G F++AF  +S M  +   P+    +
Sbjct: 511 YPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCS 570

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            L+    R  R  EA    ++M + GL P    ++ +  G  + G  + A
Sbjct: 571 ALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAA 620



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 132/293 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K I L+  +N+  +    S  + +  K G +  A + F + + F        Y  ++   
Sbjct: 342 KAINLLNFFNVRPNIFVYSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGY 401

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V   + A+  +  M++ G  P   TY +L+NA C SG M  A+  LQ M  +G  P V
Sbjct: 402 CKVGDINKAFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDV 461

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G    GYL+ A ++++ M   G   D  T+N+LI ++   G      ++ + 
Sbjct: 462 VTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHE 521

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  DV T+  +I   SK G  +EAF +   + E   KP     + ++ G  R  +
Sbjct: 522 LIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARR 581

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            D+A   F +M   G  P+  +Y  LI      G    A N +  M + G  P
Sbjct: 582 MDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLP 634



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 138/335 (41%), Gaps = 37/335 (11%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +E M+ + + ++   LSL IE +   G + +  ++  +   +  +  V+ Y  ++ A
Sbjct: 239 WDILEGMQSFGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDA 298

Query: 62  LCEVKLFHGAYALIRRMIRKGFV--------------------------------PDKRT 89
           LC++     A +L+ +MI  G                                  P+   
Sbjct: 299 LCKISCVKVATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNVRPNIFV 358

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y+  +   C  G M EA +  QEMS+ G  P      +++ G    G +  A Q + +M+
Sbjct: 359 YSSFMTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEML 418

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           K G    + T+  LI   CKSG++     +   +   GL  DV T+  LI    K G + 
Sbjct: 419 KFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQ 478

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +AF LL  +   G  P    Y  +I  +  RG  ++A     E+  +G  P+   +T +I
Sbjct: 479 KAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVI 538

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
               + G F EA      M+E  + P     D+VT
Sbjct: 539 DGFSKKGNFEEAFLVWSYMSERHVKP-----DVVT 568



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           KT + M  + L       ++II  + K G ++ A +   +   F     V  Y  L+ A 
Sbjct: 377 KTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGITPSVTTYTLLINAC 436

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L++RM+ +G +PD  T+  L++ +   G +++A E L  M   G +P  
Sbjct: 437 CKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDT 496

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+  L+  GY   AK +++++I++G   D+ TF  +I+   K G  E    ++  
Sbjct: 497 VTYNALIHSLIARGYPNEAKDILHELIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSY 556

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + +  +  DV T   L+    +A  +DEA  L   +++ G KP   LY  +I G    G 
Sbjct: 557 MSERHVKPDVVTCSALLNGYCRARRMDEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGN 616

Query: 243 FDDAFCFFSEMKIKGHPPN 261
            + A    + M   G  PN
Sbjct: 617 MNAACNLVAMMIDDGFLPN 635



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 133/306 (43%), Gaps = 9/306 (2%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++++ +     V  A+ + ++    N    + + NSLL AL        A+ ++  M  
Sbjct: 188 SMLVDCYVTESKVSLALNLIHEIKLLNIFPSMGVCNSLLKALLRSHQLDLAWDILEGMQS 247

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   +    ++ + ++C+ G ++   + L EM + G    V    +++  L     ++ 
Sbjct: 248 FGMHLNASILSLFIESYCAEGNIQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKV 307

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM--YYSVCKLGLCADVSTYKIL 198
           A  ++ KMI  G  +D  + +S+I+  CK G  +  + +  +++V       ++  Y   
Sbjct: 308 ATSLLFKMIHCGISVDSVSVSSVIDGYCKKGRSDKAINLLNFFNV-----RPNIFVYSSF 362

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G + EA +    + E G  P    Y  II G  + G  + AF +  EM   G 
Sbjct: 363 MTKLCKDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGYCKVGDINKAFQYLGEMLKFGI 422

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   YT+LI  C + G    A   L  M   GL P    F+ + DG    G   L + 
Sbjct: 423 TPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLIDGFGKKGY--LQKA 480

Query: 319 IELLEV 324
            ELL++
Sbjct: 481 FELLDI 486



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ FGK G +  A E+ +   +       + YN+L+ +L      + A  ++  +
Sbjct: 463 TFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHEL 522

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+G  PD  T+  +++ +   G   EA      MS++   P V     L+ G   A  +
Sbjct: 523 IRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARRM 582

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           + A  +  KM+  G   DL  +N+LI   C +G +     +   +   G   +++T++
Sbjct: 583 DEANALFLKMLDAGLKPDLVLYNNLIHGFCSAGNMNAACNLVAMMIDDGFLPNITTHR 640


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 142/292 (48%), Gaps = 6/292 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV----KLFHGAYAL 74
           T +++I    K G ++ A +V      +     V+ YN+L+   C++    K++  A A+
Sbjct: 225 TFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYK-ADAV 283

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           ++ M+     P+  T+ IL++ +     +  + +  +EM D+   P V   + L+ GL N
Sbjct: 284 LKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCN 343

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +  A  M +KM+  G   +L T++SLI   CK+G ++  ++M+ SV   G       
Sbjct: 344 GGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRM 403

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y +LI A  K G ID+ F L   +  +G  P    Y  +I G+ R G  + A   F ++ 
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            KG P     + ++   C R G   +AA  L EM++MGL P    ++++  G
Sbjct: 464 NKGLPDLVTFHILMEGYCSR-GESRKAAMLLKEMSKMGLKPRHLTYNIMMKG 514



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 141/311 (45%), Gaps = 3/311 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+ V+     +++  +  +   +   E F +   +  +   +    L+ AL +       
Sbjct: 148 NVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADV 207

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L + MIR+   P+  T+ +++NA C +GKM +A++ +++M   G++P V   + L+ G
Sbjct: 208 EYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDG 267

Query: 132 ---LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
              L   G +  A  ++ +M++     +L TFN LI+   K   +   ++++  +    +
Sbjct: 268 YCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDV 327

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V TY  LI  +   G I+EA  +   +V  G +P    Y  +I G  + G   +A  
Sbjct: 328 IPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALD 387

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F  +K +G  P   +Y MLI    + G+  +      EM   G+ P    ++ +  GL 
Sbjct: 388 MFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLC 447

Query: 309 NCGKHDLAEKI 319
             G  + A+K+
Sbjct: 448 RNGNIEAAKKL 458



 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 39/292 (13%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T +++I+ F K   +  +++VF +    +    V+ YNSL+  LC     + A 
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAI 351

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M+  G  P+  TY  L+N +C +G M+EA +    +  +G  P  R  ++L+   
Sbjct: 352 GMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAY 411

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++    +  +M ++G V D+ T+N LI  +C++G +E   +++  +   GL  D+
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGL-PDL 470

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP------------------------- 227
            T+ IL+      G   +A  LL  + + G KP                           
Sbjct: 471 VTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQ 530

Query: 228 -----------SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
                      + Y  +++G  ++G+ +DA    +EM  KG  PNR  Y ++
Sbjct: 531 MEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 40/229 (17%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I  F K+G++  A+++F+       +    +YN L+ A C++      +AL   M
Sbjct: 368 TYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427

Query: 79  IRKGFVPDKRTYA----------------------------------ILVNAWCSSGKMR 104
            R+G VPD  TY                                   IL+  +CS G+ R
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGYCSRGESR 487

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSL 163
           +A   L+EMS  G  P     +++++G    G L++A  M  +M K+  + +++ ++N L
Sbjct: 488 KAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVL 547

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           ++   + G++E    +   + + GL  +  TY+I+     K  M+D+ F
Sbjct: 548 LQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV-----KEEMVDKGF 591


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 4/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +IE   + G +D AVE+F +      Q  + +Y +L+  LC  +       ++RRM
Sbjct: 225 SYATLIEGLCEAGRIDEAVELFGEMD----QPDMHMYAALVKGLCNAERGEEGLLMLRRM 280

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G+ P  R YA +V+  C   K +EA+E LQEM +KG  P V     ++      G +
Sbjct: 281 KELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRM 340

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++  M  +G   ++ T+N+L++  C  G+V   + +   +   G+  D  TY +L
Sbjct: 341 SDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLL 400

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I      G I+ AFRLL  +  DG       Y  +I  + + G+ D A   F  ++ +G 
Sbjct: 401 IRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGI 460

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            PN   +  LI    + G+   A  +L +M   G TP
Sbjct: 461 KPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTP 497



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 144/327 (44%), Gaps = 39/327 (11%)

Query: 38  EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97
           E+F K  A     CV+   +++ A C+      A  ++  M  +G  P+  TY  LV  +
Sbjct: 314 EMFEKGLA----PCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 369

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
           C+ GK+ +A   L +M   G NP     +LL++G    G++ESA +++  M   G + D 
Sbjct: 370 CNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQ 429

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+N+LI  +CK G  +    ++ S+   G+  +  T+  LI  + K+G  D A++ L  
Sbjct: 430 YTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEK 489

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-------- 269
           +V  G  P    Y+  I+ + +     +   F  EM  K   P+   YT++I        
Sbjct: 490 MVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERN 549

Query: 270 ---------TMCGRG------------------GRFVEAANYLVEMTEMGLTPISRCFDL 302
                     M   G                  GR  EA N L+EM++ G+T  +  ++ 
Sbjct: 550 YGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNT 609

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLRSV 329
           + DG  + G+ D A  I     S+ SV
Sbjct: 610 LMDGHASIGQTDHAVSILKQMTSVASV 636



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 142/370 (38%), Gaps = 52/370 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L     T + +I    K G  D A  +F+       +   + +NSL+  
Sbjct: 414 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+  + +M+  G  PD  TY+  +   C     +E   F+ EM  K   P 
Sbjct: 474 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 533

Query: 122 VRGRDLLVQGLLN-----------------------------------AGYLESAKQMVN 146
                +++  LL                                     G L  A+ ++ 
Sbjct: 534 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 593

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI------- 199
           +M K G  +D   +N+L++     G+ +  V +   +  +    +  TY IL+       
Sbjct: 594 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 653

Query: 200 ---------PA-VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
                    PA V KA  + + F L   + ++   P    Y+ I++G    G+ ++A   
Sbjct: 654 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSL 713

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            S MK      N  +YT L+T   +  R+++A   +  M + G  P    +  +  GL  
Sbjct: 714 VSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLIC 773

Query: 310 CGKHDLAEKI 319
            G+ D A++I
Sbjct: 774 EGQTDKAKEI 783



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 5/259 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           + SLL  L    L   A  L   M R     P   TY  ++ + C    +  A  +L  M
Sbjct: 120 FASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARALRYLSLM 179

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G+ P     + L+ G      ++ A+ + +KM  +GF  D+ ++ +LIE +C++G +
Sbjct: 180 VRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  VE++  + +     D+  Y  L+  +  A   +E   +L  + E G +P    YA +
Sbjct: 240 DEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAV 295

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +    R  +  +A     EM  KG  P     T +I    + GR  +A   L  M   G 
Sbjct: 296 VDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGC 355

Query: 294 TPISRCFDLVTDGLKNCGK 312
            P    ++ +  G  N GK
Sbjct: 356 KPNVWTYNALVQGFCNEGK 374



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 1   MWKTIEL---------MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC 51
           +WK IEL         MK      +  T S I+E F + G  + A  + +     +    
Sbjct: 666 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 725

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             +Y +L+   C+ K +  A+ L+  MI+ GF+P   +Y  L++     G+  +A+E   
Sbjct: 726 EDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFM 785

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
               K ++P      +++ GL+  G+ + +++M+  + +       +T+  L E +
Sbjct: 786 NSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTEEL 841



 Score = 40.8 bits (94), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 59/144 (40%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+S+L    E      A +L+  M       ++  Y  LV  +C S +  +A   +  M 
Sbjct: 694 YSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMI 753

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P +     L+ GL+  G  + AK++      + +  D   +  +I+ + K G  +
Sbjct: 754 QHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSD 813

Query: 175 FCVEMYYSVCKLGLCADVSTYKIL 198
              EM   + ++       TY +L
Sbjct: 814 ISREMIIMLERMNCRPSHQTYAML 837


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 133/270 (49%), Gaps = 2/270 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+ I+LMK  N+ +  +T ++++  + K GL   AV  FN+   + C+   + ++ ++ +
Sbjct: 166 WQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISS 225

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L + +    A +    + +  F PD   Y  LV+ WC +G + EA+    EM   G  P 
Sbjct: 226 LSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPN 284

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +++  L  +G +  A  + ++MI  G   +  TFN+L+    K+G  E  +++Y 
Sbjct: 285 VYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYN 344

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +LG   D  TY  LI +  +   ++EA ++L N V+ G     S + PI   + + G
Sbjct: 345 QMKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLG 403

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             + A   F++MK     PN   Y +L+ M
Sbjct: 404 DVNSAHRMFAKMKDLKCRPNTVTYNILMRM 433



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 114/276 (41%), Gaps = 5/276 (1%)

Query: 14  SVSPQTLSLIIEEFG--KHGL-VDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFH 69
           SVS   +  +IE+ G  +HG+     +  FN  T           Y  ++    +V+ F 
Sbjct: 104 SVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFD 163

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A+ LI  M  +       T+ ILV  +  +G   EA      M D G  P      +++
Sbjct: 164 LAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI 223

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L        A+   + + K  F  D+  + SL+   C++G +     ++  +   G+ 
Sbjct: 224 SSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQ 282

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY I+I A+ ++G I  A  +   +++ G  P    +  +++   + G+ +     
Sbjct: 283 PNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 342

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           +++MK  G PP+   Y  LI    R     EA   L
Sbjct: 343 YNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL 378



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
            K G V++A  +F K     C+   + YN L+    + K       L + M      P+ 
Sbjct: 400 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 459

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
            TY +L++ +C  G    A  F +EM  +K   P +   ++++Q L  AG L+  +++V 
Sbjct: 460 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 519

Query: 147 KMIKQGFV 154
           KM+ +GFV
Sbjct: 520 KMVNRGFV 527



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V T+ IL+    KAG+  EA    + + + G KP    ++ +I  + ++ +  +A  FF 
Sbjct: 181 VETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFD 240

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            +K +   P+  VYT L+    R G   EA     EM   G+ P    + +V D L   G
Sbjct: 241 SLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSG 299

Query: 312 KHDLAEKI--ELLEV 324
           +   A  +  E+++V
Sbjct: 300 QITRAHDVFSEMIDV 314


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 132/272 (48%), Gaps = 1/272 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL-IRRMIRK 81
           +I   G+ G +++A+++F K  +  C   V+ YN+++ A+ E K      AL   +M   
Sbjct: 341 LINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKAN 400

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   TYAIL++ +C + ++ +A   L+EM +KGF P       L+  L  A   E+A
Sbjct: 401 GIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAA 460

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+     G +   V+++    KLG   DV TY  L+  
Sbjct: 461 NELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSG 520

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +AGMIDEA  L+ N+ E+G  P    +  I+ G+ + G    A   F++MK     P+
Sbjct: 521 MIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPD 580

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              Y  +++   R G F  AA  + EM   G 
Sbjct: 581 AVSYNTILSCLSRAGMFEMAAKLMREMKLKGF 612



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 43/361 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+TI+ M     SV P   S I++  GK  +V+ A+ VF +     C     +YN+L+ 
Sbjct: 143 MWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLIL 202

Query: 61  ------------------------------------ALCEVKLFHGAYALIRRMIRKGFV 84
                                               A  +++ +  A+ L   M   G  
Sbjct: 203 MLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLH 262

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P ++ Y  ++  +    K+  A   ++EM  KG  P V     L++GL   G ++ A  +
Sbjct: 263 PTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSL 322

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV-- 202
              M+K G   D+   N+LI  + ++G +E  ++++  +  L    +V TY  +I A+  
Sbjct: 323 FFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           SKA    EA      +  +G  P    YA +I G  +  + + A     EM  KG PP  
Sbjct: 383 SKAPA-SEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCP 441

Query: 263 PVYTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             Y  LI   GR  R+ EAAN L  E+ E      +R + ++     NCG+  L++ ++L
Sbjct: 442 AAYCSLIDSLGRAKRY-EAANELFQELKENCGRSSARVYAVMIKHFGNCGR--LSDAVDL 498

Query: 322 L 322
            
Sbjct: 499 F 499



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 131/311 (42%), Gaps = 1/311 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  + MK   L  + +  + I+  + K   V+ A+ +  +     C   V  Y  L+  
Sbjct: 250 FRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKG 309

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +V     AY+L   M++ G  PD      L+N    +G++ +A +   +M      P 
Sbjct: 310 LGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPN 369

Query: 122 VRGRDLLVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
           V   + +++ +  +    S A     KM   G      T+  LI+  CK+  VE  + + 
Sbjct: 370 VVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLL 429

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G     + Y  LI ++ +A   + A  L   L E+  +    +YA +IK     
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNC 489

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   F E +  G  P+   Y  L++   R G   EA + +  M E G TP  +  
Sbjct: 490 GRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSH 549

Query: 301 DLVTDGLKNCG 311
           +++ +GL   G
Sbjct: 550 NIILNGLAKTG 560



 Score = 81.3 bits (199), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 118/245 (48%), Gaps = 5/245 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W   E MK   ++ S  T +++I+ F K   V+ A+ +  +        C   Y SL+ 
Sbjct: 392 LW--FEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLID 449

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L   K +  A  L + +         R YA+++  + + G++ +A +   E    G +P
Sbjct: 450 SLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEXEKLGCSP 509

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + L+ G++ AG ++ A  ++  M + G   D+++ N ++  + K+G  +  +EM+
Sbjct: 510 DVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMF 569

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +  +  D  +Y  ++  +S+AGM + A +L+  +   G +     Y+ I++ +   
Sbjct: 570 TKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSITYSSILEAV--- 626

Query: 241 GQFDD 245
           G+ D+
Sbjct: 627 GKVDE 631



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 92/226 (40%), Gaps = 19/226 (8%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--SDKGFNPPVRGRDLLVQGLLNAGY 137
           R+ F  D  TY  L+     SG + E    +Q+M  S     P      L + G      
Sbjct: 117 RQHFQHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILG------ 170

Query: 138 LESAKQMVNKMIKQGFVLD-------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                +MVNK +   + +           +N+LI  +   G  E   E+Y  +C  G C+
Sbjct: 171 ---KAKMVNKALSVFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCS 227

Query: 191 -DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D  TY  LI A  K    D AFRL   + E+G  P   +Y  I+   F+  + + A   
Sbjct: 228 PDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRL 287

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             EMK KG  P    YT LI   G+ GR  +A +    M + G  P
Sbjct: 288 VEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKP 333


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+  N+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +    +Y  +I G+ + G+  DA     EM      
Sbjct: 325 BGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 118/264 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A      M+ KG VP+  T+  L++  C +G++  A+E  ++M  +   P +   
Sbjct: 226 SKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  +++ M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++    KP    Y  II    ++G    
Sbjct: 346 ENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHAPSVVTYNVLM 429



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E +  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     +M +KG  
Sbjct: 255 DGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVRLK 384



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + +MS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI  +C+ G      +M   +  + L  D  TY ++
Sbjct: 334 DSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
          Length = 327

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 138/306 (45%), Gaps = 2/306 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +S  T +++IE     G VD+ +++ ++      +  + ++N+++  +C   L   A+  
Sbjct: 23  ISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLVDRAFEF 82

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           IR +  KG+ PD  +Y+IL+    +  K  + ++ + +M  KG  P V    +L+  L  
Sbjct: 83  IRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSILISSLCR 142

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +E A  ++  M +QG   D  +++ LI   CK   V+  +E   S+   G   D+  
Sbjct: 143 DGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVN 202

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  ++  + K G  DEA ++   L E G  P  S Y  +   ++  G    A     EM 
Sbjct: 203 YNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALWSSGHKIRALGMILEML 262

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            K   P+   Y  LI+   R     +A   LV+M      P    +++V  GL     H 
Sbjct: 263 SKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKV--HR 320

Query: 315 LAEKIE 320
           +++ IE
Sbjct: 321 ISDAIE 326



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 88/175 (50%), Gaps = 2/175 (1%)

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++Q   + L T+  LIE     G V+  +++   + + GL  D+  +  ++  + + G++
Sbjct: 17  LQQTNPISLVTYTILIEATILKGGVDDVMKLLDEMIESGLRPDMFIFNAVVGGMCREGLV 76

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D AF  +  +   G+ P    Y+ +++G+  + +++D     S+M  KG  PN   Y++L
Sbjct: 77  DRAFEFIRYISAKGYAPDVISYSILLRGLLNQRKWEDGEKLMSDMLSKGCEPNVVTYSIL 136

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           I+   R G+  EA + L  M E GLTP +  +D +        + DLA  IE LE
Sbjct: 137 ISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLA--IEFLE 189



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 35/209 (16%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   L+    +   +I  F K   VD A+E      +  C   ++ YN++L  LC+
Sbjct: 153 LKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMISDGCLPDIVNYNTILSTLCK 212

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                                              +GK  EA +  +++ + G  P V  
Sbjct: 213 -----------------------------------NGKADEALKIFEKLGEVGCPPNVSS 237

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L   L ++G+   A  M+ +M+ +    D  T+NSLI  +C+   V+  +E+   + 
Sbjct: 238 YNTLFSALWSSGHKIRALGMILEMLSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDME 297

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                  V +Y I++  +SK   I +A  
Sbjct: 298 SSVYQPSVISYNIVLLGLSKVHRISDAIE 326


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 16/293 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K GL++ A   F++  +  C   V+ Y +LL A  + K    A  +  RM
Sbjct: 492 TYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRM 551

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--------SDKGFN--------PPV 122
           +  G  P+  TY+ LV+  C +G+ ++A E   +M        SD  F         P V
Sbjct: 552 VDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNV 611

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL  A  +  A+++++ M   G   +   +++LI+  CK G+++   E+++ 
Sbjct: 612 VTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFR 671

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K G    V TY  LI A+ K   +D A ++L  ++E    P    Y  +I G+ R G+
Sbjct: 672 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGE 731

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              A    S M+ +G  PN   YT LI   G+ G+   +     +M   G  P
Sbjct: 732 CQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAP 784



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 126/281 (44%), Gaps = 16/281 (5%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ ++  LCE      A+ L + M   G +PD  TY IL++++C  G + +A+ +  EM 
Sbjct: 458 YSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEME 517

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G +P V     L+   L    +  A  + ++M+  G   +  T+++L++ +CK+GE +
Sbjct: 518 SVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQ 577

Query: 175 FCVEMYYSVCKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              E+Y  +                    +  +V TY  LI  + KA  + +A  LL  +
Sbjct: 578 KACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVM 637

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
             +G +P   +Y  +I G  + G+ D+A   F  M   G+ P    YT LI    +  R 
Sbjct: 638 SSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRL 697

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             A   L +M E   TP    +  + DGL   G+   A K+
Sbjct: 698 DLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKL 738



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 137/280 (48%), Gaps = 4/280 (1%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S++P   T   +I+   K   V +A E+ +  ++  C+   ++Y++L+   C+V     A
Sbjct: 606 SIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNA 665

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +  RM + G++P   TY  L++A     ++  A + L +M +    P V     ++ G
Sbjct: 666 QEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDG 725

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G  + A ++++ M K+G   ++ T+ SLI+ + KSG+V+  ++++  +   G   +
Sbjct: 726 LCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPN 785

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY++LI     AG++DEA  LL  + +     +   Y  +++G  ++  F  +     
Sbjct: 786 YVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKK--FIASLGLLE 843

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           E++  G     PVY +LI    + GR  +A     EM E+
Sbjct: 844 ELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEV 883



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 112/232 (48%), Gaps = 5/232 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   + G    A+++ +      C   V+ Y SL+  L +      +  L  +M
Sbjct: 718 TYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQM 777

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P+  TY +L+N  C++G + EA   L EM    +   V+G   +VQG   +   
Sbjct: 778 ITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKF 835

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS---TY 195
            ++  ++ ++   G V     +  LI++  K+G +E  +E++  + ++    +++   TY
Sbjct: 836 IASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTY 895

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             LI A+  A  +++AF L   +   G  P  S +  +IKG+ +  ++++A 
Sbjct: 896 TSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEAL 947



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 14/254 (5%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            +L   ++  L E  LF  A + + RM     +P+  TY  L+  +    ++   +  + 
Sbjct: 274 TVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIIS 333

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M ++G NP     + LV    NA     A +++N+M   G       +N  I +IC   
Sbjct: 334 MMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGE 393

Query: 172 EV----------EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           E+          +   EM  S C L      +  + L       G  D+AF+++  ++  
Sbjct: 394 ELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLC----GMGKFDKAFQIIKLMMRK 449

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P  S Y+ +I  +    + + AF  F EMK  G  P+   YT+LI    + G   +A
Sbjct: 450 GFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQA 509

Query: 282 ANYLVEMTEMGLTP 295
            ++  EM  +G +P
Sbjct: 510 RSWFDEMESVGCSP 523



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 7/239 (2%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           AL EV  F        R++R+    D+    R   ++V   C  G   +A E L  + D 
Sbjct: 142 ALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDF 201

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+ P     + LVQ L  AG ++   ++  +M + GF  D  T     + +CK G     
Sbjct: 202 GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDA 261

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           + M   + +     D      +I  + +A + DEA   LH +  +   P    Y  ++ G
Sbjct: 262 LVM---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAG 318

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             ++ Q        S M  +G  PN  ++  L+        +  A   L  M   G  P
Sbjct: 319 FLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPP 377



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 82/206 (39%), Gaps = 9/206 (4%)

Query: 69  HGAYAL----IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           HGA+A     + R+   G+ P   TY  LV    ++G+M       +EMS+ GF      
Sbjct: 185 HGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFT 244

Query: 125 RDLLVQGLLNAGYLESAKQMVNKM-IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
                Q L   G    A  M+ +   K   VL  +  + L+E       + F   M  + 
Sbjct: 245 VGCFAQALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNS 304

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           C      +V TY+ L+    K   +    R++  ++ +G  P PSL+  ++        +
Sbjct: 305 C----IPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDY 360

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLI 269
             A+   + M   G PP   VY + I
Sbjct: 361 PYAYKLLNRMAGCGCPPGYVVYNIFI 386



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 4/110 (3%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFH 69
           +S++P    L+I+ F K G ++ A+E+  +    +    +     Y SL+ ALC      
Sbjct: 851 VSIAP-VYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLE 909

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            A+ L   + RKG VP+   +  L+       K  EA +    M D+G N
Sbjct: 910 KAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGVN 959


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 127/269 (47%), Gaps = 2/269 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+     +     A  L   M  KG   D   Y  +++  C SG ++ A     
Sbjct: 299 VVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFD 358

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM+DKG  P       L+ G+  AG +E+A+ +VN+M  +G  L+   FN+LI+  C+SG
Sbjct: 359 EMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESG 418

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+  + +   + K GL +DV  Y  +   + K    DEA  LL ++VE G  P    + 
Sbjct: 419 MVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 478

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    + G F +A   F EM+ KG+ PN   Y +LI    + G   EA     E+   
Sbjct: 479 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 538

Query: 292 GLTP-ISRCFDLVTDGLKNCGKHDLAEKI 319
           GL P +  C  L+  G    GK D+A K+
Sbjct: 539 GLIPDVYTCTSLI-HGECIDGKVDMALKL 566



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 137/328 (41%), Gaps = 39/328 (11%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+   ++ +  T +L+I  F   G ++ A  +F +      +  V +Y S++   C 
Sbjct: 287 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 346

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--FNPPV 122
                 A  L   M  KG +P   TY  L++  C +G+M  AQ  + EM  KG   NP +
Sbjct: 347 SGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI 406

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G   +G ++ A ++   M K+G   D+  +NS+   +CK    +    + +S
Sbjct: 407 --FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFS 464

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-- 240
           + + G+  +  ++  LI    K G   EA R+   + E G+ P    Y  +I G  +R  
Sbjct: 465 MVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGN 524

Query: 241 ---------------------------------GQFDDAFCFFSEMKIKGHPPNRPVYTM 267
                                            G+ D A   F EM  +G  PN   YT 
Sbjct: 525 MKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTA 584

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +I+   + GR  EA     EM E GLTP
Sbjct: 585 MISGLSKDGRSEEAFKLYDEMKETGLTP 612



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 119/227 (52%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + ++P   + +I+ + + G+VD A+ +         +  V  YNS+   LC++  
Sbjct: 395 MQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNR 454

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+ +G  P+  ++  L++ +C  G   EA+   +EM +KG  P +   ++
Sbjct: 455 KDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNV 514

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G ++ A ++ +++  +G + D+ T  SLI   C  G+V+  ++++  + + G
Sbjct: 515 LIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRG 574

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
           L  +V TY  +I  +SK G  +EAF+L   + E G  P  ++Y+ ++
Sbjct: 575 LVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 148/313 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   ++ V+  +L+++++   K G V+   ++ ++  A   +  V+ YN+ +    +   
Sbjct: 220 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 279

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
             G   ++  M ++G   +  TY +L++ + + GK+ EAQ   +EM +KG    V     
Sbjct: 280 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 339

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++     +G ++ A  + ++M  +G +    T+ +LI  +CK+G++E    +   +   G
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +   +  LI    ++GM+DEA RL   + + G +     Y  I  G+ +  + D+A 
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                M  +G  PN   +T LI +  + G FVEA     EM E G  P    ++++ DG 
Sbjct: 460 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGY 519

Query: 308 KNCGKHDLAEKIE 320
              G    A K++
Sbjct: 520 SKRGNMKEAHKLK 532



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 132/295 (44%), Gaps = 11/295 (3%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVL---LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           LVD+A      C    C +       ++ L     + K+F  A      M +KGF  D+R
Sbjct: 142 LVDDA------CNESKCNRAKFKEKFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDER 195

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           +  + + A    G++     F + M +      V    +++ GL   G +E  +++++++
Sbjct: 196 SCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEV 255

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   ++ T+N+ IE   K  ++    E+   + K G+  +V TY +LI   S  G I
Sbjct: 256 AAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKI 315

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA RL   + E G +    +Y  II    R G    A   F EM  KG  P+   Y  L
Sbjct: 316 EEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGAL 375

Query: 269 ITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           I    + G+ +EAA  LV EM   G+      F+ + DG    G  D A +++++
Sbjct: 376 IHGVCKAGQ-MEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVV 429



 Score = 74.7 bits (182), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 103/242 (42%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           RRM+         +  I+++  C  G +   ++ + E++ KG    V   +  ++G    
Sbjct: 218 RRMVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKR 277

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L    +++  M K+G   ++ T+  LI      G++E    ++  + + G+ ADV  Y
Sbjct: 278 LDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVY 337

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    ++G +  A  L   + + G  P    Y  +I G+ + GQ + A    +EM+ 
Sbjct: 338 TSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQG 397

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG   N  ++  LI      G   EA    V M + GL      ++ +  GL    + D 
Sbjct: 398 KGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDE 457

Query: 316 AE 317
           A+
Sbjct: 458 AK 459



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 78/151 (51%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + +L+   C+   F  A  + R M  KG VP+  TY +L++ +   G M+EA +   E+ 
Sbjct: 477 FTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELE 536

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++G  P V     L+ G    G ++ A ++ ++M ++G V ++ T+ ++I  + K G  E
Sbjct: 537 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 596

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
              ++Y  + + GL  D + Y  L+ ++  A
Sbjct: 597 EAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 627



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 2/160 (1%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP T+S   +I+ + K G    A  VF +         ++ YN L+    +      A+
Sbjct: 470 VSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAH 529

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   +  +G +PD  T   L++  C  GK+  A +   EM  +G  P V     ++ GL
Sbjct: 530 KLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGL 589

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
              G  E A ++ ++M + G   D   ++SL+ ++  + E
Sbjct: 590 SKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSLHSADE 629


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  118 bits (295), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 140/310 (45%), Gaps = 6/310 (1%)

Query: 11  YNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y + V P  Q  +++++   K G  D   +V+    A      V+ Y +L+   C    F
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDF 209

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ L   MI K   P    Y IL+   C   ++ EA+   + M + G  P +   + +
Sbjct: 210 LKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTM 269

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G     +++ A ++  +M+  G + ++ TF  LI+ +CK+ E+    +    +   G+
Sbjct: 270 MDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGV 329

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDA 246
             ++  Y  LI    KAG + EA   LH+ +E  H+  P +  Y+ +IKG+    + ++A
Sbjct: 330 VPNIFVYNCLIDGYCKAGNLSEALS-LHSEIEK-HEILPDVFTYSILIKGLCGVDRMEEA 387

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                EMK KG  PN   Y  LI    + G   +A     +MTE G+ P    F  + DG
Sbjct: 388 DGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG 447

Query: 307 LKNCGKHDLA 316
               GK + A
Sbjct: 448 YCKAGKMEAA 457



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 134/306 (43%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MWK    M     S +  T   +I+   + G    A  +F++         V++Y  L+ 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR 236

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A ++ R M   G +P+  TY  +++ +C    +++A E  QEM   G  P
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLP 296

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+ GL     + SA++ +  M   G V ++  +N LI+  CK+G +   + ++
Sbjct: 297 NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLH 356

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  DV TY ILI  +     ++EA  LL  + + G  P    Y  +I G  + 
Sbjct: 357 SEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKE 416

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  + A    S+M  KG  PN   ++ LI    + G+   A     EM   GL P    +
Sbjct: 417 GNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476

Query: 301 DLVTDG 306
             + DG
Sbjct: 477 TALIDG 482



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 129/267 (48%), Gaps = 2/267 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+++   C++     A  L + M+  G +P+  T+ IL++  C + +M  A++FL +M+
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   + L+ G   AG L  A  + +++ K   + D+ T++ LI+ +C    +E
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + K G   +  TY  LI    K G +++A  +   + E G +P    ++ +I
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  + G+ + A   ++EM IKG  P+   YT LI    + G   EA     EM E GL 
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLH 505

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIEL 321
           P       + DGL  C    +++ I+L
Sbjct: 506 PNVFTLSCLIDGL--CKDGRISDAIKL 530



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 7/307 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P    ++I  F + GLV+ A+ V+ K       Q     N +L  L +   F   + + 
Sbjct: 125 TPNVFGVLIIAFSEMGLVEEALWVYYKMDVLPAMQAC---NMVLDGLVKKGRFDTMWKVY 181

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +G  P+  TY  L++  C  G   +A     EM +K   P V    +L++GL   
Sbjct: 182 GDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGE 241

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             +  A+ M   M   G + +L T+N++++  CK   V+  +E+Y  +   GL  +V T+
Sbjct: 242 SRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI  + K   +  A + L ++   G  P   +Y  +I G  + G   +A    SE++ 
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               P+   Y++LI  +CG   R  EA   L EM + G  P +  ++ + DG   C + +
Sbjct: 362 HEILPDVFTYSILIKGLCGV-DRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY--CKEGN 418

Query: 315 LAEKIEL 321
           + + IE+
Sbjct: 419 MEKAIEV 425



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/276 (26%), Positives = 126/276 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + K   V  A+E++ +         V+ +  L+  LC+      A   +  M
Sbjct: 265 TYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP+   Y  L++ +C +G + EA     E+      P V    +L++GL     +
Sbjct: 325 ASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRM 384

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ +M K+GF+ +  T+N+LI+  CK G +E  +E+   + + G+  ++ T+  L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KAG ++ A  L   +V  G  P    Y  +I G F+ G   +AF    EM+  G 
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            PN    + LI    + GR  +A    +  T    T
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTT 540



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 120/291 (41%), Gaps = 30/291 (10%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIR-----------------------KGFVPDKRTY 90
           LY++++  L   KL+  A  L+R +I+                         F P+   +
Sbjct: 72  LYSAIIHVLTGAKLYAKARCLMRDLIQCLQNSRRSRICCSVFNVLSRLESSKFTPN--VF 129

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            +L+ A+   G + EA     +M      P ++  ++++ GL+  G  ++  ++   M+ 
Sbjct: 130 GVLIIAFSEMGLVEEALWVYYKMD---VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVA 186

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   ++ T+ +LI+  C+ G+      ++  + +  +   V  Y ILI  +     I E
Sbjct: 187 RGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISE 246

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  +   +   G  P    Y  ++ G  +      A   + EM   G  PN   + +LI 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              +    V A  +L++M   G+ P    ++ + DG   C   +L+E + L
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY--CKAGNLSEALSL 355



 Score = 45.1 bits (105), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 84  VPDKR--TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           +P K   ++  +++A+  + +  +A +  ++M      P +    + +    + G L+  
Sbjct: 692 IPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMG 751

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           + +   +  +G   DL   NSLI    K GE+            L L  DV+   +L+ A
Sbjct: 752 EWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRF-----SLVLPNDVTFMGVLM-A 805

Query: 202 VSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            S AG+++E  +   ++ ED   +P  S +  ++  + R G   +A+ F  +M ++   P
Sbjct: 806 CSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKMPVR---P 862

Query: 261 NRPVYTMLITMCGRGGRF 278
           N  V+  L+  C   G +
Sbjct: 863 NAVVWRTLLGACSLQGMW 880


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 6/287 (2%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           ++ V+P   T + +I      G V +A+ + +      CQ  V+ Y  LL A+C+   F 
Sbjct: 135 SMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFE 194

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A A++  M  KG  P+  TY +++N  C  G++ +A++ L  +   G  P       L+
Sbjct: 195 QAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLL 254

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL  +   +  +++  +M+++  + +  TF+ LI   C+ G VE  +++   + +    
Sbjct: 255 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECA 314

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            + +   I+I ++ K G +D+AF+ L+N+   G  P    Y  ++KG+ R  +++DA   
Sbjct: 315 TNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKEL 374

Query: 250 FSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVE-MTEMGLT 294
             EM     PPN   + T +  +C +G   +E A  L+E M E G T
Sbjct: 375 LKEMVRNNCPPNEVTFNTFICILCQKG--LIEQAIMLIEQMQEHGCT 419



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 3/265 (1%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + GL++ A+ +  +     C   V+ YN+L+   C       A  L R M  K   P+  
Sbjct: 399 QKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTI 455

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L+   C++ ++  A E + EM  +   P V   ++LV      G+L+ A ++V +M
Sbjct: 456 TYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQM 515

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   +L T+N+L + I K    E  +E+ + +   G+  DV T+  +I  +SK   +
Sbjct: 516 MEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRV 575

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA ++ H   + G +P   +Y  I+ G+ +R + D+A  F + M   G  PN   Y +L
Sbjct: 576 EEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIIL 635

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGL 293
           I    R G   EA + L  +   G+
Sbjct: 636 IEGLAREGLLKEAQDLLSMLCSRGV 660



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 118/247 (47%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+  LC+      A +L+  M+R+G  P+  TY +L+ A C +    +A   L EM 
Sbjct: 145 YTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMR 204

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P +   ++++ G+   G ++ A+ ++N++   G   D  ++ +L++ +C S   +
Sbjct: 205 AKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWD 264

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  + +     +  T+ +LI    + GM++ A ++L  + E       +L   +I
Sbjct: 265 DVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVI 324

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + ++G+ DDAF F + M   G  P+   YT ++    R  R+ +A   L EM      
Sbjct: 325 NSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCP 384

Query: 295 PISRCFD 301
           P    F+
Sbjct: 385 PNEVTFN 391



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/320 (20%), Positives = 146/320 (45%), Gaps = 5/320 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M  +  + +    +++I    K G VD+A +  N   ++ C    + Y ++L  L
Sbjct: 303 QVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGL 362

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + ++ A  L++ M+R    P++ T+   +   C  G + +A   +++M + G    V
Sbjct: 363 CRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGV 422

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV G    G+++SA ++   M  +   +   T+ +L+  +C +  ++   E+   
Sbjct: 423 VTYNALVNGFCVQGHIDSALELFRSMPCKPNTI---TYTTLLTGLCNAERLDAAAELVAE 479

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +       +V T+ +L+    + G +DEA  L+  ++E G  P    Y  +  G+ +   
Sbjct: 480 MLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCS 539

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            +DA      +  KG  P+   ++ +I +  +  R  EA        ++G+ P +  ++ 
Sbjct: 540 SEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNK 599

Query: 303 VTDGLKNCGKHDLAEKIELL 322
           +  GL  C +H++   I+ L
Sbjct: 600 ILLGL--CKRHEIDNAIDFL 617



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 136/340 (40%), Gaps = 40/340 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++E   K+   + A+ V ++  A  C   ++ YN ++  +C       A  L+ R+
Sbjct: 179 TYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRL 238

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  +Y  L+   C+S +  + +E   EM +K   P     D+L++     G +
Sbjct: 239 FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMV 298

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A Q++ +M +     +    N +I +ICK G V+   +   ++   G   D  +Y  +
Sbjct: 299 ERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTV 358

Query: 199 IPAVSKA-----------------------------------GMIDEAFRLLHNLVEDGH 223
           +  + +A                                   G+I++A  L+  + E G 
Sbjct: 359 LKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGC 418

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  ++ G   +G  D A   F  M  K   PN   YT L+T      R   AA 
Sbjct: 419 TVGVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAE 475

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            + EM      P    F+++ +    C K  L E IEL+E
Sbjct: 476 LVAEMLHRDCPPNVVTFNVLVNFF--CQKGFLDEAIELVE 513



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 118/267 (44%), Gaps = 3/267 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L   L+  LC       A  ++R     G   D   Y  LV  +C  G +  A+  + 
Sbjct: 75  VYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIG 134

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P       L++ L + G +  A  +++ M+++G   ++ T+  L+E +CK+ 
Sbjct: 135 SMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNS 191

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E  + +   +   G   ++ TY ++I  + + G +D+A  LL+ L   G +P    Y 
Sbjct: 192 GFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYT 251

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++KG+    ++DD    F+EM  K   PN   + MLI    RGG    A   L +MTE 
Sbjct: 252 TLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEH 311

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEK 318
                +   ++V + +   G+ D A K
Sbjct: 312 ECATNTTLCNIVINSICKQGRVDDAFK 338



 Score = 54.7 bits (130), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 77/170 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F + G +D A+E+  +     C   ++ YN+L   + +      A  L+  +
Sbjct: 491 TFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGL 550

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  T++ ++       ++ EA +      D G  P     + ++ GL     +
Sbjct: 551 VSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEI 610

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++A   +  M+  G + +  T+  LIE + + G ++   ++   +C  G+
Sbjct: 611 DNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 39/351 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M       S  T + +I+   K G +D A  +  K     C   V+ Y +L+  LC+ + 
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP------- 120
            H A   ++RM+R G  PD  TY  L++  C + +M +A   LQE+   GF P       
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 121 ------------PVRG--RDLLVQGLLNA---------GYLESAKQMV-------NKMIK 150
                         RG  R+++++G +           G+ E+  Q         ++MI+
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIE 180

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G + D+ T+N+ I  +CK+G+++  +EM   + + G+  DV T+  +I  + KA  ID+
Sbjct: 181 SGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDD 240

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT--ML 268
           AF++   ++E G  P    Y+ ++  + R  + D        M+         VYT    
Sbjct: 241 AFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAF 300

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    R G+F  A N L+ M E G  P    ++ V DGL   G  D A K+
Sbjct: 301 IGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKL 351



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 133/305 (43%), Gaps = 4/305 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +  I    K G +D  +E+  +         V+ + S++  LC+      A+ + + M
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS--DKGFNPPVRGRDLLVQGLLNAG 136
           + +G VPD  TY+I+++    + ++    E L+ M     G    V   +  +  L  +G
Sbjct: 249 LERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSG 308

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTY 195
               AK ++  MI+ G + +L ++N +I+ +CKSG V+   ++   +   G C  DV  +
Sbjct: 309 KFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFF 368

Query: 196 KILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
             LI    KAG + +A +LL  +  ++   P    Y  +I G  + G    A     EM+
Sbjct: 369 NTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQ 428

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             G  PN   Y  LI    + G + EA +   EM+  G  P    ++ V       G   
Sbjct: 429 AVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMS 488

Query: 315 LAEKI 319
            AE +
Sbjct: 489 KAEGV 493



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 127/272 (46%), Gaps = 4/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN+ +  LC+         ++  M R G  PD  T+  +++  C + ++ +A +  +
Sbjct: 187 VVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFK 246

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM--IKQGFVLDLETFNSLIETICK 169
            M ++G  P      +++  L  A  L++  +++  M  +K G V+++ T N+ I  +C+
Sbjct: 247 GMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCR 306

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HKPFPS 228
           SG+      +   + + G   ++ +Y  +I  + K+G +D+A++L   +++ G  KP   
Sbjct: 307 SGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVI 366

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            +  +I G  + G+   A     EMK K    P+   Y  LI    + G   +A   L E
Sbjct: 367 FFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQE 426

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           M  +G  P    +  + +G    G ++ AE +
Sbjct: 427 MQAVGCKPNVVTYAALINGYAKHGMYEEAESL 458



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIR 76
           T S++++   +   +D   EV     A    C   V  +N+ + ALC    F  A  ++ 
Sbjct: 259 TYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILL 318

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNA 135
            MI  G +P+  +Y  +++  C SG + +A +  ++M D G   P V   + L+ G   A
Sbjct: 319 GMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKA 378

Query: 136 GYLESAKQMVNKMIKQGF-VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           G L  A Q++ +M  +   V D+ T+N+LI+   K G ++    +   +  +G   +V T
Sbjct: 379 GRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVT 438

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI   +K GM +EA  L   +   G  P    Y  ++    + G    A   + ++K
Sbjct: 439 YAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLK 498

Query: 255 IKGH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            K     P+   Y +LI    R     +    L EMT  G +  S  ++++
Sbjct: 499 NKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVL 549



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 7/283 (2%)

Query: 17  PQTLS--LIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           P  LS   +I+   K G VD+A ++  K   +  C+  V+ +N+L+   C+      A+ 
Sbjct: 327 PNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQ 386

Query: 74  LIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           L+  M  K   VPD  TY  L++     G +++A+  LQEM   G  P V     L+ G 
Sbjct: 387 LLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGY 446

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV-CKLGLCA- 190
              G  E A+ + ++M  +G   D+ T+N+++    K+G +     +Y  +  K   C+ 
Sbjct: 447 AKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSP 506

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF-DDAFCF 249
           D  TY+ILI    +A   ++   LL  +   G       Y  +I  +    +    A   
Sbjct: 507 DAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAV 566

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           + +M  +   P+  ++  L+ +  R G    A + + EM E G
Sbjct: 567 YQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKG 609



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 8/215 (3%)

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M+  G++  V     L+ GL  +G L++A+ ++ KM   G   ++ T+ +LI+ +CK+  
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
               ++    + + G   D+ TY  LI  +  A  +D+A  +L  LV +G  P    Y+ 
Sbjct: 61  PHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYST 120

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV----EM 288
           ++    RR + D A     EM ++G   N  VY   I   G      +++ Y      EM
Sbjct: 121 LVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIF--GFCEARCQSSRYECRDGDEM 178

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            E G  P    ++    GL   GK D  + +E+LE
Sbjct: 179 IESGRIPDVVTYNTFISGLCKAGKLD--KGLEMLE 211



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 3/183 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + KHG+ + A  +F++ +A  C   ++ YN++L A  +  +   A  + +++
Sbjct: 438 TYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQL 497

Query: 79  IRKGFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
             K     PD  TY IL++ +C +    +    LQEM+ +G++      ++L+  L    
Sbjct: 498 KNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETE 557

Query: 137 YLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
            + S A  +  +M+ Q  V     FNSL+    ++G+V     M   + + G   D S  
Sbjct: 558 EVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVDASNL 617

Query: 196 KIL 198
           + L
Sbjct: 618 EAL 620


>gi|242036455|ref|XP_002465622.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
 gi|241919476|gb|EER92620.1| hypothetical protein SORBIDRAFT_01g042420 [Sorghum bicolor]
          Length = 817

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 12/310 (3%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I E      +D A E+FN+    + +     YNSL + +C  K    A  L+R M    
Sbjct: 478 LILELCNSDRLDEAYEIFNQMKDLDLKPSEFTYNSLFYGICRRKDTSAAADLLREMRTSS 537

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P  +    +V   C SG++ EA +FL EM   GF P +      + G+   G  E+A 
Sbjct: 538 HKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDIVTYSAAMNGMCKIGETENAL 597

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +   +  + ++ D+   N LI    K+G+ +   E+   +   GL   V TY ++I   
Sbjct: 598 GLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEMLSKGLFPSVVTYNLMIDIW 657

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K+G ID+A   ++ ++++   P    Y  ++ G+   G+ D+A   + +M  KG  PN 
Sbjct: 658 CKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPNE 717

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE----- 317
             YT  I    + GR   A NY  EM        ++CFDL    L N     +A+     
Sbjct: 718 IAYTAFINGLCKCGRTETAVNYYEEMK-------TKCFDLDIFSLLNLTNSLIAQGQASK 770

Query: 318 KIELLEVSLR 327
             ELL+V L+
Sbjct: 771 GCELLKVVLQ 780



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 126/284 (44%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+ +        C+  +L++N L+  LC       AY +  +M      P + TY  
Sbjct: 453 LDLALALTKDMVGLGCKGKLLMFNDLILELCNSDRLDEAYEIFNQMKDLDLKPSEFTYNS 512

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L    C       A + L+EM      P ++    +VQ L  +G +  A Q +++M+K G
Sbjct: 513 LFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLG 572

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F+ D+ T+++ +  +CK GE E  + ++  +       DV  + ILI    KAG  DEA 
Sbjct: 573 FLPDIVTYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQ 632

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            ++  ++  G  P    Y  +I    + G+ D A     +M  +  PP    YT L+   
Sbjct: 633 EIMEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGL 692

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              GR  EA     +M+E G +P    +    +GL  CG+ + A
Sbjct: 693 CNAGRPDEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRTETA 736



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 145/333 (43%), Gaps = 22/333 (6%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M+   +  S +TL++++  F + G VD A+++F+K  ++     + +Y+ L+  LC+
Sbjct: 265 IGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVDLAMYSVLIEGLCD 324

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP--PV 122
                 A  L   M R    PD R    ++ A+C  G       F+ E +     P   V
Sbjct: 325 GNEMGKAVKLYEDMKRDRVTPDVRLLKKMIEAFCRQGDFSTVGPFINENAVH-LKPGSAV 383

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQG-------------------FVLDLETFNSL 163
              +++++GL N G +E+A Q+++ M++ G                      + ++FN +
Sbjct: 384 LLYNVILEGLTNHGEVEAASQLLSSMVRGGQRGSDDDTVGVHIVVISEDVKPNSDSFNIV 443

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +  +CK  +++  + +   +  LG    +  +  LI  +  +  +DEA+ + + + +   
Sbjct: 444 VCGLCKVKKLDLALALTKDMVGLGCKGKLLMFNDLILELCNSDRLDEAYEIFNQMKDLDL 503

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +  G+ RR     A     EM+   H P     T ++      GR  EA  
Sbjct: 504 KPSEFTYNSLFYGICRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQ 563

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +L EM ++G  P    +    +G+   G+ + A
Sbjct: 564 FLDEMLKLGFLPDIVTYSAAMNGMCKIGETENA 596



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 132/304 (43%), Gaps = 1/304 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +  + Q LS ++   G+ G  D+ V V     + + +     +N ++  LC+VK    A 
Sbjct: 399 VEAASQLLSSMVRG-GQRGSDDDTVGVHIVVISEDVKPNSDSFNIVVCGLCKVKKLDLAL 457

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL + M+  G       +  L+   C+S ++ EA E   +M D    P     + L  G+
Sbjct: 458 ALTKDMVGLGCKGKLLMFNDLILELCNSDRLDEAYEIFNQMKDLDLKPSEFTYNSLFYGI 517

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                  +A  ++ +M        ++    +++ +C SG +   ++    + KLG   D+
Sbjct: 518 CRRKDTSAAADLLREMRTSSHKPWIKNCTEMVQQLCFSGRITEALQFLDEMLKLGFLPDI 577

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY   +  + K G  + A  L  ++    + P    +  +I G  + G+FD+A     E
Sbjct: 578 VTYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEE 637

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y ++I +  + G+  +A + + +M +    P    +  + DGL N G+
Sbjct: 638 MLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCNAGR 697

Query: 313 HDLA 316
            D A
Sbjct: 698 PDEA 701



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 134/341 (39%), Gaps = 54/341 (15%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +++P  L  ++   G  GL D A  VF+   T  +C      YN LL AL +      A 
Sbjct: 132 AMTPGALGFLLRRLGAAGLPDTAARVFDAARTTLSCAPNSYTYNCLLDALAKAGRAEDAE 191

Query: 73  ALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-------------- 116
           A ++ M+        D+ T   L+N +C++G+  +A   LQ MS++              
Sbjct: 192 ARLQEMVASCGEESVDRYTLTSLLNCYCNAGRPEDASAVLQRMSERAWVDEHVLTMLAVA 251

Query: 117 --------------------GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
                               G  P  +   +LV G    G ++ A  M +KM   GF +D
Sbjct: 252 FSKWGKVEDAVELIGRMEALGMQPSEKTLTVLVHGFARQGRVDVAMDMFDKMASYGFSVD 311

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  ++ LIE +C   E+   V++Y  + +  +  DV   K +I A  + G        ++
Sbjct: 312 LAMYSVLIEGLCDGNEMGKAVKLYEDMKRDRVTPDVRLLKKMIEAFCRQGDFSTVGPFIN 371

Query: 217 -NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            N V         LY  I++G+   G+ + A    S M   G                RG
Sbjct: 372 ENAVHLKPGSAVLLYNVILEGLTNHGEVEAASQLLSSMVRGGQ---------------RG 416

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                   ++V ++E  + P S  F++V  GL    K DLA
Sbjct: 417 SDDDTVGVHIVVISE-DVKPNSDSFNIVVCGLCKVKKLDLA 456



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 2/180 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S  +    K G  +NA+ +F   ++      V+ +N L+    +   F  A  ++  M
Sbjct: 579 TYSAAMNGMCKIGETENALGLFRDISSKCYLPDVVAHNILINGFRKAGKFDEAQEIMEEM 638

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY ++++ WC SGK+ +A   + +M D+   P V     L+ GL NAG  
Sbjct: 639 LSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCNAGRP 698

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  KM ++G   +   + + I  +CK G  E  V  YY   K   C D+  + +L
Sbjct: 699 DEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRTETAVN-YYEEMKTK-CFDLDIFSLL 756



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 72/159 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F K G  D A E+  +  +      V+ YN ++   C+      A + + +MI 
Sbjct: 616 NILINGFRKAGKFDEAQEIMEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMID 675

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   P   TY  L++  C++G+  EA     +MS+KG +P        + GL   G  E+
Sbjct: 676 EEKPPTVVTYTSLLDGLCNAGRPDEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRTET 735

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           A     +M  + F LD+ +  +L  ++   G+     E+
Sbjct: 736 AVNYYEEMKTKCFDLDIFSLLNLTNSLIAQGQASKGCEL 774



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 61/148 (41%), Gaps = 16/148 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L  S  T +L+I+ + K G +D A+    K         V+ Y SLL  LC 
Sbjct: 635 MEEMLSKGLFPSVVTYNLMIDIWCKSGKIDKAISCVYKMIDEEKPPTVVTYTSLLDGLCN 694

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L  +M  KG  P++  Y   +N  C  G+   A  + +EM  K F      
Sbjct: 695 AGRPDEAIILWCKMSEKGCSPNEIAYTAFINGLCKCGRTETAVNYYEEMKTKCF------ 748

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            DL +  LLN         + N +I QG
Sbjct: 749 -DLDIFSLLN---------LTNSLIAQG 766


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A +   EM  K   P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ K  VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 NKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 49/345 (14%)

Query: 20  LSLIIEEFGKHGLVDNAVEVF-----NK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
            S +I  + + G + +A+E +     NK C  F+  + VL +      L ++K F   + 
Sbjct: 75  FSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEH------LMKLKYFKLVWG 128

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
               ++  G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +
Sbjct: 129 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 188

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI-------------------------- 167
             G L+   ++ + M+  G   D+ T++ LI  +                          
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGV 248

Query: 168 ---------CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
                    CK+G V+  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +
Sbjct: 249 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEM 308

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G +P    Y  +I G  + G  D AF     M  +    +   YT LI+   + GR 
Sbjct: 309 SMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 368

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           V+A   L EM  +GL P +R + ++ +    C K D+ +  +LL+
Sbjct: 369 VDAEKMLREMLSVGLKPDARTYTMIINEF--CKKGDVWKGSKLLK 411



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A ++F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 41.6 bits (96), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 76/208 (36%), Gaps = 37/208 (17%)

Query: 156 DLETFNSLIETICKSGEVEFCVEMY-----------YSVCK------------------- 185
           D+  F+ LI    +SG +   +E Y           +  C+                   
Sbjct: 71  DIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFY 130

Query: 186 -----LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
                 G  A +  + IL+    K G I  A  +   + + G +P    Y  ++ G  R 
Sbjct: 131 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 190

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D+ F   S M   G  P+   Y++LI    +  +  +A     EM    L P    F
Sbjct: 191 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 301 DLVTDGLKNCGKHDLAEKI--ELLEVSL 326
             + DG    G+ DLA +I  ++L  SL
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSL 278


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 128/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+            + L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXML 185

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G  + G+  DA     EM   G  
Sbjct: 306 NGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G     +  L EM   G  P    ++++ +G
Sbjct: 366 PDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 118/265 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 147 DAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKE 206

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 207 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 266

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI   CK G+++   E    + +
Sbjct: 267 NTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQ 326

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI    + G   +A ++L  ++  G KP    Y  II    + G    
Sbjct: 327 ENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWX 386

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
                 EM+  GH P+   Y +L+ 
Sbjct: 387 GSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+    + + M+  G   D+ T++ LI  +CK  +++   
Sbjct: 154 LRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDAN 213

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL  +  T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 214 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 273

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 274 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDE 333

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  G    G+   AEK+  E+L V L+
Sbjct: 334 VAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 2/239 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 51  SDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 110

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 111 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 170

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE F L   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   
Sbjct: 171 XGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVT 230

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 231 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 287



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 98/218 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDL 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI   C+ G      +M   +  +GL  D  TY ++
Sbjct: 315 DSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMI 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G +    +LL  +  DGH P    Y  ++ G
Sbjct: 375 INEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 131/289 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++++  +   G + +  ++F+          +  +N L+ A     +   A  +   M
Sbjct: 361 SYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY  ++ A C  GKM +A E   +M D+G  P       L+QG    G L
Sbjct: 421 RDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSL 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+++++++  G  LD+  F+S+I  +CK G V     ++     +GL      Y +L
Sbjct: 481 LKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSML 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G +++A R+   +V  G +P   +Y  ++ G  + G+ D+    F EM  KG 
Sbjct: 541 MDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGI 600

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+  +Y ++I      GR V A     EMTE G+      + +V  GL
Sbjct: 601 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 649



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 143/296 (48%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 196 GKSGQADDLLRMMAEGGAV-CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDF 254

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ +V+A C +  M +A+ FL++M +KG  P     + L+ G  + G  + A ++  +
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +Q  + D+ TFN L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 315 MRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  PN   YT 
Sbjct: 375 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTT 434

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    +  +  G   C    L +  EL+ 
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF--CTHGSLLKAKELIS 488



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 153/313 (48%), Gaps = 2/313 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +          + Y+S++ ALC+ +    A A
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEA 275

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ KG +P+  TY  L+  + S+G+ +EA    +EM  +   P V   ++L+  L 
Sbjct: 276 FLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLC 335

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++N ++      G +    +++  +   G+   + 
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 395

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P++  Y  LI      G  ++A   + E+   G+      F  + + L   G+ 
Sbjct: 456 IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRV 515

Query: 314 DLAEKIELLEVSL 326
             A+ I  L V++
Sbjct: 516 MDAQNIFDLTVNV 528



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 125/294 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K+G +  A +VF+          V  YN +L              L   M
Sbjct: 326 TFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLM 385

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P   T+ +L+ A+ + G + +A     EM D G  P V     ++  L   G +
Sbjct: 386 LGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKM 445

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +  N+MI QG   D   ++ LI+  C  G +    E+   +   G+  D+  +  +
Sbjct: 446 DDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSI 505

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + +A  +    V  G  P   +Y+ ++ G    G+ + A   F  M   G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN  VY  L+    + GR  E  +   EM + G+ P +  ++++ DGL   G+
Sbjct: 566 EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGR 619



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 104 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTD 163

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V   +
Sbjct: 164 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYN 223

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   D  T++S++  +CK+  ++        +   
Sbjct: 224 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK 283

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  +  TY  LI   S  G   EA R+   +      P    +  ++  + + G+  +A
Sbjct: 284 GVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEA 343

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   Y +++      G  V+  +    M   G+ P+   F+++   
Sbjct: 344 RDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 403

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 404 YANCGMLDKA 413



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 118/271 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G V +A  +F+           ++Y+ L+   C V     A  +   M+
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMV 561

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  KG  P     ++++ GL  AG   
Sbjct: 562 SAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTV 621

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  ++  T++ ++  + K+   +  + ++  +  + +  D+ T   +I
Sbjct: 622 PAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 681

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + +   ++EA  L  ++   G  P    Y+ +I  + + G  ++A   FS M+  G  
Sbjct: 682 AGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCE 741

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           P+  +   ++    +    V A  YL ++ E
Sbjct: 742 PDSRLLNHVVRELLKKNEIVRAGAYLSKIDE 772



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 136/355 (38%), Gaps = 70/355 (19%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ +   G++D A+ +FN+      +  VL Y +++ ALC +     A     +M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQM 455

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--------------------- 117
           I +G  PDK  Y  L+  +C+ G + +A+E + E+ + G                     
Sbjct: 456 IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRV 515

Query: 118 --------------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                          +P      +L+ G    G +E A ++ + M+  G   +   + +L
Sbjct: 516 MDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTL 575

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           +   CK G ++  + ++  + + G+      Y I+I  + +AG    A    H + E G 
Sbjct: 576 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635

Query: 224 KPFPSLYAPIIKG-----------------------------------MFRRGQFDDAFC 248
                 Y+ +++G                                   MF+  + ++A  
Sbjct: 636 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKD 695

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            F+ +   G  P    Y+++IT   + G   EA +    M   G  P SR  + V
Sbjct: 696 LFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHV 750



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++++  T S+++    K+   D A+ +F +  A N +  ++  N+++  + + + 
Sbjct: 630 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 689

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   + R G VP   TY+I++      G + EA++    M + G  P  R  + 
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +V+ LL    +  A   ++K+ ++ F L+  T   L++     G
Sbjct: 750 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 141/281 (50%), Gaps = 2/281 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   + G V  A+E+  +   F C    + +N ++  LC        + ++RR+
Sbjct: 251 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRL 310

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  T+  +++ +C +GK+ +A     +M   G  P     ++L+ G    G 
Sbjct: 311 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 370

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L SA ++  +M +     D+ TF+SLI+  C+ G+++  + ++  + +  +  +V T+ I
Sbjct: 371 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 430

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I ++ K    DEA RLL+ L +     P   +Y P+I  + + G+ D+A      M+ K
Sbjct: 431 IIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 490

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           G  P++  YT+LI       R  EA  +  EM E G +P S
Sbjct: 491 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 531



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 148/318 (46%), Gaps = 3/318 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++   Y  S   + LS ++       L+D +  + +K + F C+     YN L+ +L   
Sbjct: 167 QMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGR 226

Query: 66  KLFHGAYALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              H   AL  R I+ + + PD  ++ +++   C  G++++A E ++ M++ G +P    
Sbjct: 227 GRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 286

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSV 183
            +++V GL     +    +++ ++ + G  + ++ TF S+I   CK+G++E  + +Y  +
Sbjct: 287 HNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 346

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  +  TY +LI    K G +  A  +   +      P    ++ +I G  R GQ 
Sbjct: 347 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 406

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDL 302
           DDA   +S+M      PN   ++++I    +  R  EA   L E+     + P +  ++ 
Sbjct: 407 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNP 466

Query: 303 VTDGLKNCGKHDLAEKIE 320
           V D L  CGK D A  I 
Sbjct: 467 VIDVLCKCGKVDEANLIR 484



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 121/279 (43%), Gaps = 10/279 (3%)

Query: 44  TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGK 102
           +A +CQQ       ++  LC       A  L  +M    G+ PD R  + LV++   +  
Sbjct: 141 SAHSCQQ-------IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANL 193

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFN 161
           +  +   L + S+ G        + L+  L+  G +     +  + I+   +  D+ +FN
Sbjct: 194 LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFN 253

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I+ +C+ G+V+  +E+   + + G   D  T+ I++  + +   +     +L  L  D
Sbjct: 254 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRD 313

Query: 222 GH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           G   P    +  +I G  + G+ +DA   +++M   G  PN   Y +LI   G+ G    
Sbjct: 314 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 373

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A     +MT +   P    F  + DG   CG+ D A +I
Sbjct: 374 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 412



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVK 66
           M  + +  +  T S+II    K    D A+ + N+     +      +YN ++  LC+  
Sbjct: 416 MAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCG 475

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  + + M  KG  PDK TY IL+  +C   ++ EA  F  EM + G +P     +
Sbjct: 476 KVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVN 535

Query: 127 LLVQGLLNAG 136
             +  LL AG
Sbjct: 536 CFISCLLKAG 545



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ + + G +D+A+ +++       Q  V  ++ ++ +LC+      A  L+  +
Sbjct: 392 TFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNEL 451

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R    P    Y  +++  C  GK+ EA    + M +KG  P      +L+ G      
Sbjct: 452 NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSR 511

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A    ++M++ G   D  T N  I  + K+G
Sbjct: 512 ISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 545


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 5/309 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T S ++    KH  +DNA+++ ++   +  Q   + YN+LL       +F  A 
Sbjct: 189 VAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAM 248

Query: 73  ALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +  +++R  G  P+  TY ++++  C  G+ +EA E    M             +L+ G
Sbjct: 249 KVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHG 308

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G ++SA ++ + M+K G VLD+  +NSLI+  C+ G      + + S    G+   
Sbjct: 309 LCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGI-RQ 367

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++TY I+   +  +GM+ EA  LL  L  D    P    +  +I G+   G  + AF   
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            + +  G   +   Y+ +I    + GR  +A      M + G  P S  ++ + +G    
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRV 487

Query: 311 GKHDLAEKI 319
            K + A KI
Sbjct: 488 SKINDAIKI 496



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 132/297 (44%), Gaps = 4/297 (1%)

Query: 3   KTIELMKPY--NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           +  EL+K    + S SP   T   +I    ++G  + A E+         +  V  Y+S+
Sbjct: 386 EATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSM 445

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +   C+    H A  + + M++ G  P+   Y  L+N +C   K+ +A +   EM+  G 
Sbjct: 446 INRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGC 505

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +   + L+ GL  A   + A  +  +M+++GF  D+ T+ SLI  +C+  +V+  + 
Sbjct: 506 CPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALR 565

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++  +   GL  DV  + ILI  +  AG +DEAF +   + E    P    Y  ++ G +
Sbjct: 566 IWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFY 625

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             G  D A   ++ +   G  P+   Y   I       R  E    L E+   G+ P
Sbjct: 626 EIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMP 682



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 118/251 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I  F K G   +A EV+       C+    +YN+L+   C V   + A  +   M
Sbjct: 441 SYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEM 500

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY  L++  C + K +EA    +EM ++GF P +R    L++GL     +
Sbjct: 501 TSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKV 560

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++++  G  +D+   N LI  +C +G+V+    +Y  + +     ++ TY  L
Sbjct: 561 DVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTL 620

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G ID+A  L   ++++G KP    Y   IKG+    +  +     +E+   G 
Sbjct: 621 MDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGI 680

Query: 259 PPNRPVYTMLI 269
            P    +++L+
Sbjct: 681 MPTVITWSILV 691



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 138/347 (39%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N      T  ++I    + G VD+A  V++          V +YNSL+   CEV  
Sbjct: 290 MMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGR 349

Query: 68  FHGAYAL--------IRRM-----IRKGFV----------------------PDKRTYAI 92
              A+          IR++     + KG +                      PDK T+  
Sbjct: 350 TGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGT 409

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C +G    A E L++  + G    V     ++      G    A ++   M+K G
Sbjct: 410 LIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDG 469

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +   +N+LI   C+  ++   +++Y  +   G C  + TY  LI  + KA    EA 
Sbjct: 470 CKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEAS 529

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   ++E G KP    YA +I+G+ R  + D A   + E+   G   +  V+ +LI   
Sbjct: 530 SLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGL 589

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G+  EA    +EM E   +P    ++ + DG    G  D A  +
Sbjct: 590 CSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASL 636



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 112/219 (51%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F +   +++A++++ + T+  C   ++ YN+L+  LC+ + +  A +L + M+ +G
Sbjct: 480 LINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERG 539

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F PD RTYA L+   C   K+  A     E+ D G    V   ++L+ GL +AG ++ A 
Sbjct: 540 FKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAF 599

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M ++    +L T+N+L++   + G ++    ++ ++   GL  D+ TY   I  +
Sbjct: 600 CIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGL 659

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                  E   LL+ ++  G  P    ++ +++ + + G
Sbjct: 660 CSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYG 698



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 5/220 (2%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
            F +  A N Q     YN +L +LC       A +L   + R+G  PD+ TY+ L++   
Sbjct: 149 AFGRRIAPNLQT----YNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLA 204

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDL 157
              ++  A + L EM + G        + L+ G    G  E A ++  ++++  G   +L
Sbjct: 205 KHDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNL 264

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
            T+  +++ +CK G  +   E++  +      AD  TY ILI  + ++G +D A R+  +
Sbjct: 265 ATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSD 324

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +V+ G     S+Y  +IKG    G+  +A+ F+      G
Sbjct: 325 MVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSG 364



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 5/208 (2%)

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF----VLDLETFNSLIETICKSGE 172
           G NP VR  + L+   + A     A      +    F      +L+T+N ++ ++C  G+
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD 173

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+  V ++ S+ + G+  D  TY  L+  ++K   +D A  LL  +   G +     Y  
Sbjct: 174 VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNA 233

Query: 233 IIKGMFRRGQFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           ++ G FR G F+ A   + ++ +  G  PN   Y +++    + GRF EA      M   
Sbjct: 234 LLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMAN 293

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
                +  + ++  GL   G  D A ++
Sbjct: 294 NHQADTVTYGILIHGLCRSGDVDSAARV 321



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/158 (19%), Positives = 71/158 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + +I    +   VD A+ ++++      Q  V+++N L+  LC       A+ +   
Sbjct: 545 RTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLE 604

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  K   P+  TY  L++ +   G + +A      + D G  P +   +  ++GL +   
Sbjct: 605 MKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNR 664

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
                 ++N+++  G +  + T++ L+  + K G ++ 
Sbjct: 665 TPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702



 Score = 46.2 bits (108), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L V     +++I      G VD A  ++ +    NC   ++ YN+L+    E+     A 
Sbjct: 575 LQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAA 634

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L   ++  G  PD  TY   +   CS  +  E    L E+   G  P V    +LV+ +
Sbjct: 635 SLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAV 694

Query: 133 LNAGYLE 139
           +  G ++
Sbjct: 695 IKYGPIQ 701


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 118/222 (53%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ + + G+VD+A+++         +  +  YN+L   LC V     A  L+  MI  G
Sbjct: 358 MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMG 417

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  TY  L++  C  G M EA+   +EM++KG  P V   ++++ G    G +  A+
Sbjct: 418 VVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAE 477

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +   +M K+GFV D+ T+ SL+   C +G+V+  ++++  + + G   +V  Y  LI  +
Sbjct: 478 RFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 537

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +K G  + AF+L  ++++ G  P  SLY+ ++  +    + D
Sbjct: 538 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 579



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 143/341 (41%), Gaps = 35/341 (10%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF------------- 60
           SVSP   S++++   K G VD+A  + +           L YNSLL              
Sbjct: 174 SVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 233

Query: 61  ----------------------ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
                                 +L   +      AL   M     V D   Y  ++NA+C
Sbjct: 234 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 293

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            +G MR A + L E    G  P  R   +L+ G    G +E+A+ ++  M  QG  L+  
Sbjct: 294 RAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQI 353

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            FN++I+  C+ G V+  +++  ++ K+G+  D+ TY  L   + +   +DEA  LLH +
Sbjct: 354 IFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIM 413

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
           +E G  P    Y  +I    + G   +A   F EM  KG  P+   Y ++I    + G  
Sbjct: 414 IEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSI 473

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EA  +  EM + G  P    +  +  G    GK D+A K+
Sbjct: 474 REAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 514



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 35/350 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + + +E+M+   +  +  T +++++       +     +FN+  A N    V LY +++ 
Sbjct: 231 VQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 290

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C       A  ++   +  G  P++RTY +L+N +C  G+M  A+  L +M  +G   
Sbjct: 291 AYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGL 350

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN------------------- 161
                + ++ G    G ++ A ++   M K G  LD+ T+N                   
Sbjct: 351 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLL 410

Query: 162 ----------------SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
                           +LI   CK G++     ++  + + G    V TY ++I   +K 
Sbjct: 411 HIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKK 470

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G I EA R    + + G  P    YA ++ G    G+ D A   F EMK +G  PN   Y
Sbjct: 471 GSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAY 530

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           T LI+   + GR   A     +M + GL P    +  +   L    + D+
Sbjct: 531 TALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDV 580



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 105/234 (44%), Gaps = 2/234 (0%)

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           +++V+  C SG++ +A+  L +M   G +      + L+   +        ++++  M  
Sbjct: 181 SVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMEN 240

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G    + T+  L++++  + ++     ++  +    +  DV  Y  +I A  +AG +  
Sbjct: 241 EGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRR 300

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A ++L   V +G +P    Y  +I G  + GQ + A    ++M+ +G   N+ ++  +I 
Sbjct: 301 AAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID 360

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
              R G   +A      M +MG+      ++ +  GL  C  + L E   LL +
Sbjct: 361 GYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGL--CRVNRLDEAKTLLHI 412


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 3/272 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S    S +I+E  K  LV+ A  +  K         V  YN+L+  LC+ + F  A  L 
Sbjct: 325 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 384

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M  +G  P++ TYAIL++A C  G + +A     +M DKG    V   + L+ G    
Sbjct: 385 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 444

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A+ +++ M+K+G      +++ LI  +C++G++  C+E++  + + G+  +  T+
Sbjct: 445 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 504

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K   +DEA RL   +++    P    +  +I+G    G    AF  + +M  
Sbjct: 505 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVE 564

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLV 286
            G  P+   Y  LI+ +C   G  V  AN  V
Sbjct: 565 MGLKPDNYTYRSLISGLCLTSG--VSKANEFV 594



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 2/309 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++V+  T S I+    K      A ++F+K           +Y + + A CE +   GA 
Sbjct: 182 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 241

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ RM  +G       Y +L+   C + +++EA E    M + G          LV G 
Sbjct: 242 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 301

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                LE A ++ + MI+ GFV      + +I+ + K   VE    +   +  LG+  +V
Sbjct: 302 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 361

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  + K    D+A RL   +   G +P    YA +I  + +RG  +DA C F +
Sbjct: 362 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 421

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG       Y  LI    + G    A   L  M + GLTP +  +  +  GL  C  
Sbjct: 422 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL--CRN 479

Query: 313 HDLAEKIEL 321
            DL+  +EL
Sbjct: 480 GDLSSCMEL 488



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 121/278 (43%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  V  AVEV N           + Y +L++  C ++    A  +   MIR GFVP + 
Sbjct: 268 KNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEA 327

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
             + +++       + EA     ++ D G  P V   + L+  L      + A ++  +M
Sbjct: 328 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 387

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   +  T+  LI  +CK G +E  + ++  +   G+   V  Y  LI    K G +
Sbjct: 388 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 447

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A  LL  +V++G  P  + Y+P+I G+ R G          EM  +G   N   +T L
Sbjct: 448 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 507

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           I    +  +  EAA    +M +  + P    F+++ +G
Sbjct: 508 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 545



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 1/222 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L R M  +G  PD   Y  +++A      M +A     +M   G++P      +L+  L 
Sbjct: 663 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 722

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            +GYL SA+ +  +M+    + +  T+N  ++     G++E   +++ ++ + G  A + 
Sbjct: 723 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIV 781

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           ++ ILI  + KAG I EA  L+  + E G  P    Y+ II  + + G  + AF  ++EM
Sbjct: 782 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 841

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             KG  P+   Y + I  C   G   +A      M   G+ P
Sbjct: 842 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 883



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 113/265 (42%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L++ LC+      A  +   M+  G   D+ TY  LV  +C   ++  A     +M 
Sbjct: 259 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 318

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P       ++  L     +E A  +  K+   G V ++  +N+LI+ +CK+   +
Sbjct: 319 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 378

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  +   GL  +  TY ILI A+ K GMI++A  L   + + G K     Y  +I
Sbjct: 379 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 438

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  ++G  D A    S M  +G  P    Y+ LI    R G          EM E G+ 
Sbjct: 439 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 498

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +  F  + +G     K D A ++
Sbjct: 499 WNNYTFTALINGFCKDKKMDEAARL 523



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++ AL + +    A     +M+  G+ P+  T+ +L+N  C SG +  A+   +E
Sbjct: 677 IFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKE 736

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P     +  +      G +E AK + + M+ QG +  + +FN LI+ +CK+G+
Sbjct: 737 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGK 795

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  +++   + + G   D  +Y  +I  + K G I++AF L + ++  G KP    Y  
Sbjct: 796 IQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNI 855

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            I+     G+ D A   ++ M   G  PN   Y  L++
Sbjct: 856 FIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLS 893



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 3/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K   +D A  +F+K    N     + +N ++   C V     A+ L  +M
Sbjct: 503 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 562

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  L++  C +  + +A EF+ ++ +            L+ G    G  
Sbjct: 563 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRF 622

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + ++M  +G  LDL +F  ++    K  + E    ++  + + G+  D   Y  +
Sbjct: 623 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 682

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+SK   + +A      +V DG+ P    +  +I  + + G    A     EM     
Sbjct: 683 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 742

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN+  Y   +      G   +A +    M +  L  I   F+++  GL   GK  + E 
Sbjct: 743 LPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVS-FNILIKGLCKAGK--IQEA 799

Query: 319 IELL 322
           I+L+
Sbjct: 800 IDLM 803



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 106/223 (47%), Gaps = 13/223 (5%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLL---------YNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++D   +  N   A NC   +++         +  L+  LC+      A  L + M+   
Sbjct: 682 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 741

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+K TY   ++ + + G M +A++    M  +G    +   ++L++GL  AG ++ A 
Sbjct: 742 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 800

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +++K+ + GF  D  +++++I  +CK G++    E++  +   GL  DV  Y I I   
Sbjct: 801 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 860

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG---MFRRGQ 242
           +  G  D+A  +  N++  G +P    Y  ++ G   M  +GQ
Sbjct: 861 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQ 903



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 136/359 (37%), Gaps = 37/359 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + V+    + +I  + K G +D A  + +             Y+ L+  LC    
Sbjct: 422 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 481

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L R M  +G   +  T+  L+N +C   KM EA     +M D    P     ++
Sbjct: 482 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 541

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSV 183
           +++G    G +  A Q+ ++M++ G   D  T+ SLI  +C +  V    EF  ++  S 
Sbjct: 542 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 601

Query: 184 CKL-------------------------------GLCADVSTYKILIPAVSKAGMIDEAF 212
             L                               G+  D+ ++ I++ A  K    +++ 
Sbjct: 602 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 661

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G KP    Y  +I  + +      A   + +M + G+ PN   +T+LI   
Sbjct: 662 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 721

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE--LLEVSLRSV 329
            + G    A     EM    + P    ++   D     G  + A+ +   +L+  L S+
Sbjct: 722 CKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASI 780


>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
           mitochondrial [Vitis vinifera]
          Length = 531

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 41/365 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +  M+   L ++ +T +LI   + +   V  AVE F K   F  Q  +  +N LL 
Sbjct: 164 IWNLVNDMRSKGL-LTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLD 222

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ +    A  +  +M  + F PD ++Y IL+  W     +    E  +EM D+GF P
Sbjct: 223 ALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEP 282

Query: 121 -------------PVRGRD----------------------LLVQGLLNAGYLESAKQMV 145
                          R  D                       L+ GL +   L  A Q  
Sbjct: 283 DAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFF 342

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            +    GF  +  T+N+++ + C+S  ++    +   + K G+     TY I++  + KA
Sbjct: 343 ERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKA 402

Query: 206 GMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
               EA+R+   +  E G +P  S Y  +++      + D A   + EMK KG  P   +
Sbjct: 403 RRTKEAYRVFQGMSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHM 462

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD----LAEKIE 320
           ++ LI       +  EA  Y  EM +MG+ P +  F  +   L + GK D    LA+K++
Sbjct: 463 FSTLINSLCYENKLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLD 522

Query: 321 LLEVS 325
            +  +
Sbjct: 523 KIRTT 527



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 123/253 (48%), Gaps = 1/253 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+ AL ++K F   + L+  M  KG +  + T+A++   +  + K++EA E  ++M 
Sbjct: 148 YNALIEALGKIKQFKMIWNLVNDMRSKGLLT-QETFALISRRYARARKVKEAVETFEKME 206

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +   + L+  L  + ++E A+++ +KM  + F  D++++  L+E   +   + 
Sbjct: 207 KFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILLEGWGQEQNLL 266

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+Y  +   G   D  TY ILI A  KA   D A  L H +  +   P P +Y  +I
Sbjct: 267 RLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLI 326

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+    +  +A  FF   K  G  P  P Y  ++    +  R  +A   + EM + G+ 
Sbjct: 327 NGLGSERRLTEALQFFERSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVG 386

Query: 295 PISRCFDLVTDGL 307
           P +R +D++   L
Sbjct: 387 PQTRTYDIILHHL 399



 Score = 43.1 bits (100), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 71/167 (42%), Gaps = 1/167 (0%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++GF    E +N+LIE + K  + +    +   +   GL     T+ ++    ++A  + 
Sbjct: 138 QKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGLLTQ-ETFALISRRYARARKVK 196

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA      + + G +P  S +  ++  + +    + A   F +MK +   P+   YT+L+
Sbjct: 197 EAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEVFDKMKDRKFRPDIKSYTILL 256

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+    +       EM + G  P +  + ++ +      ++D A
Sbjct: 257 EGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHCKARRYDAA 303


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 142/305 (46%), Gaps = 5/305 (1%)

Query: 14  SVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P  +S   +I  + K G +D    + +       +  V  Y++L+ ALC+     GA
Sbjct: 270 SLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGA 329

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L   M  +G +P+   +  L++    +G++   +E  Q+M  KG  P +   + LV G
Sbjct: 330 HRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNG 389

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L +A+ +V+ MI++G   D  T+ +LI+  C+ G+V+  +E+   + + G+  D
Sbjct: 390 FCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELD 449

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              +  LI  + K G + +A R L  ++  G KP    Y  ++    ++G     F    
Sbjct: 450 RVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLK 509

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK--- 308
           EM+  GH PN   Y +L+    + G+   A   L  M  +G+ P    ++ + +G     
Sbjct: 510 EMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHHRHA 569

Query: 309 NCGKH 313
           N  KH
Sbjct: 570 NASKH 574



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 112/272 (41%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V ++N L+   C+      A  +   + ++   P   ++  L+N +C  G +        
Sbjct: 240 VYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKH 299

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M      P V     L+  L     ++ A ++  +M ++G + +   F +LI    ++G
Sbjct: 300 HMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNG 359

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   E Y  +   GL  D+  Y  L+    K G +  A  ++  ++  G +P    Y 
Sbjct: 360 QIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYT 419

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  R G  D A     EM   G   +R  ++ LI    + GR ++A   L EM   
Sbjct: 420 TLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRA 479

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+ P    + ++ D    C K D     +LL+
Sbjct: 480 GMKPDDVTYTMMMDAF--CKKGDAQTGFKLLK 509



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           ++  GF  +   + IL+N +C  G + +AQ+   E++ +   P V   + L+ G    G 
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGN 290

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L+   ++ + M K     D+ T+++LI  +CK  +++    ++Y +C+ GL  +   +  
Sbjct: 291 LDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTT 350

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI   S+ G ID        ++  G +P   LY  ++ G  + G    A      M  +G
Sbjct: 351 LIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             P++  YT LI    RGG    A     EM + G+
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGI 446



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 98/188 (52%), Gaps = 3/188 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F + G VD A+E+  +      +   + +++L+  +C+      A   +R M
Sbjct: 417 TYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREM 476

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD  TY ++++A+C  G  +   + L+EM   G  P V   ++L+ GL   G +
Sbjct: 477 LRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQM 536

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A  +++ M+  G V D  T+N+L+E   +        + Y    ++G+ AD+++YK L
Sbjct: 537 KNADMLLDAMLNVGVVPDDITYNTLLEGHHRHANAS---KHYKQKPEIGIVADLASYKSL 593

Query: 199 IPAVSKAG 206
           +  + +A 
Sbjct: 594 VNELYRAS 601



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 112/270 (41%)

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           C  L ++L+    ++          R   +  FV   R    L++             F 
Sbjct: 169 CDFLVDALMITYMDLGFIPDVIQCFRLSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFY 228

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            E+ D GF   V   ++L+      G +  A+++ +++ K+     + +FN+LI   CK 
Sbjct: 229 MEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKV 288

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G ++    + + + K     DV TY  LI A+ K   +D A RL + + E G  P   ++
Sbjct: 289 GNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIF 348

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G  R GQ D     + +M  KG  P+  +Y  L+    + G  V A N +  M  
Sbjct: 349 TTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIR 408

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
            GL P    +  + DG    G  D A +I 
Sbjct: 409 RGLRPDKVTYTTLIDGFCRGGDVDTALEIR 438


>gi|255554881|ref|XP_002518478.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542323|gb|EEF43865.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 2/301 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + +++ + + G ++NA  + ++          ++YNS++  L       GA  L+  
Sbjct: 272 RTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLLLSD 331

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI K   PD+ TY+I++   C +G + EA +FLQ + +          ++++  L  +  
Sbjct: 332 MIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNN 391

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  AKQ++  M  +G V D+ TF +LI+  CK G+VE  +++Y  + K G   ++  Y  
Sbjct: 392 LAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNS 451

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I   +K G  D A  L+  L   G     + Y  +I G    G+ D AF  FSEM+  G
Sbjct: 452 VINGFAKEGSFDPAILLIDTLRRMGLFDVVT-YNTLIHGYCNCGKIDQAFALFSEMRNSG 510

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLA 316
              +   Y  LI    + G  ++A   +  M   GL P    +  L+T   K C   ++ 
Sbjct: 511 ILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPEEVI 570

Query: 317 E 317
           E
Sbjct: 571 E 571



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 151/358 (42%), Gaps = 49/358 (13%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK  + M  Y    +  T +LII   GK G +  AV V  +         V+ +N ++  
Sbjct: 148 WKMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDG 207

Query: 62  LCEVKLFHGAYALIRRM-IRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             ++     A  L+R+M +  G    PD  TY   VN +C  G +  A+EF +EM  K  
Sbjct: 208 AIKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEI 267

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P VR    LV G    G LE+A ++ ++++++G + +   +NS+I  +   G++E    
Sbjct: 268 EPNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASL 327

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL--------------HNLVED--- 221
           +   +    +  D  TY I+I  + + G ++EAF+ L              HN+V +   
Sbjct: 328 LLSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLC 387

Query: 222 ------------------GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
                             G  P    +  +I    + G+ ++A   + +M   G  PN  
Sbjct: 388 RSNNLAGAKQLLANMYVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLL 447

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT-----DGLKNCGKHDLA 316
           +Y  +I    + G F  A   +  +  MGL      FD+VT      G  NCGK D A
Sbjct: 448 IYNSVINGFAKEGSFDPAILLIDTLRRMGL------FDVVTYNTLIHGYCNCGKIDQA 499



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 119/254 (46%), Gaps = 2/254 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++IE   ++G ++ A +        +  +    +N ++  LC      GA  L+  M
Sbjct: 343 TYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYLCRSNNLAGAKQLLANM 402

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G VPD  T+  L++  C  GK+  A +  ++M   G  P +   + ++ G    G  
Sbjct: 403 YVRGLVPDVVTFGTLIDRHCKDGKVENAIQVYEKMIKTGEKPNLLIYNSVINGFAKEGSF 462

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +++ + + G + D+ T+N+LI   C  G+++    ++  +   G+ A   TY  L
Sbjct: 463 DPAILLIDTLRRMG-LFDVVTYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTL 521

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I ++ KAG + +A  L+  +V  G  P    Y  +I    ++   ++       M +KG 
Sbjct: 522 INSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPEEVIELHDYMVLKGV 581

Query: 259 PPNRPVY-TMLITM 271
            P+R  Y TM+I +
Sbjct: 582 VPDRQTYQTMVIPL 595



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 132/313 (42%), Gaps = 40/313 (12%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALI-------------------------------- 75
           C+    ++++L+    ++    GAY +I                                
Sbjct: 89  CKSSPAVFDALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFW 148

Query: 76  ---RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              + M+  G++ +  T+ +++ A    G++ EA   +      G  P V   ++++ G 
Sbjct: 149 KMYKEMVSYGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGA 208

Query: 133 LNAGYLESAKQMVNKM-IKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +  G ++ A ++V KM +  G  +  D  T+NS +   CK G +    E    +    + 
Sbjct: 209 IKMGAMDLALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIE 268

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY  L+   ++ G ++ AFRL   LVE G  P   +Y  II  +   G  + A   
Sbjct: 269 PNVRTYATLVDGYTRVGSLENAFRLCDELVEKGLLPNSVIYNSIIHWLSMEGDMEGASLL 328

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            S+M  K   P++  Y+++I    R G   EA  +L  + EM L   +   ++V + L  
Sbjct: 329 LSDMIDKRIYPDQFTYSIVIEGLCRNGYLNEAFKFLQMILEMSLVRDAFSHNVVINYL-- 386

Query: 310 CGKHDLAEKIELL 322
           C  ++LA   +LL
Sbjct: 387 CRSNNLAGAKQLL 399



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 5/206 (2%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D LV+     G  E A +++ K+   GF + +  +N+ +  + K  +V    +MY  +  
Sbjct: 97  DALVRTCTQIGATEGAYEVITKLQLDGFWVTVHAWNNFLSHLLKLNDVNRFWKMYKEMVS 156

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   +V+T+ ++I A+ K G + EA  +++  ++ G  P    +  II G  + G  D 
Sbjct: 157 YGYIENVNTFNLIIYALGKEGRLVEAVSVIYRSLKTGIWPNVVTFNMIIDGAIKMGAMDL 216

Query: 246 AFCFFSEMKIKGH---PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           A     +M++       P+   Y   +    + G    A  +  EM    + P  R +  
Sbjct: 217 ALKLVRKMEVMSGCSVKPDSVTYNSFVNGFCKIGNLAVAEEFKKEMLGKEIEPNVRTYAT 276

Query: 303 VTDGLKNCGKHDLAEKI--ELLEVSL 326
           + DG    G  + A ++  EL+E  L
Sbjct: 277 LVDGYTRVGSLENAFRLCDELVEKGL 302



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 7/156 (4%)

Query: 23  IIEEFGKHGLVDNAV---EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +I  F K G  D A+   +   +   F+    V+ YN+L+   C       A+AL   M 
Sbjct: 452 VINGFAKEGSFDPAILLIDTLRRMGLFD----VVTYNTLIHGYCNCGKIDQAFALFSEMR 507

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G +    TY  L+N+ C +G + +A+E ++ M  +G  P      +L+         E
Sbjct: 508 NSGILASHVTYNTLINSLCKAGHVLQAKELMKMMVLRGLIPDYVTYTILITSFSKKCSPE 567

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
              ++ + M+ +G V D +T+ +++  + +   VEF
Sbjct: 568 EVIELHDYMVLKGVVPDRQTYQTMVIPLLQEESVEF 603



 Score = 45.1 bits (105), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 54/121 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G +D A  +F++          + YN+L+ +LC+      A  L++ M
Sbjct: 482 TYNTLIHGYCNCGKIDQAFALFSEMRNSGILASHVTYNTLINSLCKAGHVLQAKELMKMM 541

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G +PD  TY IL+ ++       E  E    M  KG  P  +    +V  LL    +
Sbjct: 542 VLRGLIPDYVTYTILITSFSKKCSPEEVIELHDYMVLKGVVPDRQTYQTMVIPLLQEESV 601

Query: 139 E 139
           E
Sbjct: 602 E 602


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  117 bits (294), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 131/272 (48%), Gaps = 3/272 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S    S +I+E  K  LV+ A  +  K         V  YN+L+  LC+ + F  A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M  +G  P++ TYAIL++A C  G + +A     +M DKG    V   + L+ G    
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A+ +++ M+K+G      +++ LI  +C++G++  C+E++  + + G+  +  T+
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 481

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K   +DEA RL   +++    P    +  +I+G    G    AF  + +M  
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVE 541

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLV 286
            G  P+   Y  LI+ +C   G  V  AN  V
Sbjct: 542 MGLKPDNYTYRSLISGLCLTSG--VSKANEFV 571



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 2/309 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++V+  T S I+    K      A ++F+K           +Y + + A CE +   GA 
Sbjct: 159 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 218

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ RM  +G       Y +L+   C + +++EA E    M + G          LV G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                LE A ++ + MI+ GFV      + +I+ + K   VE    +   +  LG+  +V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  + K    D+A RL   +   G +P    YA +I  + +RG  +DA C F +
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG       Y  LI    + G    A   L  M + GLTP +  +  +  GL  C  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL--CRN 456

Query: 313 HDLAEKIEL 321
            DL+  +EL
Sbjct: 457 GDLSSCMEL 465



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 121/278 (43%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  V  AVEV N           + Y +L++  C ++    A  +   MIR GFVP + 
Sbjct: 245 KNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEA 304

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
             + +++       + EA     ++ D G  P V   + L+  L      + A ++  +M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   +  T+  LI  +CK G +E  + ++  +   G+   V  Y  LI    K G +
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 424

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A  LL  +V++G  P  + Y+P+I G+ R G          EM  +G   N   +T L
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 484

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           I    +  +  EAA    +M +  + P    F+++ +G
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 125/277 (45%), Gaps = 1/277 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +L+ ++  F + G       ++++      +  ++ +  +++A  +      +  L R M
Sbjct: 585 SLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREM 644

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD   Y  +++A      M +A     +M   G++P      +L+  L  +GYL
Sbjct: 645 KEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYL 704

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA+ +  +M+    + +  T+N  ++     G++E   +++ ++ + G  A + ++ IL
Sbjct: 705 GSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIVSFNIL 763

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG I EA  L+  + E G  P    Y+ II  + + G  + AF  ++EM  KG 
Sbjct: 764 IKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGL 823

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y + I  C   G   +A      M   G+ P
Sbjct: 824 KPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 860



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 113/265 (42%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L++ LC+      A  +   M+  G   D+ TY  LV  +C   ++  A     +M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P       ++  L     +E A  +  K+   G V ++  +N+LI+ +CK+   +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  +   GL  +  TY ILI A+ K GMI++A  L   + + G K     Y  +I
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  ++G  D A    S M  +G  P    Y+ LI    R G          EM E G+ 
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 475

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +  F  + +G     K D A ++
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL 500



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++ AL + +    A     +M+  G+ P+  T+ +L+N  C SG +  A+   +E
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKE 713

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P     +  +      G +E AK + + M+ QG +  + +FN LI+ +CK+G+
Sbjct: 714 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGK 772

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  +++   + + G   D  +Y  +I  + K G I++AF L + ++  G KP    Y  
Sbjct: 773 IQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNI 832

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            I+     G+ D A   ++ M   G  PN   Y  L++
Sbjct: 833 FIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLS 870



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 3/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K   +D A  +F+K    N     + +N ++   C V     A+ L  +M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  L++  C +  + +A EF+ ++ +            L+ G    G  
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRF 599

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + ++M  +G  LDL +F  ++    K  + E    ++  + + G+  D   Y  +
Sbjct: 600 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+SK   + +A      +V DG+ P    +  +I  + + G    A     EM     
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 719

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN+  Y   +      G   +A +    M +  L  I   F+++  GL   GK  + E 
Sbjct: 720 LPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIV-SFNILIKGLCKAGK--IQEA 776

Query: 319 IELL 322
           I+L+
Sbjct: 777 IDLM 780



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 108/227 (47%), Gaps = 11/227 (4%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLL---------YNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++D   +  N   A NC   +++         +  L+  LC+      A  L + M+   
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+K TY   ++ + + G M +A++    M  +G    +   ++L++GL  AG ++ A 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +++K+ + GF  D  +++++I  +CK G++    E++  +   GL  DV  Y I I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           +  G  D+A  +  N++  G +P    Y  ++ G+     +D + CF
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFS-CF 883



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 136/359 (37%), Gaps = 37/359 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + V+    + +I  + K G +D A  + +             Y+ L+  LC    
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L R M  +G   +  T+  L+N +C   KM EA     +M D    P     ++
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSV 183
           +++G    G +  A Q+ ++M++ G   D  T+ SLI  +C +  V    EF  ++  S 
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 184 CKL-------------------------------GLCADVSTYKILIPAVSKAGMIDEAF 212
             L                               G+  D+ ++ I++ A  K    +++ 
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G KP    Y  +I  + +      A   + +M + G+ PN   +T+LI   
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 698

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE--LLEVSLRSV 329
            + G    A     EM    + P    ++   D     G  + A+ +   +L+  L S+
Sbjct: 699 CKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASI 757


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 137/307 (44%), Gaps = 1/307 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T E M+   L       S +I+ F + G +D  + + +   +      ++ YN L+  LC
Sbjct: 231 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 290

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  +++ MI  G  P+ RT+ +L+  +C    M  A E L EM  +   P   
Sbjct: 291 KFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 350

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               ++ GL +   L  A +++ KM   G   ++  +++LI      G +E    +   +
Sbjct: 351 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGM 410

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  D+  Y  +I  +SKAG ++EA   L  +   G KP    +   I G  + G+ 
Sbjct: 411 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 470

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDL 302
            +A  +F EM   G  PN P+YT+LI    + G  +EA +    +  +G+ P +  C   
Sbjct: 471 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAF 530

Query: 303 VTDGLKN 309
           +   LKN
Sbjct: 531 IHGLLKN 537



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 2/235 (0%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
            M+  G +P+   Y +L+N    +G + EA    + +   G  P V+     + GLL  G
Sbjct: 479 EMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNG 538

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            ++ A ++ +++ ++G V D+ T++SLI   CK GEVE   E++  +C  G+  ++  Y 
Sbjct: 539 RVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYN 598

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+  + K+G I  A +L   + E G +P    Y+ +I G  +     +AF  F EM  K
Sbjct: 599 ALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK 658

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNC 310
           G  P+  VY  L+  C + G   +A N   EM + G    +  F+ + DG  K+C
Sbjct: 659 GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSC 712



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 142/337 (42%), Gaps = 38/337 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G V+ A E+ ++         + +YN+L+  LC+      A  L   M
Sbjct: 561 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 620

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ +++ +C S  + EA     EM  KG  P     + LV G    G +
Sbjct: 621 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 680

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV--------------- 183
           E A  +  +M+++GF   L +FN+LI+  CKS +++   +++  +               
Sbjct: 681 EKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 739

Query: 184 ----CKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
               CK G                L  D  TY  L+   +K G   E F L   +V  G 
Sbjct: 740 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 799

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +I    +     +AF    E+  KG      ++ +LIT   +     EA+ 
Sbjct: 800 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 859

Query: 284 YLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEKI 319
            L EM E+GL P ++ C  LV       GK D A ++
Sbjct: 860 LLDEMGELGLKPSLAACSTLVR-SFHEAGKMDEATRV 895



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 134/314 (42%), Gaps = 18/314 (5%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP    ++I+ + + G++D A  VF           V   +S+L +L            +
Sbjct: 155 SPVVFDILIDSYKRMGMLDEAANVF----------FVAKNDSILISLIRCNS-------L 197

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M  KG VP+  TY I+    C + +M EA+   +EM   G  P       L+ G +  
Sbjct: 198 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 257

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++   ++ + M+  G  ++L T+N LI  +CK G++E   E+   +  LG   +  T+
Sbjct: 258 GDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 317

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            +LI    +   +  A  LL  + +    P    Y  +I G+        A     +M  
Sbjct: 318 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 377

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  PN  VY+ LI      GR  EA   L  M+  G+ P   C++ +   L   GK + 
Sbjct: 378 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 437

Query: 316 AEKIELLEVSLRSV 329
           A    LLE+  R +
Sbjct: 438 ASTY-LLEIQGRGL 450



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 145/322 (45%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKPY-NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  E++K    L   P  +T  L+IE + +   +  A+E+ ++    N     + Y +
Sbjct: 295 MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 354

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC  K    A  L+ +M   G  P+   Y+ L+  + S G++ EA+  L  MS  G
Sbjct: 355 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSG 414

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + ++  L  AG +E A   + ++  +G   D  TF + I    K+G++    
Sbjct: 415 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 474

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           + +  +   GL  +   Y +LI    KAG + EA  +  +L   G  P     +  I G+
Sbjct: 475 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGL 534

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+  +A   FSE+K KG  P+   Y+ LI+   + G   +A     EM   G+ P  
Sbjct: 535 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 594

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++ + DGL   G    A K+
Sbjct: 595 FIYNALVDGLCKSGDIQRARKL 616



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G ++ A E+        C+     +  L+   C       A  L+  M
Sbjct: 281 TYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 340

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++  VP   +Y  ++N  C    +  A + L++M+  G  P V     L+ G  + G +
Sbjct: 341 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRI 400

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A+++++ M   G   D+  +N++I  + K+G++E        +   GL  D  T+   
Sbjct: 401 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 460

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK G + EA +    +++ G  P   LY  +I G F+ G   +A   F  +   G 
Sbjct: 461 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV 520

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+    +  I    + GR  EA     E+ E GL P    +  +  G   C + ++ + 
Sbjct: 521 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF--CKQGEVEKA 578

Query: 319 IEL 321
            EL
Sbjct: 579 FEL 581



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 123/288 (42%), Gaps = 2/288 (0%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A ++  K T    +  V++Y++L+           A  L+  M   G  PD   Y  +++
Sbjct: 368 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 427

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               +GKM EA  +L E+  +G  P        + G    G +  A +  ++M+  G + 
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +   +  LI    K+G +   + ++  +  LG+  DV T    I  + K G + EA ++ 
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             L E G  P    Y+ +I G  ++G+ + AF    EM +KG  PN  +Y  L+    + 
Sbjct: 548 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 607

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G    A      M E GL P S  +  + DG   C   ++AE   L  
Sbjct: 608 GDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY--CKSENVAEAFSLFH 653



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T    I  + K G +  A + F++           LY  L+    +      A ++ R +
Sbjct: 456 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHL 515

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G +PD +T +  ++    +G+++EA +   E+ +KG  P V     L+ G    G +
Sbjct: 516 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 575

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++ ++M  +G   ++  +N+L++ +CKSG+++   +++  + + GL  D  TY  +
Sbjct: 576 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 635

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  + EAF L H +   G +P   +Y  ++ G  + G  + A   F EM  KG 
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                  T++   C +  +  EA+    EM    + P    +  V D     GK + A
Sbjct: 696 ATTLSFNTLIDGYC-KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 752



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 1/273 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    K G +  A+ +F    A      V   ++ +  L +      A  +   +  
Sbjct: 493 TVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 552

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG VPD  TY+ L++ +C  G++ +A E   EM  KG  P +   + LV GL  +G ++ 
Sbjct: 553 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 612

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ + M ++G   D  T++++I+  CKS  V     +++ +   G+      Y  L+ 
Sbjct: 613 ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH 672

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G +++A  L   +++ G     S +  +I G  +  +  +A   F EM  K   P
Sbjct: 673 GCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 731

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +   YT +I    + G+  EA     EM E  L
Sbjct: 732 DHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 764



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            L +N+L+   C+      A  L + MI K  +PD  TY  +++  C +GKM EA    +
Sbjct: 698 TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 757

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM ++           L+ G    G       +  KM+ +G   D  T+  +I   CK  
Sbjct: 758 EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 817

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +    ++   V   G+    + + +LI A+ K   + EA +LL  + E G KP  +  +
Sbjct: 818 NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACS 877

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            +++     G+ D+A   F  +K  G  P+      L+ 
Sbjct: 878 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVN 916



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 93/201 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A  +F +    N     + Y SL++   ++      +AL  +M
Sbjct: 735 TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 794

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD+ TY +++ A C    + EA +   E+  KG        DLL+  L     L
Sbjct: 795 VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDL 854

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +++++M + G    L   ++L+ +  ++G+++    ++  V  LGL  D +T   L
Sbjct: 855 TEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDL 914

Query: 199 IPAVSKAGMIDEAFRLLHNLV 219
           +         ++A  L+  LV
Sbjct: 915 VNGNLNDTDSEDARNLIKQLV 935



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  NL V   T + ++  + K G       +F K  A   +   + Y  +++A C+   
Sbjct: 759 MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 818

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ L   ++ KG +     + +L+ A C    + EA + L EM + G  P +     
Sbjct: 819 LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACST 878

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           LV+    AG ++ A ++   +   G V D  T   L+
Sbjct: 879 LVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 915


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM B G  P       L+ G    G ++
Sbjct: 199 ASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVP 414



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G +P V    +L+ GL     ++ A ++ ++M+  G V +  TF +LI+  CK+G V
Sbjct: 198 QASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 258 DLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF +   M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 318 IDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    + ++ +  + C K D+    +LL+
Sbjct: 378 KPEIGTYTMIIN--EXCKKGDVWTGSKLLK 405



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 112/251 (44%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + K G +D    + +   A      V  Y+ L+  LC+      
Sbjct: 165 WGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDD 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +   P +   + L+ 
Sbjct: 225 ANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G++E   E    + K  +  
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRX 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G         
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLL 404

Query: 251 SEMKIKGHPPN 261
            EM+  G+ PN
Sbjct: 405 KEMQRXGYVPN 415



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DXYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+   CK GE+     ++ S+ K GL   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G  P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 35/176 (19%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K+G VD A+E++ +  + +    ++ YN+L++ LC+      A+ LI  M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEM 302

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMR---------------------------------- 104
             KG  PDK TY  L++  C  G +                                   
Sbjct: 303 SMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRS 362

Query: 105 -EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            +A++ L+EM   G  P +    +++      G + +  +++ +M + G+V ++ T
Sbjct: 363 VDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N  C  G +    + L+EM   G+ P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNV 416


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 151/301 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F     ++ A+++FNK    N    V  +N L+   C+    + A  ++  M
Sbjct: 238 TYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++    PD  TY  L++ +CS  K+ +A++    M+  G    V+    +V G      +
Sbjct: 298 MKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMV 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M  +  + ++ T++SLI+ +CK G + + +++   +   G   ++ TY  +
Sbjct: 358 DEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSI 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K   +D+A  LL NL + G +P    Y  +IKG+ + G+ +DA   F ++ +KG+
Sbjct: 418 LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGY 477

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT++I      G F +A   L +M + G  P ++ ++LV   L    ++D AEK
Sbjct: 478 NLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEK 537

Query: 319 I 319
           +
Sbjct: 538 L 538



 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G +  A+++  +      Q   ++YN ++  +C+ KL + A+ L  +M+ K 
Sbjct: 172 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 231

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ + +  K+  A +   +M  +  NP V   ++LV G    G +  AK
Sbjct: 232 ICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAK 291

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+K     D+ T+NSL++  C   +V    +++ S+   G+ A+V  Y  ++   
Sbjct: 292 VVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGF 351

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA  L   +      P    Y+ +I G+ + G+   A     EM  +G PPN 
Sbjct: 352 CKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNI 411

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y+ ++    +     +A   L  + + G+ P    + ++  GL   G+ + A+ +
Sbjct: 412 VTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNV 468



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 138/286 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  N++ +  T +++++ F K G V++A  V       + +  V+ YNSL+   C +  
Sbjct: 262 MKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINK 321

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  +   M   G + + + Y  +VN +C    + EA    +EM  +   P V     
Sbjct: 322 VNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSS 381

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G +  A ++V++M  +G   ++ T++S+++ +CK+  V+  + +  ++   G
Sbjct: 382 LIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQG 441

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY ILI  + ++G +++A  +  +L+  G+      Y  +I+G   +G FD A 
Sbjct: 442 IRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKAL 501

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              S+M+  G  PN   Y ++I           A   L EM   GL
Sbjct: 502 ALLSKMEDNGCIPNAKTYELVILSLFEKDENDTAEKLLREMIVRGL 547



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 143/339 (42%), Gaps = 37/339 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  F + GL   +  +F K          + +N+L+  LC     H A     ++
Sbjct: 98  TFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKV 157

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF  D+ +Y  L+N  C  G++  A + L+ +  K   P     ++++  +  A  +
Sbjct: 158 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLV 217

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M+ +    D+ T+N+LI       ++ + ++++  + K  +  +V T+ IL
Sbjct: 218 NDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNIL 277

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKP------------------------FPSL----- 229
           +    K G +++A  +L  +++D  KP                        F S+     
Sbjct: 278 VDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGV 337

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  ++ G  +    D+A   F EM+ +   PN   Y+ LI    + GR   A  
Sbjct: 338 IANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALK 397

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            + EM + G  P    +  + D L  C  H + + I LL
Sbjct: 398 LVDEMHDRGQPPNIVTYSSILDAL--CKNHHVDKAIALL 434



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 139/311 (44%), Gaps = 1/311 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLF 68
           P  + + P ++ L  +   K    +N +  FN      N       +N +L +L + K  
Sbjct: 18  PNFIGLFPSSIRLFSQLHHKQDEENNLISSFNHLLLHKNPTPPTFQFNKILSSLVKAKHH 77

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A +L ++M   G   D  T+ IL+N +   G    +     ++  KG++P     + L
Sbjct: 78  STALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTL 137

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G++  A    +K++ QGF LD  ++ +LI  +CK G +   +++   V    +
Sbjct: 138 IKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLV 197

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +   Y ++I  + KA ++++AF L   +V     P    Y  +I G     + + A  
Sbjct: 198 QPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAID 257

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F++MK +   PN   + +L+    + G+  +A   L  M +  + P    ++ + DG  
Sbjct: 258 LFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYC 317

Query: 309 NCGKHDLAEKI 319
           +  K + A+ I
Sbjct: 318 SINKVNKAKDI 328



 Score = 50.8 bits (120), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I++   K+  VD A+ +         +  +  Y  L+  LC+      A  +   +
Sbjct: 413 TYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDL 472

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG+  D   Y +++  +C  G   +A   L +M D G  P  +  +L++  L      
Sbjct: 473 LVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDEN 532

Query: 139 ESAKQMVNKMIKQGFV 154
           ++A++++ +MI +G +
Sbjct: 533 DTAEKLLREMIVRGLL 548


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 144/309 (46%), Gaps = 23/309 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNA---VEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           M+   L ++  T + +I+ F K G +D+A   VE   KC     Q  V+ YN+L+   C+
Sbjct: 177 MRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKC---GIQPSVVCYNALINGYCK 233

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A  LIR M  K   PD  TY+ +++ +C  G +  A +  Q+M  KG  P    
Sbjct: 234 LGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAIT 293

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L++GL     L  A ++   M++ G   D  T+ +LI+  CK G VE  + ++  + 
Sbjct: 294 YSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMI 353

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP----------------FPS 228
           + G+  DV TY +LI  +SK+    EA RLL  L  +   P                F S
Sbjct: 354 RKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKS 413

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + A ++KG   +G   +A   +  M  +    +  VY++LI    RGG   +A ++  +M
Sbjct: 414 VVA-LLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 472

Query: 289 TEMGLTPIS 297
              G +P S
Sbjct: 473 LRSGFSPNS 481



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 146/321 (45%), Gaps = 3/321 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVK 66
           M+    + +  T + ++  F + G +D A  V +      N +  ++ +NS++  LC+  
Sbjct: 36  MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG 95

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
              GA  +   M+R+G  PD  +Y  L++ +C  G + E+     EM+ +G  P V    
Sbjct: 96  RMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFT 155

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+     AG LE A  +V +M ++G  ++  TF +LI+  CK G ++  +     + K 
Sbjct: 156 SLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKC 215

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+   V  Y  LI    K G +D A  L+  +     KP    Y+ II G  + G  D A
Sbjct: 216 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSA 275

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           F    +M  KG  P+   Y+ LI       R  +A      M ++G+ P    +  + DG
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335

Query: 307 LKNCGKHDLAEKIELLEVSLR 327
             +C + ++ + + L +  +R
Sbjct: 336 --HCKEGNVEKALSLHDEMIR 354



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 5/312 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++++      G ++ AV V        C    + YN+L+ A C      GA 
Sbjct: 6   VAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAE 65

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++  M  +G   P+  T+  +VN  C +G+M  A++   EM  +G  P V   + L+ G
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L  +  + ++M ++G V D+ TF SLI   CK+G +E  V +   + + GL  +
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+  LI    K G +D+A   +  + + G +P    Y  +I G  + G+ D A     
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+ K   P+   Y+ +I+   + G    A     +M + G+ P +  +  +  GL  C 
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGL--CE 303

Query: 312 KHDLAEKIELLE 323
           +  L +  EL E
Sbjct: 304 EKRLNDACELFE 315



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 1/243 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+R G  P+  TY ILV A C+ G++ EA   + +M   G  P     + LV     AG 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 138 LESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           L+ A+++V+ M ++G    +L TFNS++  +CK+G +E   +++  + + GL  DV +Y 
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            L+    K G + E+  +   + + G  P    +  +I    + G  + A    ++M+ +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G   N   +T LI    + G   +A   + EM + G+ P   C++ + +G    G+ DLA
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 317 EKI 319
            ++
Sbjct: 241 REL 243



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 147/311 (47%), Gaps = 5/311 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++P  +S   ++  + K G +  ++ VF++ T       V+ + SL+ A C+      A 
Sbjct: 112 LAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAV 171

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL+ +M  +G   ++ T+  L++ +C  G + +A   ++EM   G  P V   + L+ G 
Sbjct: 172 ALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGY 231

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A++++ +M  +    D+ T++++I   CK G ++   ++   + K G+  D 
Sbjct: 232 CKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDA 291

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   +++A  L  N+++ G +P    Y  +I G  + G  + A     E
Sbjct: 292 ITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDE 351

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  KG  P+   Y++LI    +  R  EA   L ++      P +  +D +   +  C K
Sbjct: 352 MIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDAL---MLCCSK 408

Query: 313 HDLAEKIELLE 323
            +    + LL+
Sbjct: 409 AEFKSVVALLK 419



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 56/260 (21%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    +   +++A E+F        Q     Y +L+   C+      A +L   M
Sbjct: 293 TYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEM 352

Query: 79  IRKGFVPDKRTYAILVNA------------------------------------------ 96
           IRKG +PD  TY++L+N                                           
Sbjct: 353 IRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFK 412

Query: 97  --------WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
                   +C  G M+EA +  Q M D+ +        +L+ G    G +  A     +M
Sbjct: 413 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 472

Query: 149 IKQGFVLDLETFNSLIETICKSG---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++ GF  +  +  SL+  + + G   E +  ++   + C L   AD    K LI    K 
Sbjct: 473 LRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDLLTCCPL---ADAEASKALIDLNRKE 529

Query: 206 GMIDEAFRLLHNLVEDGHKP 225
           G +D    +L  +  DG  P
Sbjct: 530 GNVDALIDVLCGMARDGLLP 549


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 140/314 (44%), Gaps = 13/314 (4%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K G   +A  +F++         +  YN ++   C    +  A  L+R M  
Sbjct: 252 SAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE 311

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD  T+++L+NA    GK  EA+E   EM  +G  P     + ++ G      L++
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDA 371

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A++M   M  +G   D+ TF+ LI+  C +  V+  +++ + + + GL A+  TY  LI 
Sbjct: 372 AERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIH 431

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---- 256
              + G ++ A  LL  ++  G  P       ++ G+   G+  DA   F  M+      
Sbjct: 432 GFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDL 491

Query: 257 --GHP-----PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
              HP     P+   Y +LI      G+F EA     EM   GL P +  ++ V DGL  
Sbjct: 492 DASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGL-- 549

Query: 310 CGKHDLAEKIELLE 323
           C +  L E  ++ +
Sbjct: 550 CKQSRLDEATQMFD 563



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 126/299 (42%), Gaps = 11/299 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M P  +  +  T + +I+ F K   +D A  +F       C   V+ ++ L+   C  K 
Sbjct: 344 MLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKR 403

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L+  M R+G V +  TY  L++ +C  G +  A + LQEM   G  P V   + 
Sbjct: 404 VDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNT 463

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVL-----------DLETFNSLIETICKSGEVEFC 176
           L+ GL N G L+ A +M   M K    L           D++T+N LI  +   G+    
Sbjct: 464 LLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEA 523

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E+Y  +   GL  D  TY  +I  + K   +DEA ++  ++   G  P    +  +I G
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             + G+  D    F EM  +G   N   Y  LI    + G    A +   EM   G+ P
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYP 642



 Score =  103 bits (258), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 142/340 (41%), Gaps = 47/340 (13%)

Query: 30  HGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
           HGL     V  A+  F++     C+  V+ + +L+  LC       A AL+ RM+  G  
Sbjct: 154 HGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQ 209

Query: 85  PDKRTYAILVNAWC------------------------------------SSGKMREAQE 108
           P++ TY  +V+  C                                      G+  +AQ 
Sbjct: 210 PNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQN 269

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
              EM +KG +P +   + ++ G  ++G    A++++ +M ++    D+ TF+ LI  + 
Sbjct: 270 LFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G+     E+Y  +   G+  +  TY  +I   SK   +D A R+ + +   G  P   
Sbjct: 330 KEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVI 389

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            ++ +I G     + DD      EM  +G   N   YT LI    + G    A + L EM
Sbjct: 390 TFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEM 449

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
              G+ P     + + DGL N GK  L + +E+ +V  +S
Sbjct: 450 ISSGVCPNVVTCNTLLDGLCNNGK--LKDALEMFKVMQKS 487



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 126/275 (45%), Gaps = 11/275 (4%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM     S    T S++I+ +     VD+ +++ ++ +        + Y +L+   C++ 
Sbjct: 378 LMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLG 437

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--------SDKGF 118
             + A  L++ MI  G  P+  T   L++  C++GK+++A E  + M        +   F
Sbjct: 438 NLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPF 497

Query: 119 N---PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           N   P V+  ++L+ GL+N G    A+++  +M  +G V D  T+NS+I+ +CK   ++ 
Sbjct: 498 NDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDE 557

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +M+ S+   G   DV T+  LI    K G + +   +   +   G       Y  +I 
Sbjct: 558 ATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIH 617

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           G  + G  + A   F EM   G  P+      ++T
Sbjct: 618 GFCQVGNINGALDIFQEMISSGVYPDTITIRNMLT 652



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 132/288 (45%), Gaps = 5/288 (1%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+++F          CV+ +  LL  +  ++      +L R+M  +    +  ++ I
Sbjct: 57  LDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTI 116

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+  +CS  K+  A     +++  GF+P +     L+ GL     +  A    +++ K  
Sbjct: 117 LIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPN 176

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            +     F +L+  +C+ G V   V +   + + GL  +  TY  ++  + K G    A 
Sbjct: 177 VI----AFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 232

Query: 213 RLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            LL  + E    KP   +Y+ II G+++ G+  DA   FSEM+ KG  PN   Y  +I  
Sbjct: 233 NLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMING 292

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               GR+ EA   L EM E  ++P    F ++ + L   GK   AE++
Sbjct: 293 FCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 113/255 (44%), Gaps = 11/255 (4%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    L  +  T + +I  F + G ++ A+++  +  +      V+  N+LL  L
Sbjct: 409 KLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGL 468

Query: 63  CEVKLFHGAYALIRRMIR-----------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           C       A  + + M +               PD +TY IL+    + GK  EA+E  +
Sbjct: 469 CNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYE 528

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +G  P     + ++ GL     L+ A QM + M  +GF  D+ TF +LI   CK G
Sbjct: 529 EMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVG 588

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V   +E++  + + G+ A+  TY+ LI    + G I+ A  +   ++  G  P      
Sbjct: 589 RVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIR 648

Query: 232 PIIKGMFRRGQFDDA 246
            ++ G++ + +   A
Sbjct: 649 NMLTGLWSKEELKRA 663



 Score = 47.0 bits (110), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           P T++   +I+   K   +D A ++F+   +      V+ + +L+   C+V        +
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEV 596

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M R+G V +  TY  L++ +C  G +  A +  QEM   G  P       ++ GL +
Sbjct: 597 FCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWS 656

Query: 135 AGYLESAKQ 143
              L+ A Q
Sbjct: 657 KEELKRAVQ 665



 Score = 38.5 bits (88), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 42/92 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V + +EVF +          + Y +L+   C+V   +GA  + + M
Sbjct: 576 TFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEM 635

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
           I  G  PD  T   ++    S  +++ A + L
Sbjct: 636 ISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 123/265 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ F K G V++A+ V+ +         V  Y +L+   C+      A  ++  M
Sbjct: 575 TYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEM 634

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y  L++ +C  G M  A + L E+ + G +P       ++ G      +
Sbjct: 635 KNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNM 694

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A  +  +MI +G   DL+ + +LI  + K G++ F  E+Y  +   G+  D+ TY +L
Sbjct: 695 EAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVL 754

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G ++ A ++L ++      P   +Y  +I G F+ G   +AF   +EM  KG 
Sbjct: 755 IHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGL 814

Query: 259 PPNRPVYTMLITMCGRGGRFVEAAN 283
            P+   Y +L+    + G     A+
Sbjct: 815 VPDDTTYDILVNGKVKDGNLFSGAS 839



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 142/326 (43%), Gaps = 35/326 (10%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +  A  ++ K      +  V+ YN+++   C+      A  +   M+ KG  P+  
Sbjct: 445 KEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLI 504

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY++L++ +   G    A      M  +   P     ++++ GL  AG    ++  + K+
Sbjct: 505 TYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKL 564

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +++GF+    T+N +I+   K G V   + +Y  +CK+G+  +V TY  LI    K+  +
Sbjct: 565 VQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNM 624

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A +++  +   G +   ++Y  +I G  R+G   +A    SE++  G  PN+ VY+ +
Sbjct: 625 DLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSM 684

Query: 269 IT-----------------MCGRG------------------GRFVEAANYLVEMTEMGL 293
           I+                 M   G                  G+ + A+    EM   G+
Sbjct: 685 ISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGI 744

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P    + ++  GL N G+ + A+KI
Sbjct: 745 MPDLITYSVLIHGLCNKGQLENAQKI 770



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 133/288 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++++ + K G  + A  ++++    N        N ++  LC+      +   ++++
Sbjct: 505 TYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKL 564

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++GF+P   TY  +++ +   G +  A     EM   G +P V     L+ G   +  +
Sbjct: 565 VQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNM 624

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++++M  +G  LD+  + +LI+  C+ G++    ++   + ++GL  +   Y  +
Sbjct: 625 DLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSM 684

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ++ A  L   ++ +G      +Y  +I G+ + G+   A   ++EM  KG 
Sbjct: 685 ISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGI 744

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            P+   Y++LI      G+   A   L +M    +TP    ++ +  G
Sbjct: 745 MPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITG 792



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 126/288 (43%), Gaps = 1/288 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+S++I    + G ++ A   F +      +     Y+ ++ A+C+      A  L+R M
Sbjct: 226 TISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREM 285

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG+VP +  +  ++      GKM EA +   EM   G    V     L++G    G L
Sbjct: 286 RDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDL 345

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA ++ +KM + G   +  T+  +IE  CK+G ++   E+Y  +    +   V     L
Sbjct: 346 DSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSL 405

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA   +EA +L    V  G     + Y  ++  + + G+  +A   + +M  KG 
Sbjct: 406 IRGYLKARSPEEASKLFDEAVACGIANVFT-YNSLLSWLCKEGKMSEACSIWEKMVRKGV 464

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            P+   Y  +I    + G    A    VEM E GL P    + ++ DG
Sbjct: 465 RPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDG 512



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 113/258 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + IE  +  +     +  + ++  + K   +++AV+ FN     +   C+ + N  L  L
Sbjct: 140 RLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSEL 199

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +  +   A  +  +M  KG   D  T ++++ A    GK+ EA+ + +E  +KG     
Sbjct: 200 VKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDA 259

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R   ++++ +       +A  ++ +M  +G+V     F  +I    K G++   V++   
Sbjct: 260 RAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGE 319

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G   +V     L+    K G +D A  L   + E+G  P    YA II+   + G 
Sbjct: 320 MLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGN 379

Query: 243 FDDAFCFFSEMKIKGHPP 260
            D A+  +++MK K   P
Sbjct: 380 MDKAYEIYNQMKNKDISP 397



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ MK   + +       +I+ F + G + NA ++ ++          ++Y+S++   
Sbjct: 629 KVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGF 688

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +++    A  L +RMI +G   D + Y  L++     GK+  A E   EM  KG  P +
Sbjct: 689 RKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDL 748

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+ GL N G LE+A++++  M ++     +  +N+LI    K G ++    ++  
Sbjct: 749 ITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNE 808

Query: 183 VCKLGLCADVSTYKILIPAVSKAG 206
           +   GL  D +TY IL+    K G
Sbjct: 809 MLDKGLVPDDTTYDILVNGKVKDG 832



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 103/246 (41%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           LI    R  F  D R +  L+N++  + ++ +A +    + +K   P +   ++ +  L+
Sbjct: 141 LIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELV 200

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +  A+ + NKM  +G   D  T + +I    + G++E     +      G+  D  
Sbjct: 201 KNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDAR 260

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y I+I AV K      A  LL  + + G  P   ++  +I    ++G+  +A     EM
Sbjct: 261 AYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEM 320

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G P N  V T L+    + G    A     +M E G+ P +  + ++ +     G  
Sbjct: 321 LSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNM 380

Query: 314 DLAEKI 319
           D A +I
Sbjct: 381 DKAYEI 386



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 51/124 (41%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           Q  + +I    K G +  A E++ +  A      ++ Y+ L+  LC       A  ++  
Sbjct: 714 QIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILED 773

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M RK   P    Y  L+      G ++EA     EM DKG  P     D+LV G +  G 
Sbjct: 774 MDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGN 833

Query: 138 LESA 141
           L S 
Sbjct: 834 LFSG 837


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 142/309 (45%), Gaps = 7/309 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVF---NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           T S++I E  K   +  A E     N+  +     C   YNSLL +LC+ K  H A+A+ 
Sbjct: 86  THSMLINELCKADKIQEAQEFLQGMNRTISTRASSC-FSYNSLLNSLCKAKKVHQAFAIF 144

Query: 76  RRMI-RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
             M+  +  VPD  +Y+IL++ +C   ++  A++  ++M D    P V   +  + GL+ 
Sbjct: 145 STMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMR 204

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +  A+ +  +MI  G   D+ T+++LI     + + +   E++ ++   G   +  T
Sbjct: 205 KGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVT 264

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  L+  + K    DEA  L   +VE G  P    Y  ++ G    G+ + A   F EM 
Sbjct: 265 YNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMV 324

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            KGH P+   Y  L+    R G+  EA      M      P +   +++ DGL    + D
Sbjct: 325 SKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLD 384

Query: 315 LAEKIELLE 323
            A  +E+ E
Sbjct: 385 DA--VEVFE 391



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 135/302 (44%), Gaps = 5/302 (1%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P  +S  ++I+ F K   +  A +++ +    NC   V  YN+ L  L        A
Sbjct: 152 SVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADA 211

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   MI  G  PD  TY+ L++ +  + K  +A E  + M  +G  P     + L+ G
Sbjct: 212 QGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHG 271

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L      + A ++  KM+++G   D  T+ +L+   C  G++E  VE++  +   G   D
Sbjct: 272 LCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPD 331

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  Y  L+    +AG   EA +L   +V    KP    +  +I G+ +  + DDA   F 
Sbjct: 332 VVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFE 391

Query: 252 EM-KIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            M +  G  P+   Y  LI  +CG   R  EA     E+  + L+P    F+++ + +  
Sbjct: 392 RMEQDHGCSPDLVTYNSLIFGLCGE-QRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYA 450

Query: 310 CG 311
            G
Sbjct: 451 AG 452



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 131/308 (42%), Gaps = 38/308 (12%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-- 113
           +S++  LC+      A +L+  MI++G+ PD  T+++L+N  C + K++EAQEFLQ M  
Sbjct: 53  HSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNR 112

Query: 114 ------------------------------------SDKGFNPPVRGRDLLVQGLLNAGY 137
                                               S++   P V    +L+ G      
Sbjct: 113 TISTRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDE 172

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A+++  +MI    V ++ T+N+ +  + + G +     +Y  +   G   DV TY  
Sbjct: 173 LGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI   S A   D+A  L   ++  G +P    Y  ++ G+ +  + D+A   F +M  +G
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P++  YT L+      G+  +A     EM   G  P    ++ +  G    GK   A 
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAR 352

Query: 318 KIELLEVS 325
           ++  + VS
Sbjct: 353 QLFQVMVS 360



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 16/242 (6%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL---LVQGLLNAGYLESAKQMV 145
            +   +   C SGK+ +A E  + M +   +           ++Q L  AG ++SA  ++
Sbjct: 13  AWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLL 72

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST-------YKIL 198
             MIK+G+  D+ T + LI  +CK+ +++   E        G+   +ST       Y  L
Sbjct: 73  ETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQ-----GMNRTISTRASSCFSYNSL 127

Query: 199 IPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           + ++ KA  + +AF +   +V E    P    Y+ +I G  +  +   A   + +M    
Sbjct: 128 LNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN 187

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y   +    R GR  +A     EM   G +P    +  +  G     KHD A 
Sbjct: 188 CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAH 247

Query: 318 KI 319
           ++
Sbjct: 248 EL 249



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 36/193 (18%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K    D A E+F K     C    + Y +LL+  C V     A  +   M
Sbjct: 264 TYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD   Y  L+  +  +GK  EA++  Q M  +   P     ++++ GL  A  L
Sbjct: 324 VSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRL 383

Query: 139 ESAKQMVNKMIK-QGFVLDLET-----------------------------------FNS 162
           + A ++  +M +  G   DL T                                   FN 
Sbjct: 384 DDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNV 443

Query: 163 LIETICKSGEVEF 175
           L+E +  +G   F
Sbjct: 444 LLEAMYAAGHKPF 456


>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
          Length = 800

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 135/295 (45%), Gaps = 10/295 (3%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLL 59
           M+  I   +   L         +I      G    AVE F++    F C+    +YN++L
Sbjct: 123 MYDAIADAQAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVL 182

Query: 60  FALCE----VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
             L      V L   A AL  RM+  G +P++ TY +L++  C  G   +A +   EM  
Sbjct: 183 RVLVASGGAVPL---ALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMIS 239

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           +G  P V+   +L+  + NAG L+ A+ +++ M  +G   D  T+N+ +  +CK+G V+ 
Sbjct: 240 RGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDE 299

Query: 176 CVEMYYSVCKLG-LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPI 233
            +E   ++   G     +  Y  LI  +  AG  +E F+    ++E     P   LY  +
Sbjct: 300 AIERLEALRHTGTFVLGLKGYSCLIDGLFLAGRYEEGFQCYMEVLEQADVSPDIVLYTIM 359

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           I+G    G+ +DAF FF EMK KG  P+   Y  L+      G    A + + EM
Sbjct: 360 IRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGARSLMSEM 414



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 15/284 (5%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP  +  +++I    + G  ++A   F++            YN+LL ALC+     GA 
Sbjct: 349 VSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGDLDGAR 408

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +L+  M+R   V D  TY  ++   C    + EA +    M + G +P V   ++L+ GL
Sbjct: 409 SLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGL 468

Query: 133 LNAGYLESAKQMVNKM-------------IKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
             A  LE A+ +  KM             +    V D ET   L+E++C+SG+V    ++
Sbjct: 469 YRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKL 528

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   G+  DV TY  L+  + K   +D A RL   L   G       Y  +I  + R
Sbjct: 529 LRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLR 588

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
             +++DA   F ++   G  P+ P+Y  ++    R  +  +A N
Sbjct: 589 AHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAIN 632



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 151/340 (44%), Gaps = 52/340 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G   +A+++F++  +      V  +  LL ++C       A  L+  M
Sbjct: 213 TYNVLIHGLCKRGTPVDALKLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSM 272

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAG- 136
             KG  PD+ TY   ++  C +G++ EA E L+ +   G F   ++G   L+ GL  AG 
Sbjct: 273 EDKGCPPDEVTYNAFLSGLCKAGRVDEAIERLEALRHTGTFVLGLKGYSCLIDGLFLAGR 332

Query: 137 -------YLESAKQ----------------------------MVNKMIKQGFVLDLETFN 161
                  Y+E  +Q                              ++M ++GF  D   +N
Sbjct: 333 YEEGFQCYMEVLEQADVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYN 392

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
           +L++ +C +G+++    +   + +  +  D+ TY  +I  + K  ++DEA ++   +VE 
Sbjct: 393 TLLKALCDAGDLDGARSLMSEMVRNNVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEV 452

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP--------------NRPVYTM 267
           G  P    Y  +I G++R  + ++A   F +M++  +P               +  +  +
Sbjct: 453 GCHPSVMTYNVLIDGLYRAHRLEEARMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKL 512

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           + +MC + G+ ++A   L  + + G+ P    ++ + +GL
Sbjct: 513 VESMC-QSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGL 551



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 13/216 (6%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+ +   T + +I    K  LVD A++VF+      C   V+ YN L+  L        A
Sbjct: 418 NVVLDIHTYTTMIIGLCKEQLVDEAMQVFDGMVEVGCHPSVMTYNVLIDGLYRAHRLEEA 477

Query: 72  YALIRRM-------------IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L  +M             +    V D  T   LV + C SG++ +A + L+ + D G 
Sbjct: 478 RMLFYKMEVGNNPSLFLRLTLGANQVRDSETLQKLVESMCQSGQVLKAYKLLRGIIDSGV 537

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   + L+ GL     L+ A ++  ++  +GF LD  T+ +LI+++ ++      + 
Sbjct: 538 VPDVVTYNTLLNGLCKVRNLDGALRLFRELQVKGFPLDEITYGTLIDSLLRAHRYNDALT 597

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
           ++  +   G    +  Y  ++ ++ +   + +A  L
Sbjct: 598 LFQDILHSGGTPSMPIYNSMMRSLCRMQKLSQAINL 633



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 3/210 (1%)

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIET 166
           + + +    G  PP    + L+    +AG    A +  ++M  + G       +N+++  
Sbjct: 125 DAIADAQAAGLQPPTAAFEALIFAHASAGRHHEAVEAFSRMEGEFGCRPTTFVYNAVLRV 184

Query: 167 ICKSG-EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
           +  SG  V   + +Y  +   G   + +TY +LI  + K G   +A +L   ++  G  P
Sbjct: 185 LVASGGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITP 244

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               +  ++  M   GQ  +A      M+ KG PP+   Y   ++   + GR  EA   L
Sbjct: 245 NVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVDEAIERL 304

Query: 286 VEMTEMGLTPIS-RCFDLVTDGLKNCGKHD 314
             +   G   +  + +  + DGL   G+++
Sbjct: 305 EALRHTGTFVLGLKGYSCLIDGLFLAGRYE 334



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 2/123 (1%)

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           V+  G +  A  L + +V  G  P  + Y  +I G+ +RG   DA   F EM  +G  PN
Sbjct: 186 VASGGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDALKLFDEMISRGITPN 245

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
              +T+L++     G+  EA N L  M + G  P    ++    GL   G+ D  E IE 
Sbjct: 246 VKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSGLCKAGRVD--EAIER 303

Query: 322 LEV 324
           LE 
Sbjct: 304 LEA 306



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 5/214 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +TL  ++E   + G V  A ++            V+ YN+LL  LC+V+   GA  L R 
Sbjct: 507 ETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLFRE 566

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +  KGF  D+ TY  L+++   + +  +A    Q++   G  P +   + +++ L     
Sbjct: 567 LQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTPSMPIYNSMMRSLCRMQK 626

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL---CADVST 194
           L  A  +    + + +  +L   + +I +  K  E     E    + K+       +   
Sbjct: 627 LSQAINLWFDHLPRKY--NLLAQDEVISSARKKFEEGCLHEAVRELIKIDQEYGSVNSCP 684

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           Y I +  + +AG I++A ++ H L E G    P+
Sbjct: 685 YTIWLIGLIQAGRIEDALKIFHILEESGIDITPA 718


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 126/256 (49%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+V     A  +   M  +G +P+  +Y+ LV+ +C +GK+ E++    EM D+G  P
Sbjct: 71  GLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQP 130

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L+  L   G +  AK+++   I++G +LDL T+NSLI+  CK G++    +++
Sbjct: 131 NLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLF 190

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            S+   G   +  +Y ILI    K   ++EA  L + + + G +P    Y+ ++ G+ + 
Sbjct: 191 LSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQT 250

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+  DA   F  MK  G   +  +Y + +    + G   EA     E+           +
Sbjct: 251 GKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESY 310

Query: 301 DLVTDGLKNCGKHDLA 316
             + DGL   GK ++A
Sbjct: 311 SRLIDGLCKAGKVEIA 326



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 128/283 (45%), Gaps = 19/283 (6%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY-----------------AILVNAWC 98
           N L   LC +       A +  ++R+G++PD  TY                  I+++  C
Sbjct: 14  NILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLC 73

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             G   EA+E  +EM  +G  P V     LV G   AG LE +K++ N+M+ QG   +L 
Sbjct: 74  KVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLV 133

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
            FN LI+ +CK G+V    ++     + G+  D+ TY  LI    K G +  A +L  ++
Sbjct: 134 QFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSM 193

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G +     Y  +I G  +  + ++A   ++EM   G  PN   Y+ L+T   + G+ 
Sbjct: 194 PSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKV 253

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            +A      M   G++  S  + +  DGL  C    L E +EL
Sbjct: 254 GDANKLFGVMKASGISVDSCIYVIFLDGL--CKNGVLFEAMEL 294



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 125/274 (45%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +II+   K G  D A E+F +  A      V+ Y+SL+   C       +  L   M+ +
Sbjct: 67  IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQ 126

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P+   + +L++  C  GK+ EA++ L+    +G    +   + L+ G    G L SA
Sbjct: 127 GVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSA 186

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           +++   M  +G   +  ++  LI   CK  +VE  + +Y  + ++G   +V TY  L+  
Sbjct: 187 RKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTG 246

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + + G + +A +L   +   G      +Y   + G+ + G   +A   F+E+K      +
Sbjct: 247 LLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLD 306

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              Y+ LI    + G+   A  +  ++++ GL P
Sbjct: 307 FESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQP 340



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 7/321 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +  +  + S ++  F   G ++ +  +FN+      Q  ++ +N L+  LC+ 
Sbjct: 86  EEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKE 145

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L+   I++G + D  TY  L++ +C  G +  A++    M  KG        
Sbjct: 146 GKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISY 205

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ G      +E A  + N+M + G   +++T+++L+  + ++G+V    +++  +  
Sbjct: 206 TILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKA 265

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D   Y I +  + K G++ EA  L + L     K     Y+ +I G+ + G+ + 
Sbjct: 266 SGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEI 325

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE----MTEMGLTPISRCFD 301
           A+ FF ++  +G  PN     ++I    R  + V+ AN L E    M E G TP    ++
Sbjct: 326 AWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQ-VDKANILFEKMEKMEENGCTPDIITYN 384

Query: 302 LVTDGLKNCGKHDLAEKIELL 322
            +  G   C  + L E + LL
Sbjct: 385 TLLRGF--CESNKLEEVVNLL 403



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 111/238 (46%), Gaps = 3/238 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G + +A ++F    +  C+   + Y  L+   C++     A  L   M
Sbjct: 169 TYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEM 228

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  P+ +TY+ L+     +GK+ +A +    M   G +       + + GL   G L
Sbjct: 229 PQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVL 288

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ N++    F LD E+++ LI+ +CK+G+VE   E +  + + GL  +V T  I+
Sbjct: 289 FEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIM 348

Query: 199 IPAVSKAGMIDEA---FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           I    +   +D+A   F  +  + E+G  P    Y  +++G     + ++      +M
Sbjct: 349 IHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 13/196 (6%)

Query: 1   MWKTIELMKPYN----LSVSP--QTLSLIIEEFGKHGLVDNAVEVFN--KCTAFNCQQCV 52
           +WK  E M  YN    +   P  +T S ++    + G V +A ++F   K +  +   C+
Sbjct: 215 IWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCI 274

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
             Y   L  LC+  +   A  L   +    F  D  +Y+ L++  C +GK+  A EF ++
Sbjct: 275 --YVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQ 332

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK---QGFVLDLETFNSLIETICK 169
           +S +G  P V   ++++ G      ++ A  +  KM K    G   D+ T+N+L+   C+
Sbjct: 333 LSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCE 392

Query: 170 SGEVEFCVEMYYSVCK 185
           S ++E  V + + + K
Sbjct: 393 SNKLEEVVNLLHKMFK 408



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 18/207 (8%)

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M   G +P +   ++L   L N   +      +  ++++G++ D+ T+N+LI+ +C+   
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +        + C            I+I  + K G  DEA  +   +   G  P    Y+ 
Sbjct: 61  ISV------ATC------------IIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSS 102

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G    G+ +++   F+EM  +G  PN   + +LI +  + G+ +EA   L    + G
Sbjct: 103 LVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRG 162

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +      ++ + DG    G    A K+
Sbjct: 163 IILDLVTYNSLIDGFCKIGDLSSARKL 189



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 78/152 (51%), Gaps = 3/152 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   +MK   +SV      + ++   K+G++  A+E+FN+  ++N +     Y+ L+  L
Sbjct: 258 KLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGL 317

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ---EFLQEMSDKGFN 119
           C+      A+   +++ ++G  P+  T  I+++ +C   ++ +A    E +++M + G  
Sbjct: 318 CKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCT 377

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           P +   + L++G   +  LE    +++KM K+
Sbjct: 378 PDIITYNTLLRGFCESNKLEEVVNLLHKMFKR 409



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 19/158 (12%)

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR------- 239
           GL  D+ T  IL   +     + E    +  ++  G+ P    Y  +IKG+ R       
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64

Query: 240 ----------RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
                      G  D+A   F EMK +G  PN   Y+ L+      G+  E+     EM 
Sbjct: 65  TCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMV 124

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           + G+ P    F+++ D L  C +  + E  +LLEV+++
Sbjct: 125 DQGVQPNLVQFNVLIDIL--CKEGKVIEAKKLLEVTIQ 160


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 136/307 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + +++   L+    T   +I   G HG  + A  +F +      +  +  +N+LL     
Sbjct: 304 LSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAR 363

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A ++I  M + G  PD+ TY +LV+A+ + G+   A+  L++M  +   P    
Sbjct: 364 KGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFI 423

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++    + G  +   +++ +M       D   +N +I+T  K   ++  +E Y  + 
Sbjct: 424 FSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRML 483

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+  DV T+  LI    K G  D A  L   + E G+ P P+ Y  +I  +  + ++D
Sbjct: 484 SEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWD 543

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +      +M+ +G  PN   YT L+ + G  GRF +A + L  M   GL P +  ++ + 
Sbjct: 544 EVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALI 603

Query: 305 DGLKNCG 311
           +     G
Sbjct: 604 NAFAQRG 610



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 119/275 (43%), Gaps = 12/275 (4%)

Query: 2   W-KTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W KT E+   MK  N+       +++I+ FGK   +D+A+E +++  +   +  V+ +N+
Sbjct: 437 WQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNT 496

Query: 58  LLFALCEVKLFHG----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           L+   C  K  HG    A  L   M  +G++P   TY I++N+     K  E +  L +M
Sbjct: 497 LID--CHRK--HGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKM 552

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G  P V     LV    ++G    A   +  M   G       +N+LI    + G  
Sbjct: 553 QSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLS 612

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E  V  Y  +   GL   +     LI A  +     EAF +L  + E+  KP    Y  +
Sbjct: 613 EQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTL 672

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +K + R  +FD     + EM + G  P+     ML
Sbjct: 673 MKALIRVDKFDKVPAVYEEMILSGCTPDGKARAML 707



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 124/305 (40%), Gaps = 2/305 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L+ II  F K G  + A+   +   A         + +++ AL        A A+   M 
Sbjct: 284 LNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMK 343

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P  + +  L+  +   G ++EA+  + EM   G +P      LLV    N G  E
Sbjct: 344 EGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWE 403

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           SA+ ++ +M  +    +   F+ ++ +    GE +   E+   +    +  D   Y ++I
Sbjct: 404 SARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMI 463

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K   +D A      ++ +G +P    +  +I    + G  D A   F EM+ +G+ 
Sbjct: 464 DTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYL 523

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P    Y ++I   G   ++ E    L +M   GL P    +  + D   + G+ +  + I
Sbjct: 524 PCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFN--DAI 581

Query: 320 ELLEV 324
           + LE 
Sbjct: 582 DCLEA 586



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 119/297 (40%), Gaps = 2/297 (0%)

Query: 14  SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +V P T   S I+  +   G      EV  +    N +     YN ++    +      A
Sbjct: 416 NVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHA 475

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
                RM+ +G  PD  T+  L++     G    A E  +EM ++G+ P     ++++  
Sbjct: 476 METYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINS 535

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L      +  K ++ KM  QG + ++ T+ +L++    SG     ++   ++   GL   
Sbjct: 536 LGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPS 595

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            + Y  LI A ++ G+ ++A      ++ DG +P       +I       +  +AF    
Sbjct: 596 ATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQ 655

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            MK     P+   YT L+    R  +F +      EM   G TP  +   ++   L+
Sbjct: 656 YMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTPDGKARAMLRSALR 712



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 137/356 (38%), Gaps = 43/356 (12%)

Query: 2   WKTIELMKPYNLSVSPQTL-SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +  +  ++ +NL  S + L S++I   G+   +  A  +  K T        L YN+L+ 
Sbjct: 163 YAVVSWLQRHNLCFSYELLYSILIHALGRSEKLYEAFILSQKQTL-----TPLTYNALIG 217

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA------------------------ 96
           A         A  L+ RM + GF  D   Y++++ +                        
Sbjct: 218 ACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKI 277

Query: 97  -------------WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
                        +  +G    A  FL  +   G NP       ++  L N G  E A+ 
Sbjct: 278 ELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEA 337

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +  +M + G    ++ FN+L++   + G ++    +   + K GL  D  TY +L+ A +
Sbjct: 338 IFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYA 397

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             G  + A  LL  +     +P   +++ I+     RG++   F    EMK     P+R 
Sbjct: 398 NVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRH 457

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            Y ++I   G+      A      M   G+ P    ++ + D  +  G HD A ++
Sbjct: 458 FYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAEL 513


>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
 gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Cucumis sativus]
          Length = 834

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 4/273 (1%)

Query: 1   MWKTIEL----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           M++ I+L    MK   LSV+ Q  + II+   K G    A +   + +   C+  ++ YN
Sbjct: 293 MFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYN 352

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C       A  L+ + IR+G  P+K TY  LV+ +C  G+  +A ++L EMS  
Sbjct: 353 TLINHFCSRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTS 412

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G    +     L+ GL+ AG +++A  + ++M+ +G + D   +N L+  + K G++   
Sbjct: 413 GLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMA 472

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             M   +    +  D   Y  L+    + G +DEA +L   ++E G  P    Y  +IKG
Sbjct: 473 KVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKG 532

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             + G  D+A     +M+   H P+   ++ +I
Sbjct: 533 FSKSGMMDNAILCIDKMRRAHHVPDIFTFSTII 565



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 137/308 (44%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++ V   T S++++     G +++ +++        C   ++ YN+L+   C+      A
Sbjct: 203 DICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVFYNTLIDGYCKKGEVESA 262

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           Y L +++  KGF+P  +T+  LVN +C  G        L EM D+G +  V+  + ++  
Sbjct: 263 YKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDA 322

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G+   AK  + +M +     DL T+N+LI   C  GEVE   ++     + GL  +
Sbjct: 323 RYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLEQTIRRGLAPN 382

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  L+    K G   +A   L  +   G +     Y  +I G+   G+ D A     
Sbjct: 383 KLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRD 442

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  +G  P+  +Y +L+    + G+   A   L EM +  + P +  +  + DG    G
Sbjct: 443 RMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHG 502

Query: 312 KHDLAEKI 319
             D A+K+
Sbjct: 503 NLDEAKKL 510



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 144/321 (44%), Gaps = 5/321 (1%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFAL 62
           T+E MK      + + LS ++  +   GLVD A+EV++      N        NSLL  L
Sbjct: 120 TLEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVVKLHNSLPSTYACNSLLNLL 179

Query: 63  CEVKLFHGAYALIRRMIRK----GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
            + +    A+ L   MI +        D  T +I+V   C  G++ +  + ++    KG 
Sbjct: 180 VKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGC 239

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +   + L+ G    G +ESA ++  K+  +GF+  L+TF SL+   CK G  E    
Sbjct: 240 VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDL 299

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +   GL  +V  Y  +I A  K G   +A   L  + E+  +P    Y  +I    
Sbjct: 300 LLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEPDLVTYNTLINHFC 359

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            RG+ ++A     +   +G  PN+  YT L+    + G + +A +YL+EM+  GL     
Sbjct: 360 SRGEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMI 419

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            +  +  GL   G+ D A  I
Sbjct: 420 SYGALIHGLVVAGEVDTALTI 440



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 121/267 (45%), Gaps = 7/267 (2%)

Query: 11  YNLSVSPQTLSLIIEEFGK--HGLV-----DNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           Y + +S   L + +  +G   HGLV     D A+ + ++           +YN L+  L 
Sbjct: 405 YLIEMSTSGLEVDMISYGALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLF 464

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  ++  M+ +   PD   YA LV+ +   G + EA++  Q + +KG +P V 
Sbjct: 465 KKGKLSMAKVMLTEMLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVV 524

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           G +++++G   +G +++A   ++KM +   V D+ TF+++I+   K   +   ++++  +
Sbjct: 525 GYNVMIKGFSKSGMMDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLM 584

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K     +V TY  LI    + G    A +L   +   G KP    Y+ +I    +  + 
Sbjct: 585 VKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKL 644

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             A  +F  M I    PN   +  L+ 
Sbjct: 645 GKAVSYFELMLINKCTPNDAAFHYLVN 671



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 16/264 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II+ + K   ++  +++F      NC+  V+ Y SL+   C       A  L   M
Sbjct: 560 TFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSMM 619

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
              G  P   TY+IL+ ++C   K+ +A  + + M      P       LV G  N    
Sbjct: 620 RSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELMLINKCTPNDAAFHYLVNGFTNTKAT 679

Query: 136 -------GYLESAKQM----VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
                     E+++ M     ++MI  G+      +N ++  +C+   V+  +++   + 
Sbjct: 680 AVSREPNNLHENSRSMFEDFFSRMIGDGWTQKAAAYNCILICLCQQRMVKTALQLRNKML 739

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GLC+D  ++  LI  +   G   E   ++   + +G       Y+  +      G   
Sbjct: 740 AFGLCSDAVSFVALIHGICLEGNSKEWRNMISCDLNEGELQIALKYSLELDKFIPEGGIS 799

Query: 245 DAFCFFSEMKIKGH-PPNRPVYTM 267
           +A      M IKG+  PN+ +  +
Sbjct: 800 EASGILQAM-IKGYVSPNQDLNNL 822



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 15/262 (5%)

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN--PPVRGRDLLVQGL 132
           +  M  K  +P +   + ++ A+   G + +A E    +  K  N  P     + L+  L
Sbjct: 121 LEEMKTKETIPTREALSDVLCAYADVGLVDKALEVYHGVV-KLHNSLPSTYACNSLLNLL 179

Query: 133 LNAGYLESAKQMVNKMIKQG----FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +    +E+A Q+ ++MI +       +D  T + +++ +C  G +E  +++  S    G 
Sbjct: 180 VKHRRIETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGC 239

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             ++  Y  LI    K G ++ A++L   L   G  P    +  ++ G  + G F+    
Sbjct: 240 VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDL 299

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT-DGL 307
              EMK +G   N  +Y  +I    + G  ++A + L EM+E    P     DLVT + L
Sbjct: 300 LLLEMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMSENCCEP-----DLVTYNTL 354

Query: 308 KN--CGKHDLAEKIELLEVSLR 327
            N  C + ++ E  +LLE ++R
Sbjct: 355 INHFCSRGEVEEAEKLLEQTIR 376



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 3/228 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   N++      + +++ F +HG +D A ++F           V+ YN ++    +  +
Sbjct: 479 MLDQNIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGM 538

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   I +M R   VPD  T++ +++ +     M    +    M  +   P V     
Sbjct: 539 MDNAILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTS 598

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G  + A+++ + M   G    + T++ LI + CK  ++   V  Y+ +  + 
Sbjct: 599 LINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKAVS-YFELMLIN 657

Query: 188 LCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
            C  + + +  L+   +         R  +NL E+    F   ++ +I
Sbjct: 658 KCTPNDAAFHYLVNGFTNTKAT-AVSREPNNLHENSRSMFEDFFSRMI 704


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  117 bits (294), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T   +I  + K G VD AV+VF++  T    +   ++YN+L+   C+      A     R
Sbjct: 223 TYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDR 282

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G      TY +LV+A    G+  EA E ++EM  KG    V   ++L+ G    G 
Sbjct: 283 MVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGN 342

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A ++   M ++G    + T+ SLI  + K G+V+   +++    + G+  D+  Y  
Sbjct: 343 VKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNA 402

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI + S +G ID AF ++  + +    P    Y  +++G+   G+ D+A     EM  +G
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  LI+     G   +A     EM   G  P    ++ +  GL   G+ D AE
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 318 KI 319
            +
Sbjct: 523 NM 524



 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 135/295 (45%), Gaps = 2/295 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P+ +  + +I  +   G +D A+   ++         V  YN L+ AL        AY
Sbjct: 253 VKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAY 312

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M  KG   D  TY IL+N  C  G +++A E  + MS +G    V     L+  L
Sbjct: 313 ELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYAL 372

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++   ++ ++ +++G   DL  +N+LI +   SG ++   E+   + K  +  D 
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDD 432

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+  +   G +DEA +L+  + + G +P    Y  +I G   +G   DA    +E
Sbjct: 433 VTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNE 492

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           M  KG  P    Y  LI    + G+  +A N + EM E G+TP    +  + +GL
Sbjct: 493 MMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 118/236 (50%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L++   T +++I    K G V  A+E+F   +    +  V+ Y SL++A
Sbjct: 312 YELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 371

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +         L    +R+G  PD   Y  L+N+  +SG +  A E + EM  K   P 
Sbjct: 372 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++GL   G ++ A++++++M K+G   DL T+N+LI      G+V+  + +  
Sbjct: 432 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 491

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K G  D+A  ++  +VE+G  P  S Y  +I+G+
Sbjct: 492 EMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGL 547



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 143/364 (39%), Gaps = 86/364 (23%)

Query: 18  QTLSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++LSL I     H L+       A  +F          C   +N +L  LC       A 
Sbjct: 115 KSLSLPISTASLHPLLSALPSAPAFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARAL 174

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--------- 123
            L+R+M R    P+  TY  ++  +CS G+++ A + ++EM ++G   P +         
Sbjct: 175 ELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISG 230

Query: 124 ----GR------------------------DLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
               GR                        + L+ G  + G L++A    ++M+++G  +
Sbjct: 231 WCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAM 290

Query: 156 DLETFNSLIETI-----------------------------------CKSGEVEFCVEMY 180
            + T+N L+  +                                   CK G V+  +E++
Sbjct: 291 TVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIF 350

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++ + G+ A V TY  LI A+SK G + E  +L    V  G +P   LY  +I      
Sbjct: 351 ENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTS 410

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G  D AF    EM+ K   P+   Y  L+      GR  EA   + EMT+ G+ P     
Sbjct: 411 GNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP----- 465

Query: 301 DLVT 304
           DLVT
Sbjct: 466 DLVT 469



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 96/185 (51%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K G V    ++F++      +  ++LYN+L+ +         A+ ++  M
Sbjct: 364 TYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEM 423

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +K   PD  TY  L+   C  G++ EA++ + EM+ +G  P +   + L+ G    G +
Sbjct: 424 EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDV 483

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ N+M+ +GF   L T+N+LI+ +CK+G+ +    M   + + G+  D STY  L
Sbjct: 484 KDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISL 543

Query: 199 IPAVS 203
           I  ++
Sbjct: 544 IEGLT 548



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 73/150 (48%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I      G +D A E+  +          + YN+L+  LC +     A  LI  M ++G
Sbjct: 403 LINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRG 462

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L++ +   G +++A     EM +KGFNP +   + L+QGL   G  + A+
Sbjct: 463 IQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAE 522

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            MV +M++ G   D  T+ SLIE +    E
Sbjct: 523 NMVKEMVENGITPDDSTYISLIEGLTTEDE 552


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 5/315 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCE 64
           EL +  +   +P     +I    K  LV+ A+ +++K   A   Q C    N LL+ L +
Sbjct: 104 ELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTIQAC----NVLLYVLVK 159

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F   + +   MI  G  P   T+  L++  C  G +  AQE   EM  KG  P V  
Sbjct: 160 TGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIV 219

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L++GL +   +E A+ M   M + G   ++ T+N+L++  CK    +  + +Y  + 
Sbjct: 220 YTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDML 279

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  DV T+ ILI  + K G +  A  L  N+++    P  ++Y  +I    + G   
Sbjct: 280 GEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVS 339

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F E++     P+   Y++LI       R  EA N   +MT+ G+   S  ++ + 
Sbjct: 340 EAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLI 399

Query: 305 DGLKNCGKHDLAEKI 319
           DG    GK D A +I
Sbjct: 400 DGCCKEGKMDKALEI 414



 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 151/356 (42%), Gaps = 37/356 (10%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W+  E M    LS S  T   +I+   + G +  A E+F++         V++Y  L+ 
Sbjct: 166 LWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIR 225

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A ++ R M   G  P+  TY  L++ +C     ++A    Q+M  +G  P
Sbjct: 226 GLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVP 285

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+ GL   G +++A+ +   MIK     ++  +NSLI+  CK G+V   + ++
Sbjct: 286 DVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALF 345

Query: 181 --------------YSVCKLGLC---------------------ADVSTYKILIPAVSKA 205
                         YS+   GLC                     A+  TY  LI    K 
Sbjct: 346 LELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKE 405

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D+A  +   + E+G +P    ++ +I G  +      A   +SEM IK   P+   Y
Sbjct: 406 GKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTY 465

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           T +I    + G   EA     +M + G+TP       + DGL  C    +++ +EL
Sbjct: 466 TAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL--CKDGKISDALEL 519



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 139/303 (45%), Gaps = 15/303 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++I+   K G +  A  +F     F+    + +YNSL+ A C+V     A AL   +
Sbjct: 289 TFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLEL 348

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R    PD  TY+IL+   CS  +  EA    ++M+ +G        + L+ G    G +
Sbjct: 349 ERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKM 408

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++M + G   ++ TF++LI+  CK   ++  + +Y  +    L  DV TY  +
Sbjct: 409 DKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAM 468

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + EA +L  +++++G  P     + ++ G+ + G+  DA   F+E KI+  
Sbjct: 469 IDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTE-KIEFQ 527

Query: 259 PP--------------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            P              N   YT LI    + G+F +A     +M   GL P    + ++ 
Sbjct: 528 TPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVML 587

Query: 305 DGL 307
            GL
Sbjct: 588 RGL 590



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 30/260 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T S++I         + A  +F K T        + YNSL+   C+      A 
Sbjct: 353 VSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKAL 412

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M   G  P+  T++ L++ +C    ++ A     EM  K  +P V     ++ G 
Sbjct: 413 EICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGH 472

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A ++ + M+  G   +  T + L++ +CK G++   +E++            
Sbjct: 473 CKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF------------ 520

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCF 249
            T KI            E      N+   G KP  +    Y  +I G+ + GQF  A   
Sbjct: 521 -TEKI------------EFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKL 567

Query: 250 FSEMKIKGHPPNRPVYTMLI 269
           FS+M+  G  P+  +Y +++
Sbjct: 568 FSDMRRYGLQPDEVIYVVML 587



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 111/278 (39%), Gaps = 24/278 (8%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    +  +  T + +I+   K G +D A+E+ ++ T    +  V+ +++L+   C++
Sbjct: 381 EKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKI 440

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           +    A  +   M+ K   PD  TY  +++  C  G M+EA +   +M D G  P     
Sbjct: 441 RNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTI 500

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL   G +  A               LE F   IE       V+          K
Sbjct: 501 SCLLDGLCKDGKISDA---------------LELFTEKIEFQTPRCNVD------AGGSK 539

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             L   V+ Y  LI  + + G   +A +L  ++   G +P   +Y  +++G+F+      
Sbjct: 540 PSLTNHVA-YTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYI-- 596

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                ++M   G  PN  V+ +L       G    A N
Sbjct: 597 LMMLHADMLKFGVIPNSAVHVILCECYQESGFLKSAQN 634


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 138/319 (43%), Gaps = 34/319 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F+K         +  Y SL+ +LC +  +     L+ +MI   
Sbjct: 215 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD   ++ +V+A C  GK+ EA + +  M  +G  P V   + L+ G      ++ A 
Sbjct: 275 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICK--------------------------------- 169
           ++ + M+  G+  ++ ++N+LI   CK                                 
Sbjct: 335 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXC 394

Query: 170 -SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             G ++  + +++ +   G   D++TY+IL+  + K   +DEA  LL  +      P   
Sbjct: 395 HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQ 454

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y  +I GM R G+ + A   FS +  KG  PN   YT++I    R G   EA    +EM
Sbjct: 455 IYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEM 514

Query: 289 TEMGLTPISRCFDLVTDGL 307
              G +P    ++ +T GL
Sbjct: 515 DGNGCSPDGCTYNTITQGL 533



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 138/306 (45%), Gaps = 3/306 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G + +A+ +F+K      Q  V+ Y +L+  LC+V   + A  L+R M
Sbjct: 141 TFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSM 200

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD   Y  ++++ C   ++ EA     +M  +G +P +     L+  L N    
Sbjct: 201 EQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEW 260

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    ++N+MI    + D+  F+++++ +CK G++    ++   +   G+  +V TY  L
Sbjct: 261 KHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNAL 320

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +DEA ++   +V +G+ P    Y  +I G  +  + D A   F EM  K  
Sbjct: 321 MDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 380

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  L+  C   GR  +A     EM   G  P    + ++ D L  C K  L E 
Sbjct: 381 IPNTVTYNTLMHXC-HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYL--CKKSHLDEA 437

Query: 319 IELLEV 324
           + LL+ 
Sbjct: 438 MALLKT 443



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 131/297 (44%), Gaps = 5/297 (1%)

Query: 2   WK--TIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  T  L +  N  + P  +  S +++   K G +  A +V +       +  V+ YN+
Sbjct: 260 WKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNA 319

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+  G+ P+  +Y  L+N +C   +M +A    +EM  K 
Sbjct: 320 LMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE 379

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     + L+    + G L+ A  + ++M+  G + DL T+  L++ +CK   ++  +
Sbjct: 380 LIPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAM 438

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    +  D+  Y I+I  + +AG ++ A  +  NL   G +P    Y  +I G+
Sbjct: 439 ALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGL 498

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            RRG  D+A   F EM   G  P+   Y  +     +    + A   L EM   G +
Sbjct: 499 CRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFS 555



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 142/316 (44%), Gaps = 6/316 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           LS+ P   SL    F    L    +D+A+  FN+    +     + +N LL ++ + K +
Sbjct: 26  LSLPPYFSSLSHNRFHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQY 85

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
              ++L  +M   G  PD  T  IL+N++C   ++  A   L ++   G  P       L
Sbjct: 86  PTVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTL 145

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G +  A  + +KMI +GF  ++ T+ +LI  +CK G     + +  S+ +   
Sbjct: 146 IRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNC 205

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV  Y  +I ++ K   + EAF L   +V  G  P    Y  +I  +    ++     
Sbjct: 206 QPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTT 265

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             ++M      P+  +++ ++    + G+  EA + +  M   G+ P    ++ + DG  
Sbjct: 266 LLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDG-- 323

Query: 309 NCGKHDLAEKIELLEV 324
           +C + ++ E +++ + 
Sbjct: 324 HCLQSEMDEAVKVFDT 339



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 1/239 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D AV+VF+          V+ YN+L+   C+++    A  L   M +K  +P+  TY  
Sbjct: 330 MDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNT 389

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C  G++++A     EM   G  P +    +L+  L    +L+ A  ++  +    
Sbjct: 390 LMHX-CHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN 448

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D++ +  +I+ +C++GE+E   +++ ++   GL  +V TY I+I  + + G++DEA 
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEAN 508

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +L   +  +G  P    Y  I +G+ +  +   A     EM  +G   +    T+L+ M
Sbjct: 509 KLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEM 567



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 117/288 (40%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +     TL+++I  F     +  A  V  K      Q     + +L+  LC    
Sbjct: 95  MDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGK 154

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 155 IGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTS 214

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + +KM+ QG   D+ T+ SLI ++C   E +    +   +    
Sbjct: 215 IIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  DV  +  ++ A+ K G I EA  ++  ++  G +P    Y  ++ G   + + D+A 
Sbjct: 275 IMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F  M   G+ PN   Y  LI    +  R  +A     EM +  L P
Sbjct: 335 KVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIP 382



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 91/190 (47%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G + +A+ +F++  A      +  Y  LL  LC+      A AL++ +      PD + Y
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I+++  C +G++  A++    +S KG  P VR   +++ GL   G L+ A ++  +M  
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   D  T+N++ + + ++ E    +++   +   G  ADVST  +L+  +    +   
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDKLDQS 576

Query: 211 AFRLLHNLVE 220
             ++L   V+
Sbjct: 577 VKQILSEFVQ 586



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 68/150 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K   +D A+ +       N    + +Y  ++  +C       A  +   +
Sbjct: 420 TYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL 479

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+ RTY I++N  C  G + EA +   EM   G +P     + + QGLL     
Sbjct: 480 SSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEA 539

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             A Q++ +M+ +GF  D+ T   L+E +C
Sbjct: 540 LRAIQLLQEMLARGFSADVSTTTLLVEMLC 569



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 3/150 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + KTIE     N+    Q  +++I+   + G ++ A ++F+  ++   +  V  Y  ++ 
Sbjct: 440 LLKTIE---GSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMIN 496

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC   L   A  L   M   G  PD  TY  +      + +   A + LQEM  +GF+ 
Sbjct: 497 GLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSA 556

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            V    LLV+ L +    +S KQ++++ ++
Sbjct: 557 DVSTTTLLVEMLCDDKLDQSVKQILSEFVQ 586


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 135/299 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M     S +   +S +++   K G +D+A E+  K   F     + +YN+L+ +LC+   
Sbjct: 321 MVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGD 380

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M      P+  TY+IL++++C SG++  A  +   M   G    V   + 
Sbjct: 381 LDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNS 440

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L +A+ +  +M  +G      TF SLI   CK  +V+   ++Y  +   G
Sbjct: 441 LINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNG 500

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +V T+  LI  +     + EA  L   LVE   KP    Y  +I+G  R G+ D AF
Sbjct: 501 ITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAF 560

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               +M  KG  P+   Y  LI+     GR  +A +++ ++ +  +     C+  +  G
Sbjct: 561 ELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHG 619



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN L+  LC+      A  + R +  KG   D  TY  LV  +C   +     + + 
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMD 319

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM + GF+P       LV GL   G ++ A ++V K+ + GFV +L  +N+LI ++CK G
Sbjct: 320 EMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGG 379

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++    +Y ++  + L  +  TY ILI +  ++G +D A      +++DG       Y 
Sbjct: 380 DLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYN 439

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  + G    A   F EM  KG  P    +T LI+   +  +  +A     +M + 
Sbjct: 440 SLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDN 499

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G+TP    F  +  GL  C  + +AE  EL +
Sbjct: 500 GITPNVYTFTALISGL--CSTNKMAEASELFD 529



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 128/284 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G +D A  +++  +  N +   + Y+ L+ + C       A +   RMI+ G
Sbjct: 371 LINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDG 430

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
                  Y  L+N  C  G +  A+    EM++KG  P       L+ G      ++ A 
Sbjct: 431 IGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAF 490

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ NKMI  G   ++ TF +LI  +C + ++    E++  + +  +     TY +LI   
Sbjct: 491 KLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGY 550

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            + G ID+AF LL ++ + G  P    Y P+I G+   G+   A  F  ++  +    N 
Sbjct: 551 CRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNE 610

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             Y+ L+    + GR +EA +   EM + G+     C  ++ DG
Sbjct: 611 MCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDG 654



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 132/288 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   NL  +  T S++I+ F + G +D A+  F++       + V  YNSL+   C+   
Sbjct: 391 MSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGD 450

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A +L   M  KG  P   T+  L++ +C   ++++A +   +M D G  P V     
Sbjct: 451 LSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTA 510

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL +   +  A ++ ++++++       T+N LIE  C+ G+++   E+   + + G
Sbjct: 511 LISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKG 570

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D  TY+ LI  +   G + +A   + +L +   K     Y+ ++ G  + G+  +A 
Sbjct: 571 LVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEAL 630

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               EM  +G   +   + +LI    +        + L +M + GL P
Sbjct: 631 SASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRP 678



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 138/343 (40%), Gaps = 35/343 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I  M+     +S  T +++I    K   V  AVEV            V+ Y +L+   C 
Sbjct: 248 IRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCR 307

Query: 65  VKLFHG-----------------------------------AYALIRRMIRKGFVPDKRT 89
           ++ F                                     AY L+ ++ R GFVP+   
Sbjct: 308 LQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFV 367

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y  L+N+ C  G + +A+     MS     P      +L+     +G L+ A    ++MI
Sbjct: 368 YNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMI 427

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G    +  +NSLI   CK G++     ++  +   G+    +T+  LI    K   + 
Sbjct: 428 QDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQ 487

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +AF+L + ++++G  P    +  +I G+    +  +A   F E+  +   P    Y +LI
Sbjct: 488 KAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLI 547

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
               R G+  +A   L +M + GL P +  +  +  GL + G+
Sbjct: 548 EGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGR 590



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 4/320 (1%)

Query: 12  NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  V P   T + +I  + K   V  A +++NK         V  + +L+  LC      
Sbjct: 463 NKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMA 522

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  L   ++ +   P + TY +L+  +C  GK+ +A E L++M  KG  P       L+
Sbjct: 523 EASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLI 582

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL + G +  AK  ++ + KQ   L+   +++L+   C+ G +   +     + + G+ 
Sbjct: 583 SGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGIN 642

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+  + +LI    K       F LL ++ + G +P   +Y  +I    + G F  AF  
Sbjct: 643 MDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFEC 702

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           +  M  +   PN   YT L+    + G    A      M    + P S  +    D L  
Sbjct: 703 WDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTK 762

Query: 310 CGKHDLAEKIELLEVSLRSV 329
            G  ++ E I L    L+ +
Sbjct: 763 EG--NMKEAIGLHHAMLKGL 780



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 108/246 (43%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +++ M     +P+ RT + L+N      K     E   E  + G  P       +V+
Sbjct: 174 AVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVR 233

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            +        AK+ +  M   GF L + T+N LI  +CK   V   VE+  S+   GL A
Sbjct: 234 SMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAA 293

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV TY  L+    +    +   +L+  +VE G  P  +  + ++ G+ ++G+ DDA+   
Sbjct: 294 DVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELV 353

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            ++   G  PN  VY  LI    +GG   +A      M+ M L P    + ++ D     
Sbjct: 354 VKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRS 413

Query: 311 GKHDLA 316
           G+ D+A
Sbjct: 414 GRLDVA 419



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 131/300 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            +L+++ +     + +AV +     A N    V   ++LL  L +V+ F   + L    +
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESV 217

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  T + +V + C       A+E ++ M   GF+  +   ++L+ GL     + 
Sbjct: 218 NAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVS 277

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++   +  +G   D+ T+ +L+   C+  + E  +++   + +LG     +    L+
Sbjct: 278 EAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLV 337

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K G ID+A+ L+  +   G  P   +Y  +I  + + G  D A   +S M +    
Sbjct: 338 DGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLR 397

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           PN   Y++LI    R GR   A +Y   M + G+      ++ + +G    G    AE +
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESL 457



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 136/326 (41%), Gaps = 3/326 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E M    L     T   +I      G V  A +  +     N +   + Y++LL  
Sbjct: 560 FELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHG 619

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A +    MI++G   D   +A+L++        +   + L++M D+G  P 
Sbjct: 620 YCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPD 679

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++      G  + A +  + M+ +    ++ T+ +L+  +CK+GE++    ++ 
Sbjct: 680 NVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFK 739

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  +  TY   +  ++K G + EA  L H +++ G       +  II+G  + G
Sbjct: 740 RMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLG 798

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +F +A    SEM   G  P+   Y+ LI    R G    +      M   GL P    ++
Sbjct: 799 RFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYN 858

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLR 327
           L+  G   C   +L +  EL +  LR
Sbjct: 859 LLIYGC--CVNGELDKAFELRDDMLR 882



 Score = 63.9 bits (154), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 1/209 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           ++Y S++    +   F  A+     M+ +   P+  TY  L+N  C +G+M  A    + 
Sbjct: 681 VIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKR 740

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P        +  L   G ++ A  + + M+K G + +  T N +I   CK G 
Sbjct: 741 MQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGR 799

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
                ++   + + G+  D  TY  LI    ++G +  + +L   ++  G +P    Y  
Sbjct: 800 FHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNL 859

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +I G    G+ D AF    +M  +G  P+
Sbjct: 860 LIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G +D A  +F +  A N     + Y   L  L +      A  L   M
Sbjct: 717 TYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAM 776

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG + +  T+ I++  +C  G+  EA + L EM++ G  P       L+     +G +
Sbjct: 777 L-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNV 835

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            ++ ++ + M+ +G   DL  +N LI   C +GE++   E+   + + G+  D
Sbjct: 836 GASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 147/309 (47%), Gaps = 11/309 (3%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS +TL   I    K G    A+E+  +      +  V++YN+++  +C+ KL + A+  
Sbjct: 175 VSYRTL---INGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDF 231

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M+ K   P   TY  L+   C  G++++A   L +M  +  NP V    +LV     
Sbjct: 232 YSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCK 291

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G ++ AK +   M+K+    ++ T+NSL+   C   EV     ++ ++ ++G+  DV +
Sbjct: 292 EGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHS 351

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGH--KPFPSL--YAPIIKGMFRRGQFDDAFCFF 250
           Y I+I    K  M+DEA +L     E+ H  + FP +  Y  +I G+ + G+   A    
Sbjct: 352 YSIMISGFCKIKMVDEAMKLF----EEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLI 407

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM  +G PPN   Y  L+    +     +A   L ++ +  + P    ++++ +GL   
Sbjct: 408 GEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKS 467

Query: 311 GKHDLAEKI 319
           G+   A+K+
Sbjct: 468 GRLKDAQKV 476



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 121/230 (52%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N++ +  T S++++ F K G V  A  VF      + +  ++ YNSL+   C V   + A
Sbjct: 274 NINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKA 333

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            ++   M + G  PD  +Y+I+++ +C    + EA +  +EM  K   P V   + L+ G
Sbjct: 334 ESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDG 393

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G +  A +++ +M  +G   ++ T+NSL++ +CK+  V+  +E+   +    +   
Sbjct: 394 LCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPS 453

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           V TY ILI  + K+G + +A ++  +++ +G+      Y  +IKG  ++G
Sbjct: 454 VCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 36/289 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K  LV++A + +++  A      V+ YN+L+  LC +     A  L+ +MI + 
Sbjct: 215 IIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN 274

Query: 83  FVPDKRTYAILVNAWCSSGKMREA-----------------------------------Q 107
             P   T++ILV+A+C  GK++EA                                   +
Sbjct: 275 INPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAE 334

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
                M+  G  P V    +++ G      ++ A ++  +M  +    D+ T+NSLI+ +
Sbjct: 335 SIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGL 394

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CKSG + + +++   +   G   ++ TY  L+ A+ K   +D+A  LL  L +   +P  
Sbjct: 395 CKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSV 454

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRG 275
             Y  +I G+ + G+  DA   F ++ + G+  +   Y TM+   C +G
Sbjct: 455 CTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG 503



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 97/176 (55%), Gaps = 11/176 (6%)

Query: 13  LSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKL 67
           + V+P   + S++I  F K  +VD A+++F +    +C+Q    V+ YNSL+  LC+   
Sbjct: 343 IGVAPDVHSYSIMISGFCKIKMVDEAMKLFEE---MHCKQIFPDVVTYNSLIDGLCKSGR 399

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  LI  M  +G  P+  TY  L++A C +  + +A E L ++ D    P V   ++
Sbjct: 400 ISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNI 459

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
           L+ GL  +G L+ A+++   ++  G+ +D+ T+N++I+  CK G   F +  +++V
Sbjct: 460 LINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKG---FVIPQFWTV 512



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 113/255 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +  +L +L +   +    +L R+M   G   +  T +IL+N +   G    +     
Sbjct: 69  IIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLSFSVFS 128

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +  KG+ P       L++GL   G +  A    +K++  GF L+  ++ +LI  +CK G
Sbjct: 129 NILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVG 188

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + +  +EM   +    +  DV  Y  +I  V K  ++++AF     +V     P    Y 
Sbjct: 189 QTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYN 248

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+   GQ  DA     +M ++   P    +++L+    + G+  EA N  V M + 
Sbjct: 249 TLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKK 308

Query: 292 GLTPISRCFDLVTDG 306
            + P    ++ + +G
Sbjct: 309 DVKPNIVTYNSLMNG 323



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 83/180 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V+ A  +FN          V  Y+ ++   C++K+   A  L   M  K   PD  TY  
Sbjct: 330 VNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++  A + + EM D+G  P +   + L+  L    +++ A +++ K+    
Sbjct: 390 LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHN 449

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
               + T+N LI  +CKSG ++   +++  V   G   DV TY  +I    K G +   F
Sbjct: 450 IQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIPQF 509


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 140/280 (50%), Gaps = 2/280 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +         ++ Y+S++ ALC+ +    A A
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ KG +PD  TY  L+  + S+G+ +EA    +EM  +   P V   + L+  L 
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++  ++      G +    +++  +   G+  D+ 
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 397

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G  P++  Y  LI      G  ++A   + E+   G+
Sbjct: 458 IDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 129/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++++  +   G + +  ++F+          +  +N L+ A     +   A  +   M
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY  ++ A C  GKM +A E   +M D+G  P       L+QG    G L
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+++++++  G  LD+  F S+I  +CK G V     ++     +GL  D   Y +L
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G +++A R+   +V  G +P    Y  ++ G  + G+ D+    F EM  KG 
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+  +Y ++I      GR V A     EMTE G+      + +V  GL
Sbjct: 603 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 137/293 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    +LM    ++    T +++I+ +   G++D A+ +FN+      +  V+ Y +++ 
Sbjct: 380 MTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIA 439

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC +     A     +MI +G VPDK  Y  L+  +C+ G + +A+E + E+ + G   
Sbjct: 440 ALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRL 499

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     ++  L   G +  A+ + +  +  G   D   +N L++  C  G++E  + ++
Sbjct: 500 DIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVF 559

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++   G+  +V  Y  L+    K G IDE   L   +++ G KP   LY  II G+F  
Sbjct: 560 DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEA 619

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           G+   A   F EM   G   N+  Y++++    +   F EA     E+  M +
Sbjct: 620 GRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 672



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +     C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 198 GKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 256

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ +V+A C +  M +A+ FL++M +KG  P     + L+ G  + G  + A ++  +
Sbjct: 257 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +Q  + D+   N+L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 377 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 436

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    +  +  G   C    L +  EL+ 
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF--CTHGSLLKAKELIS 490



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +   ++ + LL   CE K   
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTD 165

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y IL+ + C+ GK  +A + L+ M++ G   +P V   +
Sbjct: 166 EALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYN 225

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   DL T++S++  +CK+  ++        +   
Sbjct: 226 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNK 285

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  D  TY  LI   S  G   EA R+   +      P       ++  + + G+  +A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   YT+++      G  V+  +    M   G+ P    F+++   
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 406 YANCGMLDKA 415



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 117/268 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G V +A  +F+           ++YN L+   C V     A  +   M+  G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+   Y  LVN +C  G++ E     +EM  KG  P     ++++ GL  AG    AK
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
              ++M + G  ++  T++ ++  + K+   +  + ++  +  + +  D+ T   +I  +
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   ++EA  L  ++   G  P    Y+ +I  + + G  ++A   FS M+  G  P+ 
Sbjct: 687 FQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDS 746

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    +    V A  YL ++ E
Sbjct: 747 RLLNHVVRELLKKNEIVRAGAYLSKIDE 774



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F  HG +  A E+ ++      +  ++ + S++  LC++     A  +    +  G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD   Y +L++ +C  GKM +A      M   G  P V G   LV G    G ++   
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M+++G       +N +I+ + ++G        ++ + + G+  +  TY I++  +
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   L     K        +I GMF+  + ++A   F+ +   G  P  
Sbjct: 652 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCA 711

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             Y+++IT   + G   EA +    M   G  P SR  + V
Sbjct: 712 VTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHV 752



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 130/329 (39%), Gaps = 35/329 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G    AV VF +    +    V+  N+L+ +LC+      A  +   M
Sbjct: 293 TYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTM 352

Query: 79  IRKGFVPDKRTYAILVN-----------------------------------AWCSSGKM 103
             KG  PD  +Y I++N                                   A+ + G +
Sbjct: 353 AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGML 412

Query: 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
            +A     EM D G  P V     ++  L   G ++ A +  N+MI QG V D   ++ L
Sbjct: 413 DKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCL 472

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I+  C  G +    E+   +   G+  D+  +  +I  + K G + +A  +    V  G 
Sbjct: 473 IQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGL 532

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   +Y  ++ G    G+ + A   F  M   G  PN   Y  L+    + GR  E  +
Sbjct: 533 HPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLS 592

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              EM + G+ P +  ++++ DGL   G+
Sbjct: 593 LFREMLQKGIKPSTILYNIIIDGLFEAGR 621



 Score = 54.7 bits (130), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++++  T S+++    K+   D A+ +F +  A N +  ++  N+++  + + + 
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   + R G VP   TY+I++      G + EA++    M + G  P  R  + 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +V+ LL    +  A   ++K+ ++ F L+  T   L++     G
Sbjct: 752 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 135/290 (46%), Gaps = 2/290 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A E+ N+     C   ++ YN  +  LC+ K    A  + R +  KG   D  TY  L
Sbjct: 242 NKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTL 301

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           V   C   +     E + EM + G+ P       L++GL+  G +E A +++NK+ K G 
Sbjct: 302 VLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGV 361

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           V +L  +NS+I ++CK+G++E    ++  + + GL  +  TY ILI    +   +D AF 
Sbjct: 362 VPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFY 421

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
             + ++E G       Y  +I    + G+   A   F EM  KG  P    YT LI+   
Sbjct: 422 YFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYC 481

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           + G   +A     EMT  G+ P +  F  +  GL  C  + +AE  +L +
Sbjct: 482 KDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGL--CQINKMAEASKLFD 529



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 135/303 (44%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
            + LM+ Y L    +TLS ++    +       +E+F+       +    +Y  ++  LC
Sbjct: 177 VVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLC 236

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           E+K F+ A  +I +    G      TY + +N  C S ++ EA E  + + +KG    + 
Sbjct: 237 ELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLV 296

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               LV GL      E   +M+++MI+ G+V      + LIE + K G +E   E+   V
Sbjct: 297 TYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKV 356

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            KLG+  ++  Y  +I ++ K G ++EA  L   + E G  P    Y  +I G  RR + 
Sbjct: 357 GKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKL 416

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D AF +F++M   G       Y  +I    + G+   A     EM + GL P    +  +
Sbjct: 417 DVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSL 476

Query: 304 TDG 306
             G
Sbjct: 477 ISG 479



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 138/339 (40%), Gaps = 34/339 (10%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +M    L+ +  T +++I+ FG+   +D A   FNK         V  YNS++   C+  
Sbjct: 390 VMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFG 449

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L + M+ KG  P   TY  L++ +C  G + +A +   EM+ KG  P      
Sbjct: 450 KMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFT 509

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            L+ GL     +  A ++ ++M++   + +  T+N LIE  C+ G      E+   + K 
Sbjct: 510 ALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKK 569

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  D  TY+ LI  +   G + EA   +++L     +     Y  +++G  + G+  +A
Sbjct: 570 GLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEA 629

Query: 247 ----------------------------------FCFFSEMKIKGHPPNRPVYTMLITMC 272
                                             F    EM  KG  P+  +YT+LI   
Sbjct: 630 LVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGF 689

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            + G   +A  +   M   G  P S  +  + +GL   G
Sbjct: 690 IKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAG 728



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 35/334 (10%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S+S  T ++ I    K   V  AVEV         +  ++ Y +L+  LC ++ F     
Sbjct: 257 SLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGME 316

Query: 74  LIRRMIRKGFVPDKRT-----------------------------------YAILVNAWC 98
           ++  MI  G+VP +                                     Y  ++N+ C
Sbjct: 317 MMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLC 376

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            +GK+ EA+     M+++G NP      +L+ G      L+ A    NKMI+ G    + 
Sbjct: 377 KTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVY 436

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           ++NS+I   CK G+++    ++  +   GL   V+TY  LI    K G++ +AF+L H +
Sbjct: 437 SYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEM 496

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              G  P    +  +I G+ +  +  +A   F EM      PN   Y +LI    R G  
Sbjct: 497 TGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNT 556

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             A   L EM + GL+P +  +  +  GL + G+
Sbjct: 557 TRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGR 590



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 131/313 (41%), Gaps = 35/313 (11%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S   +S +IE   K G ++ A E+ NK         + +YNS++ +LC+      A  L 
Sbjct: 329 SEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLF 388

Query: 76  RRMIRKGFVPDKRTYAIL-----------------------------------VNAWCSS 100
             M  +G  P+  TY IL                                   +N  C  
Sbjct: 389 SVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKF 448

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           GKM+ A+   +EM DKG  P V     L+ G    G +  A ++ ++M  +G   +  TF
Sbjct: 449 GKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTF 508

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            +LI  +C+  ++    +++  + +L +  +  TY +LI    + G    AF LL  +++
Sbjct: 509 TALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIK 568

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y P+I G+   G+  +A  F +++  K    +   YT L+    + GR  E
Sbjct: 569 KGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKE 628

Query: 281 AANYLVEMTEMGL 293
           A     EM   GL
Sbjct: 629 ALVARQEMVGRGL 641



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K Y  S S     ++I+ + ++  V + V V N    +     V   ++LL AL  +
Sbjct: 145 ESYKKYKFS-SSSGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARI 203

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           + F     L   ++  G  PD   Y ++V   C      +A+E + +    G +  +   
Sbjct: 204 RKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTY 263

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ + GL  +  +  A ++   + ++G   DL T+ +L+  +C+  E E  +EM   + +
Sbjct: 264 NVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIE 323

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LG     +    LI  + K G I+ AF LL+ + + G  P   +Y  +I  + + G+ ++
Sbjct: 324 LGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEE 383

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   FS M  +G  PN   YT+LI   GR  +   A  Y  +M E G++     ++ + +
Sbjct: 384 AELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMIN 443

Query: 306 GLKNCGKHDLAE 317
                GK  +AE
Sbjct: 444 CQCKFGKMKMAE 455



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 1/229 (0%)

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L+R M  KG  PD   Y IL++ +  SG +++A EF   M  +G+ P       LV G
Sbjct: 664 FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNG 723

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  AGY+  AK +  +M+    + +  T+   ++ + K G +E  ++++ ++ + G  A+
Sbjct: 724 LFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFAN 782

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY ILI    + G   EA +LL  ++  G  P    Y+  I    +RG  D A   + 
Sbjct: 783 TVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWE 842

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            M  +G  P+R V+  LI  C   G    A     +M   GL P    +
Sbjct: 843 CMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTY 891



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 36/225 (16%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++    K G V+ A  +F +          + Y   L  L +      A  L   M
Sbjct: 716 TYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAM 775

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++  F  +  TY IL+  +C  GK +EA + L                            
Sbjct: 776 LQGSF-ANTVTYNILIRGYCQIGKFQEAAKLL---------------------------- 806

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                  + MI  G V D  T+++ I   CK G V+  ++M+  + + GL  D   +  L
Sbjct: 807 -------DVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFL 859

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           I A    G +D A +L ++++  G KP  S Y  ++  + +R + 
Sbjct: 860 IHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARL 904


>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 822

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 153/309 (49%), Gaps = 12/309 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALC 63
           +E MK  N   + + L+ +I  + ++G VD AV++F   C  +NC  CV+  NSLL  L 
Sbjct: 116 LEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKMFYMVCELYNCFPCVVANNSLLNCLV 175

Query: 64  EVKLFHGAYALIRRMIRKG------FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +      A  L  +M+ +G       V D  +  I+V   C  GK+ E ++ + +    G
Sbjct: 176 KNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNG 235

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   ++++ G    G L+ A ++  ++  +GF+  LET+ +LI+  CK+G+ +   
Sbjct: 236 CVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVD 295

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           ++   +  +GL  +V  +  +I A  K G++D+A  ++  + E G +P  + Y  +I   
Sbjct: 296 QLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFS 355

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G+  +A  F    K +   PN+  YT L+    + G +V A++ L ++ E G  P  
Sbjct: 356 CSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKP-- 413

Query: 298 RCFDLVTDG 306
              DLV+ G
Sbjct: 414 ---DLVSYG 419



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 2/315 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +L V   ++ ++++     G V+   ++ +      C   V+ YN ++   C+      A
Sbjct: 200 DLVVDNYSIVIVVKGLCDVGKVEEGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRA 259

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   +  KGF+P   TY  L++ +C +GK +   + L EM+  G N  V+  + ++  
Sbjct: 260 TRVFEELKLKGFLPTLETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDA 319

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A +M+  M + G   D+ T+N LI   C  G ++   E      +  L  +
Sbjct: 320 KYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPN 379

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             +Y  L+ A  K G    A  +L  + E G KP    Y   I G    G+ D A     
Sbjct: 380 KFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVRE 439

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +M  KG  P+  +Y +L++   + GRF  A   L EM ++ L P +  +  + DG     
Sbjct: 440 KMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGF--IR 497

Query: 312 KHDLAEKIELLEVSL 326
            ++L +  EL EV +
Sbjct: 498 NNELDKATELFEVVM 512



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 135/312 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+V+ +  + II+   K+GLVD A E+    T   C+  +  YN L+   C    
Sbjct: 301 MNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSCSGGR 360

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   + R   +  +P+K +Y  L++A+C  G    A + L ++++ G  P +     
Sbjct: 361 IKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGDKPDLVSYGA 420

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + G +  G ++ A  +  KM+++G   D + +N L+  +CK G       +   +  L 
Sbjct: 421 FIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLN 480

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D   Y  L+    +   +D+A  L   ++  G  P    Y  +IKG+ + G+  DA 
Sbjct: 481 LQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAV 540

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            + ++MKI  H P+   ++ +I    +      A     +M +    P    +  + +G 
Sbjct: 541 SYVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGF 600

Query: 308 KNCGKHDLAEKI 319
                   AEK+
Sbjct: 601 CKIADMSRAEKV 612



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 2/305 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T   +I+ F K G      ++ N+         V ++NS++ A  +  L   A  ++R 
Sbjct: 276 ETYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEMMRM 335

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD  TY IL+N  CS G+++EA+EFL+   ++   P       L+      G 
Sbjct: 336 MTEMGCEPDITTYNILINFSCSGGRIKEAEEFLERAKERTLLPNKFSYTPLMHAYCKQGD 395

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A  M+ K+ + G   DL ++ + I      GE++  + +   + + G+  D   Y +
Sbjct: 396 YVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNV 455

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + K G    A  LL  +++   +P   +YA ++ G  R  + D A   F  +  KG
Sbjct: 456 LMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKG 515

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P    Y ++I    + G+  +A +Y+ +M      P       V DG     +HDL  
Sbjct: 516 IDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGY--VKQHDLDS 573

Query: 318 KIELL 322
            +++ 
Sbjct: 574 ALKMF 578



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 99/234 (42%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +M+ KG  PD + Y +L++  C  G+   A+  L EM D    P       LV G +  
Sbjct: 439 EKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRN 498

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L+ A ++   ++ +G    +  +N +I+ +CK G++   V     +       D  T+
Sbjct: 499 NELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTH 558

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I    K   +D A ++   +++  +KP    Y  +I G  +      A   F  M+ 
Sbjct: 559 STVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQS 618

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
               PN   YT+LI    + G+  +AA++   M      P    F  + +GL N
Sbjct: 619 FNLEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTN 672



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+  LC+   F  A  L+  M+     PD   YA LV+ +  + ++ +A E  + +
Sbjct: 452 IYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVV 511

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             KG +P V G +++++GL   G +  A   VNKM       D  T +++I+   K  ++
Sbjct: 512 MSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTHSTVIDGYVKQHDL 571

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  ++M+  + K     +V  Y  LI    K   +  A ++   +     +P    Y  +
Sbjct: 572 DSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTIL 631

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           I G  + G+ + A  FF  M +    PN   +  LI 
Sbjct: 632 IGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLIN 668



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 23/230 (10%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN--- 161
           E +  L++M ++ F P +   + ++      G+++ A +M        F +  E +N   
Sbjct: 111 EIEIVLEDMKNRNFKPTLEALNSVICVYAEYGFVDKAVKM--------FYMVCELYNCFP 162

Query: 162 ------SLIETICKSGEVEFCVEMYYSVCKLG------LCADVSTYKILIPAVSKAGMID 209
                 SL+  + K+G+V+   E+Y  + + G      L  D  +  I++  +   G ++
Sbjct: 163 CVVANNSLLNCLVKNGKVDVACELYDKMLERGGDHGLDLVVDNYSIVIVVKGLCDVGKVE 222

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           E  +L+ +   +G  P    Y  II G  ++G    A   F E+K+KG  P    Y  LI
Sbjct: 223 EGRKLIDDRWGNGCVPNVVFYNVIIDGYCKKGDLKRATRVFEELKLKGFLPTLETYGALI 282

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               + G+F      L EM  MGL    + F+ + D     G  D A ++
Sbjct: 283 DGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKYKYGLVDKAAEM 332



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 128/319 (40%), Gaps = 51/319 (15%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M   NL       + +++ F ++  +D A E+F    +      V+ YN ++  LC+   
Sbjct: 476 MLDLNLQPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGK 535

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A + + +M      PD+ T++ +++ +                        V+  DL
Sbjct: 536 MTDAVSYVNKMKIANHAPDEYTHSTVIDGY------------------------VKQHDL 571

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
                      +SA +M  +M+KQ +  ++  + SLI   CK  ++    +++ ++    
Sbjct: 572 -----------DSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFN 620

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG---------MF 238
           L  +V TY ILI   SK G  ++A      ++ +   P  + +  +I G         + 
Sbjct: 621 LEPNVVTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGLTNITNTTLLI 680

Query: 239 RRGQFDD---AFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYL-VEMTEMGL 293
            + + +D      FF+ M  +G       Y ++++ +C  G   V+ A  L  +M   G 
Sbjct: 681 EKNEENDRSLILDFFATMISEGWSQVIATYNSIIVCLCKHG--MVDTAQLLQTKMLRKGF 738

Query: 294 TPISRCFDLVTDGLKNCGK 312
              S CF  +  GL   GK
Sbjct: 739 LMDSVCFSALLHGLCQTGK 757


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G    A ++++     +    +  YNSL+   C       A  +   M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C S ++ +  E  +EMS +G          L+QGL + G  
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+++  +M+  G   D+ T++ L++ +C +G++E  +E++  + K  +  D+  Y  +
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +D+ + L  +L   G KP    Y  +I G+  +    +A+    +MK  G 
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 571

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            PN   Y  LI    R G    +A  + EM
Sbjct: 572 LPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G  D A+ + NK  A   +  V+++N+++ +LC+ +    A  L + M
Sbjct: 227 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 286

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L++  CS G+  +A + L +M +K  NP +   + L+   +  G  
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 346

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + MIK+    D+ T+NSL+   C    ++   +M+  +       DV TY  L
Sbjct: 347 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +++   L   +   G       Y  +I+G+F  G  D+A   F +M   G 
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           PP+   Y++L+      G+  +A      M +  +      +  + +G+   GK D
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 2/243 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T + ++  F  H  +D A ++F    + +C   V+ YN+L+   C+ K     
Sbjct: 360 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDG 419

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M  +G V D  TY  L+      G    AQ+  ++M   G  P +    +L+ G
Sbjct: 420 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G LE A ++ + M K    LD+  + ++IE +CK+G+V+   +++ S+   G+  +
Sbjct: 480 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 539

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  +I  +    ++ EA+ LL  + EDG  P    Y  +I+   R G    +     
Sbjct: 540 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 599

Query: 252 EMK 254
           EM+
Sbjct: 600 EMR 602



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 140/303 (46%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I     +G   +A ++ +          ++ +N+L+ A  +   F  A  L   M
Sbjct: 297 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 356

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++   PD  TY  LVN +C   ++ +A++  + M  K   P V   + L++G   +  +
Sbjct: 357 IKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRV 416

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M  +G V D  T+ +LI+ +   G+ +   +++  +   G+  D+ TY IL
Sbjct: 417 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 476

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +++A  +   + +   K    +Y  +I+GM + G+ DD +  F  + +KG 
Sbjct: 477 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 536

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAE 317
            PN   Y  +I+         EA   L +M E G  P S  ++ L+   L++  K   AE
Sbjct: 537 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 596

Query: 318 KIE 320
            I 
Sbjct: 597 LIR 599



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 118/252 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A AL+ +M++ G+ P   T + L+N +C   ++ +A   + +M 
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P       L+ GL        A  +V++M+++G   +L T+  ++  +CK G+ +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   +    + ADV  +  +I ++ K   +D+A  L   +   G +P    Y+ +I
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  K   PN   +  LI    + G+FVEA     +M +  + 
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362

Query: 295 PISRCFDLVTDG 306
           P    ++ + +G
Sbjct: 363 PDIFTYNSLVNG 374



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y  ++  LC+      A  L+ +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   +  ++++ C    + +A    +EM  KG  P V     L+  L + G  
Sbjct: 252 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 311

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+++ MI++    +L TFN+LI+   K G+     ++Y  + K  +  D+ TY  L
Sbjct: 312 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 371

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +D+A ++   +V     P    Y  +IKG  +  + +D    F EM  +G 
Sbjct: 372 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 431

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI      G    A     +M   G+ P    + ++ DGL N GK  L + 
Sbjct: 432 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK--LEKA 489

Query: 319 IELLEVSLRS 328
           +E+ +   +S
Sbjct: 490 LEVFDYMQKS 499



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 115/252 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  F +   +  A+ +  K      +  ++  +SLL   C  K    A AL+ +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G+ PD  T+  L++      K  EA   +  M  +G  P +    ++V GL   G  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++NKM       D+  FN++I+++CK   V+  + ++  +   G+  +V TY  L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G   +A +LL +++E    P    +  +I    + G+F +A   + +M  +  
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361

Query: 259 PPNRPVYTMLIT 270
            P+   Y  L+ 
Sbjct: 362 DPDIFTYNSLVN 373



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G  DNA +VF +  +      ++ Y+ LL  LC       A  +   M
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  ++   C +GK+ +  +    +S KG  P V   + ++ GL +   L
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ KM + G + +  T+N+LI    + G+     E+   +       D ST   L
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-L 615

Query: 199 IPAVSKAGMIDEAF 212
           +  +   G +D++F
Sbjct: 616 VANMLHDGRLDKSF 629



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 2/162 (1%)

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           KM +   V  L T+N LI   C+  ++   + +   + KLG    + T   L+       
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 169

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            I +A  L+  +VE G++P    +  +I G+F   +  +A      M  +G  PN   Y 
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229

Query: 267 MLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +++  +C RG   + A N L +M    +      F+ + D L
Sbjct: 230 VVVNGLCKRGDTDL-ALNLLNKMEAAKIEADVVIFNTIIDSL 270



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + M+   + +     + +IE   K G VD+  ++F   +    +  V+ YN+++  LC  
Sbjct: 494 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +L   AYAL+++M   G +P+  TY  L+ A    G    + E ++EM
Sbjct: 554 RLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 1/192 (0%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R++L  GL +   L+ A  +   M+K   +  +  FN L+  I K  + +  + +   + 
Sbjct: 54  REILRNGLHDMK-LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 112

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +L +   + TY ILI    +   I  A  LL  +++ G++P     + ++ G     +  
Sbjct: 113 RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 172

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     +M   G+ P+   +T LI       +  EA   +  M + G  P    + +V 
Sbjct: 173 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 232

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 233 NGLCKRGDTDLA 244


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 132/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A+ VF+  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 143 FNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMH 202

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM DKG  P       L+ G    G ++
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  +Y  LI
Sbjct: 263 LAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLI 322

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 323 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLR 382

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G     +  L EM   G  P    ++++ +G
Sbjct: 383 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 142 FFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 201

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 202 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 261

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 262 DLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTL 321

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +   YT LI+   + GR ++A   L EM  +GL
Sbjct: 322 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGL 381

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+    +LL+
Sbjct: 382 RPDTGTYTMIINEF--CKKGDVWTGSKLLK 409



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 122/264 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 164 DAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 223

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 224 SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITY 283

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  ++ +LI+  CK G++E   E    + +
Sbjct: 284 NTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQ 343

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G +P    Y  II    ++G    
Sbjct: 344 ENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWT 403

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 404 GSKLLKEMQRDGHVPSVVTYNVLM 427



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +   + ++
Sbjct: 73  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEIL 132

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R A      ++  G  P V   + L+ G +  G L+
Sbjct: 133 ECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 192

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 193 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 252

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM++KG  
Sbjct: 253 DGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLK 312

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 313 PDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKM 372

Query: 320 --ELLEVSLR 327
             E+L V LR
Sbjct: 373 LREMLSVGLR 382



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 212 TYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM 271

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++AQ+ + EM  KG  P       L+ G    G L
Sbjct: 272 LSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDL 331

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 332 ETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMI 391

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G +    +LL  +  DGH P    Y  ++ G
Sbjct: 392 INEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 2/238 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 69  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFY 128

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++   + ++ ++ K GL   V ++  L+    + 
Sbjct: 129 KEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRL 188

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    Y+ +I G+ +  + DDA   F EM  KG  PN   +
Sbjct: 189 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 248

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L++
Sbjct: 249 TTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLID 304



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 59/127 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M+   L     + + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 303 IDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQ 362

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  PD  TY +++N +C  G +    + L+EM   G  P V  
Sbjct: 363 EGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 422

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 423 YNVLMNG 429


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 126/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +   +  + L   M 
Sbjct: 139 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E  +EM  KG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G +    ++   +   GL  D  TY  LI
Sbjct: 259 LAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G   + +  L EM   G  P
Sbjct: 379 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAP 414



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +AVE +                 +L  L ++K F+  +A    ++
Sbjct: 69  FSGLITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L 
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G  + A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L   L+
Sbjct: 369 MREMLSFGLK 378



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 116/256 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G ++   ++ +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 220 SKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L  A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 280 NTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A +++  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCKKGDVWK 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  GH P+
Sbjct: 400 GSKLLKEMQRDGHAPS 415



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 128/289 (44%), Gaps = 22/289 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FVP----------DKRTYAILVNA 96
           Y +++  LC  ++F  A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 16  YCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASAVFAAIIETKGNQRSDIYVFSGLITA 75

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +  F  P      +++ L+   Y         ++++ G+   
Sbjct: 76  YLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILECGYPAS 135

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G ++E F+L  
Sbjct: 136 LYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFKLKS 195

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T LI    + G
Sbjct: 196 AMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNG 255

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG----KHDLAEKIEL 321
           R   A     +M    L P    ++ +  GL   G     HDL +++ +
Sbjct: 256 RVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSM 304



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 50/104 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G +D A E   +    N +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  PD  TY +++N +C  G + +  + L+EM   G  P V
Sbjct: 373 LSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSV 416


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 144/298 (48%), Gaps = 3/298 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    +    T + +I+  GK GL+D  + +F +    +C   V+ YN+L+   C+ + 
Sbjct: 82  MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFER 141

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+  +  M   G  P+  TY+  ++A+C  G ++EA +F  +M      P       
Sbjct: 142 MPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTS 201

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+     AG L  A ++V ++++ G  L++ T+ +L++ +C+ G ++   E++ ++   G
Sbjct: 202 LIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAG 261

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +  TY  L+    KA  ++ A  +L  + E   KP   LY  I+ G+    + ++A 
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAK 321

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM--GLTPISRCFDLV 303
               E+K  G   N  +YT L+    + G+  EA   L EM ++  GL   + CF++ 
Sbjct: 322 LLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCK-NNCFEVA 378



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 135/302 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + +   P++ + ++    K G  D + + F    A   ++ V  YN ++  LC+   
Sbjct: 12  MRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGD 71

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A +L  +M   GF PD  TY  L++     G + E     ++M D   +P V   + 
Sbjct: 72  LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNA 131

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        +  A + +++M   G   ++ T+++ I+  CK G ++  ++ +  + ++ 
Sbjct: 132 LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVA 191

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  KAG + EA +L+  +++ G K     Y  ++ G+   G+  +A 
Sbjct: 192 LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAE 251

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN+  YT L+    +      A + L EM E  + P    +  +  GL
Sbjct: 252 EVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGL 311

Query: 308 KN 309
            N
Sbjct: 312 CN 313



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 140/330 (42%), Gaps = 23/330 (6%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK  +      T + +I  F K   +  A E  ++  A   +  V+ Y++ + A C+ 
Sbjct: 115 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKE 174

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A      M R    P++ TY  L++A C +G + EA + ++E+   G    V   
Sbjct: 175 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 234

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL   G ++ A+++   M+  G   + ET+ +L+    K+ E+E+  ++   + +
Sbjct: 235 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 294

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D+  Y  ++  +     ++EA  L+  + E G      +Y  ++   F+ GQ  +
Sbjct: 295 KCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATE 354

Query: 246 AF-----------------CF------FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
           A                  CF      F EM  KG  P++  YT LI    + G   EA 
Sbjct: 355 ALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEAL 414

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           N    M E+G+      +  +  GL + G+
Sbjct: 415 NLRDRMIEIGMELDLHAYTALIWGLSHSGQ 444



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 135/312 (43%), Gaps = 4/312 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G ++ A  +F +         ++ YNSL+    ++ L      +  +M
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 117

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD  TY  L+N +C   +M +A EFL EM   G  P V      +      G L
Sbjct: 118 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 177

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +    M +     +  T+ SLI+  CK+G +   +++   + + G+  +V TY  L
Sbjct: 178 QEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTAL 237

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + + G + EA  +   ++  G  P    Y  ++ G  +  + + A     EMK K  
Sbjct: 238 LDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCI 297

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P+  +Y T+L  +C    R  EA   + E+ E G+   +  +  + D     G+    E
Sbjct: 298 KPDLLLYGTILWGLCNE-SRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA--TE 354

Query: 318 KIELLEVSLRSV 329
            + LLE  L  V
Sbjct: 355 ALTLLEEMLDLV 366



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 108/235 (45%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P  R+   L++     G+   +++F ++M   G    V   ++++  L   G LE A+ +
Sbjct: 19  PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSL 78

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M + GF  D+ T+NSLI+   K G ++ C+ ++  +       DV TY  LI    K
Sbjct: 79  FTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK 138

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              + +AF  LH +  +G KP    Y+  I    + G   +A  FF +M+     PN   
Sbjct: 139 FERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFT 198

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           YT LI    + G   EA   + E+ + G+      +  + DGL   G+   AE++
Sbjct: 199 YTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEV 253



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 117/248 (47%), Gaps = 14/248 (5%)

Query: 12  NLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           N  V+P  +T + ++  F K   ++ A ++  +      +  +LLY ++L+ LC      
Sbjct: 259 NAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 318

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  LI  +   G   +   Y  L++A+  SG+  EA   L+EM D            LV
Sbjct: 319 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD------------LV 366

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
            GL      E AK++ ++M+ +G + D   + +LI+   K G ++  + +   + ++G+ 
Sbjct: 367 DGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGME 426

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+  Y  LI  +S +G + +A  LL  ++  G  P   +Y  +IK  +  G+ D+A   
Sbjct: 427 LDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALEL 486

Query: 250 FSEMKIKG 257
            +EM  +G
Sbjct: 487 QNEMAKRG 494



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 2/226 (0%)

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
           + EA E   +M      P  R  + L+  L   G  + +++    M   G    + T+N 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I+ +CK G++E    ++  + + G   D+ TY  LI    K G++DE   +   + +  
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
             P    Y  +I    +  +   AF F  EMK  G  PN   Y+  I    + G   EA 
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            + V+M  + LTP    +  + D   NC   +LAE ++L+E  L++
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDA--NCKAGNLAEALKLVEEILQA 225



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 2/147 (1%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            L+  LC+   F  A  L   M+ KG +PDK  Y  L++     G ++EA      M + 
Sbjct: 364 DLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEI 423

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G    +     L+ GL ++G ++ A+ ++++MI +G + D   +  LI+     G+V+  
Sbjct: 424 GMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEA 483

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVS 203
           +E+   + K G+   +S +   +P+V 
Sbjct: 484 LELQNEMAKRGMITGLSDHA--VPSVQ 508


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 148/324 (45%), Gaps = 4/324 (1%)

Query: 2   WK--TIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK  T  L +  N  + P  +  S +++   K G++  A +V +       +  V+ Y +
Sbjct: 341 WKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTA 400

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+ KG VP+ R+Y IL+N +C   +M +A   L++MS +G
Sbjct: 401 LMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQG 460

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
                   + L+ GL + G L+ A  + ++M+  G + DL T+  L++ +CK+  +   +
Sbjct: 461 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAM 520

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    L AD+  Y I I  + +AG ++ A  L  NL   G +P    Y  +I G+
Sbjct: 521 VLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGL 580

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            +RG  D+A   F +M   G   +  +Y  +I    R      A   L EM   G +   
Sbjct: 581 CKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADV 640

Query: 298 RCFDLVTDGLKNCGKHDLAEKIEL 321
               L+ + L + G     E++ L
Sbjct: 641 STTTLIVEMLSDDGLDQSFERLRL 664



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 140/319 (43%), Gaps = 4/319 (1%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P   T + +I      G +  A+ +F+K      Q  V+ Y +L+  LC+
Sbjct: 208 LAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCK 267

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A  L+R M++K   P+   Y  ++++ C   ++ EA     EM  KG +P +  
Sbjct: 268 VGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFT 327

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+  L N    +    ++N+M+    + ++  F+++++ +CK G +    ++   + 
Sbjct: 328 YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMI 387

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G+  DV TY  L+        +DEA ++   +V  G  P    Y  +I G  +  + D
Sbjct: 388 KRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMD 447

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A     +M ++G   +   Y  LI      GR   A     EM   G  P    + ++ 
Sbjct: 448 KAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILL 507

Query: 305 DGLKNCGKHDLAEKIELLE 323
           D L  C  H LAE + LL+
Sbjct: 508 DYL--CKNHHLAEAMVLLK 524



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 129/291 (44%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A+ +       NC+  V+ YN+++ +LC+ +    A+ L   MI KG  PD  
Sbjct: 267 KVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIF 326

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L++A C+  + +     L EM +    P V     +V  L   G +  A  +V+ M
Sbjct: 327 TYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMM 386

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           IK+G   D+ T+ +L++  C   E++  V+++ ++   G   +V +Y ILI    +   +
Sbjct: 387 IKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRM 446

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+A  LL  +   G       Y  +I G+   G+   A   F EM   G  P+   Y +L
Sbjct: 447 DKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRIL 506

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +    +     EA   L  +    L      +++  DG+   G+ + A  +
Sbjct: 507 LDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDL 557



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 13/325 (4%)

Query: 1   MWKTIELMKPYN--LSVSPQ-----------TLSLIIEEFGKHGLVDNAVEVFNKCTAFN 47
           +  +I  MK Y+  LS+S Q           TL+++I  F     +  A  V  K     
Sbjct: 156 LLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLLKLG 215

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           CQ     +N+L+  LC       A  L  + I +GF PD  TY  L+N  C  G    A 
Sbjct: 216 CQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAI 275

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
             L+ M  K   P V   + ++  L     +  A  + ++MI +G   D+ T+NSLI  +
Sbjct: 276 RLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHAL 335

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           C   E +    +   +    +  +V  +  ++ A+ K GMI  A  ++  +++ G +P  
Sbjct: 336 CNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDV 395

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++ G   R + D+A   F  M  KG  PN   Y +LI    +  R  +A   L +
Sbjct: 396 VTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQ 455

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGK 312
           M+  GL   +  ++ +  GL + G+
Sbjct: 456 MSLQGLIADTVTYNTLIHGLCHVGR 480



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 131/292 (44%), Gaps = 2/292 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+  FN+    +     + +  LL ++ ++K +    +L  +M   G  PD  T  I
Sbjct: 131 LDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNI 190

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N++C   ++  A   L ++   G  P     + L++GL   G +  A  + +K I +G
Sbjct: 191 LINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGEG 250

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D+ T+ +L+  +CK G     + +  S+ +     +V  Y  +I ++ K   + EAF
Sbjct: 251 FQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAF 310

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   ++  G  P    Y  +I  +    ++       +EM      PN  V++ ++   
Sbjct: 311 NLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDAL 370

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            + G    A + +  M + G+ P    +  + DG  +C + ++ E +++ + 
Sbjct: 371 CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDG--HCLRSEMDEAVKVFDT 420


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 39/337 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F++         +  YNSL+ ALC +  +    AL+  M+   
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+   ++ +V+A C  GK+ EA + +  M  +G  P V   + L+ G      ++ A 
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + M+ +GF  D+ ++++LI   CK   +E  + ++  +C+  L  +  TY  L+  +
Sbjct: 325 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384

Query: 203 SKAGMIDEAFRLLHNLVEDGHKP-FPS--------------------------------- 228
              G + +A  L H +V  G  P F S                                 
Sbjct: 385 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 444

Query: 229 -LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            +Y  +I GM R G+ + A   FS +  KG  PN   YT++I    + G   EA+    E
Sbjct: 445 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 504

Query: 288 MTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
           M   G +P    ++L+T G L+N   ++    I+LL+
Sbjct: 505 MKRKGYSPNGCTYNLITRGFLRN---NETLRGIQLLQ 538



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 2/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+ +       NCQ  V++Y S++ +LC+ +    A+ L   M
Sbjct: 166 TYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEM 225

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P   TY  L++A C+  + +     L EM +    P V     +V  L   G +
Sbjct: 226 IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKV 285

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKI 197
             A  +V+ MIK+G   ++ T+N+L++  C   E++  V+++ + VCK G   DV +Y  
Sbjct: 286 MEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK-GFAPDVVSYST 344

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   I++A  L   +      P    Y+ ++ G+   G+  DA   F EM  +G
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 404

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +L+    +  R  EA   L  +    + P  + + +V DG+   G+ + A 
Sbjct: 405 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 464

Query: 318 KI 319
            +
Sbjct: 465 DL 466



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 9/328 (2%)

Query: 2   WKTIE--LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +   L +  N  + P  +  S +++   K G V  A +V +       +  V+ YN+
Sbjct: 250 WKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNA 309

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+ KGF PD  +Y+ L+N +C   ++ +A    +EM  K 
Sbjct: 310 LMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE 369

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P       L+ GL + G L+ A  + ++M+ +G + D  ++  L++ +CK+  ++  +
Sbjct: 370 LIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAI 429

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    +  D+  Y I+I  + +AG ++ A  L  NL   G  P    Y  +I G+
Sbjct: 430 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 489

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-I 296
            ++G   +A   F EMK KG+ PN   Y ++     R    +     L EM   G +  +
Sbjct: 490 CQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADV 549

Query: 297 SRCFDLV----TDGLKNCGKHDLAEKIE 320
           S    LV     DGL    K  L+E ++
Sbjct: 550 STSTVLVEMLSDDGLDQSVKQILSEFLQ 577



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G +   + +F+K      Q  V+ Y +L+  LC+V     A  L+R M
Sbjct: 131 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 190

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD   Y  ++++ C   ++ +A     EM  +G +P +   + L+  L N    
Sbjct: 191 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 250

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    ++N+M+    + ++  F+++++ +CK G+V    ++   + K G+  +V TY  L
Sbjct: 251 KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 310

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +DEA ++   +V  G  P    Y+ +I G  +  + + A   F EM  K  
Sbjct: 311 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 370

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y+ L+      GR  +A     EM   G  P    + ++ D L  C    L E 
Sbjct: 371 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL--CKNRRLDEA 428

Query: 319 IELLE 323
           I LL+
Sbjct: 429 IALLK 433



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           LS+ P  LS     F    L    +D+A+  FN+    +    +  +  LL ++ ++K +
Sbjct: 16  LSLPPHFLSSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHY 75

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
               +L  +M   G  P+  T  IL+N++C   ++  A   L ++   G  P +   + L
Sbjct: 76  STVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTL 135

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G +     + +KMI +GF  ++ T+ +LI  +CK G     + +  S+ +   
Sbjct: 136 IRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNC 195

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV  Y  +I ++ K   + +AF L   ++  G  P    Y  +I  +    ++     
Sbjct: 196 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 255

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EM      PN  +++ ++    + G+ +EA + +  M + G+ P    ++ + DG  
Sbjct: 256 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG-- 313

Query: 309 NCGKHDLAEKIELLEV 324
           +C + ++ E +++ + 
Sbjct: 314 HCLRSEMDEAVKVFDT 329



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 127/305 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     +  A  V  K      Q  +  +N+L+  LC    
Sbjct: 85  MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGK 144

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 145 IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 204

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + ++MI QG    + T+NSLI  +C   E +    +   +    
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +V  +  ++ A+ K G + EA  ++  +++ G +P    Y  ++ G   R + D+A 
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   Y+ LI    +  R  +A     EM    L P +  +  +  GL
Sbjct: 325 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 384

Query: 308 KNCGK 312
            + G+
Sbjct: 385 CHVGR 389


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  117 bits (293), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 135/300 (45%), Gaps = 16/300 (5%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK------GFVPD 86
           +  A  +F +     C   V+ Y +L+  LC     + A  L + M+           P+
Sbjct: 155 ISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPN 214

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMS----------DKGFNPPVRGRDLLVQGLLNAG 136
             TY I+V+  C  G+  EA++  +EM           D+G  P +   ++L+  L   G
Sbjct: 215 VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEG 274

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            +  AK+++  MI+ G V DL T+NSLIE  C  G++    E++ S+   G   DV +Y 
Sbjct: 275 KVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYN 334

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +LI   SK   ++EA +L + ++  G +P    Y  ++KG+F  G+ DDA   FS MK  
Sbjct: 335 VLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAH 394

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G   N   Y + +    +     EA     E+            + + DGL   GK + A
Sbjct: 395 GIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETA 454



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 129/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G V  A ++            ++ YNSL+   C V   + A  L   M
Sbjct: 262 TFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  +Y +L+N +  + K+ EA +   EM   G  P V   D L++G+  AG +
Sbjct: 322 PSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKV 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK++ + M   G   +  T+   ++ +CK+  +   ++++  +       ++     L
Sbjct: 382 DDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCL 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG ++ A+ L   L  +GH+P    Y  +I G  R GQ D A     +M+  G 
Sbjct: 442 IDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGC 501

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y  L+       +  E    L  M +  ++P +    +V D L
Sbjct: 502 TPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDML 550



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 18/294 (6%)

Query: 42  KCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101
           + +  +  +C L  N LL  LC V      +A    ++R+G+ P+  TY  L+   C   
Sbjct: 96  RLSGLSSDRCTL--NILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEH 153

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--- 158
           ++ EA      M   G  P V     L++GL   G +  A ++  +M+      ++    
Sbjct: 154 RISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKP 213

Query: 159 ---TFNSLIETICKSGEVEFCVEMY----------YSVCKLGLCADVSTYKILIPAVSKA 205
              T+N +++ +CK G  +   +++            +   GL  D+ T+ +LI  + K 
Sbjct: 214 NVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKE 273

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G + EA +LL  ++E G  P    Y  +I+G    G  + A   F  M  KG  P+   Y
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +LI    +  +  EA     EM  +G  P    +D +  G+   GK D A+K+
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKL 387



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 89/177 (50%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   +MK + ++ +  T  + ++   K+  +  A+++F +  + N +  +   N L+  L
Sbjct: 386 KLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGL 445

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A+ L  ++  +G  P+  TY I+++ +C  G++ +A   +Q+M   G  P +
Sbjct: 446 CKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDI 505

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
              + L++G   +  LE   Q++++M ++    D  T + +++ + K  + + C+ +
Sbjct: 506 ITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHL 562



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 96/260 (36%), Gaps = 58/260 (22%)

Query: 98  CSSGKMR--EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           C +G +    A  F   M      P +   + L+ GL    +      + N+M   G   
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 156 DLETFNSLIETICKSGEVE---------------------------FCVE--------MY 180
           D  T N L+  +C    +                             C+E        ++
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED------GHKPFPSLYAPII 234
             + KLG   DV TY  LI  +   G I+ A +L   ++ D        KP    Y  I+
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPN-------RP---VYTMLITMCGRGGRFVEAANY 284
            G+ + G+ D+A   F EMK +G  PN       +P    + +LI    + G+ +EA   
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKL 282

Query: 285 LVEMTEMGLTPISRCFDLVT 304
           L  M E G+ P     DLVT
Sbjct: 283 LGVMIESGIVP-----DLVT 297



 Score = 43.5 bits (101), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 46/109 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E +       +  T +++I  F + G VD A  +  K  A  C   ++ YN+L+  
Sbjct: 455 WELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRG 514

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
             E         L+ RM +K   PD  T +I+V+      K +E    L
Sbjct: 515 FYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 563


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +    L  D  TY  LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 306 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 365

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 366 PDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 125 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 184

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 185 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 244

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +     KP    Y  +
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTL 304

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 305 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGL 364

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P SR + ++ +    C K D+ +  +LL+
Sbjct: 365 KPDSRTYTMIINEF--CKKGDVWKGSKLLK 392



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 120/265 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 147 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 206

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 207 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 266

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +    D  T+ +LI+  CK G+++   E    + +
Sbjct: 267 NTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ 326

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 327 ENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWK 386

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
                 EM+  GH P+   Y +L+ 
Sbjct: 387 GSKLLKEMQRDGHVPSVVTYNVLMN 411



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 136/294 (46%), Gaps = 21/294 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG----------FVPDKRT-------YAILVNA 96
           Y +++  LC  ++   A +LI+ ++ RKG           V  K T       ++ L+ A
Sbjct: 3   YCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLITA 62

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +  F  P      +++ L+   Y +       ++++ G+   
Sbjct: 63  YLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPAS 122

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G +DE FRL  
Sbjct: 123 LYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS 182

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T LI    + G
Sbjct: 183 AMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNG 242

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           R   A     +M    L+P    ++ +  GL  C K DL +   L+ E+S++ +
Sbjct: 243 RVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLIDEMSMKEL 294



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 99/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 195 TYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++A   + EMS K   P       L+ G    G L
Sbjct: 255 LSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDL 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 315 DSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMI 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 375 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 37/263 (14%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +     ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 94  VLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 153

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M+  G                         
Sbjct: 154 LRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASG------------------------- 188

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
                     +  DV TY +LI  + K   +D+A  L   ++  G  P    +  +I G 
Sbjct: 189 ----------VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGH 238

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+ D A   + +M  +   P+   Y  LI    + G   +A + + EM+   L P  
Sbjct: 239 CKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDK 298

Query: 298 RCFDLVTDGLKNCGKHDLAEKIE 320
             +  + DG   C + DL    E
Sbjct: 299 ITYTTLIDGC--CKEGDLDSAFE 319


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 39/337 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K   V  A  +F++         +  YNSL+ ALC +  +    AL+  M+   
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+   ++ +V+A C  GK+ EA + +  M  +G  P V   + L+ G      ++ A 
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++ + M+ +GF  D+ ++++LI   CK   +E  + ++  +C+  L  +  TY  L+  +
Sbjct: 334 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393

Query: 203 SKAGMIDEAFRLLHNLVEDGHKP-FPS--------------------------------- 228
              G + +A  L H +V  G  P F S                                 
Sbjct: 394 CHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDI 453

Query: 229 -LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            +Y  +I GM R G+ + A   FS +  KG  PN   YT++I    + G   EA+    E
Sbjct: 454 QIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGE 513

Query: 288 MTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
           M   G +P    ++L+T G L+N   ++    I+LL+
Sbjct: 514 MKRKGYSPNGCTYNLITRGFLRN---NETLRGIQLLQ 547



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 2/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+ +       NCQ  V++Y S++ +LC+ +    A+ L   M
Sbjct: 175 TYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEM 234

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P   TY  L++A C+  + +     L EM +    P V     +V  L   G +
Sbjct: 235 IHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKV 294

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKI 197
             A  +V+ MIK+G   ++ T+N+L++  C   E++  V+++ + VCK G   DV +Y  
Sbjct: 295 MEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCK-GFAPDVVSYST 353

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   I++A  L   +      P    Y+ ++ G+   G+  DA   F EM  +G
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRG 413

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +L+    +  R  EA   L  +    + P  + + +V DG+   G+ + A 
Sbjct: 414 QIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAAR 473

Query: 318 KI 319
            +
Sbjct: 474 DL 475



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 9/328 (2%)

Query: 2   WKTIE--LMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +   L +  N  + P  +  S +++   K G V  A +V +       +  V+ YN+
Sbjct: 259 WKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNA 318

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C       A  +   M+ KGF PD  +Y+ L+N +C   ++ +A    +EM  K 
Sbjct: 319 LMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE 378

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P       L+ GL + G L+ A  + ++M+ +G + D  ++  L++ +CK+  ++  +
Sbjct: 379 LIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAI 438

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +  ++    +  D+  Y I+I  + +AG ++ A  L  NL   G  P    Y  +I G+
Sbjct: 439 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGL 498

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-I 296
            ++G   +A   F EMK KG+ PN   Y ++     R    +     L EM   G +  +
Sbjct: 499 CQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADV 558

Query: 297 SRCFDLV----TDGLKNCGKHDLAEKIE 320
           S    LV     DGL    K  L+E ++
Sbjct: 559 STSTVLVEMLSDDGLDQSVKQILSEFLQ 586



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 135/305 (44%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G +   + +F+K      Q  V+ Y +L+  LC+V     A  L+R M
Sbjct: 140 TFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSM 199

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    PD   Y  ++++ C   ++ +A     EM  +G +P +   + L+  L N    
Sbjct: 200 EQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEW 259

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    ++N+M+    + ++  F+++++ +CK G+V    ++   + K G+  +V TY  L
Sbjct: 260 KHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 319

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +DEA ++   +V  G  P    Y+ +I G  +  + + A   F EM  K  
Sbjct: 320 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKEL 379

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y+ L+      GR  +A     EM   G  P    + ++ D L  C    L E 
Sbjct: 380 IPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYL--CKNRRLDEA 437

Query: 319 IELLE 323
           I LL+
Sbjct: 438 IALLK 442



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 144/316 (45%), Gaps = 6/316 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGL----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           LS+ P  LS     F    L    +D+A+  FN+    +    +  +  LL ++ ++K +
Sbjct: 25  LSLPPHFLSSSHNTFHSKSLNFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHY 84

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
               +L  +M   G  P+  T  IL+N++C   ++  A   L ++   G  P +   + L
Sbjct: 85  STVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTL 144

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           ++GL   G +     + +KMI +GF  ++ T+ +LI  +CK G     + +  S+ +   
Sbjct: 145 IRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNC 204

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV  Y  +I ++ K   + +AF L   ++  G  P    Y  +I  +    ++     
Sbjct: 205 QPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTA 264

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
             +EM      PN  +++ ++    + G+ +EA + +  M + G+ P    ++ + DG  
Sbjct: 265 LLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG-- 322

Query: 309 NCGKHDLAEKIELLEV 324
           +C + ++ E +++ + 
Sbjct: 323 HCLRSEMDEAVKVFDT 338



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 127/305 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     +  A  V  K      Q  +  +N+L+  LC    
Sbjct: 94  MDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGK 153

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L  +MI +GF P+  TY  L+N  C  G    A   L+ M      P V     
Sbjct: 154 IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTS 213

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     +  A  + ++MI QG    + T+NSLI  +C   E +    +   +    
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +V  +  ++ A+ K G + EA  ++  +++ G +P    Y  ++ G   R + D+A 
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   Y+ LI    +  R  +A     EM    L P +  +  +  GL
Sbjct: 334 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGL 393

Query: 308 KNCGK 312
            + G+
Sbjct: 394 CHVGR 398


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 130/278 (46%), Gaps = 3/278 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  T + +I      G +  A+++F+K T    Q  VL Y +L+  LC+ +    A +L 
Sbjct: 79  STATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLF 138

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ KG  P+  TY+ L++  C  G  +EA      M  +   P     + LV  L   
Sbjct: 139 SDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKE 198

Query: 136 GY---LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           G    ++ A  +  +M +QG + D  T+N+LI  +C  G +   + +++ +   G   D+
Sbjct: 199 GMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDL 258

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY+IL   + K   + EA  LL  +      P   +Y+ ++ GM R G+ + A   FS+
Sbjct: 259 VTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSK 318

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           +  KG  P+   YT++I    + G   EA+    EM E
Sbjct: 319 LSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 356



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 3/288 (1%)

Query: 35  NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
             + ++ +  +F         N L+ + C +     A++++  +++ G+ P   T+  L+
Sbjct: 28  TVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLI 87

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
              C  GK+ EA +   +M+ +GF P V     L+ GL     L  A  + + M+ +G  
Sbjct: 88  RGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGIS 147

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI---DEA 211
            +  T++SLI  +C  G  +  + ++Y++    +  D  T+  L+ A+ K GMI   D+A
Sbjct: 148 PNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKA 207

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L   + + G  P    Y  +I G+   G+  DA   F EM + G  P+   Y +L   
Sbjct: 208 MGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDY 267

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             +  R  EA   L  +    L P    + +V DG+   G+ + A  +
Sbjct: 268 LCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 315



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 5/317 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     +  A  V         Q     + +L+  LC    
Sbjct: 36  MDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGK 95

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +M  +GF PD  TY  L+N  C   ++ EA     +M  KG +P       
Sbjct: 96  IGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSS 155

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF---CVEMYYSVC 184
           L+ GL   G+ + A ++   MI +  + D  TFN+L++ +CK G ++     + ++  + 
Sbjct: 156 LIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMS 215

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL  D  TY  LI  +   G + +A  L H +V  G  P    Y  +   + +  +  
Sbjct: 216 QQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 275

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A      ++     P+  +Y++++    R G    A +   +++  GL P  R + ++ 
Sbjct: 276 EAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMI 335

Query: 305 DGLKNCGKHDLAEKIEL 321
           +GL  C +  LAE  +L
Sbjct: 336 NGL--CQQGLLAEASKL 350



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 5/273 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++ LL ++  +K +    +L ++M   G   +  T  IL+N++C   ++  A   L ++ 
Sbjct: 13  FSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL 72

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G+ P       L++GL   G +  A Q+ +KM  +GF  D+ T+ +LI  +CK  ++ 
Sbjct: 73  KLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLT 132

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++  +   G+  +  TY  LI  +   G   EA RL + ++     P    +  ++
Sbjct: 133 EALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLV 192

Query: 235 KGMFRRGQF---DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             + + G     D A   F EM  +G  P+   Y  LI      GR  +A     EM   
Sbjct: 193 DALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVY 252

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           G  P    + ++ D L  C  H LAE + LL+V
Sbjct: 253 GQIPDLVTYRILFDYL--CKNHRLAEAMVLLKV 283



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 109/258 (42%), Gaps = 38/258 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K   +  A+ +F+   A         Y+SL+  LC +  +  A  L   M
Sbjct: 117 TYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGK---MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           I +  +PD+ T+  LV+A C  G    M +A    +EMS +G  P     + L+ GL + 
Sbjct: 177 IHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHV 236

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-------------------------- 169
           G L  A  + ++M+  G + DL T+  L + +CK                          
Sbjct: 237 GRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIY 296

Query: 170 ---------SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                    +GE+E   +++  +   GL  DV TY I+I  + + G++ EA +L   + E
Sbjct: 297 SIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDE 356

Query: 221 DGHKPFPSLYAPIIKGMF 238
           +  + + +      KG+F
Sbjct: 357 NDIESYSTFSRNAFKGIF 374


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G +D A  + NK  A   +  V+++N+++ +LC+ +    A  L + M
Sbjct: 152 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 211

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L++  CS G+  +A + L +M +K  NP +   + L+   +  G  
Sbjct: 212 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 271

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + MIK+    D+ T+NSLI   C    ++   +M+  +       D+ TY  L
Sbjct: 272 VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +++   L   +   G       Y  +I+G+F  G  D+A   F +M   G 
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           PP+   Y++L+      G+  +A      M +  +      +  + +G+   GK D
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G    A ++ +     +    +  YNSL+   C       A  +   M
Sbjct: 257 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C S ++ +  E  +EMS +G          L+QGL + G  
Sbjct: 317 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 376

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+++  +M+  G   D+ T++ L++ +C +G++E  +E++  + K  +  D+  Y  +
Sbjct: 377 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 436

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +D+ + L  +L   G KP    Y  +I G+  +    +A+    +MK  G 
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 496

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            P+   Y  LI    R G    +A  + EM
Sbjct: 497 LPDSGTYNTLIRAHLRDGDKAASAELIREM 526



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 2/243 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T + +I  F  H  +D A ++F    + +C   +  YN+L+   C+ K     
Sbjct: 285 SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDG 344

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M  +G V D  TY  L+      G    AQ+  ++M   G  P +    +L+ G
Sbjct: 345 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G LE A ++ + M K    LD+  + ++IE +CK+G+V+   +++ S+   G+  +
Sbjct: 405 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 464

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  +I  +    ++ EA+ LL  + EDG  P    Y  +I+   R G    +     
Sbjct: 465 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIR 524

Query: 252 EMK 254
           EM+
Sbjct: 525 EMR 527



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 140/303 (46%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I     +G   +A ++ +          ++ +N+L+ A  +   F  A  L   M
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++   PD  TY  L+N +C   ++ +A++  + M  K   P +   + L++G   +  +
Sbjct: 282 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 341

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M  +G V D  T+ +LI+ +   G+ +   +++  +   G+  D+ TY IL
Sbjct: 342 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 401

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +++A  +   + +   K    +Y  +I+GM + G+ DD +  F  + +KG 
Sbjct: 402 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 461

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAE 317
            PN   Y  +I+         EA   L +M E G  P S  ++ L+   L++  K   AE
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 521

Query: 318 KIE 320
            I 
Sbjct: 522 LIR 524



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 113/241 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A AL+ +M++ G+ P   T + L+N +C   ++ +A   + +M 
Sbjct: 48  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 107

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P       L+ GL        A  +V++M+++G   +L T+  ++  +CK G+++
Sbjct: 108 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDID 167

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +    + ADV  +  +I ++ K   +D+A  L   +   G +P    Y+ +I
Sbjct: 168 LAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 227

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  K   PN   +  LI    + G+FVEA     +M +  + 
Sbjct: 228 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSID 287

Query: 295 P 295
           P
Sbjct: 288 P 288



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y  ++  LC+      A+ L+ +M
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 176

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   +  ++++ C    + +A    +EM  KG  P V     L+  L + G  
Sbjct: 177 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 236

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+++ MI++    +L TFN+LI+   K G+     +++  + K  +  D+ TY  L
Sbjct: 237 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 296

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +D+A ++   +V     P    Y  +IKG  +  + +D    F EM  +G 
Sbjct: 297 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 356

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI      G    A     +M   G+ P    + ++ DGL N GK  L + 
Sbjct: 357 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK--LEKA 414

Query: 319 IELLEVSLRS 328
           +E+ +   +S
Sbjct: 415 LEVFDYMQKS 424



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 121/265 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +S +  T +++I  F +   +  A+ +  K      +  ++  +SLL   C  
Sbjct: 34  EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 93

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K    A AL+ +M+  G+ PD  T+  L++      K  EA   +  M  +G  P +   
Sbjct: 94  KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            ++V GL   G ++ A  ++NKM       D+  FN++I+++CK   V+  + ++  +  
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  LI  +   G   +A +LL +++E    P    +  +I    + G+F +
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
           A     +M  +   P+   Y  LI 
Sbjct: 274 AEKLHDDMIKRSIDPDIFTYNSLIN 298



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G  DNA +VF +  +      ++ Y+ LL  LC       A  +   M
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  ++   C +GK+ +  +    +S KG  P V   + ++ GL +   L
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 481

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ KM + G + D  T+N+LI    + G+     E+   +       D ST   L
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-L 540

Query: 199 IPAVSKAGMIDEAF 212
           +  +   G +D++F
Sbjct: 541 VANMLHDGRLDKSF 554



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + M+   + +     + +IE   K G VD+  ++F   +    +  V+ YN+++  LC  
Sbjct: 419 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVR 123
           +L   AYAL+++M   G +PD  TY  L+ A    G    + E ++EM    F  +    
Sbjct: 479 RLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTI 538

Query: 124 GRDLLVQGLLNAGYLESA 141
           G   LV  +L+ G L+ +
Sbjct: 539 G---LVANMLHDGRLDKS 553



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           FN L+  I K  + +  + +   + +LG+  ++ TY ILI    +   I  A  LL  ++
Sbjct: 13  FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 72

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G++P     + ++ G     +  DA     +M   G+ P+   +T LI       +  
Sbjct: 73  KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 132

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           EA   +  M + G  P    + +V +GL   G  DLA
Sbjct: 133 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169


>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
          Length = 1042

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 146/332 (43%), Gaps = 9/332 (2%)

Query: 3   KTIELMKPYNL----SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           + +E+ +  NL    S + + L+ I+   GK      AVE+F +  A +    V +YN++
Sbjct: 145 RALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAAS-GNTVQVYNAM 203

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE--AQEFLQEMSDK 116
           +        F     L+  M  +G  PD  ++  L+NA   SG M    A E L E+   
Sbjct: 204 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 263

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+        LE A ++ N M+      DL T+N++I    + G     
Sbjct: 264 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 323

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +   G   D  TY  L+ A ++ G +D+   +  ++V+ G       Y  II  
Sbjct: 324 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 383

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +RGQ D AF  +S+MK+ G  P+   YT+LI   G+     EAA  + EM    + P 
Sbjct: 384 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 443

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            R F  +  G    GK   AE  E  +  LRS
Sbjct: 444 LRTFSALICGYAKAGKRVEAE--ETFDCMLRS 473



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 4/300 (1%)

Query: 21  SLIIEEFGKHGLVDN-AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           +LI        +V N A+E+ N+      Q  ++ YN+L+ A         A  +   M+
Sbjct: 237 TLINARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMV 296

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                PD  TY  +++ +   G  REA    +++  KGF P     + L+      G ++
Sbjct: 297 AHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVD 356

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
             K++   M+K GF  D  T+N++I    K G+ +   ++Y  +   G   D  TY +LI
Sbjct: 357 KVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLI 416

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            ++ KA MI EA  ++  ++    KP    ++ +I G  + G+  +A   F  M   G  
Sbjct: 417 DSLGKANMIKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIK 476

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y++++ +  R     +A     EM      P    ++++   L+  GK +  E +
Sbjct: 477 PDHLAYSVMLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVM---LRVLGKENREEDV 533



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 3/291 (1%)

Query: 4   TIELMKPYNLS-VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            IEL+     S + P   T + +I    +   ++ AV+V+N   A  CQ  +  YN+++ 
Sbjct: 253 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 312

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                 +   A  L + +  KGF+PD  TY  L+ A+   G + + +E  ++M   GF  
Sbjct: 313 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 372

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++      G  + A Q+ + M   G   D  T+  LI+++ K+  ++   E+ 
Sbjct: 373 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 432

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +    +   + T+  LI   +KAG   EA      ++  G KP    Y+ ++  + R 
Sbjct: 433 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 492

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +   A   + EM +    P+  +Y +++ + G+  R  +    + +M E+
Sbjct: 493 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEEL 543



 Score = 40.8 bits (94), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + +MK   +  +  T+ L++  +   G  + A +V +           L Y+S++ A 
Sbjct: 630 KLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAY 689

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +    + A   +  M + G  PD R +   V A   S    EA   L+ + D GF+ P+
Sbjct: 690 LKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPI 749

Query: 123 R 123
           R
Sbjct: 750 R 750


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 128/270 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G    A ++++     +    +  YNSL+   C       A  +   M
Sbjct: 294 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 353

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C S ++ +  E  +EMS +G          L+QGL + G  
Sbjct: 354 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 413

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+++  +M+  G   D+ T++ L++ +C +G++E  +E++  + K  +  D+  Y  +
Sbjct: 414 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 473

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +D+ + L  +L   G KP    Y  +I G+  +    +A+    +MK  G 
Sbjct: 474 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 533

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            PN   Y  LI    R G    +A  + EM
Sbjct: 534 LPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G  D A+ + NK  A   +  V+++N+++ +LC+ +    A  L + M
Sbjct: 189 TYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 248

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L++  CS G+  +A + L +M +K  NP +   + L+   +  G  
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 308

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + MIK+    D+ T+NSL+   C    ++   +M+  +       DV TY  L
Sbjct: 309 VEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +++   L   +   G       Y  +I+G+F  G  D+A   F +M   G 
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           PP+   Y++L+      G+  +A      M +  +      +  + +G+   GK D
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 484



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 2/243 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T + ++  F  H  +D A ++F    + +C   V+ YN+L+   C+ K     
Sbjct: 322 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDG 381

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M  +G V D  TY  L+      G    AQ+  ++M   G  P +    +L+ G
Sbjct: 382 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 441

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G LE A ++ + M K    LD+  + ++IE +CK+G+V+   +++ S+   G+  +
Sbjct: 442 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 501

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  +I  +    ++ EA+ LL  + EDG  P    Y  +I+   R G    +     
Sbjct: 502 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIR 561

Query: 252 EMK 254
           EM+
Sbjct: 562 EMR 564



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 140/303 (46%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I     +G   +A ++ +          ++ +N+L+ A  +   F  A  L   M
Sbjct: 259 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 318

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++   PD  TY  LVN +C   ++ +A++  + M  K   P V   + L++G   +  +
Sbjct: 319 IKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRV 378

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M  +G V D  T+ +LI+ +   G+ +   +++  +   G+  D+ TY IL
Sbjct: 379 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 438

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +++A  +   + +   K    +Y  +I+GM + G+ DD +  F  + +KG 
Sbjct: 439 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 498

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAE 317
            PN   Y  +I+         EA   L +M E G  P S  ++ L+   L++  K   AE
Sbjct: 499 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 558

Query: 318 KIE 320
            I 
Sbjct: 559 LIR 561



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 118/252 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L+   C       A AL+ +M++ G+ P   T + L+N +C   ++ +A   + +M 
Sbjct: 85  YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 144

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P       L+ GL        A  +V++M+++G   +L T+  ++  +CK G+ +
Sbjct: 145 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 204

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   +    + ADV  +  +I ++ K   +D+A  L   +   G +P    Y+ +I
Sbjct: 205 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 264

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  K   PN   +  LI    + G+FVEA     +M +  + 
Sbjct: 265 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 324

Query: 295 PISRCFDLVTDG 306
           P    ++ + +G
Sbjct: 325 PDIFTYNSLVNG 336



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y  ++  LC+      A  L+ +M
Sbjct: 154 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 213

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   +  ++++ C    + +A    +EM  KG  P V     L+  L + G  
Sbjct: 214 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 273

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+++ MI++    +L TFN+LI+   K G+     ++Y  + K  +  D+ TY  L
Sbjct: 274 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSL 333

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +D+A ++   +V     P    Y  +IKG  +  + +D    F EM  +G 
Sbjct: 334 VNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGL 393

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI      G    A     +M   G+ P    + ++ DGL N GK  L + 
Sbjct: 394 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK--LEKA 451

Query: 319 IELLEVSLRS 328
           +E+ +   +S
Sbjct: 452 LEVFDYMQKS 461



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 115/252 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I  F +   +  A+ +  K      +  ++  +SLL   C  K    A AL+ +M
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G+ PD  T+  L++      K  EA   +  M  +G  P +    ++V GL   G  
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 203

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++NKM       D+  FN++I+++CK   V+  + ++  +   G+  +V TY  L
Sbjct: 204 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 263

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G   +A +LL +++E    P    +  +I    + G+F +A   + +M  +  
Sbjct: 264 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 323

Query: 259 PPNRPVYTMLIT 270
            P+   Y  L+ 
Sbjct: 324 DPDIFTYNSLVN 335



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G  DNA +VF +  +      ++ Y+ LL  LC       A  +   M
Sbjct: 399 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 458

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  ++   C +GK+ +  +    +S KG  P V   + ++ GL +   L
Sbjct: 459 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 518

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ KM + G + +  T+N+LI    + G+     E+   +       D ST   L
Sbjct: 519 QEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-L 577

Query: 199 IPAVSKAGMIDEAF 212
           +  +   G +D++F
Sbjct: 578 VANMLHDGRLDKSF 591



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 2/162 (1%)

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           KM +   V  L T+N LI   C+  ++   + +   + KLG    + T   L+       
Sbjct: 72  KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 131

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            I +A  L+  +VE G++P    +  +I G+F   +  +A      M  +G  PN   Y 
Sbjct: 132 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 191

Query: 267 MLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +++  +C RG   + A N L +M    +      F+ + D L
Sbjct: 192 VVVNGLCKRGDTDL-ALNLLNKMEAAKIEADVVIFNTIIDSL 232



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 54/108 (50%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + M+   + +     + +IE   K G VD+  ++F   +    +  V+ YN+++  LC  
Sbjct: 456 DYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 515

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +L   AYAL+++M   G +P+  TY  L+ A    G    + E ++EM
Sbjct: 516 RLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 1/192 (0%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R++L  GL +   L+ A  +   M+K   +  +  FN L+  I K  + +  + +   + 
Sbjct: 16  REILRNGLHDMK-LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQ 74

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +L +   + TY ILI    +   I  A  LL  +++ G++P     + ++ G     +  
Sbjct: 75  RLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRIS 134

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     +M   G+ P+   +T LI       +  EA   +  M + G  P    + +V 
Sbjct: 135 DAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVV 194

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 195 NGLCKRGDTDLA 206


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  117 bits (293), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 123/255 (48%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +++L+  LC+         L   M  KG VP+  T+ +L++  C  GK+  A +  Q
Sbjct: 212 VFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQ 271

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G  P +   + L+ GL   G L+ A+++VN+M   G   D  TF +LI+  CK G
Sbjct: 272 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYG 331

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E  +E+   + + G+  D   + +LI  + + G + +A R+L +++  G KP    Y 
Sbjct: 332 DMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYT 391

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++    ++G     F    EM+  GH P    Y  L+    + G+   A   L  M  +
Sbjct: 392 MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNV 451

Query: 292 GLTPISRCFDLVTDG 306
           G+ P    ++++ +G
Sbjct: 452 GVAPNDITYNILLEG 466



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/288 (26%), Positives = 129/288 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G V +A  VF++      +  V+ +N+L+   C+       + L   M 
Sbjct: 145 FNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVME 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            +   PD  T++ L+N  C  G++ E      EM  KG  P      +L+ G    G ++
Sbjct: 205 SERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +    M+ QG   DL T+N+LI  +CK G+++    +   +   GL  D  T+  LI
Sbjct: 265 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ A  +   +VE+G +     +  +I G+ R G+  DA     +M   G  
Sbjct: 325 DGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           P+ P YTM++    + G        L EM   G  P    ++ + +GL
Sbjct: 385 PDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGL 432



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 114/262 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    K G +D    +F++          + +  L+   C+      A    + M
Sbjct: 214 TFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  L+N  C  G ++EA+  + EMS  G  P       L+ G    G +
Sbjct: 274 LAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDM 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA ++  +M+++G  LD   F  LI  +C+ G V     M   +   G   D  TY ++
Sbjct: 334 ESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMV 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +   F+LL  +  DGH P    Y  ++ G+ ++GQ  +A      M   G 
Sbjct: 394 VDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGV 453

Query: 259 PPNRPVYTMLITMCGRGGRFVE 280
            PN   Y +L+    + G  V+
Sbjct: 454 APNDITYNILLEGHSKHGSSVD 475



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 114/252 (45%), Gaps = 3/252 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G VD A++ F    A   +  ++ YN+L+  LC+V     A  L+  M
Sbjct: 249 TFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM 308

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD+ T+  L++  C  G M  A E  + M ++G         +L+ GL   G +
Sbjct: 309 SASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRV 368

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++M+  M+  GF  D  T+  +++  CK G V    ++   +   G    V TY  L
Sbjct: 369 HDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNAL 428

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +  A  LL  ++  G  P    Y  +++G  + G   D   F SE   KG 
Sbjct: 429 MNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGSSVDVDIFNSE---KGL 485

Query: 259 PPNRPVYTMLIT 270
             +   YT L+ 
Sbjct: 486 VKDYASYTALVN 497



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 114/249 (45%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           ++A    ++  G+ P+   + +L++ +C  G +  A+    E+  +G  P V   + L+ 
Sbjct: 126 SWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLIS 185

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   AG +E   ++   M  +    D+ TF++LI  +CK G ++    ++  +C  GL  
Sbjct: 186 GCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVP 245

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  T+ +LI    K G +D A +    ++  G +P    Y  +I G+ + G   +A    
Sbjct: 246 NGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 305

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +EM   G  P+R  +T LI  C + G    A      M E G+      F ++  GL   
Sbjct: 306 NEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRD 365

Query: 311 GKHDLAEKI 319
           G+   AE++
Sbjct: 366 GRVHDAERM 374



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 112/253 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
             +N L+   C+V     A  +   + ++G  P   ++  L++  C +G + E       
Sbjct: 143 FFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGV 202

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  +   P V     L+ GL   G L+    + ++M  +G V +  TF  LI+  CK G+
Sbjct: 203 MESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK 262

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+  ++ +  +   G+  D+ TY  LI  + K G + EA RL++ +   G +P    +  
Sbjct: 263 VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTT 322

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  + G  + A      M  +G   +   +T+LI+   R GR  +A   L +M   G
Sbjct: 323 LIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAG 382

Query: 293 LTPISRCFDLVTD 305
             P    + +V D
Sbjct: 383 FKPDDPTYTMVVD 395



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 110/253 (43%), Gaps = 19/253 (7%)

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
            G   L+RR++R   V  +R++A                 F  E+ D G+ P     ++L
Sbjct: 106 QGCENLLRRVVRLRPVELERSWA-----------------FYLEVLDSGYPPNFFFFNVL 148

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G + SA+ + +++ K+G    + +FN+LI   CK+G VE    +   +    +
Sbjct: 149 MHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERV 208

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
           C DV T+  LI  + K G +DE   L   +   G  P    +  +I G  + G+ D A  
Sbjct: 209 CPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALK 268

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F  M  +G  P+   Y  LI    + G   EA   + EM+  GL P    F  + DG  
Sbjct: 269 NFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGC- 327

Query: 309 NCGKHDLAEKIEL 321
            C   D+   +E+
Sbjct: 328 -CKYGDMESALEI 339



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 4/207 (1%)

Query: 118 FNPPVRGRDLLVQGL--LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           F  PV+G + L++ +  L    LE +     +++  G+  +   FN L+   CK G V  
Sbjct: 101 FPVPVQGCENLLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGS 160

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  + K GL   V ++  LI    KAG ++E FRL   +  +   P    ++ +I 
Sbjct: 161 ARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALIN 220

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+ D+    F EM  KG  PN   +T+LI    +GG+   A      M   G+ P
Sbjct: 221 GLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRP 280

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELL 322
               ++ + +GL  C   DL E   L+
Sbjct: 281 DLVTYNALINGL--CKVGDLKEARRLV 305


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  117 bits (292), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 6/301 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+V+ Q  + II+   KHG +  AVE         C+  ++ YN+L+   C    
Sbjct: 281 MNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGK 340

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+ + + KG +P+K +Y  L++A+C  G    A  +L EM+++G  P +     
Sbjct: 341 VSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGA 400

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           LV GL+ AG ++ A  +  KM+++G   D   +N L+  +CK  ++     +   +    
Sbjct: 401 LVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQS 460

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D   Y  L+    + G +DEA +L    +E G  P    Y  +IKG  + G   DA 
Sbjct: 461 VLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAM 520

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              + MK +   P+   Y+ +I    +      A     EM +M      +C   V DGL
Sbjct: 521 ACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKM------KCKPNVMDGL 574

Query: 308 K 308
           +
Sbjct: 575 Q 575



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L+K   + ++ +   ++++   K G ++   ++        C   ++ YN+L+   C+  
Sbjct: 175 LVKLGRIEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKG 234

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  L   +  KGF+P   TY  ++N +C  G  +     L EM+ +G    V+  +
Sbjct: 235 DMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYN 294

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++      G++  A + +  MI+ G   D+ T+N+LI   C+ G+V    ++       
Sbjct: 295 TIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGK 354

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           GL  +  +Y  LI A  K G  D A   L  + E GHKP    Y  ++ G+   G+ D A
Sbjct: 355 GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVA 414

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                +M  +G  P+  +Y +L++   +  +   A   L EM +  + P +  +  + DG
Sbjct: 415 LTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDG 474

Query: 307 LKNCGKHDLAEKI 319
               G  D A K+
Sbjct: 475 FIRNGNLDEARKL 487



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 124/298 (41%), Gaps = 2/298 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T   II  F K G       +  +  +      V +YN+++ A  +      A   I  
Sbjct: 256 ETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 315

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI  G  PD  TY  L++  C  GK+ EA + L++   KG  P       L+      G 
Sbjct: 316 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGG 375

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A   + +M ++G   DL T+ +L+  +  +GEV+  + +   + + G+  D   Y I
Sbjct: 376 YDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNI 435

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + K   +  A  LL  +++    P   +YA ++ G  R G  D+A   F     KG
Sbjct: 436 LMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKG 495

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             P    Y  +I    + G   +A   +  M +  L P    +  V DG     +HDL
Sbjct: 496 MNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGY--VKQHDL 551


>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Vitis vinifera]
          Length = 1442

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 146/332 (43%), Gaps = 9/332 (2%)

Query: 3   KTIELMKPYNL----SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           + +E+ +  NL    S + + L+ I+   GK      AVE+F +  A +    V +YN++
Sbjct: 170 RALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEAASGN-TVQVYNAM 228

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE--AQEFLQEMSDK 116
           +        F     L+  M  +G  PD  ++  L+NA   SG M    A E L E+   
Sbjct: 229 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 288

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+        LE A ++ N M+      DL T+N++I    + G     
Sbjct: 289 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 348

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +   G   D  TY  L+ A ++ G +D+   +  ++V+ G       Y  II  
Sbjct: 349 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 408

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +RGQ D AF  +S+MK+ G  P+   YT+LI   G+     EAA  + EM    + P 
Sbjct: 409 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNARVKPT 468

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            R F  +  G    GK   AE  E  +  LRS
Sbjct: 469 LRTFSALICGYAKAGKRVEAE--ETFDCMLRS 498



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 3/284 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+ N+      Q  ++ YN+L+ A         A  +   M+     PD  TY  +++
Sbjct: 278 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 337

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G  REA    +++  KGF P     + L+      G ++  K++   M+K GF  
Sbjct: 338 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 397

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+N++I    K G+ +   ++Y  +   G   D  TY +LI ++ KA MI EA  ++
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 457

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++    KP    ++ +I G  + G+  +A   F  M   G  P+   Y++++ +  R 
Sbjct: 458 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 517

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               +A     EM      P    ++++   L+  GK +  E +
Sbjct: 518 NESGKAMKLYQEMVLHSFKPDHALYEVM---LRVLGKENREEDV 558



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 3/291 (1%)

Query: 4   TIELMKPYNLS-VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            IEL+     S + P   T + +I    +   ++ AV+V+N   A  CQ  +  YN+++ 
Sbjct: 278 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 337

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                 +   A  L + +  KGF+PD  TY  L+ A+   G + + +E  ++M   GF  
Sbjct: 338 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 397

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++      G  + A Q+ + M   G   D  T+  LI+++ K+  ++   E+ 
Sbjct: 398 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 457

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +    +   + T+  LI   +KAG   EA      ++  G KP    Y+ ++  + R 
Sbjct: 458 SEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 517

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +   A   + EM +    P+  +Y +++ + G+  R  +    + +M E+
Sbjct: 518 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEEL 568



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 124/305 (40%)

Query: 15   VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            V  +  + +I  +   G  + A  +FN          V   N L+ AL         Y +
Sbjct: 780  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 839

Query: 75   IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            I+ +   GF   K +  ++++A+  +G + E ++  Q M   G+ P +    +++  L  
Sbjct: 840  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 899

Query: 135  AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
               +   + MV++M    F  DL  +NS+++     G+ +   ++Y  + + GL  D  T
Sbjct: 900  GKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 959

Query: 195  YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            Y  LI    +    +E   L+H +   G +P    Y  +I    +    + A   F  + 
Sbjct: 960  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1019

Query: 255  IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             K    +R  Y +++ M    G   +A   L  M E G+ P      L+       G+ +
Sbjct: 1020 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1079

Query: 315  LAEKI 319
             AEK+
Sbjct: 1080 EAEKV 1084



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 30   HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            H L+D A E   K   F+    V ++  ++ A  ++KL+  A +L+  + +K  + D++ 
Sbjct: 731  HYLIDQAEE---KGLLFDD---VSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKV 784

Query: 90   YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +  L++A+ +SG    A+     M   G +P V   + L+Q L+  G L+    ++ ++ 
Sbjct: 785  WNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQ 844

Query: 150  KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
              GF +   +   +++    +G +    ++Y  +   G    +  Y+I+I  ++K   + 
Sbjct: 845  DMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVR 904

Query: 210  EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +   ++  +     KP  S++  ++K     G F      +  ++  G  P+   Y  LI
Sbjct: 905  DVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 964

Query: 270  TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             M  R  R  E  + + EM  +GL P     D     +   GK  + E+ E L
Sbjct: 965  LMYCRDRRPEEGLSLMHEMRRVGLEP---KLDTYKSLISAFGKLQMVEQAEEL 1014



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 2/240 (0%)

Query: 78   MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            M   G+ P    Y I++       ++R+ +  + EM    F P +   + +++     G 
Sbjct: 878  MKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGD 937

Query: 138  LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             +   Q+   + + G   D +T+N+LI   C+    E  + + + + ++GL   + TYK 
Sbjct: 938  FKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKS 997

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-GQFDDAFCFFSEMKIK 256
            LI A  K  M+++A  L   L+    K   S Y  ++K MFR  G    A      MK  
Sbjct: 998  LISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMK-MFRNSGNHSKAEKLLGVMKEA 1056

Query: 257  GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            G  P      +L+      G+  EA   L  +   GL   +  +  V D     G H++A
Sbjct: 1057 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1116



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 125/300 (41%)

Query: 1    MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            ++  I+ ++     +S  +++L+++ F   G +    +++    A      + LY  ++ 
Sbjct: 836  LYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIG 895

Query: 61   ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             L + K      A++  M    F PD   +  ++  +   G  ++  +  Q + + G  P
Sbjct: 896  LLAKGKRVRDVEAMVSEMEVARFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKP 955

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 + L+         E    ++++M + G    L+T+ SLI    K   VE   E++
Sbjct: 956  DEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELF 1015

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
              +       D S Y I++     +G   +A +LL  + E G +P  +    ++      
Sbjct: 1016 EGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGS 1075

Query: 241  GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            GQ ++A      +K++G P +   Y+ +I    + G    A   L+EM + GL P  R +
Sbjct: 1076 GQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIW 1135



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 1/243 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y SLL    E +LF  A  +   M   G  P    Y  +V  +C  G    A   + + 
Sbjct: 678 MYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQA 737

Query: 114 SDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            +KG     V     +++        + A+ +V  + ++  ++D + +N+LI     SG 
Sbjct: 738 EEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGC 797

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            E    ++ ++ + G    V +   L+ A+   G +DE + ++  L + G K   S    
Sbjct: 798 YERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 857

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++      G   +    +  MK  G+ P   +Y ++I +  +G R  +    + EM    
Sbjct: 858 MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAR 917

Query: 293 LTP 295
             P
Sbjct: 918 FKP 920



 Score = 41.2 bits (95), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%)

Query: 3    KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
            K + +MK   +  +  T+ L++  +   G  + A +V +           L Y+S++ A 
Sbjct: 1048 KLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAY 1107

Query: 63   CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +    + A   +  M + G  PD R +   V A   S    EA   L+ + D GF+ P+
Sbjct: 1108 LKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPI 1167

Query: 123  R 123
            R
Sbjct: 1168 R 1168


>gi|224072823|ref|XP_002303899.1| predicted protein [Populus trichocarpa]
 gi|222841331|gb|EEE78878.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 131/294 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           + + +GK  LV  AVE+FN+ T FNC +     NSLL  L +   F  A  L  +    G
Sbjct: 104 LFQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMG 163

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F  +   + +++  W   G+  +A +   EM ++   P V   + L+  L   G L+ AK
Sbjct: 164 FRLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAK 223

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  MIK+G   +  TF  L+E  C  GE     +M + +   G    V  + +L+  +
Sbjct: 224 GLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDL 283

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G IDEA  +LH + +   KP    Y  +I  + + G+  DA+    EM++ G   N 
Sbjct: 284 GKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANA 343

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y ML+    R G F      L  M   G  P    F  +  GL   G  D A
Sbjct: 344 ATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGA 397



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 120/236 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
             +++I+ + + G  + A +VF++      +  V+ YNSL+  LC       A  L+  M
Sbjct: 170 AFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLLEDM 229

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+KG  P+  T+A+L+   C  G+  EA++ + +M  +G  P V    +L+  L   G +
Sbjct: 230 IKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKI 289

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK ++++M K+    D+ T+N LI  +CK G      E+ + +   G  A+ +TY++L
Sbjct: 290 DEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAATYRML 349

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           +    + G  +   ++L+ ++  GH P    +  ++ G+ + G  D A     EM+
Sbjct: 350 VDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEME 405



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 131/282 (46%), Gaps = 4/282 (1%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +CQ+ + +  +L     + +L H A  L  RM R   V   ++   L+N    +G   EA
Sbjct: 95  HCQETIFI--ALFQHYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEA 152

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E   +  + GF       +++++G L  G  E A ++ ++M+++     + T+NSLI  
Sbjct: 153 NELFDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGY 212

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +C++GE++    +   + K G   +  T+ +L+      G  +EA +++ ++   G KP 
Sbjct: 213 LCRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPT 272

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              +  ++  + +RG+ D+A     EMK +   P+   Y +LI    + GR  +A   L 
Sbjct: 273 VVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLF 332

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           EM   G    +  + ++ DG   C   D    +++L   L S
Sbjct: 333 EMQVGGCEANAATYRMLVDGF--CRVGDFEGGLKVLNAMLTS 372



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 126/287 (43%), Gaps = 37/287 (12%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------------- 117
           A  L    +++GF PD  +YA L+            +E L+ + DK              
Sbjct: 47  ALTLFHEYLQRGFKPDYPSYAALLYKLARCQDFGAVEEVLRYVEDKNVHCQETIFIALFQ 106

Query: 118 --------------FNPPVR--------GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                         FN   R          + L+  L++ G+   A ++ +K  + GF L
Sbjct: 107 HYGKAQLVHKAVELFNRMTRFNCVRTSQSLNSLLNVLVDNGWFLEANELFDKGYEMGFRL 166

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +   FN +I+   + GE E   +++  + +  +   V TY  LI  + + G +D+A  LL
Sbjct: 167 NSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPSVVTYNSLIGYLCRNGELDKAKGLL 226

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            ++++ G +P    +A +++G    G+ ++A     +M+ +G  P    + +L++  G+ 
Sbjct: 227 EDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKR 286

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           G+  EA + L EM +  + P    ++++ + L  C +   A+  E+L
Sbjct: 287 GKIDEAKSVLHEMKKRHMKPDVVTYNILINYL--CKEGRAADAYEVL 331



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 70/152 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
              +++ + GK G +D A  V ++    + +  V+ YN L+  LC+      AY ++  M
Sbjct: 275 NFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEM 334

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   +  TY +LV+ +C  G      + L  M   G  P V     LV GL+ +G L
Sbjct: 335 QVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNL 394

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           + A  ++ +M K+  +   + + +L+   C+ 
Sbjct: 395 DGACFVLEEMEKRQMMFCADDWEALVMESCRG 426



 Score = 40.8 bits (94), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 44/109 (40%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  ++     T +++I    K G   +A EV  +     C+     Y  L+   C V  
Sbjct: 299 MKKRHMKPDVVTYNILINYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCRVGD 358

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           F G   ++  M+  G  P   T+  LV     SG +  A   L+EM  +
Sbjct: 359 FEGGLKVLNAMLTSGHFPRVETFRSLVVGLVKSGNLDGACFVLEEMEKR 407


>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
 gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
          Length = 664

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 154/333 (46%), Gaps = 13/333 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+   Y ++    T +++I  F K+ +VD     F + + FNC+  V+ YN+L+  LC  
Sbjct: 157 EMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRA 216

Query: 66  KLFHGAYALIRRMIR--KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A+ +++ M++  K   PD  TY  LV  +C   ++ EA    +EM  +G  P   
Sbjct: 217 GKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDI 276

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L++GL      +  K+++   +  +GFV D  T+N+L+   C +G  +  ++M+  
Sbjct: 277 TYNTLIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKK 336

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-------EDGHKPFPSLYAPIIK 235
           + +L +  D +TY +LI  + + G  + A +L   L        +DG  P  + Y PI  
Sbjct: 337 MKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFD 396

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            + + G+   A   F ++  KG   + P Y  LI    + G F      L+ M      P
Sbjct: 397 FLCKNGKTHKAERVFRQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVP 455

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               + L+ +G    G+  LA K   LE  L+S
Sbjct: 456 DFETYVLLINGFLQKGEPILAYKT--LERMLKS 486



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 134/290 (46%), Gaps = 9/290 (3%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K  +LS    T + ++  +     +D A+ VF +  +   +   + YN+L+  LCEV+ F
Sbjct: 232 KMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTLIKGLCEVQKF 291

Query: 69  HGAYALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                ++   +  +GFVPD  TY  L+NA C +G   EA +  ++M +    P      +
Sbjct: 292 DKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSV 351

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLD-------LETFNSLIETICKSGEVEFCVEMY 180
           L++ L   G  E A+Q+ +K+  +  +L        +  +N + + +CK+G+      ++
Sbjct: 352 LIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVF 411

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   D  +YK LI    K G  +  ++LL  ++   + P    Y  +I G  ++
Sbjct: 412 RQLMKKG-TQDPPSYKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQK 470

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           G+   A+     M    + P   V+  +++   +     E+A+++V M +
Sbjct: 471 GEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLMID 520



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 8/256 (3%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+       R GF  D R+Y ++++    +G +  A+ FL  +  +  N  V+  D    
Sbjct: 43  AFEFFNWASRNGFAHDSRSYFMMLDILGRNGNLNIARNFLFSIERRS-NGSVKIEDRFCN 101

Query: 131 GLL----NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC-K 185
            LL    NAG    A ++ + M   G    + TFNSL+  + K G       ++  +C  
Sbjct: 102 TLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGT 161

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  D  T+ ILI    K  M+DE FR    +     +P    Y  ++ G+ R G+   
Sbjct: 162 YGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRI 221

Query: 246 AFCFFSEM--KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           A      M  K+K   P+   YT L+          EA     EM   GL P    ++ +
Sbjct: 222 AHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNTL 281

Query: 304 TDGLKNCGKHDLAEKI 319
             GL    K D  ++I
Sbjct: 282 IKGLCEVQKFDKIKEI 297



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 110/268 (41%), Gaps = 4/268 (1%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-S 114
           N+LL +     LF+ A  L   M   G  P   T+  L+      G+   A     EM  
Sbjct: 101 NTLLRSYGNAGLFNEAIKLFSLMKSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCG 160

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P     ++L++G      ++   +   +M +     D+ T+N+L++ +C++G+V 
Sbjct: 161 TYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVR 220

Query: 175 FCVEMYYSVCK--LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
               +   + K    L  DV TY  L+        IDEA  +   +V  G KP    Y  
Sbjct: 221 IAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALVVFEEMVSRGLKPNDITYNT 280

Query: 233 IIKGMFRRGQFDD-AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
           +IKG+    +FD         +  +G  P+   Y  L+      G F EA     +M E+
Sbjct: 281 LIKGLCEVQKFDKIKEILGGAVGGRGFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKEL 340

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + P S  + ++   L   G  + AE++
Sbjct: 341 KVQPDSATYSVLIRNLCQRGDFERAEQL 368



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 106/257 (41%), Gaps = 12/257 (4%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+G    A  VF +      Q     Y +L+   C+   F   Y L+  M+R+ +VPD  
Sbjct: 400 KNGKTHKAERVFRQLMKKGTQDPPS-YKTLIIGHCKEGTFEAGYKLLLFMLRRDYVPDFE 458

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ----M 144
           TY +L+N +   G+   A + L+ M    + P       ++  LL   +   +      M
Sbjct: 459 TYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFARESASFVVLM 518

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           +++ I+Q   L   T   L  +  +    +  VE+ Y     G   D+     LI  + +
Sbjct: 519 IDRKIRQNINLSTHTMRLLFGSGLRIKAFQI-VELLYDN---GYMVDMEE---LIGFICQ 571

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G + +A ++L   +E GH    ++   +I+G+ +  +  +AF  +  +  K +      
Sbjct: 572 NGKLLDAQKMLSFCLEKGHNVDINVCNVVIEGLCKMKRPLEAFGLYYMLVEKSNHQQLSC 631

Query: 265 YTMLITMCGRGGRFVEA 281
              L T    GGR  EA
Sbjct: 632 LEGLRTALEAGGRSEEA 648


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 154/313 (49%), Gaps = 2/313 (0%)

Query: 16  SPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  +  + +I+ F K G V+ A ++F +         ++ Y+S++ ALC+ +    A A
Sbjct: 220 SPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEA 279

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ KG +PD  TY  L+  + S+G+ +EA    +EM      P V   ++L+  L 
Sbjct: 280 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLC 339

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++  ++      G +    +++  +   G+  D+ 
Sbjct: 340 KYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIY 399

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 400 TFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQM 459

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
             +G  P++  Y  LI      G  ++A   ++E+   G+      F  + + L   G+ 
Sbjct: 460 IDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRI 519

Query: 314 DLAEKIELLEVSL 326
             A+ I  L V++
Sbjct: 520 MDAQNIFDLTVNV 532



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 135/295 (45%), Gaps = 4/295 (1%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +P   S  +++  +   G + +  ++F+          +  ++ L+ A     +   A  
Sbjct: 360 NPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMI 419

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +   M   G  PD  TY  ++ A C  GKM +A E   +M D+G  P       L+QG  
Sbjct: 420 IFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFC 479

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G L  AK+++ +++  G  LD+  F+S+I  +CK G +     ++     +G   D  
Sbjct: 480 THGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAV 539

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y +L+      G +++A R+   +V  G +P   +Y  ++ G  + G+ D+    F EM
Sbjct: 540 VYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREM 599

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC-FDLVTDGL 307
             KG  P+  +Y ++I      GR V A     EMTE G+  I++C +++V  G 
Sbjct: 600 LQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIA-INKCTYNIVLRGF 653



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 127/269 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    +LM    ++    T S++I+ +   G++D A+ +FN+      +  V+ Y +++ 
Sbjct: 382 MTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIA 441

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC +     A     +MI +G  PDK  Y  L+  +C+ G + +A+E + E+ + G   
Sbjct: 442 ALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRL 501

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +     ++  L   G +  A+ + +  +  G   D   ++ L++  C  G++E  + ++
Sbjct: 502 DIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVF 561

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            ++   G+  +V  Y  L+    K G IDE   L   +++ G KP   LY  II G+F  
Sbjct: 562 DAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVA 621

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           G+   A   F EM   G   N+  Y +++
Sbjct: 622 GRTVPAKVKFHEMTESGIAINKCTYNIVL 650



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 142/295 (48%), Gaps = 3/295 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +  A  C   V+ Y +++    +    + A  L + M+++G  PD 
Sbjct: 200 GKSGQADDLLRMMAEGGAV-CSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDL 258

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ +V+A C +  M +A+ FL++M +KG  P     + L+ G  + G  + A ++  +
Sbjct: 259 VTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +   + D+ T N L+ ++CK G+++   +++ ++   G   DV +YKI++   +  G 
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    ++ +IK     G  D A   F+EM+  G  P+   YT 
Sbjct: 379 LVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTT 438

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           +I    R G+  +A     +M + G+ P    +  +  G   C    L +  EL+
Sbjct: 439 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGF--CTHGSLLKAKELI 491



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ +++     TL++++    K+G +  A +VF+          V  Y  +L        
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L   M+  G  PD  T+++L+ A+ + G + +A     EM D G  P V     
Sbjct: 379 LVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTT 438

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G ++ A +  N+MI QG   D   ++ LI+  C  G +    E+   +   G
Sbjct: 439 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNG 498

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+  +  +I  + K G I +A  +    V  G  P   +Y+ ++ G    G+ + A 
Sbjct: 499 MRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKAL 558

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M   G  PN  VY  L+    + GR  E  +   EM + G+ P +  ++++ DGL
Sbjct: 559 RVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL 618

Query: 308 KNCGK 312
              G+
Sbjct: 619 FVAGR 623



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 132/310 (42%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +  +++ N LL   CE K   
Sbjct: 108 PRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTD 167

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y+IL+ + C  GK  +A + L+ M++ G   +P V    
Sbjct: 168 EALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYT 227

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++      G +  A  +  +M+++G   DL T++S++  +CK+  +         +   
Sbjct: 228 TVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNK 287

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  D  TY  LI   S  G   EA R+   +      P       ++  + + G+  +A
Sbjct: 288 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEA 347

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   Y +++      G  V+  +    M   G+ P    F ++   
Sbjct: 348 RDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKA 407

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 408 YANCGMLDKA 417



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 89/206 (43%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II    K G + +A  +F+           ++Y+ L+   C V     A  +   M+
Sbjct: 506 FSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMV 565

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  P+   Y  LVN +C  G++ E     +EM  KG  P     ++++ GL  AG   
Sbjct: 566 SAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTV 625

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK   ++M + G  ++  T+N ++    K+   +  + ++  +  + +  D+ T   +I
Sbjct: 626 PAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 685

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKP 225
             + +   ++EA  L  ++   G  P
Sbjct: 686 AGMFQTRRVEEAKDLFASISRSGLVP 711


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 141/312 (45%), Gaps = 1/312 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L + P   SL+I    K G       VF       C+  V +Y +L+ A  +   
Sbjct: 321 MEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGN 380

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  L  RM  +GF PD  TY ++VN  C SG++ EA E+ +   D            
Sbjct: 381 VNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSS 440

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG ++ A++   +M+++G   D   +N+LI+ + KSG++E  + ++  + K G
Sbjct: 441 LIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEG 500

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               V TY ILI  + K    +EA +L   +++ G  P  + +  +  G+   G+   A 
Sbjct: 501 CDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARAC 560

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               E+   G  P      M+  +C + GR  +A      + + G     R   ++ + L
Sbjct: 561 KILDELAPMGVIPETAFEDMINVLC-KAGRTEQACKLADGIVDRGREVPGRVRTILINAL 619

Query: 308 KNCGKHDLAEKI 319
           +  G  DLA K+
Sbjct: 620 RKAGNADLAMKL 631



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 129/294 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  FG  G+V+  + V+ +      +  +  +N LL  L        A  +   M    
Sbjct: 196 LIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGK 255

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  +Y  ++  +C +G  ++A E   +M  +   P       L+Q   + G  +S  
Sbjct: 256 IGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCL 315

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M ++G  +    ++ +I  +CK G       ++ ++ K G  A+V+ Y  LI A 
Sbjct: 316 HLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAY 375

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G ++EA  L   +  +G +P    Y  I+ G+ + G+ D+A  +F   K      N 
Sbjct: 376 GKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNA 435

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y+ LI   G+ GR  EA  +  EM E G    S C++ + D L   GK + A
Sbjct: 436 MFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEA 489



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 2/318 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  E+M+   +     + + +I+ + K G    A+E F      N +   + Y +L+ A 
Sbjct: 246 RVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQAC 305

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                F     L + M  +G       Y++++   C  G+  E     + M+ KG    V
Sbjct: 306 YSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANV 365

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+      G +  A  +  +M  +GF  D  T+  ++  +CKSG ++  VE Y+ 
Sbjct: 366 AIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVE-YFE 424

Query: 183 VCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            CK    A +   Y  LI  + KAG +DEA +    +VE G       Y  +I  + + G
Sbjct: 425 FCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSG 484

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + ++A   F  M+ +G       YT+LI+   +  R  EA      M + G+TP +  F 
Sbjct: 485 KMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFR 544

Query: 302 LVTDGLKNCGKHDLAEKI 319
            ++ GL   GK   A KI
Sbjct: 545 ALSVGLCLSGKVARACKI 562



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 123/300 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  S  T + ++        +++A  VF           V+ YN+++   C+   
Sbjct: 216 MKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGN 275

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A      M ++   PDK TY  L+ A  S G         QEM ++G   P     L
Sbjct: 276 TKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSL 335

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++ GL   G       +   M K+G   ++  + +LI+   K+G V   + ++  +   G
Sbjct: 336 VIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEG 395

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  TY +++  + K+G +DEA        ++        Y+ +I G+ + G+ D+A 
Sbjct: 396 FEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAE 455

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            FF EM  +G P +   Y  LI    + G+  EA      M + G       + ++  GL
Sbjct: 456 KFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGL 515



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 133/312 (42%), Gaps = 3/312 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           + +SP  ++ +++     G  D A   F       N    +  Y SL+  L     F   
Sbjct: 115 IKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRV 174

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +      KGF+        L+ ++ + G + E     + M + G  P +   + L+ G
Sbjct: 175 RCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNG 234

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L+N+ ++ESA+++   M       D+ ++N++I+  CK+G  +  +E +  + K  L  D
Sbjct: 235 LVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPD 294

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI A    G  D    L   + E G +  P  Y+ +I G+ + G+  +    F 
Sbjct: 295 KITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFE 354

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  KG   N  +YT LI   G+ G   EA N    M   G  P    + ++ +GL   G
Sbjct: 355 NMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSG 414

Query: 312 KHDLAEKIELLE 323
           + D  E +E  E
Sbjct: 415 RLD--EAVEYFE 424



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 1/224 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E  K   ++V+    S +I+  GK G VD A + F +     C Q    YN+L+ AL + 
Sbjct: 424 EFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKS 483

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L +RM ++G      TY IL++      +  EA +    M DKG  P     
Sbjct: 484 GKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASF 543

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L  GL  +G +  A ++++++   G V+    F  +I  +CK+G  E   ++   +  
Sbjct: 544 RALSVGLCLSGKVARACKILDELAPMG-VIPETAFEDMINVLCKAGRTEQACKLADGIVD 602

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G         ILI A+ KAG  D A +L+H+ +  G+    S+
Sbjct: 603 RGREVPGRVRTILINALRKAGNADLAMKLMHSKIGIGYDRMGSI 646



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 1/241 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK         T  +I+    K G +D AVE F  C         + Y+SL+  L + 
Sbjct: 389 ERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKA 448

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A      M+ +G   D   Y  L++A   SGKM EA    + M  +G +  V   
Sbjct: 449 GRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTY 508

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+ GL      E A ++ + MI +G      +F +L   +C SG+V    ++   +  
Sbjct: 509 TILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARACKILDELAP 568

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +G+  + + ++ +I  + KAG  ++A +L   +V+ G +    +   +I  + + G  D 
Sbjct: 569 MGVIPE-TAFEDMINVLCKAGRTEQACKLADGIVDRGREVPGRVRTILINALRKAGNADL 627

Query: 246 A 246
           A
Sbjct: 628 A 628


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 132/276 (47%), Gaps = 3/276 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S    S +I+E  K  LV+ A  +  K         V  YN+L+  LC+ + F  A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M  +G  P++ TYAIL++A C  G + +A     +M DKG    V   + L+ G    
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A+ +++ M+K+G      +++ LI  +C++G++  C+E++  + + G+  +  T+
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTF 481

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K   +DEA RL   +++    P    +  +I+G    G    AF  + +M  
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVE 541

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTE 290
            G  P+   Y  LI+ +C   G  V  AN  V   E
Sbjct: 542 MGLKPDNYTYRSLISGLCLTSG--VSKANEFVADLE 575



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 2/309 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++V+  T S I+    K      A ++F+K           +Y + + A CE +   GA 
Sbjct: 159 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 218

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ RM  +G       Y +L+   C + +++EA E    M + G          LV G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                LE A ++ + MI+ GFV      + +I+ + K   VE    +   +  LG+  +V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  + K    D+A RL   +   G +P    YA +I  + +RG  +DA C F +
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG       Y  LI    + G    A   L  M + GLTP +  +  +  GL  C  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL--CRN 456

Query: 313 HDLAEKIEL 321
            DL+  +EL
Sbjct: 457 GDLSSCMEL 465



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 121/278 (43%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  V  AVEV N           + Y +L++  C ++    A  +   MIR GFVP + 
Sbjct: 245 KNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEA 304

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
             + +++       + EA     ++ D G  P V   + L+  L      + A ++  +M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   +  T+  LI  +CK G +E  + ++  +   G+   V  Y  LI    K G +
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 424

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A  LL  +V++G  P  + Y+P+I G+ R G          EM  +G   N   +T L
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTAL 484

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           I    +  +  EAA    +M +  + P    F+++ +G
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 1/222 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L R M  +G  PD   Y  +++A      M +A     +M   G++P      +L+  L 
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            +GYL SA+ +  +M+    + +  T+N  ++     G++E   +++ ++ + G  A + 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIV 758

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           ++ ILI  + KAG I EA  L+  + E G  P    Y+ II  + + G  + AF  ++EM
Sbjct: 759 SFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             KG  P+   Y + I  C   G   +A      M   G+ P
Sbjct: 819 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 860



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 113/265 (42%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L++ LC+      A  +   M+  G   D+ TY  LV  +C   ++  A     +M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P       ++  L     +E A  +  K+   G V ++  +N+LI+ +CK+   +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  +   GL  +  TY ILI A+ K GMI++A  L   + + G K     Y  +I
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  ++G  D A    S M  +G  P    Y+ LI    R G          EM E G+ 
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIA 475

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +  F  + +G     K D A ++
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL 500



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++ AL + +    A     +M+  G+ P+  T+ +L+N  C SG +  A+   +E
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKE 713

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P     +  +      G +E AK + + M+ QG +  + +FN LI+ +CK+G+
Sbjct: 714 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGK 772

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  +++   + + G   D  +Y  +I  + K G I++AF L + ++  G KP    Y  
Sbjct: 773 IQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNI 832

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            I+     G+ D A   ++ M   G  PN   Y  L++
Sbjct: 833 FIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLS 870



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 125/305 (40%), Gaps = 3/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K   +D A  +F+K    N     + +N ++   C V     A+ L  +M
Sbjct: 480 TFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQM 539

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY  L++  C +  + +A EF+ ++ +            L+ G    G  
Sbjct: 540 VEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRF 599

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + ++M  +G  LDL +F  ++    K  + E    ++  + + G+  D   Y  +
Sbjct: 600 TETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCM 659

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+SK   + +A      +V DG+ P    +  +I  + + G    A     EM     
Sbjct: 660 IDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNV 719

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN+  Y   +      G   +A +    M +  L  I   F+++  GL   GK  + E 
Sbjct: 720 LPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIV-SFNILIKGLCKAGK--IQEA 776

Query: 319 IELLE 323
           I+L+ 
Sbjct: 777 IDLMS 781



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 108/227 (47%), Gaps = 11/227 (4%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLL---------YNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++D   +  N   A NC   +++         +  L+  LC+      A  L + M+   
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+K TY   ++ + + G M +A++    M  +G    +   ++L++GL  AG ++ A 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +++K+ + GF  D  +++++I  +CK G++    E++  +   GL  DV  Y I I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           +  G  D+A  +  N++  G +P    Y  ++ G+     +D + CF
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFS-CF 883



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 136/359 (37%), Gaps = 37/359 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + V+    + +I  + K G +D A  + +             Y+ L+  LC    
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 L R M  +G   +  T+  L+N +C   KM EA     +M D    P     ++
Sbjct: 459 LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSV 183
           +++G    G +  A Q+ ++M++ G   D  T+ SLI  +C +  V    EF  ++  S 
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 184 CKL-------------------------------GLCADVSTYKILIPAVSKAGMIDEAF 212
             L                               G+  D+ ++ I++ A  K    +++ 
Sbjct: 579 AVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G KP    Y  +I  + +      A   + +M + G+ PN   +T+LI   
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNL 698

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE--LLEVSLRSV 329
            + G    A     EM    + P    ++   D     G  + A+ +   +L+  L S+
Sbjct: 699 CKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASI 757


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 129/266 (48%), Gaps = 5/266 (1%)

Query: 2   WKTIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           W   ++MK     + P   T + +I+ F K G +  A E++N     +    V  Y SL+
Sbjct: 244 WLLRDMMKR---RIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLI 300

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
             LC   L   A  +   M R G  P++  Y  L++ +C S ++ +  +   EMS KG  
Sbjct: 301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVV 360

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
                  +L+QG    G  + A+++ N+M  +    D+ T+N L++ +C +G+VE  + +
Sbjct: 361 ANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMI 420

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + K  +  ++ TY I+I  + K G +++AF L  +L   G KP    Y  +I G  R
Sbjct: 421 FEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCR 480

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVY 265
           RG   +A   F +MK  G  PN  VY
Sbjct: 481 RGLIHEADSLFKKMKEDGFLPNESVY 506



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 145/312 (46%), Gaps = 35/312 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    K+  +++AVE+FN+      +  V+ YN+L+  LCE+  +  A  L+R M
Sbjct: 190 TYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDM 249

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +++   P+  T+  L++A+   GK+ EA+E    M      P V     L+ GL   G L
Sbjct: 250 MKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+QM   M + G   +   + +LI   CKS  VE  ++++Y + + G+ A+  TY +L
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL 369

Query: 199 IPA---VSKAGMIDEAFRLL-----------HNLVEDG----HKPFPSL----------- 229
           I     V +  +  E F  +           +N++ DG     K   +L           
Sbjct: 370 IQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM 429

Query: 230 ------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
                 Y  II+GM + G+ +DAF  F  +  KG  PN   YT +I+   R G   EA +
Sbjct: 430 DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADS 489

Query: 284 YLVEMTEMGLTP 295
              +M E G  P
Sbjct: 490 LFKKMKEDGFLP 501



 Score =  107 bits (266), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 122/265 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ + SLL   C       A AL  +++  GF P+  TY  L+   C +  +  A E   
Sbjct: 153 LVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFN 212

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G  P V   + LV GL   G    A  ++  M+K+    ++ TF +LI+   K G
Sbjct: 213 QMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVG 272

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    E+Y  + ++ +  DV TY  LI  +   G++DEA ++ + +  +G  P   +Y 
Sbjct: 273 KLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYT 332

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +  + +D    F EM  KG   N   YT+LI      GR   A     +M+  
Sbjct: 333 TLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSR 392

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
              P  R ++++ DGL   GK + A
Sbjct: 393 RAPPDIRTYNVLLDGLCCNGKVEKA 417



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 137/298 (45%), Gaps = 8/298 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  +     +++A+ +F++      +  V+ Y +L+  LC+ +  + A  L  +M
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY  LV   C  G+  +A   L++M  +   P V     L+   +  G L
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++ N MI+     D+ T+ SLI  +C  G ++   +M+Y + + G   +   Y  L
Sbjct: 275 MEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTL 334

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +++  ++ + + + G       Y  +I+G    G+ D A   F++M  +  
Sbjct: 335 IHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRA 394

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVEMT---EMGLTPISRCFDLVTDGLKNCGK 312
           PP+   Y +L+  +C  G   VE A  + E     EM +  ++  + ++  G+   GK
Sbjct: 395 PPDIRTYNVLLDGLCCNGK--VEKALMIFEYMRKREMDINIVT--YTIIIQGMCKLGK 448



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 116/249 (46%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A   + +M++ GF PD  T+  L+N +C   ++ +A     ++   GF P V     L++
Sbjct: 137 ASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIR 196

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L    +L  A ++ N+M   G   ++ T+N+L+  +C+ G       +   + K  +  
Sbjct: 197 CLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEP 256

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V T+  LI A  K G + EA  L + +++    P    Y  +I G+   G  D+A   F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             M+  G  PN  +YT LI    +  R  +      EM++ G+   +  + ++  G    
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376

Query: 311 GKHDLAEKI 319
           G+ D+A+++
Sbjct: 377 GRPDVAQEV 385



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 80/176 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I  F K   V++ +++F + +        + Y  L+   C V     A  +  +M  
Sbjct: 332 TTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSS 391

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +   PD RTY +L++  C +GK+ +A    + M  +  +  +    +++QG+   G +E 
Sbjct: 392 RRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVED 451

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
           A  +   +  +G   ++ T+ ++I   C+ G +     ++  + + G   + S YK
Sbjct: 452 AFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 4/309 (1%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           +  ++  + I   G+ G  + AV +  +         +  Y++++ A  +   +  A   
Sbjct: 31  IDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFF 90

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M  KG  PD R+Y   +NA    G+ + A + L+EM  +   P V   +  +     
Sbjct: 91  LMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAK 150

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           AG  E A  +V +M   G   D+ +++S I    + G  E  +E++  +   G+  DV T
Sbjct: 151 AGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVIT 210

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y   I A +  G   EA  LL  +   G  P    Y+ +I    + GQ+  A     EMK
Sbjct: 211 YGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMK 270

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
                PN   Y   I  C +GGR+ EA + L EM  +GL P    +  V D    C K D
Sbjct: 271 AMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDA---CSKGD 327

Query: 315 -LAEKIELL 322
              E I++L
Sbjct: 328 RWKEAIDIL 336



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 127/290 (43%), Gaps = 2/290 (0%)

Query: 7   LMKPYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           LM+     ++P   S    I    + G    A+++  +  A +    V++YNS + +  +
Sbjct: 91  LMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAK 150

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A +L++ M   G  PD  +Y+  ++A    G+  EA E  ++M   G  P V  
Sbjct: 151 AGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVIT 210

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
               +    N G  + A  ++ K+   G   ++ +++S+I    K G+ +  +++   + 
Sbjct: 211 YGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMK 270

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            + L  ++ TY   I A +K G   EA  LL  +   G  P    Y+ +I    +  ++ 
Sbjct: 271 AMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWK 330

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +A     EM   G  PN   Y   I  C +GG++ EA   L EM   G+T
Sbjct: 331 EAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVT 380



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 134/313 (42%), Gaps = 4/313 (1%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   + ++P  +S   +I    K G    A+++  +  A      ++ YN+ + A  +
Sbjct: 231 LRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAK 290

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEMSDKGFNPPVR 123
              +  A  L+R M   G  PD  +Y+ +++A CS G + +EA + L+EM   G +P   
Sbjct: 291 GGRWKEAIDLLREMPTVGLPPDVVSYSSVIDA-CSKGDRWKEAIDILREMPTVGLSPNAI 349

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             +  +      G  + AK ++ +M   G    +  +NS I    K  + +  + +   +
Sbjct: 350 SYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREM 409

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
             +GL   V +Y   I A  K  +  +A  LL  +   G  P    Y   I    R  Q+
Sbjct: 410 PTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQW 469

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++A     EM   G  P+   Y+  I  C +G ++ EA   L EM+  GL P   C++  
Sbjct: 470 EEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSA 529

Query: 304 TDGLKNCGKHDLA 316
            D     G+  +A
Sbjct: 530 IDACSKGGRWKMA 542



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 134/319 (42%), Gaps = 4/319 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M    L+    + S  I   G+ G  + A+E+F           V+ Y S + A   
Sbjct: 161 VKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACAN 220

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A +L+R++   G  P+  +Y+ ++ A    G+ + A + L+EM      P +  
Sbjct: 221 GGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIIT 280

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +  +      G  + A  ++ +M   G   D+ +++S+I+   K    +  +++   + 
Sbjct: 281 YNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMP 340

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            +GL  +  +Y   I A +K G   EA  LL  +   G       Y   I    +  Q+ 
Sbjct: 341 TVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWK 400

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EM   G       Y+  I  CG+G  +++A   L EM  +GL P   C++   
Sbjct: 401 EALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAI 460

Query: 305 DGLKNCGKHD-LAEKIELL 322
           D    CG+ D   E ++LL
Sbjct: 461 DA---CGRGDQWEEAVDLL 476



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 126/316 (39%), Gaps = 2/316 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+ +  T +  I+   K G    A+++  +         V+ Y+S++ A  +   
Sbjct: 269 MKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDR 328

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  ++R M   G  P+  +Y   ++A    G+ +EA+  L+EM   G    V G + 
Sbjct: 329 WKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNS 388

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +         + A  ++ +M   G    + +++S I+   K        E+   +  +G
Sbjct: 389 AIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVG 448

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +   Y   I A  +    +EA  LL  +   G  P    Y+  I    +  Q+ +A 
Sbjct: 449 LAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEAL 508

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G  P+   Y   I  C +GGR+  A   L EM   GLTP    +    D  
Sbjct: 509 AVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDAC 568

Query: 308 KNCGKHDLAEKIELLE 323
              G+    E I LLE
Sbjct: 569 VRGGQWK--EGIALLE 582



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 115/292 (39%), Gaps = 3/292 (1%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I    K G  + AV +  +         V+ Y+S + A      +  A  L   M   G 
Sbjct: 145 INSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGV 204

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            PD  TY   + A  + G+ +EA   L+++   G  P V     ++      G  + A  
Sbjct: 205 APDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALD 264

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           ++ +M       ++ T+N+ I+   K G  +  +++   +  +GL  DV +Y  +I A S
Sbjct: 265 LLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACS 324

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K     EA  +L  +   G  P    Y   I    + GQ+ +A     EM   G      
Sbjct: 325 KGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVI 384

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            Y   I  C +G ++ EA   L EM  +GL      +    D    CGK +L
Sbjct: 385 GYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDA---CGKGNL 433



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 97/214 (45%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G++ D+++Y + + A    G+  +A   L+EM  +G  P +     ++      G  + A
Sbjct: 28  GWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMA 87

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
              + +M  +G   D  ++ + I    + G  +  +++   +    +  +V  Y   I +
Sbjct: 88  VFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINS 147

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            +KAG  + A  L+  +   G  P    Y+  I    R G++++A   F +M+  G  P+
Sbjct: 148 CAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPD 207

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              Y   I  C  GGR+ EA + L ++  +GLTP
Sbjct: 208 VITYGSAIAACANGGRWKEAVSLLRKIPTVGLTP 241



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 60/130 (46%)

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G   D  +Y + I A  + G  ++A RLL  +  +G  P  S Y+ +I    + GQ+  A
Sbjct: 28  GWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMA 87

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             F  EM  KG  P+   Y   I  C RGGR+  A + L EM    +TP    ++   + 
Sbjct: 88  VFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINS 147

Query: 307 LKNCGKHDLA 316
               G+ ++A
Sbjct: 148 CAKAGQWEIA 157



 Score = 42.0 bits (97), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 239 RRGQFDDAFCFFSEMK-IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           R G +  A      MK + G   ++  Y M IT CGRGG++ +A   L EM   G  P  
Sbjct: 9   RSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 68

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  V D     G+  +A
Sbjct: 69  SAYSAVIDACAKGGQWKMA 87


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 144/310 (46%), Gaps = 5/310 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +P    ++I  F + GLVD A+ V+ K  AF   Q     N+LL  L +   F   + L 
Sbjct: 118 NPSVFGVLIIAFSEVGLVDEALRVYLKVGAFPAVQAC---NALLNGLLKKSSFDIMWELY 174

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+ +   P   TY +LV+A C  G +  A+  + EM  KG  P V     L+ GL + 
Sbjct: 175 NNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSE 234

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L  A+ M  +M   G   +L T+N L++  CK+  V+  + +Y  +   GL  +V T+
Sbjct: 235 SKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTF 294

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A+ K   +  A R    + + G  P   ++  +I G  + G   +A     EM+ 
Sbjct: 295 GILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEK 354

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
               P+   Y++LI    R G   EA + L  M + G+   S  ++ + DG   C + ++
Sbjct: 355 FKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGY--CKEGNM 412

Query: 316 AEKIELLEVS 325
            + +E+ + +
Sbjct: 413 EKALEIFKAT 422



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 142/317 (44%), Gaps = 6/317 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+    M    L  +  T +++++   + G V  A  + ++      +  V++Y +L+ 
Sbjct: 170 MWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIH 229

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC       A ++ R+M   G  P+  TY +L++ +C +  +++A    Q M D G  P
Sbjct: 230 GLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQP 289

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V    +L+  L     L +A++   +M K G V ++  FNSLI+   K+G      ++ 
Sbjct: 290 NVVTFGILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLL 349

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K  +  DV TY ILI    + G ++EA  +L  + ++G      +Y  +I G  + 
Sbjct: 350 LEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKE 409

Query: 241 GQFDDAF------CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           G  + A        FFS+M+  G  P+   Y +++          +      +M +MG+ 
Sbjct: 410 GNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIV 469

Query: 295 PISRCFDLVTDGLKNCG 311
           P      +V  G ++ G
Sbjct: 470 PNEVTSQVVRRGYQDNG 486



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE--- 64
           M+ + +S    T S++I+   + G V+ A ++  +          ++YNSL+   C+   
Sbjct: 352 MEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGN 411

Query: 65  ----VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
               +++F  A      M R G  PD   YA+++    ++  M +      +M   G  P
Sbjct: 412 MEKALEIFK-ATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVP 470

Query: 121 PVRGRDLLVQGLLNAGYLESA 141
                 ++ +G  + GYL+SA
Sbjct: 471 NEVTSQVVRRGYQDNGYLKSA 491


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 139/322 (43%), Gaps = 35/322 (10%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           ++  I+E  K G  + A E++ +         V   N+L+  LC+      A  +++ M+
Sbjct: 425 MTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMV 484

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G   D+ TY I++   C + KM EA +   +M  +GF P +   ++ +    N G +E
Sbjct: 485 NSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVE 544

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
               ++++M  +G   D+ T+ ++I+  CK+ ++    E    + K GL  +   Y  LI
Sbjct: 545 EILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALI 604

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP--------------------------- 232
               + G I +A  +L  +  +G +P P  Y                             
Sbjct: 605 GGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIE 664

Query: 233 --------IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
                   II+G  + G+ D+A  +F EM  +G PPN+  YT L+    + G   EA+  
Sbjct: 665 LGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKL 724

Query: 285 LVEMTEMGLTPISRCFDLVTDG 306
             EM  +G+ P S  ++ +  G
Sbjct: 725 FDEMVSLGIVPDSVSYNTLISG 746



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 18/265 (6%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSS---------------GKMREAQEFLQEMSD 115
           A  L+ R++R  F P     A + ++ C++               G +  A +   E+S 
Sbjct: 111 ARRLVSRLLR--FNPLSVAAAAIADSHCTATADLLVRACLNSPAPGSLSRAADAFLELSA 168

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVE 174
           +G +P ++   +LV+ L   G L+ A+++  +M     V  D+ T+ ++I+ +C++GE++
Sbjct: 169 RGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEID 228

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               M   + + G+   V TY +L+ A+ K+G ++EAFRL   +VE   +P    +  +I
Sbjct: 229 AAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILI 288

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R  QF +      EM+  G  PN  +Y  +I    R G   EA     EM   G+ 
Sbjct: 289 SGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIK 348

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
                ++L+   L   G+ + AEKI
Sbjct: 349 QTVVTYNLIAKALCKEGEMEHAEKI 373



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 1/284 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T +LI +   K G +++A ++ ++   A     C L  + + + L           LIR 
Sbjct: 353 TYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIRE 412

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +   P+       +   C SGK  EA E   ++  KG    V   + L+ GL     
Sbjct: 413 MLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNN 472

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A +++  M+  G  LD  T+N +I+  CK+ +++  +++   + K G   D+ T+ I
Sbjct: 473 MKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNI 532

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +      G ++E   LL  +  +G KP    Y  II G  +      A  + +E+   G
Sbjct: 533 FLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNG 592

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             PN  +Y  LI   GR G   +A   L  M   G+ P    ++
Sbjct: 593 LRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYN 636



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 138/317 (43%), Gaps = 4/317 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           S S +T S+++E  G  G +D A +VF +          V  Y +++ ALC       A+
Sbjct: 172 SPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAF 231

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           A++  + R G  P   TY +L++A C SG++ EA      M +    P +    +L+ GL
Sbjct: 232 AMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGL 291

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                      ++ +M   G   +   +N +I   C+ G     ++++  +   G+   V
Sbjct: 292 ARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTV 351

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR-RGQFDDAFCFFS 251
            TY ++  A+ K G ++ A ++L  ++  G     SL+  ++    R  G+ D       
Sbjct: 352 VTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIR 411

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  +   PN  + T  I    + G+  EAA    ++   GL       + +  GL  C 
Sbjct: 412 EMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGL--CQ 469

Query: 312 KHDLAEKIELLEVSLRS 328
            +++ E  ++L+  + S
Sbjct: 470 GNNMKEATKVLKAMVNS 486



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 141/340 (41%), Gaps = 38/340 (11%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G V+ A  +  +      +  ++ +  L+  L   + F    A+++ M
Sbjct: 248 TYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEM 307

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P++  Y  ++   C  G   EA +   EM  KG    V   +L+ + L   G +
Sbjct: 308 QGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEM 367

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSL----------------------------------- 163
           E A++++++M+  G ++    FNS+                                   
Sbjct: 368 EHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTA 427

Query: 164 -IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            I+ +CKSG+ E   E+++ V   GL  +V+T   LI  + +   + EA ++L  +V  G
Sbjct: 428 CIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSG 487

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            +     Y  +I+G  +  + D+A     +M  +G  P+   + + +      G+  E  
Sbjct: 488 VELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEIL 547

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
           + L +M   GL P    +  + DG   C   D+ +  E L
Sbjct: 548 HLLDQMKSEGLKPDIVTYGTIIDGY--CKAKDMHKANEYL 585



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 100/226 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ +  +   G V+  + + ++  +   +  ++ Y +++   C+ K  H A   +  +
Sbjct: 529 TFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTEL 588

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+   Y  L+  +  +G + +A   L  M   G  P     + L+  + +AG +
Sbjct: 589 MKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLV 648

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  K +  + I +   L +  +  +I+  CK G+++  V  +  +   G+  +  TY  L
Sbjct: 649 EEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTL 708

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + A SK+G  +EA +L   +V  G  P    Y  +I G       D
Sbjct: 709 MFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLD 754



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 1/198 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ELMK   L  +    + +I  +G++G + +A+ + +       Q   + YNSL++ +C  
Sbjct: 587 ELMK-NGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLMYWMCHA 645

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            L     A+  + I K        Y I++  +C  GK+ EA  + +EM  +G  P     
Sbjct: 646 GLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTY 705

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+     +G  E A ++ ++M+  G V D  ++N+LI   C+   ++  VE    +  
Sbjct: 706 TTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSS 765

Query: 186 LGLCADVSTYKILIPAVS 203
             L  D  +Y   +  ++
Sbjct: 766 QVLKQDGCSYNAFVDGIT 783



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK   +  +P T + ++      GLV+    VF +C   + +  V+ Y  ++   C+
Sbjct: 620 LDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCK 679

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A    + M  +G  P+K TY  L+ A+  SG   EA +   EM   G  P    
Sbjct: 680 IGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVS 739

Query: 125 RDLLVQGLLNAGYL----ESAKQMVNKMIKQGFVLDLETFNSLIETI 167
            + L+ G      L    ES  +M ++++KQ    D  ++N+ ++ I
Sbjct: 740 YNTLISGFCEVDSLDKMVESPAEMSSQVLKQ----DGCSYNAFVDGI 782


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG----AYAL 74
           T   +I+  GK G VD A  +F K          ++Y SL+         HG     + +
Sbjct: 194 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF----FIHGRKEDGHKI 249

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            + +IR+G  PD       ++    +G++ + +   +++   GF P VR   +L+ GL  
Sbjct: 250 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 309

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           AG       + + M +QGF LD   +N++++  CKSG+V    E+   + +  +   V+T
Sbjct: 310 AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVAT 369

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  ++  ++K   +DEA+ L       G +    LY+ +I G  + G+ D+A+    EM 
Sbjct: 370 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 429

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            KG  PN   +  L+    +     EA      M EM   P +  + ++ +GL    K++
Sbjct: 430 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 489

Query: 315 LA 316
            A
Sbjct: 490 KA 491



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 140/299 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+    +F    ++     V  Y+ L+  L +         +   M ++GF  D R
Sbjct: 274 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 333

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  +V+ +C SGK+ +A E L+EM +K   P V     +V GL     L+ A  +  + 
Sbjct: 334 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 393

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G  L++  ++SLI+   K G ++    +   + K GL  +V T+  L+ A+ KA  I
Sbjct: 394 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 453

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA     ++ E    P    Y+ +I G+ R  +++ AF F+ +M+ +G  PN   YT +
Sbjct: 454 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTM 513

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           I+   + G   +A +        G  P +  F+ + +G+ N  +   A +   L+ ++R
Sbjct: 514 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQAGWLDTTMR 572



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 146/306 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+  +L  +  T++++++   K   ++ A ++F   +   C    + Y SL+  
Sbjct: 142 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 201

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      AY L  +M+  G   +   Y  L+  +   G+  +  +  +E+  +G  P 
Sbjct: 202 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 261

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   +  +  +  AG +E  + +   +   GF+ D+ +++ LI  + K+G+      +++
Sbjct: 262 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 321

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ + G   D   Y  ++    K+G + +A+ +L  + E   +P  + Y  I+ G+ +  
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 381

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A+  F E K KG   N  +Y+ LI   G+ GR  EA   L EM + GLTP    ++
Sbjct: 382 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 441

Query: 302 LVTDGL 307
            + D L
Sbjct: 442 SLLDAL 447



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 5/313 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L     + + +I    K G +  A E+F +  A     C   YN+++  
Sbjct: 3   WKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 62

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ--EMSDKGFN 119
                 F  AY L+ R+  +G +P   ++  ++      GK R+  E L   E+  K   
Sbjct: 63  YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL---GKKRKVDEALSLFEVMKKDAE 119

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++++  L   G +E A +++++M       +L T N +++ +CK+ ++E   ++
Sbjct: 120 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 179

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           + S  + G   D  TY  LI  + K G +DEA+RL   +++ GH   P +Y  +I+  F 
Sbjct: 180 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 239

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ +D    F E+  +G  P+  +    +    + G   +      ++   G  P  R 
Sbjct: 240 HGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS 299

Query: 300 FDLVTDGLKNCGK 312
           + ++  GL   G+
Sbjct: 300 YSILIHGLTKAGQ 312



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  +G  G  ++A ++  +     C   V+ +NS+L  L + +    A +L   M +K 
Sbjct: 59  MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKD 117

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY I+++  C  G++ EA   L EM      P +   +++V  L  A  LE A 
Sbjct: 118 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 177

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++     ++G   D  T+ SLI+ + K G+V+    ++  +   G  A+   Y  LI   
Sbjct: 178 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 237

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G  ++  ++   L+  G KP  +L    +  +F+ G+ +     F +++  G  P+ 
Sbjct: 238 FIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 297

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEKIE 320
             Y++LI    + G+  E +N    M + G    +R ++ V DG    GK H   E +E
Sbjct: 298 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 356



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 36/260 (13%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+     +  +G  PD  +Y  ++   C +G++ EA+E   +M  +   P     + ++ 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G  +AG  E A +++ ++ ++G +  + +FNS++  + K  +V+  + + + V K     
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSL-FEVMKKDAEP 120

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNL------------------------VEDGHKPF 226
           + STY I+I  +   G ++EA+R+L  +                        +E+ +K F
Sbjct: 121 NSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIF 180

Query: 227 PS-----------LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            S            Y  +I G+ ++GQ D+A+  F +M   GH  N  VYT LI      
Sbjct: 181 ESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH 240

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           GR  +      E+   G  P
Sbjct: 241 GRKEDGHKIFKELIRRGCKP 260



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 35/274 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    ++  +  + +++ F K G V  A E+  +      Q  V  Y +++  L ++  
Sbjct: 323 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 382

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L      KG   +   Y+ L++ +   G++ EA   L+EM  KG  P V     
Sbjct: 383 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY---- 438

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
                                          T+NSL++ + K+ E+   +  + S+ ++ 
Sbjct: 439 -------------------------------TWNSLLDALVKAEEINEALVCFQSMKEMK 467

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +  TY ILI  + +    ++AF    ++ + G  P    Y  +I G+ + G   DA+
Sbjct: 468 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAY 527

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
             F   K  G  P+   +  LI       R +EA
Sbjct: 528 SLFERFKANGGIPDAASFNALIEGMSNANRAMEA 561



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 95/212 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK   +  +  T   I++   K   +D A  +F +  +   +  V+LY+SL+  
Sbjct: 352 YEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDG 411

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++A   + ++ EA    Q M +    P 
Sbjct: 412 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPN 471

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A      M KQG V ++ T+ ++I  + K G +     ++ 
Sbjct: 472 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFE 531

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                G   D +++  LI  +S A    EA++
Sbjct: 532 RFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 133/270 (49%), Gaps = 2/270 (0%)

Query: 2    WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            W+ I+LMK  N+ +  +T ++++  + K GL   AV  FN+   + C+   + ++ ++ +
Sbjct: 1198 WQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISS 1257

Query: 62   LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            L + +    A +    + +  F PD   Y  LV+ WC +G + EA+    EM   G  P 
Sbjct: 1258 LSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPN 1316

Query: 122  VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            V    +++  L  +G +  A  + ++MI  G   +  TFN+L+    K+G  E  +++Y 
Sbjct: 1317 VYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYN 1376

Query: 182  SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             + +LG   D  TY  LI +  +   ++EA ++L N V+ G     S + PI   + + G
Sbjct: 1377 QMKRLGCPPDAITYNFLIESHCRDDNLEEAVKIL-NSVKKGCNLNASSFNPIFGCISKLG 1435

Query: 242  QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
              + A   F++MK     PN   Y +L+ M
Sbjct: 1436 DVNSAHRMFAKMKDLKCRPNTVTYNILMRM 1465



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 120/302 (39%), Gaps = 11/302 (3%)

Query: 14   SVSPQTLSLIIEEFG--KHGL-VDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFH 69
            SVS   +  +IE+ G  +HG+     +  FN  T           Y  ++    +V+ F 
Sbjct: 1136 SVSSAIVRRVIEKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFD 1195

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             A+ LI  M  +       T+ ILV  +  +G   EA      M D G  P      +++
Sbjct: 1196 LAWQLIDLMKTRNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVI 1255

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
              L        A+   + + K  F  D+  + SL+   C++G +     ++  +   G+ 
Sbjct: 1256 SSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIX 1314

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             +V TY I+I A+ ++G I  A  +   +++ G  P    +  +++   + G+ +     
Sbjct: 1315 PNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 1374

Query: 250  FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL------VEMTEMGLTPISRCFDLV 303
            +++MK  G PP+   Y  LI    R     EA   L        +      PI  C   +
Sbjct: 1375 YNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKL 1434

Query: 304  TD 305
             D
Sbjct: 1435 GD 1436



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 1/128 (0%)

Query: 28   GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
             K G V++A  +F K     C+   + YN L+    + K       L + M      P+ 
Sbjct: 1432 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 1491

Query: 88   RTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             TY +L++ +C  G    A  F +EM  +K   P +   ++++Q L  AG L+  +++V 
Sbjct: 1492 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 1551

Query: 147  KMIKQGFV 154
            KM+ +GFV
Sbjct: 1552 KMVNRGFV 1559



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            V T+ IL+    KAG+  EA    + + + G KP    ++ +I  + ++ +  +A  FF 
Sbjct: 1213 VETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFD 1272

Query: 252  EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             +K +   P+  VYT L+    R G   EA     EM   G+ P    + +V D L   G
Sbjct: 1273 SLKDR-FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSG 1331

Query: 312  KHDLAEKI--ELLEV 324
            +   A  +  E+++V
Sbjct: 1332 QITRAHDVFSEMIDV 1346


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 126 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 185

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM  A     EM  KG  P       L+ G    G ++
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 246 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 306 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM++    + G   + +  L EM   G  P    ++++ +G
Sbjct: 366 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 121/265 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 147 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 206

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               GA  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 207 SKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 266

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 267 NTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ 326

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  I+    ++G    
Sbjct: 327 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWK 386

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLIT 270
                 EM+  GH P+   Y +L+ 
Sbjct: 387 GSKLLKEMQRDGHAPSVVTYNVLMN 411



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 56  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 115

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 116 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 175

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++    ++  +   GL  +  T+  LI
Sbjct: 176 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 235

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 295

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 296 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 355

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 356 LREMLSVGLK 365



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D A  +F++          + + +L+   C+      A  + ++M
Sbjct: 195 TYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 255 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 315 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 375 VNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 121/255 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  Y++L+  LC+      A  L   M   G VP+  T+  L++  C  GK+  A    +
Sbjct: 296 VFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFE 355

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M D+G  P +   + L+ GL   G L+ A++++N+MI  GF  D  TF +L++  CK G
Sbjct: 356 IMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDG 415

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++  +E+   + + G+  D   +  LI  + + G + +A R+L +++  GHKP    Y 
Sbjct: 416 DMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYT 475

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    ++G          EM+  G  P    Y  L+    + G+   A   L  M  M
Sbjct: 476 MVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNM 535

Query: 292 GLTPISRCFDLVTDG 306
            + P    F+++ DG
Sbjct: 536 EVVPNDITFNILLDG 550



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 131/293 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G V NA  VF++ +    +  V+ +N+L+   C  K     + L   M 
Sbjct: 229 FNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVME 288

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            +   PD  TY+ L+N  C   ++ EA     EM + G  P       L+ G    G ++
Sbjct: 289 SERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKID 348

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +    M  +G   DL T+N+LI  +C+ G+++   ++   +   G   D  T+  L+
Sbjct: 349 LALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLM 408

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   +VE+G +     +  +I G+ R G+  DA     +M   GH 
Sbjct: 409 DGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHK 468

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           P+ P YTM+I    + G     A  L EM   G  P    ++ + +G    G+
Sbjct: 469 PDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQ 521



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V L+N L+   C++     A  +   + R+G  P   ++  L++ +C S  + E      
Sbjct: 226 VYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKS 285

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +  +P V     L+ GL     +E A  + ++M + G V +  TF +LI+  CK G
Sbjct: 286 VMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHG 345

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++  +  +  +   G+  D+ TY  LI  + + G + EA +LL+ ++ +G KP    + 
Sbjct: 346 KIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFT 405

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G  + G  D A      M  +G   +   +T LI+   R GR  +A   L +M   
Sbjct: 406 TLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSA 465

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G  P    + +V D    C K D+    +LL+
Sbjct: 466 GHKPDDPTYTMVIDCF--CKKGDVKMGAKLLK 495



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 108/238 (45%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G+ P+   + IL++ +C  G +  A+    E+S +G  P V   + L+ G   +  +E  
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             + + M  +    D+ T+++LI  +CK   VE    ++  +C++GL  +  T+  LI  
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDG 340

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K G ID A R    + + G +P    Y  +I G+ R G   +A    +EM   G  P+
Sbjct: 341 QCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPD 400

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +  +T L+  C + G    A      M E G+      F  +  GL   G+   AE++
Sbjct: 401 KITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERM 458



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 3/252 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   KHG +D A+  F        +  ++ YN+L+  LC       A  L+  M
Sbjct: 333 TFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEM 392

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  GF PDK T+  L++  C  G M  A E    M ++G          L+ GL   G +
Sbjct: 393 IGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRV 452

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++M+  M+  G   D  T+  +I+  CK G+V+   ++   + + G    V TY  L
Sbjct: 453 RDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNAL 512

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +  A  LLH ++     P    +  ++ G  + G   D   F  E   KG 
Sbjct: 513 MNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGE---KGL 569

Query: 259 PPNRPVYTMLIT 270
             +   YT L+ 
Sbjct: 570 VSDYASYTALVN 581



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 3/235 (1%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES-AKQMVNKM 148
           +  L+ A+  S  + +A + L+ +    F+ PV G D L++ ++          +   ++
Sbjct: 158 FDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCWEFYLEV 217

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           +  G+  ++  FN L+   CK G+V     ++  + + GL   V ++  LI    ++  +
Sbjct: 218 LDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNV 277

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +E F L   +  +   P    Y+ +I G+ +  + ++A   F EM   G  PN   +T L
Sbjct: 278 EEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTL 337

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           I    + G+   A      M + G+ P    ++ + +GL  C   DL E  +LL 
Sbjct: 338 IDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGL--CRDGDLKEARKLLN 390


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  117 bits (292), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 160/355 (45%), Gaps = 42/355 (11%)

Query: 5   IELMKPYNL---SVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           I+LM+  NL   S+ P  +  ++II+   K+ LV  A  ++++  A      V+ Y +L+
Sbjct: 194 IQLMR--NLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLI 251

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL--------- 110
           +  C +     A AL+  M  K   PD  T++IL++A    GKM+ A+  L         
Sbjct: 252 YGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVK 311

Query: 111 --------------------------QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
                                       M+  G  P V+   +++ GL     ++ A  +
Sbjct: 312 PDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISL 371

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M  +  + +  TFNSLI+ +CKSG + +  ++   +      ADV TY  LI A+ K
Sbjct: 372 FEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCK 431

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              +D+A  L   ++    +P    Y  +I G+ + G+   A   F  + IKG+  +   
Sbjct: 432 NCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRT 491

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           YT++I+   + G F EA   L +M + G  P +  FD++   L    ++D AEK+
Sbjct: 492 YTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKL 546



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 137/291 (47%), Gaps = 2/291 (0%)

Query: 25  EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
             +  H   ++AV +FN+            +N++L +L +++ F  A +L + +  KG  
Sbjct: 42  SHYNNHNDHNDAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGIT 101

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D  T  IL+N +C  G++  +   L  +  +G++P V     L++GL   G ++ A + 
Sbjct: 102 SDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKF 161

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
            + ++   F LD  ++ +LI  +CK GE +  +++  ++ +  +  DV  Y I+I ++ K
Sbjct: 162 HDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCK 221

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
             ++ EA  L   +      P    Y  +I G    G   +A    +EMK+K   P+   
Sbjct: 222 NKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYT 281

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCGKH 313
           +++LI   G+ G+   A   L  M +  + P    ++ + DG  L N  KH
Sbjct: 282 FSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKH 332



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 134/297 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I    K G    A+++       + +  V++YN ++ +LC+ KL   A  L   M  K 
Sbjct: 180 LINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQ 239

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+  +C  G + EA   L EM  K  NP V    +L+  L   G +++AK
Sbjct: 240 IYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAK 299

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++  M+K     D+ T+NSL++      EV+    ++ S+ + G+   V +Y I+I  +
Sbjct: 300 IVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGL 359

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K  M+DEA  L   +      P    +  +I G+ + G+    +    +M+ +    + 
Sbjct: 360 CKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADV 419

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y+ LI    +     +A     +M    + P    + ++ DGL   G+  +A+++
Sbjct: 420 ITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEV 476



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 104/225 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           V +A  VFN          V  Y  ++  LC+ K+   A +L   M  K  +P+  T+  
Sbjct: 330 VKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNS 389

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C SG++    + + +M D+     V     L+  L    +L+ A  +  KMI Q 
Sbjct: 390 LIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQE 449

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+  LI+ +CK G ++   E++  +   G   D+ TY ++I    KAG+ DEA 
Sbjct: 450 IQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEAL 509

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LL  + ++G  P    +  II  +F + + D A     EM  +G
Sbjct: 510 ALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARG 554



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 127/293 (43%), Gaps = 1/293 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+ +I+     G V  A++  +   A   Q   + Y +L+  LC++     A  L+R +
Sbjct: 141 TLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNL 200

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD   Y I++++ C +  + EA     EM+ K   P V     L+ G    G L
Sbjct: 201 EERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCL 260

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++N+M  +    D+ TF+ LI+ + K G+++    +   + K  +  DV TY  L
Sbjct: 261 IEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSL 320

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +        +  A  + +++ + G  P    Y  +I G+ +    D+A   F EMK K  
Sbjct: 321 VDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNV 380

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNC 310
            PN   +  LI    + GR     + + +M +         +  + D L KNC
Sbjct: 381 IPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNC 433



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 74/154 (48%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  ++ M+  +      T S +I+   K+  +D A+ +F K      Q  +  Y  L+ 
Sbjct: 403 VWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILID 462

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A  + + ++ KG+  D RTY ++++ +C +G   EA   L +M D G  P
Sbjct: 463 GLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIP 522

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                D+++  L      + A++++ +MI +G +
Sbjct: 523 NAITFDIIICALFEKDENDKAEKLLREMIARGLL 556


>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g65820-like [Glycine max]
          Length = 628

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 145/312 (46%), Gaps = 2/312 (0%)

Query: 1   MWKTIELMKPYNLS-VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  IE M+  N   ++PQ   +++  F    +V  AV+V ++   + C+    ++  LL
Sbjct: 149 VWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLL 208

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            AL +      A +L   + R  + P  + +  L+  WC  GK+ EA+  L +M D G  
Sbjct: 209 DALRKNGSVKEAASLFEEL-RYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIE 267

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   A  +  A  ++ +M ++G   +  ++  LI+++CK   +E    +
Sbjct: 268 PDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRV 327

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + + G  AD+ TY  LI    K G I   + LL  +++ GH P   +Y  I+    +
Sbjct: 328 FVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEK 387

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           + + ++     +EM+  G  P+  +Y  +I +  + G   E      EM   GL+P    
Sbjct: 388 KEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDT 447

Query: 300 FDLVTDGLKNCG 311
           F ++ +G    G
Sbjct: 448 FVIMINGFLEQG 459



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 136/350 (38%), Gaps = 44/350 (12%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           Y    S +  + ++  + K G +  A  V  +      +  +++YN+LL    +      
Sbjct: 229 YRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGD 288

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           AY L++ M RKG  P+  +Y +L+ + C   ++ EA     EM   G    +     L+ 
Sbjct: 289 AYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLIS 348

Query: 131 GLLNAGYLESAKQMVNKMIKQGF-----------------------------------VL 155
           G    G ++   +++++MI+QG                                      
Sbjct: 349 GFCKWGKIKRGYELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAP 408

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           DL  +N++I   CK GEV+  V ++  +   GL   + T+ I+I    + G + EA    
Sbjct: 409 DLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYF 468

Query: 216 HNLVEDG--HKPFPSLYAPIIKGMFRRGQFD---DAF-CFFSEMKIKGHPPNRPVYTMLI 269
             +V  G    P       ++  + R  + +   DA+ C  +    KG   N   +T+ I
Sbjct: 469 KEMVGRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCITAS---KGCQLNVSAWTIWI 525

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
                 G   EA ++ + M +  L P    F  +  GLK     + A +I
Sbjct: 526 HALFSKGHVKEACSFCIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAAEI 575



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 81/186 (43%), Gaps = 1/186 (0%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L++   +A  +  A Q++++M   G   D   F  L++ + K+G V+    ++  + + 
Sbjct: 171 ILMRRFASARMVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEEL-RY 229

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
                V  +  L+    K G + EA  +L  + + G +P   +Y  ++ G  +  +  DA
Sbjct: 230 RWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDA 289

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +    EM+ KG  PN   YT+LI    +  R  EA    VEM   G       +  +  G
Sbjct: 290 YDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISG 349

Query: 307 LKNCGK 312
               GK
Sbjct: 350 FCKWGK 355


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 147/344 (42%), Gaps = 37/344 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M    L  +    S++I  +   G ++ A  + +  +       +  YN+++  L
Sbjct: 459 KLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCL 518

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-- 120
            +      A   +  +  +G  PD  T+   +  +  +GKM EA ++  EM D G  P  
Sbjct: 519 SKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNN 578

Query: 121 ---------------------------------PVRGRDLLVQGLLNAGYLESAKQMVNK 147
                                             V+     + GLL  G ++ A ++ ++
Sbjct: 579 PLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSE 638

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           + ++G V D+ T++SLI   CK GEVE   E++  +C  G+  ++  Y  L+  + K+G 
Sbjct: 639 LKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGD 698

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           I  A +L   + E G +P    Y+ +I G  +     +AF  F EM  KG  P+  VY  
Sbjct: 699 IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNA 758

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNC 310
           L+  C + G   +A N   EM + G    +  F+ + DG  K+C
Sbjct: 759 LVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCKSC 801



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 139/336 (41%), Gaps = 36/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G V+ A E+ ++         + +YN+L+  LC+      A  L   M
Sbjct: 650 TYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGM 709

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ +++ +C S  + EA     EM  KG  P     + LV G    G +
Sbjct: 710 PEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 769

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV--------------- 183
           E A  +  +M+++GF   L +FN+LI+  CKS +++   +++  +               
Sbjct: 770 EKAMNLFREMLQKGFATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTV 828

Query: 184 ----CKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
               CK G                L  D  TY  L+   +K G   E F L   +V  G 
Sbjct: 829 IDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGV 888

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           KP    Y  +I    +     +AF    E+  KG      ++ +LIT   +     EA+ 
Sbjct: 889 KPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASK 948

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            L EM E+GL P     + +       GK D A ++
Sbjct: 949 LLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRV 984



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 136/307 (44%), Gaps = 1/307 (0%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T E M+   L       S +I+ F + G +D  + + +   +      ++ YN L+  LC
Sbjct: 320 TFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLC 379

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  +++ M+  G  P+ RT+ +L+  +C    M  A E L EM  +   P   
Sbjct: 380 KFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 439

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               ++ GL +   L  A +++ KM   G   ++  ++ LI      G +E    +   +
Sbjct: 440 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM 499

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  D+  Y  +I  +SKAG ++EA   L  +   G KP    +   I G  + G+ 
Sbjct: 500 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKM 559

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDL 302
            +A  +F EM   G  PN P+YT+LI    + G  +EA +    +  +G+ P +  C   
Sbjct: 560 TEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAF 619

Query: 303 VTDGLKN 309
           +   LKN
Sbjct: 620 IHGLLKN 626



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 137/328 (41%), Gaps = 1/328 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    M    +     T + ++    K G +  A  V  +           +Y+ ++  
Sbjct: 213 WKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEG 272

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           +C+V     A  L R M  KG VP+  TY I+    C + +M EA+   +EM   G  P 
Sbjct: 273 MCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G +  G ++   ++ + M+  G  ++L T+N LI  +CK G++E   E+  
Sbjct: 333 YNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK 392

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +  LG   +  T+ +LI    +   +  A  LL  + +    P    Y  +I G+    
Sbjct: 393 GMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCK 452

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
               A     +M   G  PN  VY++LI      GR  EA   L  M+  G+ P   C++
Sbjct: 453 DLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYN 512

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            +   L   GK + A    LLE+  R +
Sbjct: 513 AIISCLSKAGKMEEASTY-LLEIQGRGL 539



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 146/322 (45%), Gaps = 3/322 (0%)

Query: 1   MWKTIELMKP-YNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           M K  E++K    L   P  +T  L+IE + +   +  A+E+ ++    N     + Y +
Sbjct: 384 MEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 443

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LC  K    A  L+ +M   G  P+   Y+IL+ A+ S G++ EA+  L  MS  G
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSG 503

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + ++  L  AG +E A   + ++  +G   D  TF + I    K+G++    
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAA 563

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           + +  +   GL  +   Y +LI    KAG + EA  +   L   G  P     +  I G+
Sbjct: 564 KYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGL 623

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            + G+  +A   FSE+K KG  P+   Y+ LI+   + G   +A     EM   G+ P  
Sbjct: 624 LKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNI 683

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++ + DGL   G    A K+
Sbjct: 684 FIYNALVDGLCKSGDIQRARKL 705



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 134/298 (44%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T    I  + K G +  A + F++           LY  L+    +      A ++ RR+
Sbjct: 545 TFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRL 604

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G +PD +T +  ++    +G+++EA +   E+ +KG  P V     L+ G    G +
Sbjct: 605 HALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 664

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A ++ ++M  +G   ++  +N+L++ +CKSG+++   +++  + + GL  D  TY  +
Sbjct: 665 EKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 724

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  + EAF L H +   G +P   +Y  ++ G  + G  + A   F EM  KG 
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 784

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
                  T++   C +  +  EA+    EM    + P    +  V D     GK + A
Sbjct: 785 ATTLSFNTLIDGYC-KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEA 841



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 129/303 (42%), Gaps = 2/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G ++ A E+        C+     +  L+   C       A  L+  M
Sbjct: 370 TYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 429

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++  VP   +Y  ++N  C    +  A + L++M+  G  P V    +L+    + G +
Sbjct: 430 EKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRI 489

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A+++++ M   G   D+  +N++I  + K+G++E        +   GL  D  T+   
Sbjct: 490 EEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAF 549

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   SK G + EA +    +++ G  P   LY  +I G F+ G   +A   F  +   G 
Sbjct: 550 ILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV 609

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+    +  I    + GR  EA     E+ E GL P    +  +  G   C + ++ + 
Sbjct: 610 LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF--CKQGEVEKA 667

Query: 319 IEL 321
            EL
Sbjct: 668 FEL 670



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 133/304 (43%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           SP    ++I+ + + G++D A  VF      +    ++  NSLL  L +  +    + + 
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M+      D  TY  LV A C +G +R A+  L EM +KG NP      L+++G+   
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G ++ A ++   M ++G V +  T+  +   +C++  +      +  + K GL  D +  
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    + G IDE  R+   +V  G       Y  +I G+ + G+ + A      M  
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  PN   + +LI    R      A   L EM +  L P +  +  + +GL +C    L
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 316 AEKI 319
           A K+
Sbjct: 457 ANKL 460



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 125/273 (45%), Gaps = 1/273 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I    K G +  A+ +F +  A      V   ++ +  L +      A  +   +  
Sbjct: 582 TVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKE 641

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG VPD  TY+ L++ +C  G++ +A E   EM  KG  P +   + LV GL  +G ++ 
Sbjct: 642 KGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQR 701

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ + M ++G   D  T++++I+  CKS  V     +++ +   G+      Y  L+ 
Sbjct: 702 ARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVH 761

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G +++A  L   +++ G     S +  +I G  +  +  +A   F EM  K   P
Sbjct: 762 GCCKEGDMEKAMNLFREMLQKGFATTLS-FNTLIDGYCKSCKIQEASQLFQEMIAKQIMP 820

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +   YT +I    + G+  EA     EM E  L
Sbjct: 821 DHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 853



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 114/271 (42%), Gaps = 18/271 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           ++ L   LC  +LF  A  ++ +MIR  +       ++L   W                 
Sbjct: 109 FSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLF--W---------------FR 151

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G + PV   D+L+      G L+ A  +         ++ L   NSL++ + K G +E
Sbjct: 152 NYGGSSPVV-FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMME 210

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++Y  +    +  DV TY  L+ A+ K G +  A R+L  + E G  P   +Y+ +I
Sbjct: 211 LFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVI 270

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +GM + G  D+A      M  KG  PN   YT++     R  R  EA     EM + GL 
Sbjct: 271 EGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK 330

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
           P       + DG    G  D   +I+ + VS
Sbjct: 331 PDYNACSALIDGFMREGDIDEVLRIKDVMVS 361



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 93/219 (42%)

Query: 52   VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
             L +N+L+   C+      A  L + MI K  +PD  TY  +++  C +GKM EA    +
Sbjct: 787  TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFK 846

Query: 112  EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            EM ++           L+ G    G       +  KM+ +G   D  T+  +I   CK  
Sbjct: 847  EMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKED 906

Query: 172  EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +    ++   V   G+    + + +LI A+ K   + EA +LL  + E G KP  +   
Sbjct: 907  NLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACN 966

Query: 232  PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             +++     G+ D+A   F  +K  G  P+      L+ 
Sbjct: 967  TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVN 1005



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 93/201 (46%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I+   K G ++ A  +F +    N     + Y SL++   ++      +AL  +M
Sbjct: 824  TYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKM 883

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + KG  PD+ TY +++ A C    + EA +   E+  KG        DLL+  L     L
Sbjct: 884  VAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDL 943

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              A +++++M + G    L   N+L+ +  ++G+++    ++  V  LGL  D +T   L
Sbjct: 944  TEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDL 1003

Query: 199  IPAVSKAGMIDEAFRLLHNLV 219
            +         ++A  L+  LV
Sbjct: 1004 VNGNLNDTDSEDARNLIKQLV 1024



 Score = 55.1 bits (131), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 68/157 (43%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
            M+  NL V   T + ++  + K G       +F K  A   +   + Y  +++A C+   
Sbjct: 848  MQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDN 907

Query: 68   FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               A+ L   ++ KG +     + +L+ A C    + EA + L EM + G  P +   + 
Sbjct: 908  LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNT 967

Query: 128  LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
            LV+    AG ++ A ++   +   G V D  T   L+
Sbjct: 968  LVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLV 1004


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 142/304 (46%), Gaps = 4/304 (1%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           L+   + K+ + D A+++F +    F CQ  +  YNSLL AL E   +  A +       
Sbjct: 58  LVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFET 117

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  P+ +TY IL+   C   +  +A+E L  M  +GF+P V     L+  L   GY+  
Sbjct: 118 MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSD 177

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKILI 199
           A ++ ++M ++G   D+  +N LI+   K G++    E++  + K   +  ++ +Y ++I
Sbjct: 178 ALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMI 237

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K G  DE+F + H + ++        Y+ +I G+   G  D A   + EM   G  
Sbjct: 238 NGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVS 297

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+  VY  ++    R GR  E       M + G   +   ++++  GL    K D A  I
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVV-SYNILIRGLFENAKVDEAISI 356

Query: 320 -ELL 322
            ELL
Sbjct: 357 WELL 360



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 133/256 (51%), Gaps = 4/256 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M  +    +P   + +I  F +   +++A+  F    +  C   V+ YN+L+  L +
Sbjct: 427 LDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSK 486

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + F  AYAL++ M++KG+ P+  TY++L+N  C   K+  A     +  +KGF P V+ 
Sbjct: 487 AERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKM 546

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++++ GL ++G +E A Q+ ++M ++  V +L T N+L+E   K  + E   +++  + 
Sbjct: 547 HNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 606

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR-RGQF 243
           + GL  D+ +Y I +  +     I +A   L++ V+ G  P    +  +++G    +G  
Sbjct: 607 QYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKGYM 666

Query: 244 DDAFCFFSEMKIKGHP 259
           +  F   S   +KG+P
Sbjct: 667 EPVFVPAS---MKGNP 679



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 3/305 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           SV P   + +++I    K G  D + E++++       Q +  Y++L+  LC      GA
Sbjct: 225 SVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGA 284

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + + M   G  PD   Y  ++N +  +G++ E  E  + M  +G    V   ++L++G
Sbjct: 285 TRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVV-SYNILIRG 343

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L     ++ A  +   + ++    D  T+  L+  +CK+G +   + +           D
Sbjct: 344 LFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLD 403

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              Y  +I  + + G +DE   +L  + + G KP P +   +I G  R  + +DA  FF 
Sbjct: 404 TFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFG 463

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  KG  P    Y  LI    +  RF EA   + EM + G  P    + L+ +GL    
Sbjct: 464 NMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGK 523

Query: 312 KHDLA 316
           K D+A
Sbjct: 524 KLDMA 528



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 134/304 (44%), Gaps = 2/304 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    ++  VD A+ ++      +C    + Y  L+  LC+    + A +++   
Sbjct: 336 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEA 395

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   Y+ ++N  C  G++ E    L +M+  G  P     + ++ G + A  L
Sbjct: 396 ENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKL 455

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +    M+ +G    + T+N+LI  + K+        +   + + G   ++ TY +L
Sbjct: 456 EDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLL 515

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +   +D A  L    +E G KP   ++  II G+   G+ +DA   +SEMK +  
Sbjct: 516 MNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNC 575

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   +  L+    +   F  A+     + + GL P    +++   GL +C  H +++ 
Sbjct: 576 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSC--HRISDA 633

Query: 319 IELL 322
           +  L
Sbjct: 634 VGFL 637



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/301 (17%), Positives = 133/301 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           EL+   +      T  +++    K+G ++ A+ +  +            Y+S++  LC  
Sbjct: 358 ELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCRE 417

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                   ++ +M + G  P+      ++N +  + K+ +A  F   M  KG  P V   
Sbjct: 418 GRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTY 477

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A     A  +V +M+++G+  ++ T++ L+  +C+  +++  + ++    +
Sbjct: 478 NTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALE 537

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   DV  + I+I  +  +G +++A +L   + +    P    +  +++G ++   F+ 
Sbjct: 538 KGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFER 597

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   +  +   G  P+   Y + +       R  +A  +L +  + G+ P +  ++++  
Sbjct: 598 ASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILVQ 657

Query: 306 G 306
           G
Sbjct: 658 G 658


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 121/255 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +++L+  LC+         L   M  +G VP+  T+  L++  C  GK+  A +  Q
Sbjct: 318 VFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQ 377

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G  P +   + L+ GL   G L+ A+++VN+M   G   D  TF +LI+  CK G
Sbjct: 378 MMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDG 437

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E  +E+   + + G+  D   +  LI  + + G + +A R+L +++  G KP    Y 
Sbjct: 438 DMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYT 497

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    ++G     F    EM+  GH P    Y  L+    + G+   A   L  M  +
Sbjct: 498 MVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNV 557

Query: 292 GLTPISRCFDLVTDG 306
           G+ P    ++++ DG
Sbjct: 558 GVAPNDITYNILLDG 572



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 132/292 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++++  F K G V NA  VF++      +  V+ +N+L+   C+       + L   M  
Sbjct: 252 NVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMES 311

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  PD  T++ L+N  C  G++ E      EM  +G  P       L+ G    G ++ 
Sbjct: 312 EGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDL 371

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +    M+ QG   DL T+N+LI  +CK G+++    +   +   GL  D  T+  LI 
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G ++ A  +   +VE+G +     +  +I G+ R G+  DA    ++M   G  P
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + P YTM+I    + G        L EM   G  P    ++ + +GL   G+
Sbjct: 492 DDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 543



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 116/262 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    K G +D    +F++          + + +L+   C+      A    + M
Sbjct: 320 TFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMM 379

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  PD  TY  L+N  C  G ++EA+  + EM+  G  P       L+ G    G +
Sbjct: 380 LAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDM 439

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ESA ++  +M+++G  LD   F +LI  +C+ G V     M   +   G   D  TY ++
Sbjct: 440 ESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMV 499

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G +   F+LL  +  DGH P    Y  ++ G+ ++GQ  +A      M   G 
Sbjct: 500 IDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGV 559

Query: 259 PPNRPVYTMLITMCGRGGRFVE 280
            PN   Y +L+    + G  V+
Sbjct: 560 APNDITYNILLDGHSKHGSSVD 581



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 2/272 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +  +N L+   C+      A  +   + ++G  P   ++  L++  C SG + E      
Sbjct: 248 IYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKG 307

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G  P V     L+ GL   G L+    + ++M  +G V +  TF +LI+  CK G
Sbjct: 308 VMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGG 367

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V+  ++ +  +   G+  D+ TY  LI  + K G + EA RL++ +   G KP    + 
Sbjct: 368 KVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFT 427

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  + G  + A      M  +G   +   +T LI+   R GR  +A   L +M   
Sbjct: 428 TLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSA 487

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           G  P    + +V D    C K D+    +LL+
Sbjct: 488 GFKPDDPTYTMVIDCF--CKKGDVKMGFKLLK 517



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 112/252 (44%), Gaps = 3/252 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G VD A++ F    A   +  ++ YN+L+  LC+V     A  L+  M
Sbjct: 355 TFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM 414

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PDK T+  L++  C  G M  A E  + M ++G          L+ GL   G +
Sbjct: 415 TASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRV 474

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M+  M+  GF  D  T+  +I+  CK G+V+   ++   +   G    V TY  L
Sbjct: 475 HDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNAL 534

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +  A  LL  ++  G  P    Y  ++ G  + G   D   F SE   KG 
Sbjct: 535 MNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVDVDIFNSE---KGL 591

Query: 259 PPNRPVYTMLIT 270
             +   YT L+ 
Sbjct: 592 VTDYASYTALVN 603



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 1/245 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           ++AL   ++  G+ P    + +L++ +C +G +  A+    E+  +G  P V   + L+ 
Sbjct: 232 SWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLIS 291

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   +G +E   ++   M  +G   D+ TF++LI  +CK G ++    ++  +C  GL  
Sbjct: 292 GCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVP 351

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  T+  LI    K G +D A +    ++  G +P    Y  +I G+ + G   +A    
Sbjct: 352 NGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 411

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           +EM   G  P++  +T LI  C + G    A      M E G+      F  +  GL   
Sbjct: 412 NEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCRE 471

Query: 311 GK-HD 314
           G+ HD
Sbjct: 472 GRVHD 476



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 4/236 (1%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL--LNAGYLESAKQMVNK 147
           +  L++A+  SG   +A +  + ++   F  P+RG + L++ +  L    +E +  +  +
Sbjct: 179 FDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLE 238

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           ++  G+   +  FN L+   CK+G+V     ++  + K GL   V ++  LI    K+G 
Sbjct: 239 VLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGD 298

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           ++E FRL   +  +G  P    ++ +I G+ + G+ D+    F EM  +G  PN   +T 
Sbjct: 299 VEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTT 358

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           LI    +GG+   A      M   G+ P    ++ + +GL  C   DL E   L+ 
Sbjct: 359 LIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGL--CKVGDLKEARRLVN 412


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 123/255 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  L +    +  Y L   M  +G V D R Y I+++ +C  GK+ +A + L+EM 
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KGF P V     ++ GL     L+ A  +  +   +   L++  ++SLI+   K G ++
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  +V T+  L+ A+ KA  I+EA     ++ E    P    Y  +I
Sbjct: 675 EAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+ AF F+ EM+ +G  P+   YT +I+   + G   EA          G  
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGV 794

Query: 295 PISRCFDLVTDGLKN 309
           P S C++ + +GL N
Sbjct: 795 PDSACYNAMIEGLSN 809



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 143/300 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + +T++++++   K   +D A  +F +     C    + + SL+  L +V  
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGR 462

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY +  +M+      +   Y  L+  + + G+  +  +  ++M ++  +P ++  + 
Sbjct: 463 VDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNT 522

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +  +  AG  E  + M  ++  + FV D  +++ LI  + K+G      E++YS+ + G
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG 582

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D   Y I+I    K G +++A++LL  +   G +P    Y  +I G+ +  + D+A+
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAY 642

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F E K K    N  +Y+ LI   G+ GR  EA   L E+ + GLTP    ++ + D L
Sbjct: 643 MLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDAL 702



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 46/361 (12%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    ++   L     T + +I    K   +D AVE+F          C   YN+++  
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R   KG +P    Y  ++      GK+ EA    +EM  K   P 
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMK-KDAAPN 376

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCV--- 177
           +   ++L+  L  AG L+ A ++ + M K G   ++ T N +++ +CKS ++ E C    
Sbjct: 377 LSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAIFE 436

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL---------------------- 215
           +M Y VC      D  T+  LI  + K G +D+A+++                       
Sbjct: 437 QMDYKVCT----PDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNF 492

Query: 216 --HNLVEDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             H   EDGHK           P   L    +  MF+ G+ +     F E+K +   P+ 
Sbjct: 493 FNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDA 552

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y++LI    + G   E       M E G    +R +++V DG   CGK + A   +LL
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKA--YQLL 610

Query: 323 E 323
           E
Sbjct: 611 E 611



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 138/324 (42%), Gaps = 3/324 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K        ++ S++I    K G  +   E+F       C      YN ++   C+ 
Sbjct: 541 EEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + AY L+  M  KGF P   TY  +++      ++ EA    +E   K     V   
Sbjct: 601 GKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIY 660

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +++++G   ++ T+NSL++ + K+ E+   +  + S+ +
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 720

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           L    +  TY ILI  + K    ++AF     + + G KP    Y  +I G+ + G   +
Sbjct: 721 LKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F   K  G  P+   Y  +I     G R ++A +   E    GL   ++   ++ D
Sbjct: 781 AGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLD 840

Query: 306 GLKNCGKHDLAEKIELLEVSLRSV 329
            L    K+D  E+  ++   LR  
Sbjct: 841 TLH---KNDCLEQAAIVGAVLRET 861



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  +L       ++ I+ FGK G VD A + F++  A   +   + Y S++  LC+
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   + +   VP    Y  ++  + S+GK  EA   L+    KG  P V  
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIA 345

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A ++  +M K+    +L T+N LI+ +C++G+++   E+  S+ 
Sbjct: 346 YNCILTCLRKMGKVDEALRVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQ 404

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K GL  +V T  I++  + K+  +DEA  +   +      P    +  +I G+ + G+ D
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVD 464

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DA+  + +M       N  VYT LI      GR  +      +M     +P
Sbjct: 465 DAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSP 515



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 1/246 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            + +++ M +  F P    Y  L+ A+ +           Q+M + G+ P V     L++
Sbjct: 152 GFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR 211

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G ++SA  ++++M       D+  +N  I++  K G+V+   + ++ +   GL  
Sbjct: 212 GFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKP 271

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  TY  +I  + KA  +DEA  +  +L ++   P    Y  +I G    G+FD+A+   
Sbjct: 272 DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL 331

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
              + KG  P+   Y  ++T   + G+  EA     EM +    P    ++++ D L   
Sbjct: 332 ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKK-DAAPNLSTYNILIDMLCRA 390

Query: 311 GKHDLA 316
           GK D A
Sbjct: 391 GKLDCA 396



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 139/319 (43%), Gaps = 1/319 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M+      +    + +I  F K G VD+A+ + ++  + +    ++LYN  + 
Sbjct: 187 MLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCID 246

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  +V     A+     +   G  PD+ TY  ++   C + ++ EA E  + +      P
Sbjct: 247 SFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G  +AG  + A  ++ +   +G +  +  +N ++  + K G+V+  + ++
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVF 366

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K     ++STY ILI  + +AG +D AF L  ++ + G  P       ++  + + 
Sbjct: 367 EEM-KKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + D+A   F +M  K   P+   +  LI   G+ GR  +A     +M +      S  +
Sbjct: 426 QKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVY 485

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             +     N G+ +   KI
Sbjct: 486 TSLIKNFFNHGRKEDGHKI 504



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+ A   V        L ++M   G+ P    +  L+  +   G++  A   L EM 
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
               +  +   ++ +      G ++ A +  +++   G   D  T+ S+I  +CK+  ++
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             VEM+  + K         Y  +I     AG  DEA+ LL      G  P    Y  I+
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + + G+ D+A   F EMK K   PN   Y +LI M  R G+   A      M + GL 
Sbjct: 351 TCLRKMGKVDEALRVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLF 409

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P  R  +++ D L  C    L E   + E
Sbjct: 410 PNVRTVNIMVDRL--CKSQKLDEACAIFE 436



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 110/270 (40%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
            C   YNSLL  +   + F     ++  M   GF P   T   +V +   + K+RE  + 
Sbjct: 96  HCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLSCVKANKLREGFDV 155

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +Q M    F P       L+       + +    +  +M + G+   +  F +LI    K
Sbjct: 156 VQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAK 215

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G V+  + +   +    L AD+  Y + I +  K G +D A++  H +  +G KP    
Sbjct: 216 EGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVT 275

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I  + +  + D+A   F  ++     P    Y  +I   G  G+F EA + L    
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             G  P    ++ +   L+  GK D A ++
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALRV 365



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 35/245 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 607 YQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666

Query: 62  LCEVKLFHGAYALIRRMIRKGF-----------------------------------VPD 86
             +V     AY ++  +++KG                                     P+
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPN 726

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           + TY IL+N  C   K  +A  F QEM  +G  P       ++ GL  AG +  A  + +
Sbjct: 727 QVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +    G V D   +N++IE +           ++    + GL     T  +L+  + K  
Sbjct: 787 RFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKND 846

Query: 207 MIDEA 211
            +++A
Sbjct: 847 CLEQA 851


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 36/323 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A ++FNK      +  V  YN L+  LC    +  A  L+  M+ K 
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQ----------------------------------- 107
             PD   +  L++A+   GK+ EA+                                   
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEG 375

Query: 108 -EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E  +EMS +G          L+ G   A   ++A+ +  +M+  G   D+ T+N L++ 
Sbjct: 376 MEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDG 435

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +C +G VE  + ++  + K  +  D+ TY  +I A+ KAG +++ + L  +L   G KP 
Sbjct: 436 LCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPN 495

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  ++ G  R+G  ++A   F EMK  G  PN   Y  LI    R G    +A  + 
Sbjct: 496 VVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIK 555

Query: 287 EMTEMGLTPISRCFDLVTDGLKN 309
           EM   G    +  F LVT+ L +
Sbjct: 556 EMRSCGFAGDASTFGLVTNMLHD 578



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 129/278 (46%), Gaps = 1/278 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G  D A+ + NK      +  V++YN+++  LC+ K    A+ L  +M
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM 276

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY  L++  C+ G+  +A   L +M +K  NP +   + L+   +  G L
Sbjct: 277 ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL 336

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A+++ ++M+K      D+  +N+LI+  CK   VE  +E++  + + GL  +  TY  
Sbjct: 337 VEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTT 396

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +A   D A  +   +V DG  P    Y  ++ G+   G  + A   F  M+ + 
Sbjct: 397 LIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRD 456

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +   YT +I    + G+  +  +    ++  G+ P
Sbjct: 457 MKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKP 494



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 125/254 (49%), Gaps = 1/254 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           +I+ F K G +  A +++++   + +C   V+ YN+L+   C+ K       + R M ++
Sbjct: 326 LIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQR 385

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G V +  TY  L++ +  +     AQ   ++M   G +P +   ++L+ GL N G +E+A
Sbjct: 386 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETA 445

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             +   M K+   LD+ T+ ++IE +CK+G+VE   +++ S+   G+  +V TY  ++  
Sbjct: 446 LVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSG 505

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             + G+ +EA  L   + EDG  P    Y  +I+   R G    +     EM+  G   +
Sbjct: 506 FCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGD 565

Query: 262 RPVYTMLITMCGRG 275
              + ++  M   G
Sbjct: 566 ASTFGLVTNMLHDG 579



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 134/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+ +F           ++ ++ LL A+ ++  F    +L  +M   G   +  TY+I
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            +N +C   ++  A   L +M   G+ P +   + L+ G  +   +  A  +V++M++ G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  TF +L+  + +  +    V +   +   G   D+ TY  +I  + K G  D A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL+ + +   +    +Y  II G+ +    DDAF  F++M+ KG  P+   Y  LI+  
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L +M E  + P    F+ + D     GK   AEK+
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKL 342



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 126/289 (43%), Gaps = 1/289 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +S +  T S+ I  F +   +  A+ +  K         ++  NSLL   C  
Sbjct: 99  EQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL+ +M+  G+ PD  T+  LV+      K  EA   ++ M  KG  P +   
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             ++ GL   G  + A  ++NKM K     D+  +N++I+ +CK   ++   +++  +  
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  +   G   +A RLL +++E    P    +  +I    + G+  +
Sbjct: 279 KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVE 338

Query: 246 AFCFFSEMKIKGHP-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           A   + EM    H  P+   Y  LI    +  R  E      EM++ GL
Sbjct: 339 AEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGL 387



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 79/192 (41%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R+ L + +L    L+ A  +   M+K      +  F+ L+  I K  + +  + +   + 
Sbjct: 43  RENLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQ 102

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+  ++ TY I I    +   +  A  +L  +++ G+ P       ++ G     +  
Sbjct: 103 NLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRIS 162

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M   G+ P+   +T L+    +  +  EA   +  M   G  P    +  V 
Sbjct: 163 EAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVI 222

Query: 305 DGLKNCGKHDLA 316
           +GL   G+ DLA
Sbjct: 223 NGLCKRGEPDLA 234


>gi|449437886|ref|XP_004136721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
 gi|449501176|ref|XP_004161299.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g06400, mitochondrial-like [Cucumis sativus]
          Length = 1037

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 149/315 (47%), Gaps = 4/315 (1%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
            M+    S++P T +++I ++ + GL + A++ + +    N +     Y  L+ +LCE K 
Sbjct: 709  MRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMKEINIKPNANTYKYLIMSLCESKR 768

Query: 68   --FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 A  L + MI   ++PDK      +   C   ++ +A++ +  +   GF+ P+   
Sbjct: 769  RKVDEAITLFQEMIHSKYIPDKELLETYLGCLCKLSRLSDAKKCIDHLRKVGFSIPL-TY 827

Query: 126  DLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             L ++ L  A  L+ A  ++ +++  +   LD   + SL+  + ++G  E  +    S+ 
Sbjct: 828  SLYIRALCRARKLDEALTLLEEVVGDERSKLDSYIYGSLVYGLLQTGRTEEALAKMNSMK 887

Query: 185  KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            ++G+   V  Y   I    K      A  +L  ++++G +P  + Y+ I+ G    G+  
Sbjct: 888  QVGINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSAIVHGYMNMGKVC 947

Query: 245  DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            +A+  F+ MK  G  P+   YTMLI+   + GR  EA   + +M   G+ P S  F  V 
Sbjct: 948  EAWKVFNYMKKYGPSPDFKAYTMLISCLCKAGRSEEALEIISDMLNNGIAPSSINFRTVI 1007

Query: 305  DGLKNCGKHDLAEKI 319
             GL   GKH LA  +
Sbjct: 1008 FGLNREGKHVLARDV 1022



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 132/290 (45%), Gaps = 8/290 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+ Y+L    +T +++I  +G   L   ++ V++K     C+   ++Y +L+ +L
Sbjct: 214 KLLEEMESYSLLKDIKTWTILISLYGNAKLTGKSLMVYSKMKESGCEPDGVVYKTLICSL 273

Query: 63  CEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                   A    + M +KG  V D +   +L+++   SG      +  ++M    FN  
Sbjct: 274 SAAGKPELAMEFYQEMAKKGISVVDMKMCKMLLSSLAGSGDTASVLDIAKDMV-ALFN-- 330

Query: 122 VRGRDL---LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           V+ RD+   +++    +  ++ A + +  +  +G VLD E F  LI  +C++  +E  +E
Sbjct: 331 VQERDVYHYILKSFCISRRIKEALEFIRDLNSKGIVLDSEYFEILIGGLCRANRIEDALE 390

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G   D   Y I+I    +   + +A  L  N+ E G+ P  S Y  +++ +F
Sbjct: 391 LINIIKRKG-DVDGKIYGIIINWYLRKNEVSKALDLFQNMKEMGYFPTTSTYTQLMQHLF 449

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
              +++  F  + EM  KG   +      ++    R  R  EA N    M
Sbjct: 450 SLAEYEKGFELYKEMLEKGIELDTVAIMTVVVGNVRQNRITEAWNVFRTM 499



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 104/250 (41%), Gaps = 4/250 (1%)

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K F    +L   M R+G      T+ I++  +  +G    A +  +EM +    P     
Sbjct: 697 KDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIALKSYEEMKEINIKPNANTY 756

Query: 126 DLLVQGLLNAGY--LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             L+  L  +    ++ A  +  +MI   ++ D E   + +  +CK   +    +    +
Sbjct: 757 KYLIMSLCESKRRKVDEAITLFQEMIHSKYIPDKELLETYLGCLCKLSRLSDAKKCIDHL 816

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS-LYAPIIKGMFRRGQ 242
            K+G    + TY + I A+ +A  +DEA  LL  +V D      S +Y  ++ G+ + G+
Sbjct: 817 RKVGFSIPL-TYSLYIRALCRARKLDEALTLLEEVVGDERSKLDSYIYGSLVYGLLQTGR 875

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A    + MK  G  P   VYT  I    +  +   A   L +M + G  P    +  
Sbjct: 876 TEEALAKMNSMKQVGINPTVHVYTSFIVYSFKEKQTRRALEILAKMLQEGCEPSIATYSA 935

Query: 303 VTDGLKNCGK 312
           +  G  N GK
Sbjct: 936 IVHGYMNMGK 945



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 90/211 (42%), Gaps = 9/211 (4%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
           FN Q+  + Y+ +L + C  +    A   IR +  KG V D   + IL+   C + ++ +
Sbjct: 329 FNVQERDV-YHYILKSFCISRRIKEALEFIRDLNSKGIVLDSEYFEILIGGLCRANRIED 387

Query: 106 AQEFLQEMSDKGFNPPVRGR--DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
           A E +  +  KG    V G+   +++   L    +  A  +   M + G+     T+  L
Sbjct: 388 ALELINIIKRKG---DVDGKIYGIIINWYLRKNEVSKALDLFQNMKEMGYFPTTSTYTQL 444

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           ++ +    E E   E+Y  + + G+  D      ++    +   I EA+ +   +    +
Sbjct: 445 MQHLFSLAEYEKGFELYKEMLEKGIELDTVAIMTVVVGNVRQNRITEAWNVFRTM---EN 501

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           KP     +  I+ +FR  + D+     +EM+
Sbjct: 502 KPTWKSCSVFIRELFRISRTDEIVKVLNEMQ 532



 Score = 41.6 bits (96), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 5/174 (2%)

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G+    ET+N  I+      + +    ++Y + + G      T+ I+I   ++AG+ + A
Sbjct: 678 GYNHTTETYNMAIKIAGLGKDFKHMRSLFYEMRRRGCSITPYTWTIMIMQYARAGLTEIA 737

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGM--FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +    + E   KP  + Y  +I  +   +R + D+A   F EM    + P++ +    +
Sbjct: 738 LKSYEEMKEINIKPNANTYKYLIMSLCESKRRKVDEAITLFQEMIHSKYIPDKELLETYL 797

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
               +  R  +A   +  + ++G + I   + L    L  C    L E + LLE
Sbjct: 798 GCLCKLSRLSDAKKCIDHLRKVGFS-IPLTYSLYIRAL--CRARKLDEALTLLE 848


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 137/296 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G +D A  + NK  A   +  V+++N+++ +LC+ +    A  L + M
Sbjct: 151 TYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEM 210

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY+ L++  CS G+  +A + L +M +K  NP +   + L+   +  G  
Sbjct: 211 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKF 270

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + MIK+    D+ T+NSLI   C    ++   +M+  +       D+ TY  L
Sbjct: 271 VEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K+  +++   L   +   G       Y  +I+G+F  G  D+A   F +M   G 
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           PP+   Y++L+      G+  +A      M +  +      +  + +G+   GK D
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 446



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 127/270 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ F K G    A ++ +     +    +  YNSL+   C       A  +   M
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFM 315

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K   PD  TY  L+  +C S ++ +  E  +EMS +G          L+QGL + G  
Sbjct: 316 VSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 375

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+++  +M+  G   D+ T++ L++ +C +G++E  +E++  + K  +  D+  Y  +
Sbjct: 376 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 435

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +D+ + L  +L   G KP    Y  +I G+  +    +A+    +MK  G 
Sbjct: 436 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGP 495

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            P+   Y  LI    R G    +A  + EM
Sbjct: 496 LPDSGTYNTLIRAHLRDGDKAASAELIREM 525



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 2/231 (0%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T + +I  F  H  +D A ++F    + +C   +  YN+L+   C+ K     
Sbjct: 284 SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDG 343

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L R M  +G V D  TY  L+      G    AQ+  ++M   G  P +    +L+ G
Sbjct: 344 TELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 403

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G LE A ++ + M K    LD+  + ++IE +CK+G+V+   +++ S+   G+  +
Sbjct: 404 LCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPN 463

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           V TY  +I  +    ++ EA+ LL  + EDG  P    Y  +I+   R G 
Sbjct: 464 VVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 129/272 (47%), Gaps = 2/272 (0%)

Query: 26  EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH--GAYALIRRMIRKGF 83
            +GK   +D+A+ +F           +  +N LL A+ ++K F    + AL+ +M++ G+
Sbjct: 16  SWGKDLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGY 75

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
            P   T + L+N +C   ++ +A   + +M + G+ P       L+ GL        A  
Sbjct: 76  EPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVA 135

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +V++M+++G   +L T+  ++  +CK G+++    +   +    + ADV  +  +I ++ 
Sbjct: 136 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLC 195

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K   +D+A  L   +   G +P    Y+ +I  +   G++ DA    S+M  K   PN  
Sbjct: 196 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 255

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +  LI    + G+FVEA     +M +  + P
Sbjct: 256 TFNALIDAFVKEGKFVEAEKLHDDMIKRSIDP 287



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 140/303 (46%), Gaps = 1/303 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I     +G   +A ++ +          ++ +N+L+ A  +   F  A  L   M
Sbjct: 221 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 280

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++   PD  TY  L+N +C   ++ +A++  + M  K   P +   + L++G   +  +
Sbjct: 281 IKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRV 340

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E   ++  +M  +G V D  T+ +LI+ +   G+ +   +++  +   G+  D+ TY IL
Sbjct: 341 EDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSIL 400

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G +++A  +   + +   K    +Y  +I+GM + G+ DD +  F  + +KG 
Sbjct: 401 LDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGV 460

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD-LVTDGLKNCGKHDLAE 317
            PN   Y  +I+         EA   L +M E G  P S  ++ L+   L++  K   AE
Sbjct: 461 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 520

Query: 318 KIE 320
            I 
Sbjct: 521 LIR 523



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y  ++  LC+      A+ L+ +M
Sbjct: 116 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 175

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                  D   +  ++++ C    + +A    +EM  KG  P V     L+  L + G  
Sbjct: 176 EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRW 235

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A Q+++ MI++    +L TFN+LI+   K G+     +++  + K  +  D+ TY  L
Sbjct: 236 SDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSL 295

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +D+A ++   +V     P    Y  +IKG  +  + +D    F EM  +G 
Sbjct: 296 INGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGL 355

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT LI      G    A     +M   G+ P    + ++ DGL N GK  L + 
Sbjct: 356 VGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK--LEKA 413

Query: 319 IELLEVSLRS 328
           +E+ +   +S
Sbjct: 414 LEVFDYMQKS 423



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 1/194 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+     G  DNA +VF +  +      ++ Y+ LL  LC       A  +   M
Sbjct: 361 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 420

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  ++   C +GK+ +  +    +S KG  P V   + ++ GL +   L
Sbjct: 421 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  ++ KM + G + D  T+N+LI    + G+     E+   +       D ST   L
Sbjct: 481 QEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG-L 539

Query: 199 IPAVSKAGMIDEAF 212
           +  +   G +D++F
Sbjct: 540 VANMLHDGRLDKSF 553



 Score = 57.4 bits (137), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 55/111 (49%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +  + M+   + +     + +IE   K G VD+  ++F   +    +  V+ YN+++  L
Sbjct: 415 EVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGL 474

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           C  +L   AYAL+++M   G +PD  TY  L+ A    G    + E ++EM
Sbjct: 475 CSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 525


>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Glycine max]
          Length = 808

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 151/307 (49%), Gaps = 10/307 (3%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALC 63
           +E MK  +L  + +  S +I  +G+ G +D A+++F+      NC   V+  NSLL  L 
Sbjct: 114 LENMKAQHLKPTREAFSALILAYGESGSLDRALQLFHTVREMHNCLPTVVASNSLLNGLV 173

Query: 64  EVKLFHGAYALIRRMIRK----GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
           +      A  L  +M++     G V D  T +I+V   C+ GK+ E +  +++   KG  
Sbjct: 174 KSGKVDVALQLYDKMLQTDDGTGAVVDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCV 233

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V   ++++ G    G L+ A + + ++  +G +  +ET+ +LI   CK+GE E   ++
Sbjct: 234 PHVVFYNMIIDGYCKKGDLQCATRTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQL 293

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
              +   GL  +V  +  +I A  K G++ +A   +  + E G  P  + Y  +I    +
Sbjct: 294 LTEMAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCK 353

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  +A  F  + K +G  PN+  YT L+    + G +V+AA  L  + E+G  P    
Sbjct: 354 GGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKP---- 409

Query: 300 FDLVTDG 306
            DLV+ G
Sbjct: 410 -DLVSYG 415



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 139/313 (44%), Gaps = 2/313 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   T S++++     G ++    +        C   V+ YN ++   C+      A   
Sbjct: 199 VDNYTTSIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRT 258

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           ++ +  KG +P   TY  L+N +C +G+     + L EM+ +G N  V+  + ++     
Sbjct: 259 LKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFK 318

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G +  A + + +M + G   D+ T+N++I   CK G ++   E      + GL  +  +
Sbjct: 319 YGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFS 378

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  L+ A  K G   +A  +L  + E G KP    Y   I G+   G+ D A     +M 
Sbjct: 379 YTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMM 438

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            KG  P+  +Y +L++   + GRF      L EM +  + P    F  + DG    G  +
Sbjct: 439 EKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNG--E 496

Query: 315 LAEKIELLEVSLR 327
           L E I++ +V +R
Sbjct: 497 LDEAIKIFKVIIR 509



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 144/320 (45%), Gaps = 2/320 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           +T++ +K   +  + +T   +I  F K G  +   ++  +  A      V ++N+++ A 
Sbjct: 257 RTLKELKMKGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAE 316

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            +  L   A   +RRM   G  PD  TY  ++N  C  G+++EA EFL++  ++G  P  
Sbjct: 317 FKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNK 376

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+      G    A  M+ ++ + G   DL ++ + I  +   GE++  + +   
Sbjct: 377 FSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREK 436

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D   Y +L+  + K G       LL  +++   +P   ++A ++ G  R G+
Sbjct: 437 MMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGE 496

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D+A   F  +  KG  P    Y  +I    + G+  +A + L +M  +   P    +  
Sbjct: 497 LDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYST 556

Query: 303 VTDGLKNCGKHDLAEKIELL 322
           V DG     +HD++  +++ 
Sbjct: 557 VIDGY--VKQHDMSSALKMF 574



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 136/347 (39%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+++ +  + +I+   K+GLV  A E   +     C   +  YN+++   C+   
Sbjct: 297 MAARGLNMNVKVFNNVIDAEFKYGLVTKAAETMRRMAEMGCGPDITTYNTMINFSCKGGR 356

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   + +   +G +P+K +Y  L++A+C  G   +A   L  +++ G  P +     
Sbjct: 357 IKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGMLFRIAEIGEKPDLVSYGA 416

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG---------------- 171
            + G++  G ++ A  +  KM+++G   D + +N L+  +CK+G                
Sbjct: 417 FIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRN 476

Query: 172 -------------------EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
                              E++  ++++  + + G+   +  Y  +I    K G + +A 
Sbjct: 477 VQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDAL 536

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L+ +    H P    Y+ +I G  ++     A   F +M      PN   YT LI   
Sbjct: 537 SCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGF 596

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +    + A      M    L P    +  +  G    GK + A  I
Sbjct: 597 CKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSI 643



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 107/241 (44%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           HG +D A+ V  K           +YN L+  LC+   F     L+  M+ +   PD   
Sbjct: 424 HGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYV 483

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +A L++ +  +G++ EA +  + +  KG +P + G + +++G    G +  A   +NKM 
Sbjct: 484 FATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMK 543

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                 D  T++++I+   K  ++   ++M+  + K     +V TY  LI    K   + 
Sbjct: 544 NVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMI 603

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A ++   +      P    Y  ++ G F+ G+ + A   F  M + G PPN   +  LI
Sbjct: 604 RAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLI 663

Query: 270 T 270
            
Sbjct: 664 N 664



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%)

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           +M+ KG  PD + Y +L++  C +G+    +  L EM D+   P V     L+ G +  G
Sbjct: 436 KMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNG 495

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            L+ A ++   +I++G    +  +N++I+  CK G++   +     +  +    D  TY 
Sbjct: 496 ELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDEYTYS 555

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I    K   +  A ++   +++   KP    Y  +I G  ++     A   F  MK  
Sbjct: 556 TVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAEKVFRGMKSF 615

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
              PN   YT L+    + G+  +A +    M   G  P    F  + +GL N  
Sbjct: 616 DLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGLTNTA 670



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 124/283 (43%), Gaps = 7/283 (2%)

Query: 46  FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105
           F+C    + ++SLL  L   ++F     ++  M  +   P +  ++ L+ A+  SG +  
Sbjct: 85  FSCSLDGVAHSSLLKLLASFRVFPEIELVLENMKAQHLKPTREAFSALILAYGESGSLDR 144

Query: 106 AQEFLQEMSD-KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK----QGFVLDLETF 160
           A +    + +     P V   + L+ GL+ +G ++ A Q+ +KM++     G V+D  T 
Sbjct: 145 ALQLFHTVREMHNCLPTVVASNSLLNGLVKSGKVDVALQLYDKMLQTDDGTGAVVDNYTT 204

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           + +++ +C  G++E    +       G    V  Y ++I    K G +  A R L  L  
Sbjct: 205 SIVVKGLCNLGKIEEGRRLVKDRWGKGCVPHVVFYNMIIDGYCKKGDLQCATRTLKELKM 264

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y  +I G  + G+F+      +EM  +G   N  V+  +I    + G   +
Sbjct: 265 KGVLPTVETYGALINGFCKAGEFEAVDQLLTEMAARGLNMNVKVFNNVIDAEFKYGLVTK 324

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           AA  +  M EMG  P    ++ + +   +C    + E  E LE
Sbjct: 325 AAETMRRMAEMGCGPDITTYNTMINF--SCKGGRIKEADEFLE 365



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 114/280 (40%), Gaps = 14/280 (5%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N Q  V ++ +L+           A  + + +IRKG  P    Y  ++  +C  GKM +A
Sbjct: 476 NVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDA 535

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
              L +M +    P       ++ G +    + SA +M  +M+K  F  ++ T+ SLI  
Sbjct: 536 LSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLING 595

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            CK  ++    +++  +    L  +V TY  L+    KAG  ++A  +   ++ +G  P 
Sbjct: 596 FCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPN 655

Query: 227 PSLYAPIIKGMFRRG------QFDDA--------FCFFSEMKIKGHPPNRPVYTMLITMC 272
            + +  +I G+          +  D+          FF+ M  +G       Y  +I   
Sbjct: 656 DATFHYLINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCL 715

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            + G    A   L +M   G    S CF  +  GL + GK
Sbjct: 716 CKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKGK 755



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/279 (18%), Positives = 116/279 (41%), Gaps = 15/279 (5%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+       + +++ F ++G +D A+++F           ++ YN+++   C+      A
Sbjct: 476 NVQPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDA 535

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            + + +M      PD+ TY+ +++ +     M  A +   +M    F P V     L+ G
Sbjct: 536 LSCLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLING 595

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
                 +  A+++   M     V ++ T+ +L+    K+G+ E    ++  +   G   +
Sbjct: 596 FCKKADMIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPN 655

Query: 192 VSTYKILIPAVSKAG----MIDEAFRLLHN----------LVEDGHKPFPSLYAPIIKGM 237
            +T+  LI  ++       +I+E   + +           ++ +G     + Y  +I  +
Sbjct: 656 DATFHYLINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCL 715

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLITMCGRG 275
            + G  D A    ++M  KG   +   +T ML  +C +G
Sbjct: 716 CKHGMVDTAQLLLTKMLTKGFLIDSVCFTAMLHGLCHKG 754



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 14/181 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  + +    T S +I+ + K   + +A+++F +      +  V+ Y SL+   C+   
Sbjct: 542 MKNVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKAD 601

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  + R M     VP+  TY  LV  +  +GK  +A    + M   G  P       
Sbjct: 602 MIRAEKVFRGMKSFDLVPNVVTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHY 661

Query: 128 LVQGLLNAG----YLESAKQMVNK----------MIKQGFVLDLETFNSLIETICKSGEV 173
           L+ GL N       +E    M N+          M+ +G+   +  +NS+I  +CK G V
Sbjct: 662 LINGLTNTATSPVLIEEKDSMENERSLILDFFTMMLSEGWDQVIAAYNSVIVCLCKHGMV 721

Query: 174 E 174
           +
Sbjct: 722 D 722


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +   +  + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  + K G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 144 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAM 203

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G + +  TF +LI+  CK+G V
Sbjct: 204 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRV 263

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 264 DLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTL 323

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 383

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P  R + ++ +    C K D+ +  +LL+
Sbjct: 384 KPDDRTYTMIINEF--CKKGDVWKGSKLLK 411



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+A E+F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+      G +++A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 INEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 4/233 (1%)

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+ A+  SG +R+A E  +   +     P      +++ L+   Y +       ++++ G
Sbjct: 78  LITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECG 137

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G ++E F
Sbjct: 138 YPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGF 197

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           RL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +T LI   
Sbjct: 198 RLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGH 257

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK----HDLAEKIEL 321
            + GR   A     +M    L P    ++ +  GL   G     HDL +++ +
Sbjct: 258 CKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSM 310



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 113/301 (37%), Gaps = 37/301 (12%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           LS +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  LSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L 
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLN 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G                                   +  DV TY +LI
Sbjct: 195 EGFRLKSAMLASG-----------------------------------VQPDVYTYSVLI 219

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K   +D+A  L   ++  G  P    +  +I G  + G+ D A   + +M  +   
Sbjct: 220 NGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLL 279

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P+   Y  LI    + G   +A + + EM+  GL P    +  + DG   C + DL    
Sbjct: 280 PDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGC--CKEGDLDTAF 337

Query: 320 E 320
           E
Sbjct: 338 E 338


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 145 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 204

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM  A     EM  KG  P       L+ G    G ++
Sbjct: 205 ASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 264

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 265 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM++    + G   + +  L EM   G  P    ++++ +G
Sbjct: 385 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 121/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               GA  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 226 SKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 285

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 286 NTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQ 345

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  I+    ++G    
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWK 405

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 406 GSKLLKEMQRDGHAPSVVTYNVLM 429



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 75  FSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 134

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 135 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 194

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++    ++  +   GL  +  T+  LI
Sbjct: 195 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLI 254

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 255 DGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLK 314

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 315 PDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 375 LREMLSVGLK 384



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 100/218 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D A  +F++          + + +L+   C+      A  + ++M
Sbjct: 214 TYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 273

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A + + EMS KG  P       L+ G    G L
Sbjct: 274 LSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDL 333

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +GL  D  TY ++
Sbjct: 334 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMI 393

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +    K G + +  +LL  +  DGH P    Y  ++ G
Sbjct: 394 VNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
          Length = 1494

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 145/332 (43%), Gaps = 9/332 (2%)

Query: 3   KTIELMKPYNL----SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           + +E+ +  NL    S + + L+ I+   GK      AVE+F +  A      V +YN++
Sbjct: 202 RALEVYEWLNLRHWYSPNARMLATILSVLGKANQEALAVEIFARAEA-AXGNTVQVYNAM 260

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE--AQEFLQEMSDK 116
           +        F     L+  M  +G  PD  ++  L+NA   SG M    A E L E+   
Sbjct: 261 MGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRS 320

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +   + L+        LE A ++ N M+      DL T+N++I    + G     
Sbjct: 321 GIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREA 380

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  +   G   D  TY  L+ A ++ G +D+   +  ++V+ G       Y  II  
Sbjct: 381 GRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHM 440

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
             +RGQ D AF  +S+MK+ G  P+   YT+LI   G+     EAA  + EM    + P 
Sbjct: 441 YGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVMSEMLNAXVKPT 500

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            R F  +  G    GK   AE  E  +  LRS
Sbjct: 501 LRTFSALICGYAKAGKRVEAE--ETFDCMLRS 530



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 126/284 (44%), Gaps = 3/284 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+E+ N+      Q  ++ YN+L+ A         A  +   M+     PD  TY  +++
Sbjct: 310 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 369

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +   G  REA    +++  KGF P     + L+      G ++  K++   M+K GF  
Sbjct: 370 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 429

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D  T+N++I    K G+ +   ++Y  +   G   D  TY +LI ++ KA MI EA  ++
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++    KP    ++ +I G  + G+  +A   F  M   G  P+   Y++++ +  R 
Sbjct: 490 SEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 549

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               +A     EM      P    ++++   L+  GK +  E +
Sbjct: 550 NESGKAMKLYQEMVLHSFKPDHALYEVM---LRVLGKENREEDV 590



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 128/291 (43%), Gaps = 3/291 (1%)

Query: 4   TIELMKPYNLS-VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            IEL+     S + P   T + +I    +   ++ AV+V+N   A  CQ  +  YN+++ 
Sbjct: 310 AIELLNEVRRSGIQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMIS 369

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                 +   A  L + +  KGF+PD  TY  L+ A+   G + + +E  ++M   GF  
Sbjct: 370 VYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGK 429

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++      G  + A Q+ + M   G   D  T+  LI+++ K+  ++   E+ 
Sbjct: 430 DEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMIKEAAEVM 489

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +    +   + T+  LI   +KAG   EA      ++  G KP    Y+ ++  + R 
Sbjct: 490 SEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVMLDILLRF 549

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +   A   + EM +    P+  +Y +++ + G+  R  +    + +M E+
Sbjct: 550 NESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREEDVHKVVKDMEEL 600



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 124/305 (40%)

Query: 15   VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            V  +  + +I  +   G  + A  +FN          V   N L+ AL         Y +
Sbjct: 812  VDRKVWNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVV 871

Query: 75   IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            I+ +   GF   K +  ++++A+  +G + E ++  Q M   G+ P +    +++  L  
Sbjct: 872  IQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAK 931

Query: 135  AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
               +   + MV++M    F  DL  +NS+++     G+ +   ++Y  + + GL  D  T
Sbjct: 932  GKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDT 991

Query: 195  YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            Y  LI    +    +E   L+H +   G +P    Y  +I    +    + A   F  + 
Sbjct: 992  YNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLL 1051

Query: 255  IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             K    +R  Y +++ M    G   +A   L  M E G+ P      L+       G+ +
Sbjct: 1052 SKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPE 1111

Query: 315  LAEKI 319
             AEK+
Sbjct: 1112 EAEKV 1116



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/293 (21%), Positives = 129/293 (44%), Gaps = 9/293 (3%)

Query: 30   HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            H L+D A E   K   F+    V ++  ++ A  ++KL+  A +L+  + +K  + D++ 
Sbjct: 763  HYLIDQAEE---KGLLFDD---VSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKV 816

Query: 90   YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
            +  L++A+ +SG    A+     M   G +P V   + L+Q L+  G L+    ++ ++ 
Sbjct: 817  WNALIHAYAASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQ 876

Query: 150  KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
              GF +   +   +++    +G +    ++Y  +   G    +  Y+I+I  ++K   + 
Sbjct: 877  DMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVR 936

Query: 210  EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +   ++  +     KP  S++  ++K     G F      +  ++  G  P+   Y  LI
Sbjct: 937  DVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLI 996

Query: 270  TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             M  R  R  E  + + EM  +GL P     D     +   GK  + E+ E L
Sbjct: 997  LMYCRDRRPEEGLSLMHEMRRVGLEP---KLDTYKSLISAFGKLQMVEQAEEL 1046



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 2/240 (0%)

Query: 78   MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            M   G+ P    Y I++       ++R+ +  + EM    F P +   + +++     G 
Sbjct: 910  MKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGD 969

Query: 138  LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             +   Q+   + + G   D +T+N+LI   C+    E  + + + + ++GL   + TYK 
Sbjct: 970  FKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKS 1029

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-GQFDDAFCFFSEMKIK 256
            LI A  K  M+++A  L   L+    K   S Y  ++K MFR  G    A      MK  
Sbjct: 1030 LISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMK-MFRNSGNHSKAEKLLGVMKEA 1088

Query: 257  GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            G  P      +L+      G+  EA   L  +   GL   +  +  V D     G H++A
Sbjct: 1089 GVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVA 1148



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/300 (20%), Positives = 125/300 (41%)

Query: 1    MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
            ++  I+ ++     +S  +++L+++ F   G +    +++    A      + LY  ++ 
Sbjct: 868  LYVVIQELQDMGFKISKSSITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIG 927

Query: 61   ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             L + K      A++  M    F PD   +  ++  +   G  ++  +  Q + + G  P
Sbjct: 928  LLAKGKRVRDVEAMVSEMEVAXFKPDLSIWNSVLKLYTGIGDFKKTGQVYQLIQEAGLKP 987

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 + L+         E    ++++M + G    L+T+ SLI    K   VE   E++
Sbjct: 988  DEDTYNTLILMYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELF 1047

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
              +       D S Y I++     +G   +A +LL  + E G +P  +    ++      
Sbjct: 1048 EGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGS 1107

Query: 241  GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            GQ ++A      +K++G P +   Y+ +I    + G    A   L+EM + GL P  R +
Sbjct: 1108 GQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAYLKNGDHNVAIQKLMEMKKDGLEPDHRIW 1167



 Score = 57.4 bits (137), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 1/243 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y SLL    E +LF  A  +   M   G  P    Y  +V  +C  G    A   + + 
Sbjct: 710 MYESLLLCCEENELFAEASQIFSDMRFYGVEPSDHLYRSMVVTYCKMGFPETAHYLIDQA 769

Query: 114 SDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
            +KG     V     +++        + A+ +V  + ++  ++D + +N+LI     SG 
Sbjct: 770 EEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSLRQKCTMVDRKVWNALIHAYAASGC 829

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            E    ++ ++ + G    V +   L+ A+   G +DE + ++  L + G K   S    
Sbjct: 830 YERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISKSSITL 889

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++      G   +    +  MK  G+ P   +Y ++I +  +G R  +    + EM    
Sbjct: 890 MLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAMVSEMEVAX 949

Query: 293 LTP 295
             P
Sbjct: 950 FKP 952



 Score = 41.2 bits (95), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 29/121 (23%), Positives = 52/121 (42%)

Query: 3    KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
            K + +MK   +  +  T+ L++  +   G  + A +V +           L Y+S++ A 
Sbjct: 1080 KLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKVLDNLKVEGLPLSTLPYSSVIDAY 1139

Query: 63   CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
             +    + A   +  M + G  PD R +   V A   S    EA   L+ + D GF+ P+
Sbjct: 1140 LKNGDHNVAIQKLMEMKKDGLEPDHRIWTCFVRAASLSQHTSEAIVLLKALRDTGFDLPI 1199

Query: 123  R 123
            R
Sbjct: 1200 R 1200


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 140/308 (45%), Gaps = 7/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G  + A  +F K   + N +  V  Y  ++   C+ +  + A  L+ R
Sbjct: 335 THTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIR 394

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G VP+  TY  L++  C +G    A E +  M  +GF P +   + ++ GL   G 
Sbjct: 395 MKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGR 454

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +++ + +K G   D  T+  LI   C+  + +  + ++  + K+GL  D+ TY +
Sbjct: 455 FPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNV 514

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +   ++E+ +L    V  G  P    Y  +I G  R G    A  FF +M+  G
Sbjct: 515 LIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYG 574

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
             P+   Y  LI+      +  EA      M + GL+P  ++R    VT   + C + D 
Sbjct: 575 CKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTR----VTLAYEYCKQGDS 630

Query: 316 AEKIELLE 323
           A  + +LE
Sbjct: 631 ATAMIILE 638



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 128/288 (44%), Gaps = 1/288 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +V   T +L+I  F + G V+ A   F K         ++ ++SL+  LC++     A+ 
Sbjct: 260 AVDNATCTLMISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFE 319

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++  M+RKG+ P+  T+  L++  C  G   +A + FL+ +    + P V     ++ G 
Sbjct: 320 MLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGY 379

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                L  A+ ++ +M +QG V +  T+  LI+  CK+G      E+   + K G   ++
Sbjct: 380 CKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNI 439

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  +I  + K G   EA++LL   ++ G       Y  +I    R+     A   FS 
Sbjct: 440 FTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSR 499

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           M   G  P+   Y +LI    R  +  E+     E   +GL P    +
Sbjct: 500 MFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETY 547



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 116/265 (43%), Gaps = 3/265 (1%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  E+     A  ++  M   G V   R    +++   + G +  A++   EM D+   P
Sbjct: 167 SFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVP 226

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 L+V G    G +    + +  MI++G+ +D  T   +I T  + G V      +
Sbjct: 227 DSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYF 286

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
               ++GL  ++  +  LI  + K G I +AF +L  +V  G KP    +  +I G+ ++
Sbjct: 287 KKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKK 346

Query: 241 GQFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
           G  + AF  F ++ +   + PN   YT +I    +  +   A   L+ M E GL P +  
Sbjct: 347 GWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNT 406

Query: 300 FDLVTDGLKNCGKHDLAEKIELLEV 324
           +  + DG  +C   +     EL+++
Sbjct: 407 YTCLIDG--HCKAGNFGRAYELMDL 429



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/278 (21%), Positives = 109/278 (39%), Gaps = 3/278 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++LM     + +  T + II+   K G    A ++  +          + Y  L+  
Sbjct: 424 YELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISE 483

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A A+  RM + G  PD  TY +L+  +C   K+ E+++  +E    G  P 
Sbjct: 484 FCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPT 543

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ G    G++ SA +  +KM   G   D  T+ +LI  +C   +++   ++Y 
Sbjct: 544 KETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYE 603

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   GL     T   L     K G    A  +L  L +   K +      +I+ +    
Sbjct: 604 TMIDNGLSPCEVTRVTLAYEYCKQGDSATAMIILERLEK---KLWIRTVNTLIRKLCSEK 660

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           +   A  FF ++  K    +R       T C    +F 
Sbjct: 661 KVGVAALFFHKLLDKDLNVDRITLAAFTTACYESNKFA 698


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 7/244 (2%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K+ LV  A  +F++ T       V+ YN+L++  C V     A  L+  M+ 
Sbjct: 202 STIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVL 261

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQ-------EFLQEMSDKGFNPPVRGRDLLVQGLL 133
           K   PD  TY ILV+A C  GK++EA+       + + EM D+G    V     L+ GL 
Sbjct: 262 KTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLC 321

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G+L+ A  + NKM  QG   ++ TF  L++ + K G ++   E++  +   G   +V 
Sbjct: 322 KNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQEVFQDLLTKGYHLNVY 381

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY ++I    K G+++EA  +L  + ++G  P    +  II  +F++ + D A     +M
Sbjct: 382 TYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKDENDKAEKLLRQM 441

Query: 254 KIKG 257
             +G
Sbjct: 442 IARG 445



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 7/311 (2%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S  TL+ +I+     G V  A+   +K  A   Q   + Y +L+  +C++     A  L+
Sbjct: 127 STVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLL 186

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           +++  +   PD   Y+ +++A C    + EA     EM+ KG +  V   + L+ G    
Sbjct: 187 KKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIV 246

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE-------FCVEMYYSVCKLGL 188
           G L+ A  ++N M+ +    D+ T+  L++ +CK G+V+       +  ++   +   G 
Sbjct: 247 GKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQ 306

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
            ADV TY  LI  + K G +D A  L + + + G +P    +  ++ G+++ G+  DA  
Sbjct: 307 PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLWKGGRLKDAQE 366

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F ++  KG+  N   Y ++I    + G   EA   L +M + G  P +  F+ +   L 
Sbjct: 367 VFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALF 426

Query: 309 NCGKHDLAEKI 319
              ++D AEK+
Sbjct: 427 KKDENDKAEKL 437



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 133/272 (48%), Gaps = 7/272 (2%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A+++  K      +  V++Y++++ ALC+ +L   AY L   M  KG   D  
Sbjct: 175 KIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVV 234

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ----- 143
           TY  L+  +C  GK++EA   L  M  K  NP V    +LV  L   G ++ AK+     
Sbjct: 235 TYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYV 294

Query: 144 --MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             ++++M  +G   D+ T++SLI+ +CK+G ++  + ++  +   G+  ++ T+ IL+  
Sbjct: 295 WDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDG 354

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + K G + +A  +  +L+  G+      Y  +I G  ++G  ++A    S+M+  G  PN
Sbjct: 355 LWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPN 414

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
              +  +I    +     +A   L +M   GL
Sbjct: 415 AFTFETIIIALFKKDENDKAEKLLRQMIARGL 446



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 141/329 (42%), Gaps = 43/329 (13%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV  FN+         ++ +N +L +  ++K  +   +L  R+  KG  PD  T  I
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMK-HYSTVSLSHRLELKGIQPDLFTLNI 98

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C  G++      L ++  +G+ P     + L++GL   G ++ A    +K++ QG
Sbjct: 99  LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 158

Query: 153 FVLDLETFNSLIETICKSGEVEFCVE---------------MYYSV----CKL------- 186
           F L+   + +LI  +CK G+    ++               MY ++    CK        
Sbjct: 159 FQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAY 218

Query: 187 ---------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
                    G+ ADV TY  LI      G + EA  LL+ +V     P    Y  ++  +
Sbjct: 219 GLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDAL 278

Query: 238 FRRGQFDDA-------FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            + G+  +A       +    EM+ +G P +   Y+ LI    + G    A     +M +
Sbjct: 279 CKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKD 338

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G+ P    F ++ DGL   G+   A+++
Sbjct: 339 QGIRPNMFTFTILLDGLWKGGRLKDAQEV 367



 Score = 58.2 bits (139), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 71/154 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+         T S +I+   K+G +D A+ +FNK      +  +  +  LL 
Sbjct: 294 VWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLD 353

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L +      A  + + ++ KG+  +  TY +++N  C  G + EA   L +M D G  P
Sbjct: 354 GLWKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIP 413

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
                + ++  L      + A++++ +MI +G +
Sbjct: 414 NAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 447


>gi|449523852|ref|XP_004168937.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Cucumis sativus]
          Length = 683

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 3/297 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y L++ P   T S +I+   K G ++ A    ++    +C   V+ Y+SL+    +  L 
Sbjct: 107 YQLNLVPNYITYSALIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLL 166

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
           H A+ ++R+M+ K  +P+  TYAIL++    +G    A +   +M   G    V   D  
Sbjct: 167 HDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAF 226

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V  +  +G +E A+++V KM   G   DL  + +L++   KSG+V   + +   +    +
Sbjct: 227 VNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNV 286

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D+ T+ +LI  + K G  D    +   + E G  P  + Y  ++ G F++G +  A  
Sbjct: 287 VFDIVTFNVLINCLFKLGKSDTE-SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 345

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            ++EMK +   PN     ++I      GR   A + L EM  MGL P S  + ++ +
Sbjct: 346 LWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLN 402



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 6/305 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    T + ++    K G   +A+E++N+  +       +  N ++  LCE   
Sbjct: 315 MREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGR 374

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE---MSDKGFNPPVRG 124
              A  +++ M+  G  P   TY IL+N    S K R A   LQ    + +         
Sbjct: 375 MENAIDILKEMVLMGLYPTSTTYRILLNI---SSKSRRADTILQTHELLVNMQLKVDKDV 431

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+  L   G    A  ++  M ++G + D  T+N+LI   C S  ++     Y ++ 
Sbjct: 432 YNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTML 491

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  D+ TY +L+  +SKAG+I EA  LL  + + G  P    Y  ++ G  +     
Sbjct: 492 SERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTK 551

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +    + EM IKG  P    Y MLI    + G+  +A   + EM   G++P    +D++ 
Sbjct: 552 ECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCTTYDILI 611

Query: 305 DGLKN 309
            G  N
Sbjct: 612 CGWCN 616



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 123/261 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ + S+L+ LC+         L+R M + G   +  +Y IL++A   +GK+ EA   L 
Sbjct: 10  VVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAEALMTLA 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G N  V    +L+ GL  +G ++ A+ +   + +   V +  T+++LI++ CK G
Sbjct: 70  CMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDSRCKLG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++       + + +     +V TY  LI    K G++ +AF++L  +V     P    YA
Sbjct: 130 DINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYA 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G F+ G  D A   +S+MK  G   N  +    +    R GR  EA   + +M   
Sbjct: 190 ILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASG 249

Query: 292 GLTPISRCFDLVTDGLKNCGK 312
           GL P    +  + DG    GK
Sbjct: 250 GLKPDLVNYTNLMDGFLKSGK 270



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 109/242 (45%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G  PD  T+  ++   C  GK+ E +  L+EM   G N       +L+  L  AG 
Sbjct: 1   MVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGK 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A   +  MI +G   D+     LI+ + KSG+++    ++ ++ +L L  +  TY  
Sbjct: 61  VAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSA 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI +  K G I+ A   LH + E    P    Y+ +I G  ++G   DAF    +M  K 
Sbjct: 121 LIDSRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKN 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN   Y +L+    + G    A +   +M + GL       D   + +K  G+ + AE
Sbjct: 181 AMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAE 240

Query: 318 KI 319
           ++
Sbjct: 241 EL 242



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 41/334 (12%)

Query: 2   WKTIEL-----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           W+ I L     MK   L  +   L   +    + G ++ A E+  K  +   +  ++ Y 
Sbjct: 200 WQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYT 259

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+    +      A  L + M  K  V D  T+ +L+N     GK  + +     M + 
Sbjct: 260 NLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGK-SDTESIYSAMREM 318

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P +   + ++ G    G   SA ++ N+M  +  + +  T N +I  +C++G +E  
Sbjct: 319 GLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENA 378

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKA------------------------------- 205
           +++   +  +GL    +TY+IL+   SK+                               
Sbjct: 379 IDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISN 438

Query: 206 ----GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               GM  +A  +L ++ E G     + Y  +I G         AF  +S M  +   P+
Sbjct: 439 LCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPD 498

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              Y +L+    + G   EA + L E+ + GL P
Sbjct: 499 IETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVP 532



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 31/129 (24%)

Query: 23  IIEEFGKHGLVDNAVE----VFNKCTAFNCQQCVLLY---------------NSLLFALC 63
           ++ E  K GLV NA      +   C   N ++C+ +Y               N L+    
Sbjct: 521 LLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFS 580

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM------------REAQEFLQ 111
           ++     A  L+  M  KG  P   TY IL+  WC+  KM             EA+    
Sbjct: 581 KMGKMKQAKELMNEMQTKGVSPTCTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFI 640

Query: 112 EMSDKGFNP 120
           EM+D+GF P
Sbjct: 641 EMNDRGFVP 649


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 138/291 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    +  Y+SL+   C       A  +   M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P+  TY  L+  +C + ++ E  E  +EMS +G          L+ G   A   
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+ +  +M+  G + D+ T++ L++ +C +G+VE  + ++  + +  +  D+ TY I+
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIM 507

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  +L   G KP    Y  ++ G  R+G  ++A   F EMK +G 
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGP 567

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            P+   Y  LI    R G    +A  + EM        +    LVT+ L +
Sbjct: 568 LPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNMLHD 618



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 4/296 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++    K G +D A+ +  K      +  V++YN+++ ALC  K  + A  L   M
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEM 282

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L+   C+ G+  +A   L +M ++  NP V     L+   +  G L
Sbjct: 283 DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 342

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MIK+    D+ T++SLI   C    ++    M+  +       +V TY  L
Sbjct: 343 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +DE   L   + + G       Y  +I G F+  + D+A   F +M   G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462

Query: 259 PPNRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   Y++L+  +C  G   VE A  + E +    + P    ++++ +G+   GK
Sbjct: 463 LPDIMTYSILLDGLCNNGK--VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGK 516



 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 147/334 (44%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+    +  V++A+ +F +      +  V+ YNSL+  LC    +  A  L+  MI + 
Sbjct: 262 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 321

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 322 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 381

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            M   MI +    ++ T+N+LI+  CK+  V+  +E++  + + GL  +  TY  LI   
Sbjct: 382 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGF 441

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPF---------------------------------PSL 229
            +A   D A  +   +V DG  P                                  P +
Sbjct: 442 FQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDI 501

Query: 230 YA--PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           Y    +I+GM + G+ +D +  F  + +KG  PN   YT +++   R G   EA     E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S  ++ L+   L++  K   AE I 
Sbjct: 562 MKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIR 595



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 130/287 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+AV +F           ++ ++ LL A+ ++  F    +L  +M   G   +  TY+I
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N +C   ++  A   L +M   G+ P +   + L+ G  +   +  A  +V +M++ G
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  TFN+LI  + +       V +   +   G   D+ TY I++  + K G ID A 
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + +   +P   +Y  II  +      +DA   F+EM  KG  PN   Y  LI   
Sbjct: 242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 348



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 133/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I    +H     AV + ++     CQ  ++ Y  ++  LC+      A +L+++M
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +    P    Y  +++A C+   + +A     EM +KG  P V   + L++ L N G  
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TF++LI+   K G++    ++Y  + K  +  D+ TY  L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA  +   ++     P    Y  +IKG  +  + D+    F EM  +G 
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             N   YT LI    +      A     +M   G+ P    + ++ DGL N GK + A
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 6/258 (2%)

Query: 3   KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K +E  K Y+     S+ P   T S +I  F  H  +D A  +F    + +C   V+ YN
Sbjct: 341 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYN 400

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C+ K       L R M ++G V +  TY  L++ +  + +   AQ   ++M   
Sbjct: 401 TLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD 460

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P +    +L+ GL N G +E+A  +   + +     D+ T+N +IE +CK+G+VE  
Sbjct: 461 GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDG 520

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +++ S+   G+  +V TY  ++    + G+ +EA  L   + E+G  P    Y  +I+ 
Sbjct: 521 WDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580

Query: 237 MFRRGQFDDAFCFFSEMK 254
             R G    +     EM+
Sbjct: 581 HLRDGDKAASAELIREMR 598



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 121/289 (41%), Gaps = 2/289 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K   L   P   TL+ ++  F     + +AV +  +      Q     +N+L+  L  
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A AL+ RM+ KG  PD  TY I+VN  C  G +  A   L++M      P V  
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L N   +  A  +  +M  +G   ++ T+NSLI  +C  G       +   + 
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +  +V T+  LI A  K G + EA +L   +++    P    Y+ +I G     + D
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           +A   F  M  K   PN   Y  LI    +  R  E      EM++ GL
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 112/241 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+   C       A A++ +M++ G+ PD  T   L+N +C   ++ +A   + +M 
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P     + L+ GL        A  +V++M+ +G   DL T+  ++  +CK G+++
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + +  +   V  Y  +I A+     +++A  L   +   G +P    Y  +I
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           + +   G++ DA    S+M  +   PN   ++ LI    + G+ VEA     EM +  + 
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358

Query: 295 P 295
           P
Sbjct: 359 P 359



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 3/325 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +S +  T S++I  F +   +  A+ V  K      +  ++  NSLL   C  
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHG 164

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A +L+ +M+  G+ PD  T+  L++      +  EA   +  M  KG  P +   
Sbjct: 165 NRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            ++V GL   G ++ A  ++ KM +      +  +N++I+ +C    V   + ++  +  
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  LI  +   G   +A RLL +++E    P    ++ +I    + G+  +
Sbjct: 285 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 344

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   + EM  +   P+   Y+ LI       R  EA +    M      P    ++ +  
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404

Query: 306 GLKNCGKHDLAEKIELL-EVSLRSV 329
           G   C    + E +EL  E+S R +
Sbjct: 405 GF--CKAKRVDEGMELFREMSQRGL 427



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%)

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           LN   L+ A  +   M+K      +  F+ L+  I K  + +  + +   +  LG+  ++
Sbjct: 57  LNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNL 116

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY ILI    +   +  A  +L  +++ G++P       ++ G     +  DA     +
Sbjct: 117 YTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQ 176

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M   G+ P+   +  LI    R  R  EA   +  M   G  P    + +V +GL   G 
Sbjct: 177 MVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGD 236

Query: 313 HDLA 316
            DLA
Sbjct: 237 IDLA 240


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 136/298 (45%), Gaps = 8/298 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG----AYALIRRM 78
           +I+  GK G VD A  +F K          ++Y SL+         HG     + + + +
Sbjct: 464 LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF----FIHGRKEDGHKIFKEL 519

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR+G  PD       ++    +G++ + +   +++   GF P VR   +L+ GL  AG  
Sbjct: 520 IRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA 579

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + + M +QGF LD   +N++++  CKSG+V    E+   + +  +   V+TY  +
Sbjct: 580 RETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAI 639

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  ++K   +DEA+ L       G +    LY+ +I G  + G+ D+A+    EM  KG 
Sbjct: 640 VDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGL 699

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   +  L+    +     EA      M EM   P +  + ++ +GL    K++ A
Sbjct: 700 TPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 757



 Score =  114 bits (284), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 133/284 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+    +F    ++     V  Y+ L+  L +         +   M ++GF  D R
Sbjct: 540 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 599

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  +V+ +C SGK+ +A E L+EM +K   P V     +V GL     L+ A  +  + 
Sbjct: 600 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 659

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G  L++  ++SLI+   K G ++    +   + K GL  +V T+  L+ A+ KA  I
Sbjct: 660 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 719

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA     ++ E    P    Y+ +I G+ R  +++ AF F+ +M+ +G  PN   YT +
Sbjct: 720 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTM 779

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I+   + G   +A +        G  P +  F+ + +G+ N  +
Sbjct: 780 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANR 823



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 5/313 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L     + + +I    K G +  A E+F +  A     C   YN+++  
Sbjct: 269 WKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 328

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ--EMSDKGFN 119
                 F  AY L+ R+  +G +P   ++  ++      GK R+  E L   E+  K   
Sbjct: 329 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL---GKKRKVDEALSLFEVMKKDAE 385

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P     ++++  L   G +E A +++++M       +L T N +++ +CK+ ++E   ++
Sbjct: 386 PNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKI 445

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           + S  + G   D  TY  LI  + K G +DEA+RL   +++ GH   P +Y  +I+  F 
Sbjct: 446 FESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFI 505

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+ +D    F E+  +G  P+  +    +    + G   +      ++   G  P  R 
Sbjct: 506 HGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRS 565

Query: 300 FDLVTDGLKNCGK 312
           + ++  GL   G+
Sbjct: 566 YSILIHGLTKAGQ 578



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 146/306 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+  +L  +  T++++++   K   ++ A ++F   +   C    + Y SL+  
Sbjct: 408 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 467

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      AY L  +M+  G   +   Y  L+  +   G+  +  +  +E+  +G  P 
Sbjct: 468 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   +  +  +  AG +E  + +   +   GF+ D+ +++ LI  + K+G+      +++
Sbjct: 528 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 587

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ + G   D   Y  ++    K+G + +A+ +L  + E   +P  + Y  I+ G+ +  
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 647

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A+  F E K KG   N  +Y+ LI   G+ GR  EA   L EM + GLTP    ++
Sbjct: 648 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 707

Query: 302 LVTDGL 307
            + D L
Sbjct: 708 SLLDAL 713



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  +G  G  ++A ++  +     C   V+ +NS+L  L + +    A +L   M +K 
Sbjct: 325 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKD 383

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY I+++  C  G++ EA   L EM      P +   +++V  L  A  LE A 
Sbjct: 384 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 443

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++     ++G   D  T+ SLI+ + K G+V+    ++  +   G  A+   Y  LI   
Sbjct: 444 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 503

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G  ++  ++   L+  G KP  +L    +  +F+ G+ +     F +++  G  P+ 
Sbjct: 504 FIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 563

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEKIE 320
             Y++LI    + G+  E +N    M + G    +R ++ V DG    GK H   E +E
Sbjct: 564 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 622



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 133/325 (40%), Gaps = 5/325 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E ++ Y      ++ S++I    K G       +F+             YN+++   C+ 
Sbjct: 552 EDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKS 611

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              H AY ++  M  K   P   TY  +V+      ++ EA    +E   KG    V   
Sbjct: 612 GKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLY 671

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +M+K+G   ++ T+NSL++ + K+ E+   +  + S+ +
Sbjct: 672 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKE 731

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +    +  TY ILI  + +    ++AF    ++ + G  P    Y  +I G+ + G   D
Sbjct: 732 MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 791

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLVT 304
           A+  F   K  G  P+   +  LI       R +EA     E    G    I  C  L  
Sbjct: 792 AYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISL-- 849

Query: 305 DGLKNCGKHDLAEKIELLEVSLRSV 329
             L    K +  E+  ++   LR +
Sbjct: 850 --LDALNKSECLEQAAIVGAVLREI 872



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+ AL E +    A  L+R+M   G+      +  LV A    G++ +A   + E+ 
Sbjct: 182 YTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVK 241

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P +   ++ +     AG ++ A +  +++  QG   D  ++ S+I  +CK+G + 
Sbjct: 242 GSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLG 301

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  +           Y  +I     AG  ++A++LL  L E G  P    +  I+
Sbjct: 302 EAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 361

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + ++ + D+A   F  MK K   PN   Y ++I M   GGR  EA   L EM    L 
Sbjct: 362 TCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLF 420

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P     +++ D L  C    L E  ++ E
Sbjct: 421 PNLLTVNIMVDRL--CKARKLEEAYKIFE 447



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 117/262 (44%), Gaps = 1/262 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L  AL   +    A   +  M R  F P    Y +L+ A   + +   A E L++M + G
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           +   V     LV+ L   G +  A  +V+++       D+  +N  I+   K+G V+   
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 269

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           + ++ +   GL  D  +Y  +I  + KAG + EA  L   +  +   P    Y  +I G 
Sbjct: 270 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 329

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G+F+DA+     ++ +G  P+   +  ++T  G+  R V+ A  L E+ +    P S
Sbjct: 330 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGK-KRKVDEALSLFEVMKKDAEPNS 388

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             ++++ D L   G+ + A +I
Sbjct: 389 STYNIIIDMLCLGGRVEEAYRI 410



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 2/234 (0%)

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           A L  A   + ++ +A   +  M    F P      +L+  L  A   E A +++ +M +
Sbjct: 148 AHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQE 207

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G+ + +  F +L+  + + G+V   + +   V    L  D+  Y + I    KAG +D 
Sbjct: 208 VGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 267

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A++  H L   G KP    Y  +I  + + G+  +A   F++M+ +   P    Y  +I 
Sbjct: 268 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 327

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             G  GRF +A   L  + E G  P    F+ +   L    K D  E + L EV
Sbjct: 328 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD--EALSLFEV 379



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 96/215 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK   +  +  T   I++   K   +D A  +F +  +   +  V+LY+SL+  
Sbjct: 618 YEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDG 677

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++A   + ++ EA    Q M +    P 
Sbjct: 678 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPN 737

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A      M KQG V ++ T+ ++I  + K G +     ++ 
Sbjct: 738 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFE 797

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D +++  LI  +S A    EA+++  
Sbjct: 798 RFKANGGIPDAASFNALIEGMSNANRAMEAYQVFE 832



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 95/213 (44%)

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
           ++ L+EM+  G+  P +    L   L+ A  L+ A   V  M +  F      +  LI  
Sbjct: 129 EKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGA 188

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           + ++   E  +E+   + ++G    V  +  L+ A+++ G + +A  L+  +     +P 
Sbjct: 189 LAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPD 248

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             LY   I    + G  D A+ FF E+K +G  P+   YT +I +  + GR  EA     
Sbjct: 249 IVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFA 308

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +M      P +  ++ +  G  + G+ + A K+
Sbjct: 309 QMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKL 341



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 120/286 (41%), Gaps = 1/286 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A+E+  +      +  V L+ +L+ AL        A AL+  +      PD   Y + 
Sbjct: 196 ERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVC 255

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++ +  +G +  A +F  E+  +G  P       ++  L  AG L  A+++  +M  +  
Sbjct: 256 IDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 315

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           V     +N++I     +G  E   ++   + + G    V ++  ++  + K   +DEA  
Sbjct: 316 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS 375

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   + +D  +P  S Y  II  +   G+ ++A+    EM+     PN     +++    
Sbjct: 376 LFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC 434

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +  +  EA       ++ G  P    +  + DGL   G+ D A ++
Sbjct: 435 KARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRL 480



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 76/166 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L+ +  T + +++   K   ++ A+  F       C      Y+ L+  LC 
Sbjct: 691 LEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCR 750

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V+ ++ A+   + M ++G VP+  TY  +++     G + +A    +     G  P    
Sbjct: 751 VQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAAS 810

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            + L++G+ NA     A Q+  +   +G  +++++  SL++ + KS
Sbjct: 811 FNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKS 856



 Score = 51.2 bits (121), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 71/158 (44%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L + ++++ +M   G+ L  +    L   + ++  ++  V     + +L      S Y +
Sbjct: 125 LAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTV 184

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+++A   + A  LL  + E G++    L+  +++ + R GQ  DA     E+K   
Sbjct: 185 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 244

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+  +Y + I   G+ G    A  +  E+   GL P
Sbjct: 245 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKP 282


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 2/290 (0%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           L D AV +     +   +  V+ Y +L+  LC+      A  L+  M   G  P+   Y+
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L+  +C SG+  +  +   EMS+KG  P V     L+  L   G  + A  +++ M+++
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 249

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   ++ T+N LI  +CK G V+  + +   + + G+  DV TY  LI  +S    +DEA
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309

Query: 212 FRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             LL  +V   +  KP    +  +I+G+   G+   AF   + M+  G   N   Y +LI
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLI 369

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               R  +  +A   + EMT +GL P S  + ++  G     + D AE +
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 41/357 (11%)

Query: 3   KTIELMKPYNLS-VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K +ELM     S + P  +  S +++ + K G  ++  +VF + +    +  V++Y  L+
Sbjct: 168 KAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI 227

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            +LC+V     A+ ++  M+R+G  P+  TY +L+N  C  G ++EA   L++MS+KG  
Sbjct: 228 DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVA 287

Query: 120 PP---------------------------VRGRDL----------LVQGLLNAGYLESAK 142
           P                            VRG+++          ++QGL + G +  A 
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAF 347

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+   M + G +++L T+N LI  + +  +V   +E+   +  LGL  D  TY ILI   
Sbjct: 348 QVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGF 407

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +D A  LL  + + G +P    Y P++  M  +G  + A   F+EM     P + 
Sbjct: 408 CKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDV 466

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y+ +I    + G    A   L  + + GLTP +  + +V +     G  + A  +
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGV 523



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 4/272 (1%)

Query: 1   MWKTIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           MW   E+++  N+ V P   T + +I+     G +  A +V        C   ++ YN L
Sbjct: 310 MWLLEEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLL 368

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  L  V     A  L+  M   G  PD  TY+IL+  +C   ++  A++ L  M D+G 
Sbjct: 369 IGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGI 428

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +     L+  +   G +E A+ + N+M    F LD+  ++++I   CK+G+++   E
Sbjct: 429 EPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  S+   GL  D  TY I+I   +K+G ++ A  +L  +   G  P  +++  +I+G  
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            +G+ +       EM  K    +  + + L T
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTLST 579



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+   + Y  L+ ALC  +L   A  L+R M   G   D  TY  L+   C + ++ +A 
Sbjct: 111 CRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E + EM + G  P V     L+QG   +G  E   ++  +M ++G   D+  +  LI+++
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+ +    +   + + GL  +V TY +LI  + K G + EA  +L  + E G  P  
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH---PPNRPVYTMLITMCGRGGRFVEAANY 284
             Y  +IKG+    + D+A     EM ++G     PN   +  +I      GR  +A   
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEEM-VRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              M E G       ++L+  GL     H + + +EL++
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRV--HKVRKAMELMD 386



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 5/263 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI---RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           YN++L ALC       A AL+R M         P+  +Y +L+ A C+     +A   L+
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G    V     L++GL +A  ++ A +++ +M + G   ++  ++SL++  CKSG
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E   +++  + + G+  DV  Y  LI ++ K G   +A  ++  +V  G +P    Y 
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  M + G   +A     +M  KG  P+   Y  LI          EA   L EM   
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319

Query: 292 G--LTPISRCFDLVTDGLKNCGK 312
              + P    F+ V  GL + G+
Sbjct: 320 KNIVKPNVVTFNSVIQGLCDIGR 342



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 1/144 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G+++ A  +FN+    N    V+ Y++++   C+      A  L++ ++ +G  PD  
Sbjct: 444 EQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAV 502

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+I++N +  SG M  A   L++M+  GF P V   D L+QG    G +    +++ +M
Sbjct: 503 TYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562

Query: 149 IKQGFVLDLETFNSLIETICKSGE 172
           I +   LD +  ++L  ++  S E
Sbjct: 563 ITKNIALDSKIISTLSTSLVASNE 586


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 133/273 (48%), Gaps = 4/273 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+++ +L+ ALC+  +   A+ ++  MI++G  PD  TY  L++  C   +M EA +   
Sbjct: 284 VVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFD 343

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG  P V     L+ G      ++ A  +  +M ++  V ++ T+N+LI  +C  G
Sbjct: 344 TMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVG 403

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +   + +++ +   G   D+ TY+IL+  + K   +D+A  +L  +      P    Y 
Sbjct: 404 RLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYN 463

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I GM R G+ + A   FS +  KG  P+   YT++I      G   EA     EM   
Sbjct: 464 IVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTD 523

Query: 292 GLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
           G +P    ++L+T G L+N   ++    I+LL+
Sbjct: 524 GCSPDDCTYNLITRGFLRN---NETLSAIQLLQ 553



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A +VF+      C   V+ Y++L+   C+++    A  L   M ++  VP+  TY  
Sbjct: 335 MDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C  G++R+A     EM   G  P +    +L+  L    +L+ A  M+  +    
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D++++N +I+ +C+ GE+E   +++ S+   GL  DV TY I+I  +   G++ EA 
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEAT 514

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L   +  DG  P    Y  I +G  R  +   A     EM  +G   +    T+++ M 
Sbjct: 515 KLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEML 574

Query: 273 GRGG 276
              G
Sbjct: 575 SDDG 578



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 5/305 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +++   K G+V  A +V +       +  V+ Y +L+   C       A  +   M+R
Sbjct: 288 TTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVR 347

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P+  +Y+ L+N +C   ++ +A    +EM  +   P +   + L+ GL + G L  
Sbjct: 348 KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRD 407

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  + ++M+  G + DL T+  L++ +CK+  ++  + M  ++    L  D+ +Y I+I 
Sbjct: 408 AIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVID 467

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + + G ++ A  L  +L   G  P    Y  +I G+  +G   +A   F EM   G  P
Sbjct: 468 GMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSP 527

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT-----DGLKNCGKHDL 315
           +   Y ++     R    + A   L EM   G +  +    L+      DGL    K  L
Sbjct: 528 DDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQIL 587

Query: 316 AEKIE 320
            E ++
Sbjct: 588 HEFVQ 592



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 7/300 (2%)

Query: 7   LMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K + L   P T   + +I      G +  A+ +F+K      Q   + Y +L+  LC+
Sbjct: 132 LAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCK 191

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A  L+R M++K   P+  TY  +++      ++ EA     EM  KG +P V  
Sbjct: 192 VGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVST 251

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++ GL      +    ++N+M+    + ++  F +L++ +CK G V    ++   + 
Sbjct: 252 YNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMI 311

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  DV TY  L+        +DEA ++   +V  G  P    Y+ +I G  +  + D
Sbjct: 312 QRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRID 371

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F EM  +   PN   Y  LI      GR  +A     EM   G  P     DLVT
Sbjct: 372 KAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIP-----DLVT 426



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 139/322 (43%), Gaps = 13/322 (4%)

Query: 4   TIELMKPYN--LSVSPQ-----------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ 50
           +I  MK Y+  LS+S Q           TL+++I  F     VD    V  K      Q 
Sbjct: 83  SIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQP 142

Query: 51  CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
               + +L+  LC       A  L  +M+ +GF P+  TY  L++  C  G  R A   L
Sbjct: 143 DTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLL 202

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           + M  K   P V   + ++  L     +  A  + ++MI +G   ++ T+NS+I  +CK 
Sbjct: 203 RSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKF 262

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
            E +    +   +    +  +V  +  L+ A+ K GM+  A  ++  +++ G +P    Y
Sbjct: 263 SEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTY 322

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             ++ G   R + D+A   F  M  KG  PN   Y+ LI    +  R  +A     EM +
Sbjct: 323 TALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQ 382

Query: 291 MGLTPISRCFDLVTDGLKNCGK 312
             L P    ++ +  GL + G+
Sbjct: 383 RELVPNIVTYNTLIHGLCHVGR 404



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 130/298 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+ +       NC+  V+ YN+++  L + +  + A  +   M
Sbjct: 181 TYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEM 240

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I KG  P+  TY  +++  C   + +     + EM D    P V     LV  L   G +
Sbjct: 241 IAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMV 300

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V+ MI++G   D+ T+ +L++  C   E++   +++ ++ + G   +V +Y  L
Sbjct: 301 TIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTL 360

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   ID+A  L   + +    P    Y  +I G+   G+  DA   F EM   G 
Sbjct: 361 INGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQ 420

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   Y +L+    +     +A   L  +    L P  + +++V DG+   G+ + A
Sbjct: 421 IPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAA 478



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 132/295 (44%), Gaps = 2/295 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+  FN+         V+ +  +L ++  +K +    +L ++M   G   D  T AI
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N++C   ++      L ++   G  P       L++GL   G +  A  + +KM+ +G
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEG 174

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  +  T+ +LI  +CK G     + +  S+ +     +V TY  +I  + K   ++EA 
Sbjct: 175 FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEAL 234

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            +   ++  G  P  S Y  II G+ +  ++       +EM      PN  ++T L+   
Sbjct: 235 NIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDAL 294

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
            + G    A + +  M + G+ P    +  + DG  +C + ++ E  ++ +  +R
Sbjct: 295 CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDG--HCLRSEMDEADKVFDTMVR 347



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 94/202 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I      G + +A+ +F++  A      ++ Y  LL  LC+ +    A A+++ +
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAI 450

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD ++Y I+++  C  G++  A +    +S KG +P V    +++ GL   G L
Sbjct: 451 EGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLL 510

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M   G   D  T+N +     ++ E    +++   +   G  AD ST  ++
Sbjct: 511 AEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLI 570

Query: 199 IPAVSKAGMIDEAFRLLHNLVE 220
           +  +S  G+     ++LH  V+
Sbjct: 571 VEMLSDDGLDQSVKQILHEFVQ 592



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 3/150 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M K IE     NL+   Q+ +++I+   + G ++ A ++F+  ++      V  Y  ++ 
Sbjct: 446 MLKAIE---GSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMIN 502

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC   L   A  L R M   G  PD  TY ++   +  + +   A + LQEM  +GF+ 
Sbjct: 503 GLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSA 562

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
                 L+V+ L + G  +S KQ++++ ++
Sbjct: 563 DASTITLIVEMLSDDGLDQSVKQILHEFVQ 592



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 72/174 (41%)

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           N   ++ A    N+M+       +  F  ++ +I         + +   +  LG+ +DV 
Sbjct: 51  NFNTIDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVY 110

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T  I+I +      +D  F +L  + + GH+P  + +  +I+G+   G+  +A   F +M
Sbjct: 111 TLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKM 170

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             +G  PN   Y  LI    + G    A   L  M +    P    ++ + D L
Sbjct: 171 VGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCL 224


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 147/315 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+   +  +  T +++IE + +   ++ A ++F++      +  V +Y S++   C+
Sbjct: 250 LSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCK 309

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L   M  +  VP+  TY  L+N  C +G+M+ A+  + +M  KG +     
Sbjct: 310 FGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVI 369

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G ++ A ++ N M ++GF +D  T N +    C+S   E    +  ++ 
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V ++ ILI    K     EA RL   + + G  P    Y   I+   ++G+ +
Sbjct: 430 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A+   +EM+ +G  P+   YT LI      G    A     EM ++GL      + ++ 
Sbjct: 490 EAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 549

Query: 305 DGLKNCGKHDLAEKI 319
            GL   G+ D A K+
Sbjct: 550 SGLSKDGRADEAFKL 564



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           +++N+L+   C+  +   A  L   M +KGF  D  T  I+ + +C S +  EA+  L  
Sbjct: 368 VIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLT 427

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M ++G  P V    +L+           A+++   M K+G    + T+N+ IE  CK G+
Sbjct: 428 MEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 487

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +E   ++   + + GL  D  TY  LI     +G +D A  L + + + G       Y  
Sbjct: 488 MEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTV 547

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           II G+ + G+ D+AF  + EM  +G  P+  +Y+ LI    + G  V     +V+  E
Sbjct: 548 IISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLENVVDRIE 605



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 134/333 (40%), Gaps = 35/333 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +++   K G V  A  + ++      +  V+ YN+LL    E+K   G   ++  M
Sbjct: 194 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 253

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     +  TY +L+  +  S K+ EA++   EM  KG  P V     ++      G +
Sbjct: 254 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 313

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M ++  V +  T+ +LI   CK+GE++    M   +   G+  +   +  L
Sbjct: 314 KRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTL 373

Query: 199 IPAVSKAGMIDEAF-----------------------------------RLLHNLVEDGH 223
           +    K GMIDEA                                    RLL  + E G 
Sbjct: 374 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGV 433

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    ++ +I    +   F +A   F  M+ KG  P+   Y   I    + G+  EA  
Sbjct: 434 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYK 493

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            + EM E GL P +  +  + DG +  G  D A
Sbjct: 494 LINEMQERGLMPDTYTYTSLIDGERASGNVDRA 526



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 3/280 (1%)

Query: 46  FNCQQCVLLYNSLLFAL-CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
           FN    V  +  +LF +  + ++F  +  +     +KGF  D+R+    + A   SG M 
Sbjct: 115 FNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNME 174

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
              EFL++M D G    V     +V GL   G +  AK ++++++ +GF   + T+N+L+
Sbjct: 175 LCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLL 234

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
               +  +V    E+   + K  +  +V+TY +LI   S++  I+EA +L   +++ G +
Sbjct: 235 NGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE 294

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P   +Y  II    + G    AF  F EM  +   PN   Y  LI    + G    A   
Sbjct: 295 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 354

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           + +M   G+      F+ + DG   C K  + E + L  +
Sbjct: 355 VNDMQSKGVDVNRVIFNTLMDGY--CKKGMIDEALRLQNI 392



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   + S++I+ + K      A  +F           V+ YN+ +   C+      AY
Sbjct: 433 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 492

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            LI  M  +G +PD  TY  L++   +SG +  A E   EM   G N  V    +++ GL
Sbjct: 493 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 552

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              G  + A ++ ++M K+G V D   ++SLI ++ K G
Sbjct: 553 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 591


>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
 gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
          Length = 487

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 145/323 (44%), Gaps = 5/323 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  + +M+   ++ + +T S+I+ ++ +    D AV  FN    +     +  +NSLL 
Sbjct: 123 MWDVVAVMRKEGVA-NVETFSIIMRKYARAQKFDEAVYTFNIMERYGVAHNLAAFNSLLG 181

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ K    A  +  +M  + F PD +TY+IL+  W  +  + + +E   +M   G  P
Sbjct: 182 ALCKSKNVRKAQEIFDKMNNR-FSPDAKTYSILLEGWGRAPNLPKMREVYSDMLAAGCQP 240

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++V  L   G +E A  +V  M  +G       ++ L+ T      +E  V  +
Sbjct: 241 DIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATF 300

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  DV  Y  L+ A  K    D AFR++ ++   G  P    +  I+  +   
Sbjct: 301 LDMEKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISL 360

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A+  F  M IK   P+   YTM+I M     +   A      M      P    F
Sbjct: 361 GKDDEAYRVFRNM-IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTF 419

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ +GL  C K ++++   LLE
Sbjct: 420 SVLINGL--CDKGEVSQACVLLE 440



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 112/242 (46%), Gaps = 1/242 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K G V+ AV V    ++  CQ    +Y+ L+           A A    M
Sbjct: 244 TYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDM 303

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G VPD   Y  LV A+C   K   A   + +M   G +P  R  ++++  L++ G  
Sbjct: 304 EKDGIVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILNTLISLGKD 363

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   MIK+    D +T+  +I+  C++ ++E  ++++  +        + T+ +L
Sbjct: 364 DEAYRVFRNMIKR-CKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVL 422

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + +A  LL +++E G +P  S +  + + + + G+ D       +MK+   
Sbjct: 423 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKMLIQ 482

Query: 259 PP 260
            P
Sbjct: 483 EP 484



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+ + +S + +T ++I+      G  D A  VF       C+     Y  ++  
Sbjct: 332 FRVMDDMEGHGISPNSRTWNIILNTLISLGKDDEAYRVFRNMIK-RCKPDSDTYTMMIKM 390

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  + + M  K F+P   T+++L+N  C  G++ +A   L++M +KG  PP
Sbjct: 391 FCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPP 450

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L Q LL  G  +    +V KM
Sbjct: 451 GSTFGKLRQLLLKEGRKDVLDFLVEKM 477


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 149/312 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+   +  +  T +L+IE +G  G +  A +VF K      +  + ++ S++   C+
Sbjct: 273 LRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCK 332

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A+AL   +  +G V +  TY  L++  C+SG++  A+  + EM  +G +  +  
Sbjct: 333 LGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVI 392

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G ++ A +M + M K+GF  D+ T+N++   +CK    E      +++ 
Sbjct: 393 FNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMV 452

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +  ++ I+I    K G + EA R+  ++ + G KP    Y  +I G  ++G+  
Sbjct: 453 EKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLK 512

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A+    EM+  G   +   YT L+      G+  EA   L E+   GL      +  + 
Sbjct: 513 EAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAII 572

Query: 305 DGLKNCGKHDLA 316
            GL   G+ + A
Sbjct: 573 SGLSKEGRSEEA 584



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 148/305 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + + V+  +++++I+   K G V+ A ++  + T    +  V+ YN+L+ A  ++  
Sbjct: 206 MVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMD 265

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F G   ++R M     V +  TY +L+  + SSGK+ EA++  ++M ++G    +     
Sbjct: 266 FEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTS 325

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++      G ++ A  + +++ ++G V +  T+ +LI   C SG+++    +   +   G
Sbjct: 326 IISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQG 385

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  ++  +  LI    K GMIDEA R+   + + G +     Y  I  G+ +  + ++A 
Sbjct: 386 LDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAK 445

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +   M  KG  PN   +T++I +  + G  VEA     +M + G  P    ++ + DG 
Sbjct: 446 RWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGY 505

Query: 308 KNCGK 312
              GK
Sbjct: 506 SKKGK 510



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 113/232 (48%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L ++    + +I  + K G++D A+ + +       +  +  YN++   LC++  
Sbjct: 381 MQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNR 440

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  M+ KG  P+  ++ I+++  C  G + EA+   Q+M  KG  P V   + 
Sbjct: 441 HEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNT 500

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L+ A ++ ++M   G   D+ T+ +L+   C  G+VE  + +   VC+ G
Sbjct: 501 LIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKG 560

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           L   + TY  +I  +SK G  +EAFRL   ++  G  P   +Y  ++  + +
Sbjct: 561 LAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 120/257 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L  +  T   +I      G +D A  + N+  +      ++++N+L+   C+  +   A 
Sbjct: 351 LVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEAL 410

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M +KGF  D  TY  +    C   +  EA+ +L  M +KG +P      +++   
Sbjct: 411 RMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIH 470

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L  A+++   M K+G   ++ T+N+LI+   K G+++    +   +  +G+ +D+
Sbjct: 471 CKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDI 530

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  L+      G ++EA  LL+ +   G       Y  II G+ + G+ ++AF  + E
Sbjct: 531 YTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDE 590

Query: 253 MKIKGHPPNRPVYTMLI 269
           M   G  P+  VYT L+
Sbjct: 591 MMAAGLTPDDRVYTSLV 607



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 124/326 (38%), Gaps = 70/326 (21%)

Query: 40  FNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC- 98
           F K   F     V     ++  LC+      A  L+  M  KG  P+  TY  LVNA+  
Sbjct: 203 FKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIK 262

Query: 99  ----------------------------------SSGKMREAQEFLQEMSDKGFNPPV-- 122
                                             SSGK+ EA++  ++M ++G    +  
Sbjct: 263 IMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHV 322

Query: 123 --------------------------RG-------RDLLVQGLLNAGYLESAKQMVNKMI 149
                                     RG          L+ G  N+G L++A+ +VN+M 
Sbjct: 323 FTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQ 382

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            QG  ++L  FN+LI   CK G ++  + M   + K G   D+ TY  +   + K    +
Sbjct: 383 SQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHE 442

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA R L  +VE G  P    +  +I    + G   +A   F +MK KG  PN   Y  LI
Sbjct: 443 EAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLI 502

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTP 295
               + G+  EA     EM  +G+T 
Sbjct: 503 DGYSKKGKLKEAYRLKDEMESIGMTS 528



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 99/230 (43%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           +  I+++  C  G++  A++ + EM+ KG  P V   + LV   +     E   +M+  M
Sbjct: 217 SMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLM 276

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                V +  T+  LIE    SG++    +++  + + G+ AD+  +  +I    K G +
Sbjct: 277 EMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNM 336

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             AF L   L E G       Y  +I G    GQ D A    +EM+ +G   N  ++  L
Sbjct: 337 KRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTL 396

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           I    + G   EA      M + G       ++ +  GL    +H+ A++
Sbjct: 397 INGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKR 446



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 2/158 (1%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  +S  ++I+   K G +  A  VF        +  V+ YN+L+    +      AY
Sbjct: 456 VDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAY 515

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   M   G   D  TY  LV+  C  GK+ EA   L E+  KG    +     ++ GL
Sbjct: 516 RLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGL 575

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
              G  E A ++ ++M+  G   D   + SL+  + K+
Sbjct: 576 SKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHKT 613


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 137/302 (45%), Gaps = 8/302 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG----AYAL 74
           T   +I+  GK G VD A  +F K          ++Y SL+         HG     + +
Sbjct: 326 TYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF----FIHGRKEDGHKV 381

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
            + +IR+G  PD       ++    +G++ + +   +++   GF P VR   +L+ GL  
Sbjct: 382 FKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTK 441

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           AG       + + M +QGF LD   +N++++  CKSG+V    E+   + +  +   V+T
Sbjct: 442 AGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVAT 501

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  ++  ++K   +DEA+ L       G +    LY+ +I G  + G+ D+A+    EM 
Sbjct: 502 YGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMM 561

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
            KG  PN   +  L+    +     EA      M EM   P +  + ++ +GL    K++
Sbjct: 562 KKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYN 621

Query: 315 LA 316
            A
Sbjct: 622 KA 623



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 140/300 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+    +F    ++     V  Y+ L+  L +         +   M ++GF  D R
Sbjct: 406 KAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR 465

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  +V+ +C SGK+ +A E L+EM +K   P V     +V GL     L+ A  +  + 
Sbjct: 466 AYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEA 525

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G  L++  ++SLI+   K G ++    +   + K GL  +V T+  L+ A+ KA  I
Sbjct: 526 KSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEI 585

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA     ++ E    P    Y+ +I G+ R  +++ AF F+ +M+ +G  PN   YT +
Sbjct: 586 NEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTM 645

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           I+   + G   +A +        G  P +  F+ + +G+ N  +   A +  + ++S  S
Sbjct: 646 ISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLSSSS 705



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 146/306 (47%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+  +L  +  T++++++   K   ++ A ++F   +   C    + Y SL+  
Sbjct: 274 YRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDG 333

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      AY L  +M+  G   +   Y  L+  +   G+  +  +  +E+  +G  P 
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   +  +  +  AG +E  + +   +   GF+ D+ +++ LI  + K+G+      +++
Sbjct: 394 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 453

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ + G   D   Y  ++    K+G + +A+ +L  + E   +P  + Y  I+ G+ +  
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKID 513

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D+A+  F E K KG   N  +Y+ LI   G+ GR  EA   L EM + GLTP    ++
Sbjct: 514 RLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWN 573

Query: 302 LVTDGL 307
            + D L
Sbjct: 574 SLLDAL 579



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 141/323 (43%), Gaps = 34/323 (10%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           I+ FGK G VD A + F++  A   +   + Y S+++ LC+      A  L  +M  +  
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 181

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FN----------------- 119
           VP    Y  ++  + S+G+  +A + L+ + ++G       FN                 
Sbjct: 182 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS 241

Query: 120 ----------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
                     P     ++++  L   G +E A +++++M       +L T N +++ +CK
Sbjct: 242 LFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCK 301

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           + ++E   +++ S  + G   D  TY  LI  + K G +DEA+RL   +++ GH   P +
Sbjct: 302 ARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVV 361

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I+  F  G+ +D    F E+  +G  P+  +    +    + G   +      ++ 
Sbjct: 362 YTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIR 421

Query: 290 EMGLTPISRCFDLVTDGLKNCGK 312
             G  P  R + ++  GL   G+
Sbjct: 422 SYGFLPDVRSYSILIHGLTKAGQ 444



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 136/299 (45%), Gaps = 2/299 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  +G  G  ++A ++  +     C   V+ +NS+L  L + +    A +L   M +K 
Sbjct: 191 MIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKD 249

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY I+++  C  G++ EA   L EM      P +   +++V  L  A  LE A 
Sbjct: 250 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAY 309

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++     ++G   D  T+ SLI+ + K G+V+    ++  +   G  A+   Y  LI   
Sbjct: 310 KIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNF 369

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              G  ++  ++   L+  G KP  +L    +  +F+ G+ +     F +++  G  P+ 
Sbjct: 370 FIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDV 429

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK-HDLAEKIE 320
             Y++LI    + G+  E +N    M + G    +R ++ V DG    GK H   E +E
Sbjct: 430 RSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILE 488



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 117/269 (43%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+ AL E +    A  L+R+M   G+      +  LV A    G++ +A   + E+ 
Sbjct: 48  YTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVK 107

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P +   ++ +     AG ++ A +  +++  QG   D  ++ S+I  +CK+G + 
Sbjct: 108 GSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLG 167

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  +           Y  +I     AG  ++A++LL  L E G  P    +  I+
Sbjct: 168 EAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 227

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + ++ + D+A   F  MK K   PN   Y ++I M   GGR  EA   L EM    L 
Sbjct: 228 TCLGKKRKVDEALSLFEVMK-KDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLF 286

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P     +++ D L  C    L E  ++ E
Sbjct: 287 PNLLTVNIMVDRL--CKARKLEEAYKIFE 313



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 1/263 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            L  AL   +    A   +  M R  F P    Y +L+ A   + +   A E L++M + 
Sbjct: 15  DLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEV 74

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+   V     LV+ L   G +  A  +V+++       D+  +N  I+   K+G V+  
Sbjct: 75  GYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 134

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            + ++ +   GL  D  +Y  +I  + KAG + EA  L   +  +   P    Y  +I G
Sbjct: 135 CKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 194

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
               G+F+DA+     ++ +G  P+   +  ++T  G+  R V+ A  L E+ +    P 
Sbjct: 195 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGK-KRKVDEALSLFEVMKKDAEPN 253

Query: 297 SRCFDLVTDGLKNCGKHDLAEKI 319
           S  ++++ D L   G+ + A +I
Sbjct: 254 SSTYNIIIDMLCLGGRVEEAYRI 276



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 35/274 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    ++  +  + +++ F K G V  A E+  +      Q  V  Y +++  L ++  
Sbjct: 455 MKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDR 514

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L      KG   +   Y+ L++ +   G++ EA   L+EM  KG  P V     
Sbjct: 515 LDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVY---- 570

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
                                          T+NSL++ + K+ E+   +  + S+ ++ 
Sbjct: 571 -------------------------------TWNSLLDALVKAEEINEALVCFQSMKEMK 599

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +  TY ILI  + +    ++AF    ++ + G  P    Y  +I G+ + G   DA+
Sbjct: 600 CPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAY 659

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
             F   K  G  P+   +  LI       R +EA
Sbjct: 660 SLFERFKANGGIPDAASFNALIEGMSNANRAMEA 693



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 95/212 (44%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK   +  +  T   I++   K   +D A  +F +  +   +  V+LY+SL+  
Sbjct: 484 YEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDG 543

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++A   + ++ EA    Q M +    P 
Sbjct: 544 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPN 603

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A      M KQG V ++ T+ ++I  + K G +     ++ 
Sbjct: 604 TYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFE 663

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
                G   D +++  LI  +S A    EA++
Sbjct: 664 RFKANGGIPDAASFNALIEGMSNANRAMEAYQ 695



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/286 (20%), Positives = 120/286 (41%), Gaps = 1/286 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A+E+  +      +  V L+ +L+ AL        A AL+  +      PD   Y + 
Sbjct: 62  ERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVC 121

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++ +  +G +  A +F  E+  +G  P       ++  L  AG L  A+++  +M  +  
Sbjct: 122 IDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERS 181

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           V     +N++I     +G  E   ++   + + G    V ++  ++  + K   +DEA  
Sbjct: 182 VPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALS 241

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   + +D  +P  S Y  II  +   G+ ++A+    EM+     PN     +++    
Sbjct: 242 LFEVMKKDA-EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLC 300

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +  +  EA       ++ G  P    +  + DGL   G+ D A ++
Sbjct: 301 KARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRL 346



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 89/207 (42%)

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M+  G+  P +    L   L+ A  L+ A   V  M +  F      +  LI  + ++  
Sbjct: 1   MAVLGYGLPNQACADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARR 60

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            E  +E+   + ++G    V  +  L+ A+++ G + +A  L+  +     +P   LY  
Sbjct: 61  PERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNV 120

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            I    + G  D A  FF E+K +G  P+   YT +I +  + GR  EA     +M    
Sbjct: 121 CIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER 180

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKI 319
             P +  ++ +  G  + G+ + A K+
Sbjct: 181 SVPCAYAYNTMIMGYGSAGRFEDAYKL 207


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 146/318 (45%), Gaps = 1/318 (0%)

Query: 3   KTIELM-KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           K +E+M +  N+  + +T +++I+ +     ++ A  V +K  A   Q  V+ YN++  A
Sbjct: 186 KLLEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARA 245

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +      A  LI +M      P++RT  I+++ +C  G M EA  FL  M + G +P 
Sbjct: 246 YAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPN 305

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++G L+A       + +  M + G   D+ TF++++     +G ++ C E++ 
Sbjct: 306 PVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFN 365

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G+  D+  Y IL     +AG   +A  LL ++ + G +    ++  II G    G
Sbjct: 366 DMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAG 425

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + D AF    +M   G  PN   Y  LI   G   +  +A   L  M E G+ P      
Sbjct: 426 KMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQ 485

Query: 302 LVTDGLKNCGKHDLAEKI 319
           LV D  +  G    A +I
Sbjct: 486 LVADAWRAIGLFKEANRI 503



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 36/336 (10%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
           L+ +I  F   G VD A+++F K   + C+     YN+L+     V   + +  L+  M 
Sbjct: 133 LNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMG 192

Query: 80  RKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +   V P+ RTY IL+ AWC+  K+ EA   L +M   G  P V   + + +     G  
Sbjct: 193 QDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGET 252

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL------------ 186
           E A++++ KM       +  T   +I   CK G +   +   Y + +L            
Sbjct: 253 EKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSL 312

Query: 187 -----------------------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                                  G+  DV T+  ++ A S AG++D    + +++V+ G 
Sbjct: 313 IKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGI 372

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P    Y+ + KG  R GQ   A    + M   G   N  ++T +I+     G+   A +
Sbjct: 373 EPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFS 432

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +M EMG +P  + ++ +  G     +   AE+I
Sbjct: 433 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEI 468



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 127/292 (43%), Gaps = 5/292 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G    A  VF+  T    +  ++ Y +L+ AL   K F    AL+ ++   G  PD    
Sbjct: 74  GKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILL 133

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             ++NA+  SGK+ EA +  Q+M + G  P     + L++G    G    + +++  M +
Sbjct: 134 NAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQ 193

Query: 151 QGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
              V  +  T+N LI+  C   ++E    + + +   G+  DV TY  +  A ++ G  +
Sbjct: 194 DENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETE 253

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A RL+  +  +  KP       II G  + G   +A  F   MK  G  PN  V+  LI
Sbjct: 254 KAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLI 313

Query: 270 T--MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +       V+ A  L  M E G+ P    F  + +   + G  D  E+I
Sbjct: 314 KGYLDATDTNGVDEA--LTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEI 363



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 122/289 (42%), Gaps = 14/289 (4%)

Query: 43  CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102
           C   N  Q V     L+ AL      H A A+   +  +G  P   TY  LV A     +
Sbjct: 51  CRGNNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKR 110

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
            +     L +++D G  P     + ++    ++G ++ A ++  KM + G      T+N+
Sbjct: 111 FKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNT 170

Query: 163 LIE---TICKSGEVEFCVEMYYSVCKLGLCADVS----TYKILIPAVSKAGMIDEAFRLL 215
           LI+    + +  E    +EM      +G   +V     TY ILI A      ++EA+ +L
Sbjct: 171 LIKGFGIVGRPYESMKLLEM------MGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVL 224

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
           H +V  G +P    Y  + +   + G+ + A     +M+     PN     ++I+   + 
Sbjct: 225 HKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKE 284

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDG-LKNCGKHDLAEKIELLE 323
           G   EA  +L  M E+G+ P    F+ +  G L     + + E + L+E
Sbjct: 285 GNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLME 333



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 3/152 (1%)

Query: 174 EFCVEMYYSVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           E C + +  +C+    C  V     L+ A+   G   EA  + HNL E+GHKP    Y  
Sbjct: 41  ERCDQSHCLICRGNNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGHKPTLITYTT 100

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++  + R+ +F       S++   G  P+  +   +I      G+  EA     +M E G
Sbjct: 101 LVAALTRQKRFKSIPALLSKVADNGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYG 160

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
             P +  ++ +  G    G+    E ++LLE+
Sbjct: 161 CKPTTSTYNTLIKGFGIVGRP--YESMKLLEM 190



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 35/179 (19%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN--------------------- 41
           + + LM+ + +     T S I+  +   GL+DN  E+FN                     
Sbjct: 327 EALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGY 386

Query: 42  --------------KCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
                           + +  Q  V+++ +++   C       A++L  +M   G  P+ 
Sbjct: 387 VRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNL 446

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           +TY  L+  +  + +  +A+E L  M ++G  P +    L+       G  + A +++N
Sbjct: 447 KTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRILN 505


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 142/315 (45%), Gaps = 3/315 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    + +  T + +I  + + G ++ A ++FN+      +  V+  N+L+  +C+   
Sbjct: 254 MRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNR 313

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A    R M +KG   +  TY + +NA+C+   M +A EFL EMS  G  P       
Sbjct: 314 ISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYT 373

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  AG L+ A  +V+K+ + GF LD   +N LI   CK  +++   E    +   G
Sbjct: 374 LICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAG 433

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           +  D  TY  LI   SK G    A + +  +  E+G  P    Y  +I         D+A
Sbjct: 434 VKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEA 493

Query: 247 FCFFSEMKIKGH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
              F EM       PPN  +Y +LI    +  +   A + L +M   G+ P +  ++ + 
Sbjct: 494 IKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIF 553

Query: 305 DGLKNCGKHDLAEKI 319
             L++    D A K+
Sbjct: 554 KALRDKNWLDKAFKL 568



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 7/295 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV------LLYNSLLFA 61
           MK  N+  +  T  ++I    K   +D+A+EVF K      +  V      ++YN+L+  
Sbjct: 178 MKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDG 237

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+V     A  L+ +M      P   T+  L+N +C SG++  A +   EM +    P 
Sbjct: 238 LCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPN 297

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + LV G+     + +A +    M ++G   +  T+   I   C    +   +E   
Sbjct: 298 VITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLD 357

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K G   D   Y  LI  +++AG +D+A  ++  L E G       Y  +I    ++ 
Sbjct: 358 EMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKN 417

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTP 295
           + D A  + +EM++ G  P+   Y  LI+   + G F  A  ++ +MT E GL+P
Sbjct: 418 KLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSP 472



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 131/299 (43%), Gaps = 12/299 (4%)

Query: 26  EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI-----R 80
           EFGK  L+        K    N Q  V+ +  L+  LC+ +    A  +  +M       
Sbjct: 167 EFGKMNLL------MRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEET 220

Query: 81  KGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           K FV PD   Y  L++  C  G+  EA   + +M      P     + L+ G   +G +E
Sbjct: 221 KVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIE 280

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++ N+M       ++ T N+L++ +CK   +   VE +  + + GL  +  TY + I
Sbjct: 281 VAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFI 340

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A      +++A   L  + +DG  P   +Y  +I G+ + G+ DDA    S++K  G  
Sbjct: 341 NAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFC 400

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            +R  Y +LI+   +  +   A  +L EM   G+ P S  ++ +       G   LA K
Sbjct: 401 LDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHK 459



 Score = 77.4 bits (189), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 115/258 (44%), Gaps = 3/258 (1%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           +M+   L  +  T ++ I  F     ++ A+E  ++ +   C    ++Y +L+  L +  
Sbjct: 323 VMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAG 382

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A +++ ++   GF  D+  Y +L++ +C   K+  AQE+L EM   G  P     +
Sbjct: 383 RLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYN 442

Query: 127 LLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            L+      G  + A + + KM  ++G    + T+ +LI   C +  ++  ++++  +  
Sbjct: 443 TLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNN 502

Query: 186 LG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           +   +  +   Y ILI ++ K   ++ A  LL ++   G  P  + Y  I K +  +   
Sbjct: 503 VASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWL 562

Query: 244 DDAFCFFSEMKIKGHPPN 261
           D AF     M  +   P+
Sbjct: 563 DKAFKLMDRMVEQACNPD 580



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 125/314 (39%), Gaps = 43/314 (13%)

Query: 14  SVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           ++ P T++L  +I +  + G  + A  + +     N  +     N+LL  L + + F   
Sbjct: 112 NIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKM 171

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+R+M      P   T+ IL+N  C   ++ +A E  ++M                  
Sbjct: 172 NLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMK----------------- 214

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---- 187
               G  E  K  V          D   +N+LI+ +CK G  E       ++C +G    
Sbjct: 215 ----GEKEETKVFV--------APDTIMYNTLIDGLCKVGRQE------EALCLMGKMRS 256

Query: 188 -LCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             CA   +T+  LI    ++G I+ A +L + +     +P       ++ GM +  +   
Sbjct: 257 DQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRIST 316

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A  FF  M+ KG   N   YT+ I          +A  +L EM++ G  P +  +  +  
Sbjct: 317 AVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLIC 376

Query: 306 GLKNCGKHDLAEKI 319
           GL   G+ D A  +
Sbjct: 377 GLAQAGRLDDASSV 390



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 95/241 (39%), Gaps = 14/241 (5%)

Query: 93  LVNAWCSSGKMREAQEFLQEM--SDKGFNPPVRGRDLLVQGLLNAGYLESAKQ------M 144
           ++N    SG++  A   L EM   +  F P  +   ++   LL    LE   +      +
Sbjct: 45  IINLLLKSGRVDNAMNVLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGL 104

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           V+K  K     D      LI  +C+SG       +  ++  L    D +    L+  + K
Sbjct: 105 VSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGK 164

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH------ 258
           A    +   L+  + +   +P    +  +I  + +  + DDA   F +MK +        
Sbjct: 165 AREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFV 224

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+  +Y  LI    + GR  EA   + +M      P +  F+ + +G    G+ ++A K
Sbjct: 225 APDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHK 284

Query: 319 I 319
           +
Sbjct: 285 L 285



 Score = 38.5 bits (88), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 61/133 (45%), Gaps = 2/133 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT--AFNCQQCVLLYNSLLFALCEVKLFHG 70
           LS +  T   +I  +  +  +D A+++F +    A       ++YN L+ +LC+    + 
Sbjct: 470 LSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDSLCKQTQVNF 529

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A +L+  M  +G +P+  TY  +  A      + +A + +  M ++  NP     ++L +
Sbjct: 530 ALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITMEILTE 589

Query: 131 GLLNAGYLESAKQ 143
            L   G +   K+
Sbjct: 590 WLSAVGEITKLKK 602


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 129/267 (48%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+   C      G + L   M ++G  PD  TY  L+   C+ GK+ +A +   E
Sbjct: 501 ITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 560

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
               G    +    ++++G   A  +E  + + N+++ +   L+   +N +I+  C++G 
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V   +++  ++   G+  + +TY  LI  V   G++++A  L+  + ++G  P    Y  
Sbjct: 621 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 680

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  + GQ D A   + EM      PN+  YT++I    + G   +A N L++M E G
Sbjct: 681 LIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESG 740

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + P    ++++T+G       D A K+
Sbjct: 741 IVPDVVTYNVLTNGFCKANDMDNAFKV 767



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 47/366 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAV----EVFNKCTAFNCQQCVLLYNSL 58
           K  ++M   N++ +  TL  +++ F K   +++A     E+ +   + +   C     S+
Sbjct: 346 KIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCY----SV 401

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC+   +H A+   + M+ + F P      +LV   C  GK  EA E    + +KG 
Sbjct: 402 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGS 461

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
                  + L+ GL  AG L  A ++V +M+++G  +D  T+N+LI   C  G+VE C  
Sbjct: 462 PASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR 521

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL------------LH---------- 216
           +   + K G+  D+ TY  L+  +   G +D+A +L            +H          
Sbjct: 522 LREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYC 581

Query: 217 --NLVEDGHKPFPSL-----------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             N +ED    F  L           Y  IIK   + G    A      MK KG  PN  
Sbjct: 582 KANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 641

Query: 264 VYTMLIT-MCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            Y+ LI  +C  G   VE A +L+ EM + G  P   C+  +  G    G+ D AE   L
Sbjct: 642 TYSSLIHGVCNIG--LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 699

Query: 322 LEVSLR 327
             +S  
Sbjct: 700 EMISFN 705



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 145/318 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  ++M   N   S   L++++    K G    A E++ +          +  N+L+  
Sbjct: 415 FRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHG 474

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A  +++ M+ +G   D+ TY  L+  +C+ GK+       +EM+ +G  P 
Sbjct: 475 LCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPD 534

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L++GL N G L+ A ++ ++    G + ++ T+  ++E  CK+  +E    ++ 
Sbjct: 535 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 594

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  +   Y I+I A  + G +  A +LL N+   G  P  + Y+ +I G+   G
Sbjct: 595 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 654

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             +DA     EM+ +G  PN   YT LI    + G+   A +  +EM    + P    + 
Sbjct: 655 LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYT 714

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++ DG    G  + A  +
Sbjct: 715 VMIDGYCKLGNMEKANNL 732



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 111/239 (46%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D+A++++++  A      +  Y  ++   C+         L   ++ K    +   Y
Sbjct: 549 GKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVY 608

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++ A C +G +  A + L+ M  KG  P       L+ G+ N G +E AK ++++M K
Sbjct: 609 NIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRK 668

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +GFV ++  + +LI   CK G+++     +  +    +  +  TY ++I    K G +++
Sbjct: 669 EGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEK 728

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           A  LL  + E G  P    Y  +  G  +    D+AF    +M  +G P +   YT L+
Sbjct: 729 ANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 787



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 135/314 (42%), Gaps = 6/314 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           K  E+ +  +    P   S   +I    K G ++NA+E+F K         V+ YN ++ 
Sbjct: 204 KCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIIN 263

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A+ L  +M  KG  P+ +TY  L+N         +    L EM   GFNP
Sbjct: 264 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNP 323

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + L+ G    G +E A ++ + MI +       T  SL++  CKS ++E      
Sbjct: 324 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENAL 383

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL         ++  + K      AFR    ++    +P   L   ++ G+ + 
Sbjct: 384 EEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKD 443

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISR- 298
           G+  +A   +  +  KG P ++     LI  +CG  G+  EA+  + EM E GL P+ R 
Sbjct: 444 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCG-AGKLPEASRIVKEMLERGL-PMDRI 501

Query: 299 CFDLVTDGLKNCGK 312
            ++ +  G  N GK
Sbjct: 502 TYNALILGFCNEGK 515



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 142/314 (45%), Gaps = 5/314 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +  +    K    +   EVF   +   C   V  + +++ ALC+      A  L 
Sbjct: 185 SLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPD-VFSFTNVINALCKGGKMENAIELF 243

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +M + G  P+  TY  ++N  C +G++  A E  ++M+ KG  P ++    L+ GL+  
Sbjct: 244 MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKL 303

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
            + +    ++++MI  GF  ++  FN+LI+  CK G +E  +++   +    +     T 
Sbjct: 304 NFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTL 363

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+    K+  I+ A   L  ++  G    P     ++  + ++ ++  AF F   M  
Sbjct: 364 YSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLS 423

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF-DLVTDGLKNCGKHD 314
           +   P+  + TML+    + G+ +EA      + E G +P S+   + +  GL   GK  
Sbjct: 424 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG-SPASKVTSNALIHGLCGAGKLP 482

Query: 315 LAEKI--ELLEVSL 326
            A +I  E+LE  L
Sbjct: 483 EASRIVKEMLERGL 496



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T  +++E + K   +++   +FN+  +   +   ++YN ++ A C+      A  L+  
Sbjct: 571 HTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLEN 630

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG +P+  TY+ L++  C+ G + +A+  + EM  +GF P V     L+ G    G 
Sbjct: 631 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 690

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +++A+    +MI      +  T+  +I+  CK G +E    +   + + G+  DV TY +
Sbjct: 691 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 750

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           L     KA  +D AF++   +  +G       Y  ++ G
Sbjct: 751 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +  +  T S +I      GLV++A  + ++         V+ Y +L+   C+
Sbjct: 628 LENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCK 687

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A +    MI     P+K TY ++++ +C  G M +A   L +M + G  P V  
Sbjct: 688 LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 747

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
            ++L  G   A  +++A ++ ++M  +G  +D  T+ +L+ 
Sbjct: 748 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVH 788


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ YNS++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P   VY  LI       ++ +A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID--SHCKEGRV 495

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 496 IESEKLFDLMVR 507



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 1/283 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY  ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +M +  L+P +  ++ +   L    K D A+++ +LE+  R +
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL-ILEMLDRGI 475



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 138/307 (44%), Gaps = 35/307 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    S++I  + K G VD A+ VF+K                  
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK------------------ 399

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P
Sbjct: 400 -----------------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+  L      + AK+++ +M+ +G  LD   FNS+I++ CK G V    +++
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + ++G+  ++ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  + 
Sbjct: 503 DLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + +DA   F EM+  G  P+   Y +++    +  R   A    V +TE G       +
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 301 DLVTDGL 307
           +++  GL
Sbjct: 623 NIILHGL 629



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T+NS+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + + G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L   L  +G  P    Y+ + + +  +G  ++    F  M+  G   N 
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDE 752



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+ +LC    
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   D   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYST 519

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+N+LI   CK   +E  + ++  +   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    D+A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +    ++  GL P  R + L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 94.0 bits (232), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           L K ++  V P   T + +++   K+G    A ++F+  T    +  +  Y +LL     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                  + L+  M+R G  P+   ++IL+ A+   GK+ +A     +M  +G NP    
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++  L  +G +E A +   +MI +        +NSLI ++C   + +   E+   + 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+C D   +  +I +  K G + E+ +L   +V  G KP    Y+ +I G    G+ D
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMD 531

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    + M   G  P+   Y  LI    +  R  +A     EM   G++P    ++++ 
Sbjct: 532 EATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591

Query: 305 DGL 307
            GL
Sbjct: 592 QGL 594



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY IL+ + C +G++      L  +  
Sbjct: 60  ALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIK 119

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V   ++L++GL +    +
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQ 179

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+ ++ ++I    K G+++     Y+ +   G+  +V TY  
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNS 239

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    + GR  EA      MT+ GL P    +  +  G    G   L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA--LVE 357

Query: 318 KIELLEVSLRS 328
              LL++ +R+
Sbjct: 358 MHGLLDLMVRN 368



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  ++ TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTY 94

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI +   AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN   Y +L+       R  EA   L  M + G
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 128/286 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I+   K G +  A +V  + T  N     ++YN  +  LC +     A + +  M  
Sbjct: 528 TTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQS 587

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD+ TY  ++ A    GK  +A + L  M      P +     L+ GL  AG +E 
Sbjct: 588 TGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEK 647

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK ++N+M   GF     T   +++   +    +  +E++  +   GLCAD++ Y  L+ 
Sbjct: 648 AKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVR 707

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +   GM  +A  +L  +   G  P    +  +I G F+ G  D+AF  + +M   G  P
Sbjct: 708 VLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISP 767

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           N   +  L+      GR  E+   L EM + G+ P +  +D++  G
Sbjct: 768 NVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTG 813



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 10/319 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   + V     + ++    + G VD A ++ +       +  V+ Y   +   C  
Sbjct: 198 ERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRR 257

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A++L   M+RKG +PD  T + LV   C  G+  EA    +EM   G  P     
Sbjct: 258 NAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTY 317

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +L+  L  A     +  ++ +++ +G V+DL  + +L++ +CK G+++   +M+     
Sbjct: 318 CMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALS 377

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
                +  TY +LI A+ KAG +D A ++L  + E    P    ++ II G+ +RG    
Sbjct: 378 DNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGK 437

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF----VEAA-NYLVEMTEMGLTPISRCF 300
           A  +  EMK +G  PN   Y  +I      G F     EAA +   EM   G+       
Sbjct: 438 ATDYMREMKERGIDPNVVTYGTVID-----GSFKCLGQEAALDVYHEMLCEGVEVNKFIV 492

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           D + +GLK  GK + AE +
Sbjct: 493 DSLVNGLKKNGKIEKAEAL 511



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 126/288 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++ + K G ++ A  V  +  A      V+ YNSL+  LC       A  ++  M R G
Sbjct: 180 LVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDG 239

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY + +  +C    + +A    +EM  KG  P V     LV GL   G    A 
Sbjct: 240 VEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAY 299

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M K G   +  T+  LI+T+ K+      + +   V   G+  D+  Y  L+  +
Sbjct: 300 ALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWL 359

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G IDEA  +  + + D H P    Y  +I  + + G  D A    SEM+ K   PN 
Sbjct: 360 CKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNV 419

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
             ++ +I    + G   +A +Y+ EM E G+ P    +  V DG   C
Sbjct: 420 VTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKC 467



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 119/260 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ +NSL+   C+V     A+A+  RM  +G   D   Y  LV   C +G++  A++ + 
Sbjct: 174 VVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVD 233

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P V    + +        ++ A  +  +M+++G + D+ T ++L+  +CK G
Sbjct: 234 TMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDG 293

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                  ++  + K+G   +  TY +LI  ++KA   +E+  LL  +V  G      +Y 
Sbjct: 294 RFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYT 353

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++  + + G+ D+A   F       H PN   YT+LI    + G    A   L EM E 
Sbjct: 354 ALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEK 413

Query: 292 GLTPISRCFDLVTDGLKNCG 311
            ++P    F  + +GL   G
Sbjct: 414 SISPNVVTFSSIINGLVKRG 433



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 118/249 (47%), Gaps = 2/249 (0%)

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLVQ 130
           AL+  M ++G   D  T   ++   C  G++  A    + M   G      V G + LV 
Sbjct: 123 ALLAEMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVD 182

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G +E+A  +  +M  QG  +D+  +NSL+  +C++GEV+   +M  ++ + G+  
Sbjct: 183 GYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEP 242

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +V TY + I    +   +D+AF L   +V  G  P     + ++ G+ + G+F +A+  F
Sbjct: 243 NVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALF 302

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  PN   Y MLI    +  R  E+ + L E+   G+      +  + D L   
Sbjct: 303 REMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKE 362

Query: 311 GKHDLAEKI 319
           GK D A+ +
Sbjct: 363 GKIDEAKDM 371



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 131/289 (45%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +D A ++F    + N     + Y  L+ ALC+     GA  ++  M  K   P+  
Sbjct: 361 KEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVV 420

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T++ ++N     G + +A ++++EM ++G +P V     ++ G       E+A  + ++M
Sbjct: 421 TFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEM 480

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + +G  ++    +SL+  + K+G++E    ++  + + G+  D   Y  LI  + K G +
Sbjct: 481 LCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNL 540

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             AF++   L E    P   +Y   I  +   G+  +A  F  EM+  G  P++  Y  +
Sbjct: 541 PAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTM 600

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
           I    R G+  +A   L  M    + P    +  +  GL   G  + A+
Sbjct: 601 IAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAK 649



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 143/324 (44%), Gaps = 2/324 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK   +  +  T ++ I E+ +   VD+A  ++ +         V+  ++L+  LC+
Sbjct: 232 VDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCK 291

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  AYAL R M + G  P+  TY +L++    + +  E+   L E+  +G    +  
Sbjct: 292 DGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIM 351

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+  L   G ++ AK M    +      +  T+  LI+ +CK+G V+   ++   + 
Sbjct: 352 YTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEME 411

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +  +V T+  +I  + K G + +A   +  + E G  P    Y  +I G F+    +
Sbjct: 412 EKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQE 471

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   + EM  +G   N+ +   L+    + G+  +A     EM E G+      +  + 
Sbjct: 472 AALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLI 531

Query: 305 DGLKNCGKHDLAEKI--ELLEVSL 326
           DGL   G    A K+  EL E +L
Sbjct: 532 DGLFKTGNLPAAFKVGQELTEKNL 555



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 127/296 (42%), Gaps = 9/296 (3%)

Query: 14  SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S+ P   T S +I    + G V+ A  + N+ ++       L +  +L A  + +     
Sbjct: 624 SIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLI 683

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   M+  G   D   Y  LV   C +G  R+A   L+EMS +G  P     + L+ G
Sbjct: 684 LEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILG 743

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              +G+L++A    ++M+  G   ++ TFN+L+  +  +G +     +   + K G+   
Sbjct: 744 HFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPS 803

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY IL+    K     EA RL   +V  G  P  S Y  +I    + G    A   F+
Sbjct: 804 NLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFN 863

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-------ISRCF 300
           EM+ +G  P    Y +L++   +     E   +L +M E G +P       ISR F
Sbjct: 864 EMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAF 919



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 2/303 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L     T + +I    + G    A+++ N     + +  ++ Y++L+  L E
Sbjct: 582 LEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFE 641

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE-AQEFLQEMSDKGFNPPVR 123
                 A  L+  M   GF P   T+  ++ A CS G+  +   E  + M + G    + 
Sbjct: 642 AGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA-CSQGRRSDLILEIHEWMMNAGLCADIT 700

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + LV+ L   G    A  ++ +M  +G   D  TFN+LI    KSG ++     Y  +
Sbjct: 701 VYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQM 760

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  +V+T+  L+  +  AG I E+  +L+ + + G +P    Y  ++ G  ++   
Sbjct: 761 LYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNK 820

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            +A   + EM  KG  P    Y  LI+   + G   +A     EM   G+ P S  +D++
Sbjct: 821 VEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDIL 880

Query: 304 TDG 306
             G
Sbjct: 881 VSG 883



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 101/234 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           + +YN+L+  LC   +   A  ++  M  +G  PD  T+  L+     SG +  A     
Sbjct: 699 ITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYD 758

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G +P V   + L+ GL +AG +  +  ++N+M K+G      T++ L+    K  
Sbjct: 759 QMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQS 818

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                V +Y  +   G    VSTY  LI   SK GM+ +A  L + +   G  P    Y 
Sbjct: 819 NKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYD 878

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
            ++ G  +     +   F  +MK KG  P++   + +     + G   EA   L
Sbjct: 879 ILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPGMSWEARRLL 932



 Score = 71.6 bits (174), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/212 (22%), Positives = 92/212 (43%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           +G+   A+ V  + +        + +N+L+    +      A++   +M+  G  P+  T
Sbjct: 712 NGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVAT 771

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +  L+    S+G++ E+   L EM  +G  P     D+LV G         A ++  +M+
Sbjct: 772 FNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMV 831

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +GF+  + T+N+LI    K G +    E++  +   G+     TY IL+   SK     
Sbjct: 832 GKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGT 891

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           E  + L ++ E G  P     + I +   + G
Sbjct: 892 EVRKFLKDMKEKGFSPSKGTLSSISRAFSKPG 923



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 53/113 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  S  T  +++  +GK      AV ++ +         V  YN+L+    +V +
Sbjct: 795 MKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGM 854

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              A  L   M  +G +P   TY ILV+ W       E ++FL++M +KGF+P
Sbjct: 855 MSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSP 907


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 127/276 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            +++++ F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA +   EM D+G  P       L+ G    G L+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ QGF  D  T+N+LI  +CK G++    ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YT+++    + G     +  L EM   G  P
Sbjct: 379 PDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + K G +D    + +   A   Q  V  Y+ L+  LC+      
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDE 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ L   M+ +G VP+  T+  L++  C +GK+  A E  ++M  +GF+P     + L+ 
Sbjct: 225 AHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L  AK + ++M  +G   D  T+ +LI+  CK G++E   E    + K  +  
Sbjct: 285 GLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  +Y  LI  + K G   +A ++L  ++  G KP    Y  ++    + G         
Sbjct: 345 DDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLL 404

Query: 251 SEMKIKGHPP 260
            EM+  GH P
Sbjct: 405 KEMQRDGHVP 414



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 114/250 (45%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 138 FFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G++
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKL 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +   G   D  TY  LI  + K G + +A  L   +   G KP    Y  +
Sbjct: 258 DLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF +   M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLV 303
            P +  + +V
Sbjct: 378 KPDTGTYTIV 387



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E F                 +L  L ++K F   ++  + ++
Sbjct: 69  FSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
              +      + IL++ +C  G++R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   +++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++  G  P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  +  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++  +   L  FN L++  CK GE+     ++  + K GL   V ++  L+    K 
Sbjct: 125 KEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    Y+ +I G+ +  + D+A   F EM  +G  PN   +
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + G+   A     +M   G +P    ++ +  GL  C K DL +  +L  E+
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL--CKKGDLXQAKDLXDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 48.1 bits (113), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 51/104 (49%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E   +    N +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  PD  TY I+++ +C +G ++   + L+EM   G  P V
Sbjct: 373 LSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCV 416


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 150/323 (46%), Gaps = 4/323 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++   L++    +VS    + +I    + G V+ A  ++ + +       V   N ++ A
Sbjct: 175 YEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNA 234

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+          +  +  KG  PD  TY  L++A+ S G M EA E +  M  KGF+P 
Sbjct: 235 LCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPG 294

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   + ++ GL   G  E AK++  +M++ G   D  T+ SL+   CK G+      ++ 
Sbjct: 295 VYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFS 354

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  D+  +  ++   +++G +D+A    +++ E G  P   +Y  +I+G  R+G
Sbjct: 355 DMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 414

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              +A    +EM  +G   +   Y T+L  +C R     EA     EMTE GL P S   
Sbjct: 415 MISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKR-KMLGEADKLFNEMTERGLFPDSYTL 473

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ DG  +C   +L   +EL +
Sbjct: 474 TILIDG--HCKLGNLQNAMELFK 494



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 142/319 (44%), Gaps = 2/319 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  + +    + V+  TL++++    K G ++      ++         ++ YN+L+ A
Sbjct: 210 WRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISA 269

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP- 120
                L   A+ L+  M  KGF P   TY  ++N  C  GK   A+E   EM   G +P 
Sbjct: 270 YSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 329

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
               R LL++       +E+ + + + M  +  V DL  F+S++    +SG ++  +  +
Sbjct: 330 STTYRSLLMEACKKGDAVET-ENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYF 388

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            SV + GL  D   Y ILI    + GMI EA  L + +++ G       Y  I+ G+ +R
Sbjct: 389 NSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKR 448

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
               +A   F+EM  +G  P+    T+LI    + G    A     +M E  +      +
Sbjct: 449 KMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTY 508

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + + DG    G  D A++I
Sbjct: 509 NTLLDGFGKVGDIDTAKEI 527



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 2/245 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TL+++I+   K G + NA+E+F K      +  V+ YN+LL    +V     A  +   M
Sbjct: 472 TLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADM 531

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + K  +P   +++ILVNA CS G + EA     EM  K   P V   + +++G   +G  
Sbjct: 532 VSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNA 591

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE--FCVEMYYSVCKLGLCADVSTYK 196
              +  + KMI +GFV D  ++N+LI    K   +   F +       + GL  DV TY 
Sbjct: 592 SDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYN 651

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            ++    +   + EA  +L  ++E G  P  S Y  +I G   +    +AF F  EM  +
Sbjct: 652 SILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQR 711

Query: 257 GHPPN 261
           G  P+
Sbjct: 712 GFSPD 716



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 126/287 (43%), Gaps = 17/287 (5%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-----------------DKRT 89
           N +   L  ++++  L        A + + RMIR+  V                  +   
Sbjct: 98  NFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSV 157

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +L+  +  + K+REA E    +  KG+   +   + L+  L+  G++E A ++  ++ 
Sbjct: 158 FDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEIS 217

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           + G  +++ T N ++  +CK G++E        V + G+  D+ TY  LI A S  G+++
Sbjct: 218 RSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLME 277

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EAF L+H +   G  P    Y  +I G+ + G+++ A   F+EM   G  P+   Y  L+
Sbjct: 278 EAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLL 337

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               + G  VE  N   +M    + P   CF  +       G  D A
Sbjct: 338 MEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKA 384



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 37/312 (11%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ + + G++  A+ + N+     C   V+ YN++L  LC+ K+   A  L   M  
Sbjct: 404 TILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTE 463

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  PD  T  IL++  C  G ++ A E  ++M +K     V   + L+ G    G +++
Sbjct: 464 RGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDT 523

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGE-------------------VEFCVEMYY 181
           AK++   M+ +  +    +F+ L+  +C  G                    V  C  M  
Sbjct: 524 AKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIK 583

Query: 182 SVCKLGLCADVS----------------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             C+ G  +D                  +Y  LI    K   + +AF L+  + E     
Sbjct: 584 GYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGL 643

Query: 226 FPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P +  Y  I+ G  R  Q  +A     +M  +G  P+R  YT LI          EA  
Sbjct: 644 VPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFR 703

Query: 284 YLVEMTEMGLTP 295
           +  EM + G +P
Sbjct: 704 FHDEMLQRGFSP 715



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 126/305 (41%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   GL++ A E+ +   +      V  YN+++  LC+   +  A  +   M
Sbjct: 262 TYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  PD  TY  L+   C  G   E +    +M  +   P +     ++     +G L
Sbjct: 322 LRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A    N + + G + D   +  LI+  C+ G +   + +   + + G   DV TY  +
Sbjct: 382 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTI 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K  M+ EA +L + + E G  P       +I G  + G   +A   F +MK K  
Sbjct: 442 LHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRI 501

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   Y  L+   G+ G    A     +M    + P    F ++ + L  C K  L+E 
Sbjct: 502 KLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNAL--CSKGHLSEA 559

Query: 319 IELLE 323
             + +
Sbjct: 560 FRVWD 564



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 115/250 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S ++  F + G +D A+  FN           ++Y  L+   C   +   A  L   M+
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEML 427

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++G   D  TY  +++  C    + EA +   EM+++G  P      +L+ G    G L+
Sbjct: 428 QQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQ 487

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +A ++  KM ++   LD+ T+N+L++   K G+++   E++  +    +     ++ IL+
Sbjct: 488 NAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILV 547

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+   G + EAFR+   ++    KP   +   +IKG  R G   D   F  +M  +G  
Sbjct: 548 NALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFV 607

Query: 260 PNRPVYTMLI 269
           P+   Y  LI
Sbjct: 608 PDCISYNTLI 617



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 123/287 (42%), Gaps = 4/287 (1%)

Query: 37  VEVFNK--CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94
           VE+ N    T  NC     +++ L+    + +    AY     +  KG+         L+
Sbjct: 138 VEIVNSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALI 197

Query: 95  NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
            +    G +  A    QE+S  G    V   +++V  L   G +E     ++++ ++G  
Sbjct: 198 GSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVY 257

Query: 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            D+ T+N+LI      G +E   E+ +++   G    V TY  +I  + K G  + A  +
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              ++  G  P  + Y  ++    ++G   +    FS+M+ +   P+   ++ ++++  R
Sbjct: 318 FAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTR 377

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            G   +A  Y   + E GL P +  + ++  G   C K  ++E + L
Sbjct: 378 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGY--CRKGMISEAMNL 422



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 25/236 (10%)

Query: 106 AQEFLQEMSDKGFN-PPVRGRDL----LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
            Q F+ ++   GFN P  +   L    ++  L+ +G L  A+  V +MI++  V  +E  
Sbjct: 85  GQRFVDQL---GFNFPNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIV 141

Query: 161 NSLIETICKSGE----VEFCVEMYYSVCKL-------------GLCADVSTYKILIPAVS 203
           NSL+ T    G      +  +  +    KL             G    +     LI ++ 
Sbjct: 142 NSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACNALIGSLV 201

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           + G ++ A+R+   +   G          ++  + + G+ +    F SE++ KG  P+  
Sbjct: 202 RIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIV 261

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            Y  LI+     G   EA   +  M   G +P    ++ V +GL   GK++ A+++
Sbjct: 262 TYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 135/290 (46%), Gaps = 1/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I  F K G  D A+ VF        +  ++LYN+L+  L +  L   A  L+  M
Sbjct: 332 TYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEM 391

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G +P+  TY +++N  C  G + +A   + +   KG  P +   + L+ G      L
Sbjct: 392 AENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKL 451

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA +MVN+M  QG   D+ T+N+L+  +CK+G+ E  +E++ ++ + G   ++ TY I+
Sbjct: 452 DSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNII 511

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + ++ KA  ++EA  LL  +   G KP    +  +  G  + G  D A+  F  M+ +  
Sbjct: 512 VDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYD 571

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                  Y ++++          A      M   G  P +  + +V DG 
Sbjct: 572 VCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGF 621



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 137/310 (44%), Gaps = 9/310 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAV---------EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           T ++ ++   + G +D AV         E   K      +   L YNS++   C+  +  
Sbjct: 253 TFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQ 312

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +++  + KGF PD+ TY  L+N +C  G    A    ++   KG  P +   + L+
Sbjct: 313 DANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLI 372

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
           +GL   G +  A Q++N+M + G + ++ T+N +I  +CK G V     +       G  
Sbjct: 373 KGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCP 432

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+ TY  LI    K   +D A  +++ +   G  P    Y  ++ G+ + G+ ++    
Sbjct: 433 PDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEI 492

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
           F  M+ KG  PN   Y +++    +  +  EA + L EM   GL P    F  +  G   
Sbjct: 493 FKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCK 552

Query: 310 CGKHDLAEKI 319
            G  D A ++
Sbjct: 553 IGDIDGAYQL 562



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 9/297 (3%)

Query: 24  IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83
           ++ +G+ G V  AV+ F +   +NC   V  +N+++  L E    + A+ +  RM  +G 
Sbjct: 83  MKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGV 142

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
             D  TY I + ++C + +   A   L+ M + G +        +V GL ++G  + A++
Sbjct: 143 QSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARE 202

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           + ++M+ +    D+  FN L+  +CK G V     +   V K G+C ++ T+ I +  + 
Sbjct: 203 LFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLC 262

Query: 204 KAGMIDEAFR---------LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           + G +D A R          L  +V  G +P    Y  II G  ++G   DA     +  
Sbjct: 263 REGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAV 322

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            KG  P+   Y  LI    + G    A     +    GL P    ++ +  GL   G
Sbjct: 323 FKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQG 379



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 36/278 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +L+I    K G V +A  + +   A  C   +  YN+L+   C+      A  ++ RM
Sbjct: 402 TYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRM 461

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G  PD  TY  L+N  C +GK  E  E  + M +KG  P +   +++V  L  A  +
Sbjct: 462 WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKV 521

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------YSVCKL------ 186
             A  ++ +M  +G   D+ +F +L    CK G+++   +++      Y VC        
Sbjct: 522 NEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNI 581

Query: 187 ------------------------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                                   G   D  TY+++I    K G I + ++ L   +E  
Sbjct: 582 IVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKR 641

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
             P  + +  ++  +  + +  +A      M  KG  P
Sbjct: 642 FIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVP 679



 Score = 64.3 bits (155), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 5/238 (2%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           GF     TY  +V      G+  E ++ L EM +   N  + G    ++ + N G     
Sbjct: 35  GFKHTASTYKCIVQKLGHHGEFEEMEKLLSEMRENVNNALLEG--AYIEAMKNYGRKGKV 92

Query: 142 KQMVNKMIKQGFV---LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++ V+   +  F      + + N+++  + + G      ++Y  +   G+ +DV TY I 
Sbjct: 93  QEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIR 152

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +  K      A RLL N+ E G       Y  ++ G++  G+ D A   F EM  +  
Sbjct: 153 IKSFCKTARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCL 212

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P+   +  L+ +  + G   E+   L ++ + G+ P    F++   GL   G  D A
Sbjct: 213 CPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRA 270



 Score = 48.5 bits (114), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 3/160 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCEVK 66
           MK   L     +   +   F K G +D A ++F +    ++       YN ++ A  E  
Sbjct: 531 MKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQL 590

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
             + A  L   M   G  PD  TY ++++ +C  G + +  +FL E  +K F P +    
Sbjct: 591 NMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFG 650

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            ++  L     +  A  +++ M+++G V   ET N++ E 
Sbjct: 651 RVLNCLCVKDKVHEAVGIIHLMLQKGIV--PETVNTIFEA 688



 Score = 41.6 bits (96), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 9   KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           K Y++  +  T ++I+  F +   ++ A+++F+      C      Y  ++   C++   
Sbjct: 568 KQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNI 627

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP------- 121
              Y  +   + K F+P   T+  ++N  C   K+ EA   +  M  KG  P        
Sbjct: 628 TQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPETVNTIFE 687

Query: 122 -----VRGRDLLVQGLLNAGYL 138
                V    +LV+ LL  G++
Sbjct: 688 ADKKVVAAPKILVEDLLKKGHI 709


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 135/290 (46%), Gaps = 2/290 (0%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91
           L D AV +     +   +  V+ Y +L+  LC+      A  L+  M   G  P+   Y+
Sbjct: 130 LADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYS 189

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            L+  +C SG+  +  +   EMS+KG  P V     L+  L   G  + A  +++ M+++
Sbjct: 190 SLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRR 249

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   ++ T+N LI  +CK G V+  + +   + + G+  DV TY  LI  +S    +DEA
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309

Query: 212 FRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             LL  +V   +  KP    +  +I+G+   G+   AF   + M+  G   N   Y +LI
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLI 369

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               R  +  +A   + EMT +GL P S  + ++  G     + D AE +
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDL 419



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 162/357 (45%), Gaps = 41/357 (11%)

Query: 3   KTIELMKPYNLS-VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K +ELM     S + P  +  S +++ + K G  ++  +VF + +    +  V++Y  L+
Sbjct: 168 KAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLI 227

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            +LC+V     A+ ++  M+R+G  P+  TY +L+N  C  G ++EA   L++MS+KG  
Sbjct: 228 DSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVA 287

Query: 120 PP---------------------------VRGRDL----------LVQGLLNAGYLESAK 142
           P                            VRG+++          ++QGL + G +  A 
Sbjct: 288 PDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAF 347

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+   M + G +++L T+N LI  + +  +V   +E+   +  LGL  D  TY ILI   
Sbjct: 348 QVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGF 407

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   +D A  LL  + + G +P    Y P++  M  +G  + A   F+EM     P + 
Sbjct: 408 CKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMD-NNFPLDV 466

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             Y+ +I    + G    A   L  + + GLTP +  + +V +     G  + A  +
Sbjct: 467 VAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGV 523



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 4/272 (1%)

Query: 1   MWKTIELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           MW   E+++  N+ V P   T + +I+     G +  A +V        C   ++ YN L
Sbjct: 310 MWLLEEMVRGKNI-VKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLL 368

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  L  V     A  L+  M   G  PD  TY+IL+  +C   ++  A++ L  M D+G 
Sbjct: 369 IGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGI 428

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +     L+  +   G +E A+ + N+M    F LD+  ++++I   CK+G+++   E
Sbjct: 429 EPELFHYIPLLVAMCEQGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDLKTAKE 487

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  S+   GL  D  TY I+I   +K+G ++ A  +L  +   G  P  +++  +I+G  
Sbjct: 488 LLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYS 547

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            +G+ +       EM  K    +  + + L T
Sbjct: 548 TKGEINKVLELIREMITKNIALDSKIISTLST 579



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 6/279 (2%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C+   + Y  L+ ALC  +L   A  L+R M   G   D  TY  L+   C + ++ +A 
Sbjct: 111 CRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAV 170

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E + EM + G  P V     L+QG   +G  E   ++  +M ++G   D+  +  LI+++
Sbjct: 171 ELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSL 230

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK G+ +    +   + + GL  +V TY +LI  + K G + EA  +L  + E G  P  
Sbjct: 231 CKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDV 290

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH---PPNRPVYTMLITMCGRGGRFVEAANY 284
             Y  +IKG+    + D+A     EM ++G     PN   +  +I      GR  +A   
Sbjct: 291 VTYNTLIKGLSDVLEMDEAMWLLEEM-VRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQV 349

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              M E G       ++L+  GL     H + + +EL++
Sbjct: 350 RAMMEETGCMVNLVTYNLLIGGLLRV--HKVRKAMELMD 386



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 118/263 (44%), Gaps = 5/263 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI---RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           YN++L ALC       A AL+R M         P+  +Y +L+ A C+     +A   L+
Sbjct: 80  YNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLR 139

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G    V     L++GL +A  ++ A +++ +M + G   ++  ++SL++  CKSG
Sbjct: 140 SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSG 199

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E   +++  + + G+  DV  Y  LI ++ K G   +A  ++  +V  G +P    Y 
Sbjct: 200 RWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYN 259

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  M + G   +A     +M  KG  P+   Y  LI          EA   L EM   
Sbjct: 260 VLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRG 319

Query: 292 G--LTPISRCFDLVTDGLKNCGK 312
              + P    F+ V  GL + G+
Sbjct: 320 KNIVKPNVVTFNSVIQGLCDIGR 342



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 22/216 (10%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G+++ A  +FN+    N    V+ Y++++   C+      A  L++ ++ +G  PD  
Sbjct: 444 EQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAV 502

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+I++N +  SG M  A   L++M+  GF P V   D L+QG    G +    +++ +M
Sbjct: 503 TYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           I +   LD +  ++L  ++  S E +  ++           A++S   I  P        
Sbjct: 563 ITKNIALDSKIISTLSTSLVASNEGKALLQSLPD-----FSAEISKGNINSP-------- 609

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            E  ++LHN +        S  AP  + + +R + +
Sbjct: 610 QELMKVLHNAI--------SFKAPSNQQLHKRAKLN 637


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 147/315 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM+   +  +  T +++IE + +   ++ A ++F++      +  V +Y S++   C+
Sbjct: 246 LSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCK 305

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L   M  +  VP+  TY  L+N  C +G+M+ A+  + +M  KG +     
Sbjct: 306 FGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVI 365

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G ++ A ++ N M ++GF +D  T N +    C+S   E    +  ++ 
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V ++ ILI    K     EA RL   + + G  P    Y   I+   ++G+ +
Sbjct: 426 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A+   +EM+ +G  P+   YT LI      G    A     EM ++GL      + ++ 
Sbjct: 486 EAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVII 545

Query: 305 DGLKNCGKHDLAEKI 319
            GL   G+ D A K+
Sbjct: 546 SGLSKDGRADEAFKL 560



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 112/238 (47%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           +++N+L+   C+  +   A  L   M +KGF  D  T  I+ + +C S +  EA+  L  
Sbjct: 364 VIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLT 423

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M ++G  P V    +L+           A+++   M K+G    + T+N+ IE  CK G+
Sbjct: 424 MEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 483

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +E   ++   + + GL  D  TY  LI     +G +D A  L + + + G       Y  
Sbjct: 484 MEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTV 543

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           II G+ + G+ D+AF  + EM  +G  P+  +Y+ LI    + G  V     +V+  E
Sbjct: 544 IISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLENVVDRIE 601



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 134/333 (40%), Gaps = 35/333 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +++   K G V  A  + ++      +  V+ YN+LL    E+K   G   ++  M
Sbjct: 190 SWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLM 249

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     +  TY +L+  +  S K+ EA++   EM  KG  P V     ++      G +
Sbjct: 250 EKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNM 309

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + ++M ++  V +  T+ +LI   CK+GE++    M   +   G+  +   +  L
Sbjct: 310 KRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTL 369

Query: 199 IPAVSKAGMIDEAF-----------------------------------RLLHNLVEDGH 223
           +    K GMIDEA                                    RLL  + E G 
Sbjct: 370 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGV 429

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    ++ +I    +   F +A   F  M+ KG  P+   Y   I    + G+  EA  
Sbjct: 430 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYK 489

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            + EM E GL P +  +  + DG +  G  D A
Sbjct: 490 LINEMQERGLMPDTYTYTSLIDGERASGNVDRA 522



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 3/280 (1%)

Query: 46  FNCQQCVLLYNSLLFAL-CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
           FN    V  +  +LF +  + ++F  +  +     +KGF  D+R+    + A   SG M 
Sbjct: 111 FNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNME 170

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
              EFL++M D G    V     +V GL   G +  AK ++++++ +GF   + T+N+L+
Sbjct: 171 LCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLL 230

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
               +  +V    E+   + K  +  +V+TY +LI   S++  I+EA +L   +++ G +
Sbjct: 231 NGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIE 290

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P   +Y  II    + G    AF  F EM  +   PN   Y  LI    + G    A   
Sbjct: 291 PDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMM 350

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           + +M   G+      F+ + DG   C K  + E + L  +
Sbjct: 351 VNDMQSKGVDVNRVIFNTLMDGY--CKKGMIDEALRLQNI 388



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 122/270 (45%), Gaps = 2/270 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + +++  LC+      A AL+  ++ KGF P   TY  L+N +     +    E L  M 
Sbjct: 191 WTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGGVNEILSLME 250

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
               +  V    +L++    +  +E A+++ ++M+K+G   D+  + S+I   CK G ++
Sbjct: 251 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMK 310

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + +  L  +  TY  LI    KAG +  A  +++++   G      ++  ++
Sbjct: 311 RAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  ++G  D+A    + M+ KG   +     ++ +   R  R  EA   L+ M E G+ 
Sbjct: 371 DGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA 430

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
           P    F ++ D    C + + AE   L +V
Sbjct: 431 PNVVSFSILIDIY--CKEQNFAEARRLFKV 458



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   + S++I+ + K      A  +F           V+ YN+ +   C+      AY
Sbjct: 429 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 488

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            LI  M  +G +PD  TY  L++   +SG +  A E   EM   G N  V    +++ GL
Sbjct: 489 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 548

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
              G  + A ++ ++M K+G V D   ++SLI ++ K G
Sbjct: 549 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVG 587


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 144/301 (47%), Gaps = 8/301 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRRMIRK 81
           +I   G+   + +A+++F++    NC   V+ YN+++ +L E K     A +   RM + 
Sbjct: 335 LINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKD 394

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G VP   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L  A   + A
Sbjct: 395 GIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVA 454

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+   K G +   + ++  + KLG   DV  Y  L+  
Sbjct: 455 NELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTG 514

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           + +A  +DEAF L   + E+G  P  + +  I+ G+ R G    A   F++MK     P+
Sbjct: 515 MVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPD 574

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCGKHDLAEKI 319
              +  ++    R G F EAA  + EM+  G       +DL+T    L+  GK D  + +
Sbjct: 575 VVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQ-----YDLITYSSILEAVGKVDDCKMV 629

Query: 320 E 320
           E
Sbjct: 630 E 630



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 2/321 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +WKTI+ M   + +++P  LS I+   GK  +V+ A+ VF +     C+     YNS++ 
Sbjct: 137 VWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIIL 196

Query: 61  ALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L +       + L   M  +    PD  TY+ L++A+    +   A     EM + G  
Sbjct: 197 MLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQ 256

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  +    L+      G +E A  +V +M  +  +L + T+  LI  + KSG VE     
Sbjct: 257 PTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMT 316

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y ++ K G   DV     LI  + ++  + +A +L   +      P    Y  IIK +F 
Sbjct: 317 YKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCAPNVVTYNTIIKSLFE 376

Query: 240 -RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            +    +A  +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P   
Sbjct: 377 AKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPA 436

Query: 299 CFDLVTDGLKNCGKHDLAEKI 319
            +  + + L    ++D+A ++
Sbjct: 437 AYCSLINTLGVAKRYDVANEL 457



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 125/302 (41%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G V++A   +       C+  V+L N+L+  L        A  L   M
Sbjct: 296 TYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEM 355

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 P+  TY  ++ + + +   + EA  + + M   G  P      +L+ G      
Sbjct: 356 KLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNR 415

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI T+  +   +   E++  + +   C+    Y +
Sbjct: 416 VEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAV 475

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I    K G ++EA  L + + + G  P    Y  ++ GM R  + D+AF  F  M+  G
Sbjct: 476 MIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENG 535

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   + +++    R G    A     +M    + P    F+ +   L   G  + A 
Sbjct: 536 CTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAA 595

Query: 318 KI 319
           K+
Sbjct: 596 KL 597



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 84/161 (52%), Gaps = 3/161 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +  +++I+ FGK G ++ A+ +FN+     C   V  YN+L+  +   +    A++L 
Sbjct: 469 SARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLF 528

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R M   G  PD  ++ I++N    +G  + A E   +M +    P V   + ++  L  A
Sbjct: 529 RTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRA 588

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  E A +++ +M  +GF  DL T++S++E +   G+V+ C
Sbjct: 589 GLFEEAAKLMQEMSSKGFQYDLITYSSILEAV---GKVDDC 626



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 110/240 (45%), Gaps = 3/240 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +  S  T S++I+ + K   V+ A+ +  +        C   Y SL+  L   
Sbjct: 389 ERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVA 448

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++  +   G++ EA     EM   G  P V   
Sbjct: 449 KRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAY 508

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G++ A  ++ A  +   M + G   D+ + N ++  + ++G  +  +EM+  +  
Sbjct: 509 NALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKN 568

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV ++  ++  +S+AG+ +EA +L+  +   G +     Y+ I++ +   G+ DD
Sbjct: 569 STIKPDVVSFNTILGCLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAV---GKVDD 625


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 3/322 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS II   G   ++  AV +F +  A  CQ     YNS++
Sbjct: 138 MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTAHAYNSMI 197

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A   L EM D G 
Sbjct: 198 IMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGM 257

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +L+  L     +  A  +  +M  Q    D+ T+  LI  + K+G ++    
Sbjct: 258 QPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYN 317

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            ++ + + G   D      +I  + KAG +D+A +L   +      P    Y  IIK +F
Sbjct: 318 FFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALF 377

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             + +  +   +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 378 ESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 298 RCFDLVTDGLKNCGKHDLAEKI 319
             +  + D L    ++DLA ++
Sbjct: 438 AAYCSLIDALGKAKRYDLANEL 459



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALIRRMIRK 81
           +I   GK G +D+A+++F +     C   V+ YN+++ AL E K       +   RM   
Sbjct: 337 MINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGS 396

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   TY+IL++ +C + +  +A   L+EM +KGF P       L+  L  A   + A
Sbjct: 397 GISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 456

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+ + K+G ++  V+++  + +LG   +V  Y  L+  
Sbjct: 457 NELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSG 516

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +++AGM+DEA   +  + + G  P  + Y  I+  + + G  D A      MK     P+
Sbjct: 517 LARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPD 576

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCGKHD 314
              Y  ++      G F EAA  + EM  +G       +DL+T    L+  GK D
Sbjct: 577 AVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFD-----YDLITYSSILEAIGKVD 626



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 134/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G  D+A+ + N+      Q    +Y  L+  L ++   HGA  L   M
Sbjct: 228 TYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEM 287

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+     +G++ EA  F  EM  +G  P     + ++  L  AG L
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRL 347

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKI 197
           + A ++  +M     +  + T+N++I+ + +S      +  ++   K  G+     TY I
Sbjct: 348 DDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSI 407

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K    ++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 408 LIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENC 467

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +  VY ++I   G+ GR  +A +   EM  +G TP    ++ +  GL   G  D A
Sbjct: 468 GSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEA 526



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 127/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G +D A   F++     C+   +L N+++  L +      A  L   M
Sbjct: 298 TYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEM 357

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P   TY  ++ A + S  ++ E   + + M   G +P      +L+ G      
Sbjct: 358 ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNR 417

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 418 TEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAV 477

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  L   +   G  P    Y  ++ G+ R G  D+A      M+  G
Sbjct: 478 MIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHG 537

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M +  + P +  ++ V   L + G  + A 
Sbjct: 538 CIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAA 597

Query: 318 KI 319
           K+
Sbjct: 598 KL 599



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S SP T S++I+ F K    + A+ +  +        C   Y SL+ AL + 
Sbjct: 391 ERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 450

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A +   EM+  G  P V   
Sbjct: 451 KRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAY 510

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  AG L+ A   + +M   G + D+ ++N ++  + K+G  +  + M  ++ +
Sbjct: 511 NALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQ 570

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             +  D  +Y  ++ A+S AGM +EA +L+  +   G       Y+ I++ + +  Q
Sbjct: 571 SAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIGKVDQ 627



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-----PVRGRDLLVQGLLN 134
           ++ +  D  TY  L+       +  E  + +QEM     NP     P+   D+ ++ L N
Sbjct: 112 KRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVR---NPVCVVTPMELSDI-IRMLGN 167

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVS 193
           A  +  A  +  ++  +        +NS+I  +   GE E   E+Y  +   G C  D  
Sbjct: 168 AKMISKAVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTV 227

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI A  K G  D A  LL+ + ++G +P   +Y  ++  +F+      A   F EM
Sbjct: 228 TYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEM 287

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + +   P+   YT LI   G+ GR  EA N+  EM   G  P +   + + + L   G+ 
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRL 347

Query: 314 DLAEKI 319
           D A K+
Sbjct: 348 DDAIKL 353



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 112/263 (42%), Gaps = 2/263 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMRE 105
           N +     Y +L+  L  V+ +   + +I+ M+R    V      + ++    ++  + +
Sbjct: 114 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISK 173

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLI 164
           A     ++  +   P     + ++  L++ G  E   ++ N+M  +G    D  T+++LI
Sbjct: 174 AVAIFYQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALI 233

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              CK G  +  + +   +   G+      Y +L+  + K   +  A  L   +     +
Sbjct: 234 SAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCR 293

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I+G+ + G+ D+A+ FF EM+ +G  P+  +   +I   G+ GR  +A   
Sbjct: 294 PDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKL 353

Query: 285 LVEMTEMGLTPISRCFDLVTDGL 307
             EM  +   P    ++ +   L
Sbjct: 354 FEEMETLRCIPSVVTYNTIIKAL 376


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 2/296 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L ++P   T + ++  +   G  +NA+++ N+  ++     ++ YN L+  LC+      
Sbjct: 579 LGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEK 638

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
             +++  M+  G+VP    +  L+ A+  S K     +  +++ D G N      + L+ 
Sbjct: 639 VISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLIT 698

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G  + A  ++ +M+ +G   D+ T+N+LI   C    VE     Y  +   G+  
Sbjct: 699 VLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISP 758

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +++TY  L+  +S  G++ +A +L+  + E G  P  + Y  ++ G  R G   D+   +
Sbjct: 759 NITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLY 818

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            EM  KG  P    Y +LI    + G+  +A   L EM   G  P S  +D++  G
Sbjct: 819 CEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICG 874



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 141/292 (48%), Gaps = 5/292 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +  ++P     +  T + +I  + KH  +D+   ++ +         V+  +S+L+ 
Sbjct: 226 WDGLRDLQP-----TVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYG 280

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A  L+R M   G  P+  +Y  +++A   SG++ EA     +M  +G +  
Sbjct: 281 LCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISID 340

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +     ++ GL  AG  + A++M   ++K   V +  T+ +L++  CK G+VEF   +  
Sbjct: 341 LVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQ 400

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K  +  +V T+  +I   +K GM+++A  +L  +V+    P   +YA ++ G FR G
Sbjct: 401 KMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTG 460

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           Q + A  F+ EMK  G   N  ++ +L+    R G   EA + + ++   G+
Sbjct: 461 QHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGI 512



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 137/292 (46%), Gaps = 6/292 (2%)

Query: 34  DNAVEVFNKCTA------FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           D+   V N C         + Q  V+ + +L+ A C+ +     ++L  +MI  G +PD 
Sbjct: 212 DDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDV 271

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            T + ++   C  GK+ EA   L+EM + G +P       ++  LL +G +  A    ++
Sbjct: 272 VTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQ 331

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M+ +G  +DL    ++++ + K+G+ +   EM+ ++ KL L  +  TY  L+    K G 
Sbjct: 332 MVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGD 391

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           ++ A  +L  + ++   P    ++ II G  ++G  + A     +M      PN  VY +
Sbjct: 392 VEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAI 451

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           L+    R G+   AA +  EM   GL   +  FD++ + LK  G    A+ +
Sbjct: 452 LLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGGMKEAQSL 503



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 36/334 (10%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +++ + K G    A+ V  + T  + Q  V+ YN+L   L  +  +    ++  RMI 
Sbjct: 520 SSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-PKSVFSRMIE 578

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD  TY  ++N +   GK   A + L EM   G  P +   ++L+ GL   G +E 
Sbjct: 579 LGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEK 638

Query: 141 AKQMVNKMIKQGFV-----------------------------------LDLETFNSLIE 165
              ++++M+  G+V                                   L+   +N+LI 
Sbjct: 639 VISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLIT 698

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
            +C+ G  +    +   +   G+ AD+ TY  LI        +++AF     ++  G  P
Sbjct: 699 VLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISP 758

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
             + Y  +++G+   G   DA    SEM+ +G  PN   Y +L++  GR G   ++    
Sbjct: 759 NITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLY 818

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EM   G  P +  ++++       GK   A ++
Sbjct: 819 CEMITKGFIPTTGTYNVLIQDYAKAGKMRQAREL 852



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 134/321 (41%), Gaps = 41/321 (12%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II  + K G+++ AVEV  K    N    V +Y  LL           A    + M
Sbjct: 413 TFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEM 472

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFL---------------------------- 110
              G   +   + IL+N    SG M+EAQ  +                            
Sbjct: 473 KSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNE 532

Query: 111 -------QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                  QEM++K     V   + L +GLL  G  E  K + ++MI+ G   D  T+NS+
Sbjct: 533 SAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-PKSVFSRMIELGLTPDCVTYNSV 591

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           + T    G+ E  +++   +   G+  ++ TY ILI  + K G I++   +LH ++  G+
Sbjct: 592 MNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGY 651

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P P ++  ++K   R  + D       ++   G   N+ VY  LIT+  R G   +A  
Sbjct: 652 VPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANV 711

Query: 284 YLVEMTEMGLTPISRCFDLVT 304
            L EM   G++      D+VT
Sbjct: 712 VLTEMVIKGISA-----DIVT 727



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 21/286 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN++++  C+  L    + L+  M++KG   D  T  ILV  +C  G ++ A+  +  + 
Sbjct: 78  YNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLV 137

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G      G + LV G    G +  A  +V    K G   D+ T+N+L+   CK G++ 
Sbjct: 138 GGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLA 197

Query: 175 FCVEMYYSVCKL------GLCAD---------------VSTYKILIPAVSKAGMIDEAFR 213
               +   +         G+  D               V T+  LI A  K   ID+ F 
Sbjct: 198 KAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFS 257

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++  G  P     + I+ G+ R G+  +A     EM   G  PN   YT +I+   
Sbjct: 258 LYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISALL 317

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + GR +EA N+  +M   G++        + DGL   GK   AE++
Sbjct: 318 KSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEM 363



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 139/326 (42%), Gaps = 16/326 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK Y +  +  T +++I    K G ++  + V ++  A       +++  LL A    + 
Sbjct: 611 MKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRK 670

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                 + ++++  G   ++  Y  L+   C  G  ++A   L EM  KG +  +   + 
Sbjct: 671 ADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNA 730

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++G     ++E A    ++M+  G   ++ T+N+L+E +  +G +    ++   + + G
Sbjct: 731 LIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERG 790

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  + +TY IL+    + G   ++ +L   ++  G  P    Y  +I+   + G+   A 
Sbjct: 791 LVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQAR 850

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCG--------RGGRFV------EAANYLVEMTEMGL 293
              +EM  +G  PN   Y +LI  CG           R +      EA   L EM E G 
Sbjct: 851 ELLNEMLTRGRIPNSSTYDVLI--CGWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGH 908

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P       ++      GK D A+++
Sbjct: 909 VPSESTLMYISSNFSAPGKRDDAKRL 934



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 131/284 (46%), Gaps = 1/284 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NL  +  T + +++   K G V+ A  V  K    +    V+ ++S++    +  + + A
Sbjct: 371 NLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKA 430

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             ++R+M++   +P+   YAIL++ +  +G+   A  F +EM   G        D+L+  
Sbjct: 431 VEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNN 490

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  +G ++ A+ ++  ++ +G  LD+  ++SL++   K G     + +   + +  +  D
Sbjct: 491 LKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFD 550

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  Y  L   + + G   E   +   ++E G  P    Y  ++   F +G+ ++A    +
Sbjct: 551 VVAYNALTKGLLRLGKY-EPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLN 609

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           EMK  G  PN   Y +LI    + G   +  + L EM  +G  P
Sbjct: 610 EMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVP 653



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 131/328 (39%), Gaps = 33/328 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAV----EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           T + ++  F K GL D       E+  K   F+   C    N L+   C++ L   A  +
Sbjct: 77  TYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTC----NILVKGYCQIGLVQYAEWI 132

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  ++  G   D      LV+ +C  G +  A + +++    G  P +   + LV     
Sbjct: 133 MGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCK 192

Query: 135 AGYLESAKQMVNKMIKQGFVLDLE-----------------------TFNSLIETICKSG 171
            G L  A+ +VN+++  GF  D E                       T+ +LI   CK  
Sbjct: 193 RGDLAKAESVVNEIL--GFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHR 250

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++    +Y  +   G+  DV T   ++  + + G + EA  LL  +   G  P    Y 
Sbjct: 251 GIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYT 310

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            II  + + G+  +AF   S+M ++G   +  + T ++    + G+  EA      + ++
Sbjct: 311 TIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKL 370

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            L P    +  + DG    G  + AE +
Sbjct: 371 NLVPNCVTYTALLDGHCKVGDVEFAETV 398



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 119/283 (42%), Gaps = 1/283 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A E+F      N     + Y +LL   C+V     A  ++++M ++  +P+  
Sbjct: 353 KAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVV 412

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T++ ++N +   G + +A E L++M      P V    +L+ G    G  E+A     +M
Sbjct: 413 TFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEM 472

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              G   +   F+ L+  + +SG ++    +   +   G+  DV  Y  L+    K G  
Sbjct: 473 KSWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNE 532

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
             A  ++  + E   +     Y  + KG+ R G+++     FS M   G  P+   Y  +
Sbjct: 533 SAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPK-SVFSRMIELGLTPDCVTYNSV 591

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +      G+   A + L EM   G+ P    ++++  GL   G
Sbjct: 592 MNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTG 634



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 140/354 (39%), Gaps = 56/354 (15%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++ + + GLV  A  +             +  N+L+   CEV L   A  L+   
Sbjct: 112 TCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDG 171

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE------------MSDKGFNPPVRGRD 126
            + G  PD  TY  LVNA+C  G + +A+  + E            ++D G       RD
Sbjct: 172 WKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRD 231

Query: 127 L----LVQGLLNAGY-----LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           L    +    L A Y     ++    +  +MI  G + D+ T +S++  +C+ G++    
Sbjct: 232 LQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAA 291

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   +  +GL  +  +Y  +I A+ K+G + EAF     +V  G      L   ++ G+
Sbjct: 292 MLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGL 351

Query: 238 FRRGQFDDA--------------FCFFSEMKIKGH---------------------PPNR 262
           F+ G+  +A               C      + GH                      PN 
Sbjct: 352 FKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNV 411

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++ +I    + G   +A   L +M +M + P    + ++ DG    G+H+ A
Sbjct: 412 VTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAA 465



 Score = 45.4 bits (106), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 8/195 (4%)

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP    +  L+  + +SG + + +    EM   G  P V   +LLV  L   G L  A 
Sbjct: 6   LVPSLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLAL 65

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             +     +  V D  T+N+++   CK G  +    +   + K G+C D  T  IL+   
Sbjct: 66  GYL-----RNSVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGY 120

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            + G++  A  ++ NLV  G  P  ++    ++ G    G    A     +    G  P+
Sbjct: 121 CQIGLVQYAEWIMGNLV-GGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPD 179

Query: 262 RPVYTMLIT-MCGRG 275
              Y  L+   C RG
Sbjct: 180 IVTYNTLVNAFCKRG 194


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 1/278 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN++L    +      AY+    M+ +G +PD  TY+ ++ A C +  M +A E L 
Sbjct: 201 VVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLN 260

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P     + ++ G  ++G  + A   + KM   G   ++ T++SL+  +CK+G
Sbjct: 261 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNG 320

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 +++ S+ K GL  D++TY+ L+   +  G + E   LL  +V +G +P   ++ 
Sbjct: 321 RSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFN 380

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    ++ + D A   FS+M+  G  PN   Y  +I +  + G   +A  Y  +M + 
Sbjct: 381 ILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDE 440

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           GLTP    +  +  GL  C K D AE++ +LE+  R +
Sbjct: 441 GLTPNIIVYTSLIHGLCTCDKWDKAEEL-ILEMLDRGI 477



 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 35/339 (10%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T++ M+   +  +  T S ++    K+G    A ++F+  T    +  +  Y +LL    
Sbjct: 293 TLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA 352

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW-------------------------- 97
                   +AL+  M+R G  PD   + IL+ A+                          
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 98  ---------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
                    C SG + +A  + ++M D+G  P +     L+ GL      + A++++ +M
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + +G  L+   FNS+I++ CK G V    +++  + ++G+  D+ TY  LI     AG +
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA +LL ++V  G KP    Y  +I G  R  + DDA   F EM   G  PN   Y ++
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 592

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +       R   A    V +T+ G       ++++  GL
Sbjct: 593 LQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 8/308 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  F K G  D A   +++         V+ Y+S++ ALC+ +    A  ++  M++ G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD  TY  +++ +CSSG+ +EA   L++M   G  P V     L+  L   G    A+
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTYKILI 199
           ++ + M K+G   D+ T+ +L++     G +   VEM+  +    + G+  D   + ILI
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGAL---VEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A +K   +D+A  +   + + G  P    Y  +I  + + G  DDA  +F +M  +G  
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           PN  VYT LI       ++ +A   ++EM + G+   +  F+ + D   +C +  + E  
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID--SHCKEGRVIESE 501

Query: 320 ELLEVSLR 327
           +L ++ +R
Sbjct: 502 KLFDLMVR 509



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 135/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV N           + YNS+L   C       A   +++M
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY+ L+N  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   D   FN LI    K  +V+  + ++  + + GL  +V  Y  +
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +D+A      ++++G  P   +Y  +I G+    ++D A     EM  +G 
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   +  +I    + GR +E+      M  +G+ P    ++ + DG    GK D A K
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 319 I 319
           +
Sbjct: 538 L 538



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 124/268 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ YN+L+   C       A  L+  M+  G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL +     +AK
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + K G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +DEA  L      +G  P    Y+ + + +  +G  ++    F  M+  G   + 
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 727 RMLNSIVRKLLQRGDITRAGTYLFMIDE 754



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 35/331 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + L+ +      +I+   K G VD+A+  F +         +++Y SL+  LC    
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDK 461

Query: 68  FHGAYALIRR-----------------------------------MIRKGFVPDKRTYAI 92
           +  A  LI                                     M+R G  PD  TY  
Sbjct: 462 WDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNT 521

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C +GKM EA + L  M   G  P +     L+ G      ++ A  +  +M+  G
Sbjct: 522 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ T+N +++ +  +       E+Y S+ K G   ++STY I++  + K  + DEA 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+  NL     +     +  +I  + + G+ D+A   F+     G  P+   Y+++    
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              G   E  +  + M E G +  SR  + +
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSI 732



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 46/312 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMR----------- 104
           AL +V     A A+ R  RM R G     P   TYAIL+   C +G++            
Sbjct: 61  ALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK 120

Query: 105 -----EAQEF--------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                +A  F                    L+ M++ G  P V   + L++GL +    +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A ++++ M      G   D+ ++N+++    K G+ +     Y+ +   G+  DV TY 
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYS 240

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I A+ KA  +D+A  +L+ +V++G  P    Y  I+ G    GQ  +A     +M+  
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 300

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  PN   Y+ L+    + GR  EA      MT+ GL P    +  +  G    G   L 
Sbjct: 301 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA--LV 358

Query: 317 EKIELLEVSLRS 328
           E   LL++ +R+
Sbjct: 359 EMHALLDLMVRN 370



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 2/161 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T ++I++          A E++   T    Q  +  YN +L  LC+  L   A 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + +       + RT+ I++ A    G+M EA++     S  G  P VR   L+ + L
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +  G LE    +   M + G   D    NS++  + + G++
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++I+    K+ L D A+ +F      + Q     +N ++ AL +      A  L   
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
               G VPD RTY+++       G + E  +    M + G +   R  + +V+ LL  G 
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 741

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +  A   +  + ++ F L+  T + L+E+
Sbjct: 742 ITRAGTYLFMIDEKHFSLEASTASFLLES 770



 Score = 39.7 bits (91), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +   V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTY 95

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI    +AG +D  F  L N+V+ G +     + P++KG+    +  DA       M 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE---MGLTPISRCFDLVTDGLKNCG 311
             G  P+   Y  L+       R  EA   L  M +    G  P    ++ V +G    G
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 312 KHDLA 316
             D A
Sbjct: 216 DSDKA 220


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 139/309 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E MK   +S    T S++I  F K G V+  + +  +    N +  ++ Y+SL   L
Sbjct: 346 KVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGL 405

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ +L   +  + R +   G+  D+  Y+IL+  +C  G +  A + ++EM      P  
Sbjct: 406 CKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDP 465

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + LV G    G   +A +  N M++ G +  + T N +I+  C+ G VE  + +   
Sbjct: 466 SNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNE 525

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  ++ TY  +I  + K    + A  L   +++    P   +Y+ +I G  ++  
Sbjct: 526 MQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSN 585

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
              A   ++ M   G  P+   YT+LI +     R  EA N   +MTE G+TP    +  
Sbjct: 586 SQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTS 645

Query: 303 VTDGLKNCG 311
           V  G    G
Sbjct: 646 VIAGFCRIG 654



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 141/347 (40%), Gaps = 35/347 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE MK  N+  S  + S +     K  L D ++++F    A   +     Y+ L+   C 
Sbjct: 383 IEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCM 442

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+ L+  M+R    PD   +  LV+ +C  G    A EF   M + G  P +  
Sbjct: 443 QGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIAT 502

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM----- 179
            ++++      G +E A  ++N+M  QG   +L T+N++I  +CK  + E  +E+     
Sbjct: 503 CNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLML 562

Query: 180 ------------------------------YYSVCKLGLCADVSTYKILIPAVSKAGMID 209
                                         Y  + K+G+  D+  Y ILI  +     + 
Sbjct: 563 KRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMC 622

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA+ L   + E+G  P    Y  +I G  R G    A+  F+EM  +GH P    YT L+
Sbjct: 623 EAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLV 682

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +  R   A   + EM   G+TP    ++++    +  G  D A
Sbjct: 683 DGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKA 729



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 138/313 (44%), Gaps = 6/313 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I L  P + + S     L+I+ F  + +++NAV+VF +      +      N LL  L E
Sbjct: 167 ILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAE 226

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG------KMREAQEFLQEMSDKGF 118
                   +L   M   G  P+  TY I++N +C           R+A E L+EM   G 
Sbjct: 227 ANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGE 286

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           +P V      + GL   GY+ESA   V  +I    ++++  +N++I  +CK GE++  ++
Sbjct: 287 SPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALK 346

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +   G+  DV TY ILI    K G +++   L+  +     +P    Y+ +  G+ 
Sbjct: 347 VLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLC 406

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++   D +   F ++   G+  ++  Y++LI      G    A   + EM    L P   
Sbjct: 407 KKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPS 466

Query: 299 CFDLVTDGLKNCG 311
            F+ +  G    G
Sbjct: 467 NFESLVHGFCKMG 479



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 121/293 (41%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M   NL+  P     ++  F K GL  NA+E FN          +   N ++ A 
Sbjct: 451 KLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAH 510

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M  +G  P+  TY  ++N  C   K   A E    M  +   P V
Sbjct: 511 CREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSV 570

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G       + A  +  +M+K G   D+  +  LI  +C    +     ++  
Sbjct: 571 VVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKK 630

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+  D  +Y  +I    + G + +A+ L + +++ GH P    Y  ++ G  +  +
Sbjct: 631 MTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNR 690

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            D A     EMK KG  P+   Y +LI    R G   +A   L EM E G+ P
Sbjct: 691 IDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLP 743



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 2/276 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++ ++ LC V     A   +R +I    + +   Y  +++  C  G++ EA + L+
Sbjct: 290 VVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLE 349

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G +P V    +L+ G    G +E    ++ +M        L +++SL   +CK  
Sbjct: 350 EMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKR 409

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             +  ++++  +   G   D + Y ILI      G +D A +L+  +V +   P PS + 
Sbjct: 410 LSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFE 469

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G  + G + +A  FF+ M   G  P+     ++I    R GR  EA N + EM   
Sbjct: 470 SLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQ 529

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           G+ P    ++ V + L  C +      +EL  + L+
Sbjct: 530 GIFPNLFTYNAVINRL--CKERKSERALELFPLMLK 563



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 87/192 (45%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           LM   N+  S    S +I+ F K      A+ ++ +         ++ Y  L+  LC   
Sbjct: 560 LMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRS 619

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               AY L ++M   G  PDK +Y  ++  +C  G MR+A     EM  +G  P V    
Sbjct: 620 RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYT 679

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            LV G      ++ A  ++++M ++G   D+ T+N LI    + G ++  +EM   + + 
Sbjct: 680 SLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKEN 739

Query: 187 GLCADVSTYKIL 198
           G+  D  TY +L
Sbjct: 740 GVLPDHMTYMML 751


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ FG  G+V+  + V+ +      +  +  YN L+  L   K    A  +   M    
Sbjct: 185 LIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGK 244

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  ++  +C  GK R+A E L+ M  +   P       L+Q     G  +S  
Sbjct: 245 IGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCL 304

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + ++M ++G  +    ++ +I  +CK G+      ++ ++   G  A+V+ Y  LI + 
Sbjct: 305 GLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSN 364

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           +K G + EA  L   + ++G +P    Y  I+  + + G+ D+A  +      KG   N 
Sbjct: 365 AKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNA 424

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             Y+ LI   G+ GR  EA     EM + G  P S C++ + D L  CGK D A
Sbjct: 425 MFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEA 478



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 143/312 (45%), Gaps = 1/312 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L + P   SL+I    K G       VF    +  C+  V +Y +L+ +  +   
Sbjct: 310 MDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGN 369

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L +RM ++G  PD+ TY ++VN+ C SG++ EA E+++  S KG          
Sbjct: 370 MGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSS 429

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL  +G ++ A+++  +M+K+G   D   +N+LI+ + K G+++  + +   +   G
Sbjct: 430 LIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDG 489

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
               V TY ILI  + +    +EA  L   +++ G  P  + +  +  G+   G+   A 
Sbjct: 490 CDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARAC 549

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G  P      M+  +C + GR  EA      + + G     R   ++ + L
Sbjct: 550 KILDEMAPMGVIPETAFDDMINILC-KAGRIKEACKLADGIVDRGREIPGRVRTVLINAL 608

Query: 308 KNCGKHDLAEKI 319
           +  G  DLA K+
Sbjct: 609 RKAGNADLALKL 620



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 140/347 (40%), Gaps = 35/347 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  S  + + ++        +++A  VF           V+ YN+++   CEV  
Sbjct: 205 MKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGK 264

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+  ++ M  +   PDK TY  L+ A  + G          EM +KG   P     L
Sbjct: 265 TRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSL 324

Query: 128 LVQGLL---------------------------------NA--GYLESAKQMVNKMIKQG 152
           ++ GL                                  NA  G +  A  +  +M K+G
Sbjct: 325 VIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEG 384

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D  T+  ++ ++CKSG ++  +E        G+  +   Y  LI  + K+G +DEA 
Sbjct: 385 LEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAE 444

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+ + +V+ G  P    Y  +I  + + G+ D+A      M++ G       YT+LIT  
Sbjct: 445 RIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGL 504

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            R  R  EA      M + G+TP +  F  ++ GL   GK   A KI
Sbjct: 505 FREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKI 551



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 2/269 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y SL+  L    +     ++  +    G +    +   L+ ++ + G + E     + M 
Sbjct: 147 YVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMK 206

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G  P +   + LV GL+N+ ++ESA+++   M       D+ T+N++I+  C+ G+  
Sbjct: 207 ENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTR 266

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E   ++    +  D  TY  LI A    G  D    L H + E G +  P +Y+ +I
Sbjct: 267 KAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVI 326

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ + G+  + +  F  M  KG   N  +YT LI    + G   EA      M + GL 
Sbjct: 327 GGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLE 386

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P    + ++ + L   G+ D  E +E +E
Sbjct: 387 PDEVTYGVIVNSLCKSGRLD--EALEYME 413



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 1/217 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++V+    S +I+  GK G VD A  +F +     C      YN+L+ AL +      A 
Sbjct: 420 VAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEAL 479

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL +RM   G      TY IL+       +  EA      M DKG  P       L  GL
Sbjct: 480 ALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGL 539

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             +G +  A +++++M   G V+    F+ +I  +CK+G ++   ++   +   G     
Sbjct: 540 CLSGKVARACKILDEMAPMG-VIPETAFDDMINILCKAGRIKEACKLADGIVDRGREIPG 598

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
               +LI A+ KAG  D A +L+ + +  G+    S+
Sbjct: 599 RVRTVLINALRKAGNADLALKLMRSKIGIGYDRMGSV 635



 Score = 47.0 bits (110), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 35/199 (17%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++ +  +LE + SLI+ +  +G ++    ++    ++GL   V +   LI +    GM++
Sbjct: 137 QKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVE 196

Query: 210 EAFRLLHNLVEDGHKPF---------------------------------PSL--YAPII 234
           E   +   + E+G +P                                  P +  Y  +I
Sbjct: 197 EVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMI 256

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           KG    G+   AF     M+++   P++  Y  LI  C   G F        EM E GL 
Sbjct: 257 KGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLE 316

Query: 295 PISRCFDLVTDGLKNCGKH 313
                + LV  GL   GK 
Sbjct: 317 IPPHVYSLVIGGLCKDGKR 335


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 130/288 (45%), Gaps = 35/288 (12%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT ++I   F K G++  A  +F+       +  V+ YNS++ A C +     A  +   
Sbjct: 237 QTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDL 296

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MIRKG +P+  TY  L++ WC +  M +A  FL EM + G +P V     L+ G   AG 
Sbjct: 297 MIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGK 356

Query: 138 LESAKQMVNKMIKQGFVLDLET-----------------------------------FNS 162
             +AK++   M K G + DL+T                                   ++ 
Sbjct: 357 PVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSI 416

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           ++  +C SG++   +E++  +   G+  DV TY I+I  + K G++D+A  LL  + E+G
Sbjct: 417 ILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG 476

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
             P    Y   ++G+ RR +   +  +   MK KG   N     +LI 
Sbjct: 477 CPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLIN 524



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 143/335 (42%), Gaps = 35/335 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N ++     S +++   K G+V  A+++F++ T    Q  +  YN L+  LC    
Sbjct: 157 MEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDR 216

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAI----------------------------------- 92
           +  A  L+  M+RKG +PD +T+ +                                   
Sbjct: 217 WKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNS 276

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++ A C   +M++A E    M  KG  P +   + L+ G      +  A   + +M+  G
Sbjct: 277 IIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNG 336

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+++LI   CK+G+     E+++ + K G   D+ T  I++  + K     EA 
Sbjct: 337 LDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAM 396

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   L +        +Y+ I+ GM   G+ +DA   FS +  KG   +   Y ++I   
Sbjct: 397 SLFRELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGL 456

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            + G   +A + L++M E G  P    +++   GL
Sbjct: 457 CKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 491



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 129/308 (41%), Gaps = 2/308 (0%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           + + V P   T + I+      G V  A+   +       +       +++  LC+V   
Sbjct: 88  FKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHS 147

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A + +++M  +    D   Y+ +V+  C  G + EA +   +M+ KG  P +   + L
Sbjct: 148 SAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCL 207

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + GL N    + A  ++  M+++G + D++TFN +     K+G +     ++  +  +G+
Sbjct: 208 IHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGI 267

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V TY  +I A      + +A  +   ++  G  P    Y  +I G       + A  
Sbjct: 268 EHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMY 327

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
           F  EM   G  P+   ++ LI    + G+ V A      M + G  P  +   ++ DGL 
Sbjct: 328 FLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLF 387

Query: 309 NCGKHDLA 316
            C  H  A
Sbjct: 388 KCHFHSEA 395



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 133/305 (43%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   II    K G    A+    K    NC   V  Y++++  LC+  +   A  L  +M
Sbjct: 133 TRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQM 192

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  P+  TY  L++  C+  + +EA   L  M  KG  P V+  +++    L  G +
Sbjct: 193 TGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMI 252

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK + + M   G   ++ T+NS+I   C   +++  +E++  + + G   ++ TY  L
Sbjct: 253 SRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSL 312

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    +   +++A   L  +V +G  P    ++ +I G  + G+   A   F  M   G 
Sbjct: 313 IHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQ 372

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+     +++    +     EA +   E+ +M        + ++ +G+ + GK  L + 
Sbjct: 373 LPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSIILNGMCSSGK--LNDA 430

Query: 319 IELLE 323
           +EL  
Sbjct: 431 LELFS 435



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 101/234 (43%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ +    +    +  V  +N ++  LC +      ++++  M + G  P   T+  +VN
Sbjct: 45  AISLIKHMSYIGVKPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVN 104

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C  G + +A  F+  + D G+      R  ++ GL   G+  +A   + KM +Q   L
Sbjct: 105 GLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNL 164

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+  ++++++ +CK G V   ++++  +   G+  ++ TY  LI  +       EA  LL
Sbjct: 165 DVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLL 224

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            N++  G  P    +  I     + G    A   FS M   G   N   Y  +I
Sbjct: 225 ANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSII 278



 Score = 68.9 bits (167), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 111/287 (38%), Gaps = 35/287 (12%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD A++ ++K        CV  +N L   + ++K +  A +LI+ M   G  P+  T+ I
Sbjct: 7   VDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNI 66

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N  C                    N  V G  +L  GL               M K G
Sbjct: 67  VINCLCR------------------LNHTVFGFSVL--GL---------------MFKIG 91

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
               + TF +++  +C  G V   +     +  +G  +D  T   +I  + K G    A 
Sbjct: 92  VEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAAL 151

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
             L  + E       + Y+ ++ G+ + G   +A   FS+M  KG  PN   Y  LI   
Sbjct: 152 SYLKKMEEQNCNLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGL 211

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               R+ EAA  L  M   G+ P  + F+++       G    A+ I
Sbjct: 212 CNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSI 258



 Score = 42.7 bits (99), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 69/174 (39%)

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           N   ++ A    +KM+       ++ FN L   + K       + +   +  +G+  +VS
Sbjct: 3   NVKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVS 62

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ I+I  + +       F +L  + + G +P    +  I+ G+   G    A  F   +
Sbjct: 63  THNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHL 122

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           K  G+  +R     +I    + G    A +YL +M E         +  V DGL
Sbjct: 123 KDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGL 176


>gi|388490582|gb|AFK33357.1| unknown [Medicago truncatula]
          Length = 389

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 139/301 (46%), Gaps = 1/301 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++IE   K   VD A+++ +   A   +  ++ YN LL  LC+      A  L + +
Sbjct: 26  TYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSYNVLLTGLCKEGRTEDAIKLFKEL 85

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KGF P   ++ IL+ + C  G+  EA E +  M   G  P V   ++L+  L   G +
Sbjct: 86  PEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDRDGQAPSVVTYNVLITSLSIDGRI 145

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++++M K GF +   ++N +I  +CK G V+  V+    +       +  TY   
Sbjct: 146 EQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNGGTYNA- 204

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + GM+ EAF +L  L +  + P    Y  +I  + R+G    AF    EM + G 
Sbjct: 205 IALLCERGMVKEAFLILERLGKKQNYPISDFYKNVITLLCRKGSTYPAFQILYEMTVHGF 264

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y+ LI    R G   EA      + E G  P    ++ +  GL    + D++ +
Sbjct: 265 TPDSYTYSSLIRGMCREGMLDEALQIFGILEEHGYVPHVDNYNALILGLCKSQRIDMSIE 324

Query: 319 I 319
           I
Sbjct: 325 I 325



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 125/280 (44%), Gaps = 34/280 (12%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           ++ R+I+KG VP+  TY+IL+ A      + EA + L ++  KG  P +   ++L+ GL 
Sbjct: 11  ILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSYNVLLTGLC 70

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G  E A ++  ++ ++GF   + + N L+ ++C  G  +   E+   + + G    V 
Sbjct: 71  KEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDRDGQAPSVV 130

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD--------- 244
           TY +LI ++S  G I++AF++L  + + G K   + Y PII  + + G+ D         
Sbjct: 131 TYNVLITSLSIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDLVVQCLDQM 190

Query: 245 -------------------------DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
                                    +AF     +  K + P    Y  +IT+  R G   
Sbjct: 191 INRRFHLNGGTYNAIALLCERGMVKEAFLILERLGKKQNYPISDFYKNVITLLCRKGSTY 250

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            A   L EMT  G TP S  +  +  G+   G  D A +I
Sbjct: 251 PAFQILYEMTVHGFTPDSYTYSSLIRGMCREGMLDEALQI 290



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 1/221 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M      VS  + + II    K G VD  V+  ++            YN++   
Sbjct: 149 FKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDLVVQCLDQMINRRFHLNGGTYNAIAL- 207

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LCE  +   A+ ++ R+ +K   P    Y  ++   C  G    A + L EM+  GF P 
Sbjct: 208 LCERGMVKEAFLILERLGKKQNYPISDFYKNVITLLCRKGSTYPAFQILYEMTVHGFTPD 267

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L++G+   G L+ A Q+   + + G+V  ++ +N+LI  +CKS  ++  +E++ 
Sbjct: 268 SYTYSSLIRGMCREGMLDEALQIFGILEEHGYVPHVDNYNALILGLCKSQRIDMSIEIFQ 327

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
            +   G   +  TY I + A++    ++ A  LL+ L   G
Sbjct: 328 MMVNKGCMPNEMTYNIFVEALAFEEEMELAATLLNELYLKG 368



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 91/180 (50%)

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  + Q+++++IK+G V ++ T++ LIE   K   V+  +++   +   G   ++ +Y
Sbjct: 3   GKLNQSMQILDRLIKKGLVPNVVTYSILIEAAYKERGVDEAMKLLDDIIAKGGKPNLVSY 62

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            +L+  + K G  ++A +L   L E G KP    +  +++ +   G++D+A+   + M  
Sbjct: 63  NVLLTGLCKEGRTEDAIKLFKELPEKGFKPCVVSHNILLRSLCYEGRWDEAYELMAGMDR 122

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  P+   Y +LIT     GR  +A   L EMT+ G    +  ++ +   L   G+ DL
Sbjct: 123 DGQAPSVVTYNVLITSLSIDGRIEQAFKVLDEMTKSGFKVSANSYNPIIARLCKEGRVDL 182


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  116 bits (291), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 142/315 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+   L  +  T ++ I   G+ G +D A  +  +     C   V+ Y  L+ ALC 
Sbjct: 250 LQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCN 309

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
               + A  L  +M      PD+ TY  L++ +   G +   +EF  EM   G+ P V  
Sbjct: 310 AGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVT 369

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +L+  L   G ++ A   ++ M KQG   +L T+N+LI  + +   ++  +E++ S+ 
Sbjct: 370 FTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSME 429

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LGL     TY + I    K+G   +A +    +  +G  P        +  +  +G+ +
Sbjct: 430 SLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLE 489

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A  FF+ +K  G  P+   Y +L+   G+ GR  +A   L EM E G  P     + + 
Sbjct: 490 EAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLI 549

Query: 305 DGLKNCGKHDLAEKI 319
           D L    + D A K+
Sbjct: 550 DTLYKADRVDEAWKM 564



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 135/324 (41%), Gaps = 36/324 (11%)

Query: 29   KHGLVDNAVEVFNKCTAFNCQQCVL-LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
            KHG   +A  VF K T   C    L  YNSL+  L + +L   A+ L  +M   G  PD 
Sbjct: 764  KHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDV 823

Query: 88   RTYAILVNAWCSSGKMREAQEFLQEMSDKG------------------------------ 117
             TY + ++A   SGK++E  +  +EM  +G                              
Sbjct: 824  FTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYD 883

Query: 118  -----FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
                 F+P       L+ GLL  G LE AKQ   +M+  G + +   +N L+    K G+
Sbjct: 884  LMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGD 943

Query: 173  VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
            VE   E++  + K G+  D+ +Y I++  +   G +D+A      L   G  P    Y  
Sbjct: 944  VETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNL 1003

Query: 233  IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            +I G+ R  + ++A   F EM+ +G  P+   Y  LI   G  G   EA     E+   G
Sbjct: 1004 MINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKG 1063

Query: 293  LTPISRCFDLVTDGLKNCGKHDLA 316
            L P    ++ +  G    G  D A
Sbjct: 1064 LEPNVFTYNALIRGHSMSGNPDRA 1087



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 123/267 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G    A++V+ +  +   +  +  Y++L+ AL + +       L++ M   G  P+  
Sbjct: 204 KSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIY 263

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+ I +     +GK+ EA   L+ M D G  P V    +L+  L NAG L +AK++  KM
Sbjct: 264 TFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKM 323

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
                  D  T+ +L++     G+++   E +  +   G   DV T+ ILI A+ K G +
Sbjct: 324 KASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKV 383

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEAF  L  + + G  P    Y  +I G+ R  + D+A   F+ M+  G       Y + 
Sbjct: 384 DEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILF 443

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTP 295
           I   G+ G   +A     +M   G+ P
Sbjct: 444 IDYYGKSGESGKAIKTFEKMKTNGIVP 470



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 132/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++++F  HG +D   E +++  A      V+ +  L+ ALC+V     A+  +  M
Sbjct: 334 TYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVM 393

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G  P+  TY  L+       ++ EA E    M   G         L +     +G  
Sbjct: 394 KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGES 453

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +   KM   G V ++   N+ + ++ + G +E   E +  + K GL  D  TY IL
Sbjct: 454 GKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNIL 513

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    KAG +D+A +LL  + E+G  P   +   +I  +++  + D+A+  F  MK    
Sbjct: 514 MRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKL 573

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    Y  L+   G+ GR  EA      M      P +  F+ + D L   G+ DLA K
Sbjct: 574 APTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALK 633

Query: 319 I 319
           +
Sbjct: 634 M 634



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 131/279 (46%), Gaps = 3/279 (1%)

Query: 2    WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            W     MK    +    T +L ++  GK G +    +++ +     C+   + +N ++F 
Sbjct: 808  WGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFG 867

Query: 62   LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            L +      A  L   ++   F P   TY  L++     G++ EA++F +EM D G  P 
Sbjct: 868  LVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPN 927

Query: 122  VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                ++L+ G    G +E+A ++  +M+K+G   DL++++ +++ +C  G+V+  +  + 
Sbjct: 928  CPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFE 987

Query: 182  SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             +   GL  D+  Y ++I  + ++  ++EA  L   +   G  P    Y  +I  +   G
Sbjct: 988  ELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAG 1047

Query: 242  QFDDAFCFFSEMKIKGHPPNRPVYTMLI---TMCGRGGR 277
              ++A   + E+++KG  PN   Y  LI   +M G   R
Sbjct: 1048 MVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDR 1086



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%)

Query: 12   NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            + S +P T   +I+   K G ++ A + F +   + C     LYN L+    +      A
Sbjct: 888  DFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETA 947

Query: 72   YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              L RRM+++G  PD ++Y+I+V+  C  GK+ +A  + +E+   G +P +   +L++ G
Sbjct: 948  CELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMING 1007

Query: 132  LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L  +  +E A  + ++M  +G   DL T+N+LI  +  +G VE   +MY  +   GL  +
Sbjct: 1008 LGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPN 1067

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
            V TY  LI   S +G  D A+ +   ++  G +P    +A +
Sbjct: 1068 VFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 134/304 (44%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T S ++   GK   ++  + +  +  +   +  +  +   +  L        AY ++
Sbjct: 226 SLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGIL 285

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           +RM   G  PD  TY +L++A C++GK+  A+E   +M      P       L+    + 
Sbjct: 286 KRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDH 345

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L++ K+  ++M   G++ D+ TF  LI+ +CK G+V+        + K G+  ++ TY
Sbjct: 346 GDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTY 405

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI  + +   +DEA  L +++   G +     Y   I    + G+   A   F +MK 
Sbjct: 406 NTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKT 465

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G  PN       +      GR  EA  +   + + GL P +  ++++       G+ D 
Sbjct: 466 NGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDD 525

Query: 316 AEKI 319
           A K+
Sbjct: 526 AIKL 529



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 1/225 (0%)

Query: 93  LVNAWCSSGKMREAQE-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           LV   C  GK  +A   FL+        P +   + L+ GLL A   E A  +  KM   
Sbjct: 758 LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   D+ T+N  ++ + KSG+++   ++Y  +   G   +  T+ I+I  + K+  +D+A
Sbjct: 818 GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKA 877

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             L ++L+     P P  Y P+I G+ + G+ ++A  FF EM   G  PN P+Y +L+  
Sbjct: 878 IDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNG 937

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            G+ G    A      M + G+ P  + + ++ D L   GK D A
Sbjct: 938 FGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDA 982



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 121/289 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G VD A    +          +  YN+L+  L  +     A  L   M
Sbjct: 369 TFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSM 428

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G      TY + ++ +  SG+  +A +  ++M   G  P +   +  +  L   G L
Sbjct: 429 ESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRL 488

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK+  N + K G   D  T+N L+    K+G V+  +++   + + G   +V     L
Sbjct: 489 EEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSL 548

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  +DEA+++   + E    P    Y  ++ G+ + G+  +A   F  M     
Sbjct: 549 IDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDC 608

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           PPN   +  L+    + G    A   L  MTEM   P    ++ V  GL
Sbjct: 609 PPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGL 657



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 119/265 (44%), Gaps = 7/265 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +  T  L I+ +GK G    A++ F K         ++  N+ L++L E   
Sbjct: 428 MESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGR 487

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A      + + G  PD  TY IL+  +  +G++ +A + L EM + G +P V   + 
Sbjct: 488 LEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINS 547

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L  A  ++ A +M  +M +      + T+N+L+  + K G V+    ++  +    
Sbjct: 548 LIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADD 607

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              +  ++  L+  + K G +D A ++L  + E    P    Y  +I G+ +  + + AF
Sbjct: 608 CPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAF 667

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMC 272
             F +MK       + +Y   +T+C
Sbjct: 668 WLFHQMK-------KVIYPDYVTLC 685



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 136/307 (44%), Gaps = 2/307 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           + +T + ++E    H  V++ V VFN       ++ +  Y ++   L        A   +
Sbjct: 121 TTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVAL 180

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +M + GFV +  +Y  L++    SG  REA +  + M  +G  P ++    L+  L   
Sbjct: 181 EKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKR 240

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             +E+   ++ +M   G   ++ TF   I  + ++G+++    +   +   G   DV TY
Sbjct: 241 RDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTY 300

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            +LI A+  AG ++ A  L   +    HKP    Y  ++      G  D    F+SEM+ 
Sbjct: 301 TVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEA 360

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G+ P+   +T+LI    + G+  EA   L  M + G+ P    ++ +  GL    + D 
Sbjct: 361 DGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLD- 419

Query: 316 AEKIELL 322
            E +EL 
Sbjct: 420 -EALELF 425



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 110/264 (41%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  L+  L +      A  + RRM+ +G  P  +TY+ L+ A      +      LQEM 
Sbjct: 195 YIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEME 254

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P +    + ++ L  AG ++ A  ++ +M   G   D+ T+  LI+ +C +G++ 
Sbjct: 255 SLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLN 314

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E++  +       D  TY  L+   S  G +D        +  DG+ P    +  +I
Sbjct: 315 NAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILI 374

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + + G+ D+AF     MK +G  PN   Y  LI    R  R  EA      M  +GL 
Sbjct: 375 DALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLE 434

Query: 295 PISRCFDLVTDGLKNCGKHDLAEK 318
             +  + L  D     G+   A K
Sbjct: 435 TTAYTYILFIDYYGKSGESGKAIK 458


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 122/263 (46%), Gaps = 2/263 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+    S +  T + +I  F   G VD A+++ ++          + Y +L+  LC+   
Sbjct: 152 MQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGE 211

Query: 68  FHGAYALIRRMIRKGF--VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              A  +++ M  +G    P+  TY  L++  C  G      EFL EM   G  P     
Sbjct: 212 VERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATY 271

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL   G    A  ++N+M+  G  LD+  +NSLI+ +CK GE++F  EM   + +
Sbjct: 272 TALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVE 331

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  +  AG++DEA  L+  +   G  P    Y  +I G  +  + D 
Sbjct: 332 KGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDH 391

Query: 246 AFCFFSEMKIKGHPPNRPVYTML 268
           A    +EMK  G  P   +Y +L
Sbjct: 392 ALQLVNEMKSNGLMPAGDIYKIL 414



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 2/241 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D  +Y+  +N  C  G++ EA E  +EM +KG  P     ++L+ GL     LE    ++
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M  +GF   + T+ +LI   C +G V+  +++   +   G+  +  TY  LI  +   
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDC 209

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           G ++ A  +L  +   G++  P++  Y  +I G+ ++G F+    F  EM I G  PN  
Sbjct: 210 GEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNA 269

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            YT LI    + G F+EAA  L EM  +G       ++ + DGL   G+ D A ++++L 
Sbjct: 270 TYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILM 329

Query: 324 V 324
           V
Sbjct: 330 V 330



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 122/267 (45%), Gaps = 2/267 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y+  +  LC+      A  + R M  KG  PD  TY IL+N  C   ++      + 
Sbjct: 91  VISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMD 150

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +GF+P V     L+ G   AG +++A  ++++M  +G   +  T+ +LI+ +C  G
Sbjct: 151 EMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCG 210

Query: 172 EVEFCVEMYYSVCKLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           EVE  + +   +   G   C +V TY  LI  + + G+ +     L  ++  G  P  + 
Sbjct: 211 EVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNAT 270

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I G+ ++G F +A    +EM   G   +  +Y  LI    + G    A    + M 
Sbjct: 271 YTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMV 330

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLA 316
           E G+ P    +  +  GL + G  D A
Sbjct: 331 EKGVAPDVFTYTSLIQGLCDAGLLDEA 357



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 122/287 (42%), Gaps = 2/287 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K   ++  V + ++  A      V+ Y +L+   C       A  ++  M
Sbjct: 128 TYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM 187

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN--PPVRGRDLLVQGLLNAG 136
             +G  P+  TY  L+   C  G++  A   L+EM  +G    P V     L+ GL   G
Sbjct: 188 EHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKG 247

Query: 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
             E   + +++MI  G   +  T+ +LI  +C+ G       +   +  +G   DV  Y 
Sbjct: 248 LFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYN 307

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI  + K G +D A  +   +VE G  P    Y  +I+G+   G  D+A     EM+ K
Sbjct: 308 SLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAK 367

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           G  PN   YT LI    +  R   A   + EM   GL P    + ++
Sbjct: 368 GIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKIL 414



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 4/228 (1%)

Query: 15  VSPQTLSL--IIEEFGKHGLVDNAVEVFN--KCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           ++P T++   +I+     G V+ A+ V    K     C   V+ Y  L+  LC+  LF  
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEM 251

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
               +  MI  G  P+  TY  L++  C  G   EA   L EM   G    V   + L+ 
Sbjct: 252 GMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLID 311

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+ A++M   M+++G   D+ T+ SLI+ +C +G ++  + +   +   G+  
Sbjct: 312 GLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVP 371

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +  TY  LI   ++A   D A +L++ +  +G  P   +Y  + K ++
Sbjct: 372 NSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMPAGDIYKILFKSLY 419


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  116 bits (290), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 140/320 (43%), Gaps = 4/320 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           + L + P   TL+ +I      G V  AV + +          V  Y  L+  LC+    
Sbjct: 139 FKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDT 198

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A   +R+M  + + P+   Y+ +++  C  G + EA     EMS KG  P +     L
Sbjct: 199 LAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACL 258

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +QGL N G  +    ++++MIK G  LDL+T N L++  CK G+V     +   +   G 
Sbjct: 259 IQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGE 318

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             DV TY  LI        ++EA R+ H +V  G  P   ++  +I G  +    +    
Sbjct: 319 GPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMH 378

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
              EM   G  P+   +T LI    + GR + A    + M + G  P  +   ++ DGL 
Sbjct: 379 LLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL- 437

Query: 309 NCGKHDLAEKIELLEVSLRS 328
            C  + L+E + L E   +S
Sbjct: 438 -CKGNLLSEAVSLAEAMEKS 456



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 123/277 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QTL+++++ F K G V  A  V            V  YNSL+   C     + A  +   
Sbjct: 288 QTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHL 347

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G +PD   +  L++ WC    + +    L+EM+  GF P V     L+ G   AG 
Sbjct: 348 MVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGR 407

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             +AK++   M K G V +L+T   +++ +CK   +   V +  ++ K  L  ++  Y I
Sbjct: 408 PLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSI 467

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  +  AG ++ A+ L  +L   G +     Y  +IKG+ ++G  D A      M+  G
Sbjct: 468 LLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENG 527

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             P+   Y + +           +  YL  M + G +
Sbjct: 528 CLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFS 564



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 135/315 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+     +   T  ++I    K G    AVE   K    N +  V++Y++++  LC+
Sbjct: 170 VDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCK 229

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             L   A  L   M  KG  P+  TYA L+   C+ G+ +E    L EM   G    ++ 
Sbjct: 230 DGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQT 289

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++LV      G +  AK ++  MI  G   D+ T+NSLI   C   ++   + +++ + 
Sbjct: 290 LNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMV 349

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   D+  +  LI    K   I++   LL  + + G  P    +  +I G  + G+  
Sbjct: 350 SRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPL 409

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F  M   G  PN     +++    +G    EA +    M +  L      + ++ 
Sbjct: 410 AAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILL 469

Query: 305 DGLKNCGKHDLAEKI 319
           DG+ + GK + A ++
Sbjct: 470 DGMCSAGKLNAAWEL 484



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 147/352 (41%), Gaps = 37/352 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N   +    S I++   K GLV  A+ + ++ +    +  ++ Y  L+  LC    
Sbjct: 208 MEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGR 267

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-------------------------- 101
           +    +L+  MI+ G   D +T  ILV+A+C  G                          
Sbjct: 268 WKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNS 327

Query: 102 ---------KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
                    KM EA      M  +G  P +     L+ G      +     ++ +M K G
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMG 387

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           FV D+ T+ +LI   C++G      E++ ++ K G   ++ T  +++  + K  ++ EA 
Sbjct: 388 FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAV 447

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + +        +Y+ ++ GM   G+ + A+  FS +  KG   N   YT++I   
Sbjct: 448 SLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGL 507

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            + G   +A + L+ M E G  P +  +++   GL    K ++A  I+ L +
Sbjct: 508 CKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLT--KKEIARSIKYLTI 557



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 1/269 (0%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPD 86
           GK   +D A+++F    +      V  +  LL  +  +K +  A +L++ +    G   D
Sbjct: 52  GKVKNIDEALDLFQGMASMKPLPSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEAD 111

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
             T  I++N  C    +      L  M   G  P V     L+ GL   G +  A  +V+
Sbjct: 112 TITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVD 171

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M K  + LD+ T+  LI  +CK+G+    VE    + +     +V  Y  ++  + K G
Sbjct: 172 HMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDG 231

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
           ++ EA  L   +   G +P    YA +I+G+   G++ +      EM   G   +     
Sbjct: 232 LVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLN 291

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +L+    + G+ ++A + +  M   G  P
Sbjct: 292 ILVDAFCKEGKVMQAKSVIGFMILTGEGP 320



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 69/152 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  Y    + QT ++I++   K  L+  AV +       N    +++Y+ LL  +C    
Sbjct: 418 MHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGK 477

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A+ L   +  KG   +  TY I++   C  G + +A++ L  M + G  P     ++
Sbjct: 478 LNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNV 537

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
            VQGLL    +  + + +  M  +GF +D  T
Sbjct: 538 FVQGLLTKKEIARSIKYLTIMRDKGFSVDAAT 569



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N Q C ++ +     LC+  L   A +L   M +     +   Y+IL++  CS+GK+  A
Sbjct: 426 NLQTCAVILD----GLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAA 481

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E    +  KG    V    ++++GL   G L+ A+ ++  M + G + D  T+N  ++ 
Sbjct: 482 WELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQG 541

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
           +    E+   ++    +   G   D +T +I I  +S
Sbjct: 542 LLTKKEIARSIKYLTIMRDKGFSVDAATTEITINYLS 578



 Score = 44.7 bits (104), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+  NL ++    S++++     G ++ A E+F+       Q  V  Y  ++  LC+ 
Sbjct: 451 EAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQ 510

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                A  L+  M   G +PD  TY + V    +  ++  + ++L  M DKGF+
Sbjct: 511 GSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFS 564


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 129/267 (48%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+   C      G + L   M ++G  PD  TY  L+   C+ GK+ +A +   E
Sbjct: 524 ITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 583

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
               G    +    ++++G   A  +E  + + N+++ +   L+   +N +I+  C++G 
Sbjct: 584 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 643

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V   +++  ++   G+  + +TY  LI  V   G++++A  L+  + ++G  P    Y  
Sbjct: 644 VAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTA 703

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G  + GQ D A   + EM      PN+  YT++I    + G   +A N L++M E G
Sbjct: 704 LIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESG 763

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + P    ++++T+G       D A K+
Sbjct: 764 IVPDVVTYNVLTNGFCKANDMDNAFKV 790



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 156/366 (42%), Gaps = 47/366 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAV----EVFNKCTAFNCQQCVLLYNSL 58
           K  ++M   N++ +  TL  +++ F K   +++A     E+ +   + +   C     S+
Sbjct: 369 KIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCY----SV 424

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +  LC+   +H A+   + M+ + F P      +LV   C  GK  EA E    + +KG 
Sbjct: 425 VHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGS 484

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
                  + L+ GL  AG L  A ++V +M+++G  +D  T+N+LI   C  G+VE C  
Sbjct: 485 PASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFR 544

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL------------LH---------- 216
           +   + K G+  D+ TY  L+  +   G +D+A +L            +H          
Sbjct: 545 LREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYC 604

Query: 217 --NLVEDGHKPFPSL-----------YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
             N +ED    F  L           Y  IIK   + G    A      MK KG  PN  
Sbjct: 605 KANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCA 664

Query: 264 VYTMLIT-MCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            Y+ LI  +C  G   VE A +L+ EM + G  P   C+  +  G    G+ D AE   L
Sbjct: 665 TYSSLIHGVCNIG--LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWL 722

Query: 322 LEVSLR 327
             +S  
Sbjct: 723 EMISFN 728



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 145/318 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++  ++M   N   S   L++++    K G    A E++ +          +  N+L+  
Sbjct: 438 FRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALIHG 497

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A  +++ M+ +G   D+ TY  L+  +C+ GK+       +EM+ +G  P 
Sbjct: 498 LCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGIQPD 557

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L++GL N G L+ A ++ ++    G + ++ T+  ++E  CK+  +E    ++ 
Sbjct: 558 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 617

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +    +  +   Y I+I A  + G +  A +LL N+   G  P  + Y+ +I G+   G
Sbjct: 618 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIG 677

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             +DA     EM+ +G  PN   YT LI    + G+   A +  +EM    + P    + 
Sbjct: 678 LVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYT 737

Query: 302 LVTDGLKNCGKHDLAEKI 319
           ++ DG    G  + A  +
Sbjct: 738 VMIDGYCKLGNMEKANNL 755



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 143/314 (45%), Gaps = 5/314 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T + ++    K    +   EVF   +   C   V  + +++ ALC+      A  L 
Sbjct: 208 SLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPD-VFSFTNVINALCKGGKMENAIELF 266

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +M + G  P+  TY  ++N  C +G++  A E  ++M+ KG  P ++    L+ GL+  
Sbjct: 267 MKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKL 326

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
            + +    ++++MI  GF  ++  FN+LI+  CK G +E  +++   +    +     T 
Sbjct: 327 NFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTL 386

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+    K+  I+ A   L  ++  G    P     ++  + ++ ++  AF F   M  
Sbjct: 387 YSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLS 446

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF-DLVTDGLKNCGKHD 314
           +   P+  + TML+    + G+ +EA      + E G +P S+   + +  GL   GK  
Sbjct: 447 RNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKG-SPASKVTSNALIHGLCGAGKLP 505

Query: 315 LAEKI--ELLEVSL 326
            A +I  E+LE  L
Sbjct: 506 EASRIVKEMLERGL 519



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 111/239 (46%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D+A++++++  A      +  Y  ++   C+         L   ++ K    +   Y
Sbjct: 572 GKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVY 631

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            I++ A C +G +  A + L+ M  KG  P       L+ G+ N G +E AK ++++M K
Sbjct: 632 NIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRK 691

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +GFV ++  + +LI   CK G+++     +  +    +  +  TY ++I    K G +++
Sbjct: 692 EGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEK 751

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           A  LL  + E G  P    Y  +  G  +    D+AF    +M  +G P +   YT L+
Sbjct: 752 ANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLV 810



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 135/314 (42%), Gaps = 6/314 (1%)

Query: 3   KTIELMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           K  E+ +  +    P   S   +I    K G ++NA+E+F K         V+ YN ++ 
Sbjct: 227 KCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIIN 286

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+      A+ L  +M  KG  P+ +TY  L+N         +    L EM   GFNP
Sbjct: 287 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNP 346

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + L+ G    G +E A ++ + MI +       T  SL++  CKS ++E      
Sbjct: 347 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHAENAL 406

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL         ++  + K      AFR    ++    +P   L   ++ G+ + 
Sbjct: 407 EEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCGLCKD 466

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISR- 298
           G+  +A   +  +  KG P ++     LI  +CG  G+  EA+  + EM E GL P+ R 
Sbjct: 467 GKHLEATELWFRLLEKGSPASKVTSNALIHGLCG-AGKLPEASRIVKEMLERGL-PMDRI 524

Query: 299 CFDLVTDGLKNCGK 312
            ++ +  G  N GK
Sbjct: 525 TYNALILGFCNEGK 538



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T  +++E + K   +++   +FN+  +   +   ++YN ++ A C+      A  L+  
Sbjct: 594 HTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLEN 653

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG +P+  TY+ L++  C+ G + +A+  + EM  +GF P V     L+ G    G 
Sbjct: 654 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 713

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +++A+    +MI      +  T+  +I+  CK G +E    +   + + G+  DV TY +
Sbjct: 714 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 773

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           L     KA  +D AF++   +  +G       Y  ++ G
Sbjct: 774 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 103/228 (45%), Gaps = 3/228 (1%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A  +   + RKG  P  +T   L+++   + +  +  E  + MS+ G  P V     
Sbjct: 190 FSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSE-GACPDVFSFTN 248

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G +E+A ++  KM K G   ++ T+N +I  +C++G ++   E+   +   G
Sbjct: 249 VINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKG 308

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  ++ TY  LI  + K    D+   +L  ++  G  P   ++  +I G  + G  + A 
Sbjct: 309 VQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGAL 368

Query: 248 CFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
                M  K   P +  +Y+++   C +  +   A N L E+   GL+
Sbjct: 369 KIKDVMISKNITPTSVTLYSLMQGFC-KSDQIEHAENALEEILSSGLS 415



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 77/161 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +  +  T S +I      GLV++A  + ++         V+ Y +L+   C+
Sbjct: 651 LENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCK 710

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A +    MI     P+K TY ++++ +C  G M +A   L +M + G  P V  
Sbjct: 711 LGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVT 770

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
            ++L  G   A  +++A ++ ++M  +G  +D  T+ +L+ 
Sbjct: 771 YNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVH 811


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 124/276 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 139 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM  KG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +  G+ + G+  DA     EM   G  
Sbjct: 319 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G   + +  L EM   G  P
Sbjct: 379 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVP 414



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 138 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 198 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRV 257

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 258 DLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 317

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT L +   + GR V+A   L EM  +GL
Sbjct: 318 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGL 377

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +R + ++ +    C K D+ +  +LL+
Sbjct: 378 KPDARTYTMIINEF--CKKGDVWKGSKLLK 405



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 280 NTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQ 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  L   + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWK 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  GH P+
Sbjct: 400 GSKLLKEMQRDGHVPS 415



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 111/238 (46%), Gaps = 2/238 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DJYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + 
Sbjct: 125 EEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   ++  G +P    Y+ +I G+ +  + DDA   F EM +KG  PN   +
Sbjct: 185 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +   L++
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAHHLID 300



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G +D+A E   +    N +   + Y +L   LC+
Sbjct: 299 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  PD RTY +++N +C  G + +  + L+EM   G  P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSV 416


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 124/263 (47%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A EV+N       +  V+ YN++L + C+      A  L+ +M + G +P+  TY +
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           LVN    SG++ +A+E +QEM   G        D L++G    G L+ A ++  +M+ +G
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
            V  L T+N+++  +CK G V    ++   +    L  D+ +Y  LI   ++ G I EAF
Sbjct: 291 AVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF 350

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   L   G  P    Y  +I G+ R G  D A     EM   G  P+   +T+L+   
Sbjct: 351 LLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGF 410

Query: 273 GRGGRFVEAANYLVEMTEMGLTP 295
            + G    A     EM   GL P
Sbjct: 411 CKLGNLPMAKELFDEMLNRGLQP 433



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 138/305 (45%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ F K G V  A+++  +     C    + YN L+  L        A  LI+ M
Sbjct: 192 TYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEM 251

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G      TY  L+  +C  G++ EA    +EM  +G  P +   + ++ GL   G +
Sbjct: 252 LRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRV 311

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++++ M+ +  + DL ++N+LI    + G +     ++  +   GL   V TY  L
Sbjct: 312 SDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTL 371

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + + G +D A RL   +++ G  P    +  +++G  + G    A   F EM  +G 
Sbjct: 372 IDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGL 431

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+R  Y   I    + G   +A     EM   G  P    +++  DGL   G  +L E 
Sbjct: 432 QPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLG--NLKEA 489

Query: 319 IELLE 323
            EL++
Sbjct: 490 SELVK 494



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 142/349 (40%), Gaps = 35/349 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L VS  T   +I  + + G +D A  +  +  +      ++ YN++++ LC+
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L+  M+ K  +PD  +Y  L+  +   G + EA     E+  +G  P V  
Sbjct: 308 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVT 367

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL   G L+ A ++ ++MIK G   D+ TF  L+   CK G +    E++  + 
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML 427

Query: 185 KLGLC-----------------------------------ADVSTYKILIPAVSKAGMID 209
             GL                                     D+ TY + I  + K G + 
Sbjct: 428 NRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 487

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA  L+  ++ +G  P    Y  II      G    A   F EM  KG  P+   YT+LI
Sbjct: 488 EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLI 547

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
                 GR   A  +  EM E G+ P    ++ + +GL    K D A K
Sbjct: 548 HSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYK 596



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 139/330 (42%), Gaps = 35/330 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +++M   NL     + + +I  + + G +  A  +F +         V+ YN+L+  L
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGL 375

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP- 121
           C +     A  L   MI+ G  PD  T+ ILV  +C  G +  A+E   EM ++G  P  
Sbjct: 376 CRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDR 435

Query: 122 ---------------------------VRG-------RDLLVQGLLNAGYLESAKQMVNK 147
                                       RG        ++ + GL   G L+ A ++V K
Sbjct: 436 FAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKK 495

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M+  G V D  T+ S+I     +G +     ++  +   G+   V TY +LI + +  G 
Sbjct: 496 MLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGR 555

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           +  A      + E G  P    Y  +I G+ +  + D A+ FF+EM+ KG  PN+  YT+
Sbjct: 556 LKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTI 615

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           LI      G + EA     +M +  + P S
Sbjct: 616 LINENCNLGHWQEALRLYKDMLDREIQPDS 645



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 116/242 (47%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+  G  P   TY  +++++C  GK++EA + L +M   G  P     ++LV GL ++G 
Sbjct: 181 MVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGE 240

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE AK+++ +M++ G  +   T++ LI   C+ G+++    +   +   G    + TY  
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNT 300

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++  + K G + +A +LL  +V     P    Y  +I G  R G   +AF  F+E++ +G
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRG 360

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  LI    R G    A     EM + G  P    F ++  G    G   +A+
Sbjct: 361 LVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAK 420

Query: 318 KI 319
           ++
Sbjct: 421 EL 422



 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 123/277 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++      G ++ A E+  +      +     Y+ L+   CE      A  L   M
Sbjct: 227 TYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEM 286

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G VP   TY  ++   C  G++ +A++ L  M +K   P +   + L+ G    G +
Sbjct: 287 LSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNI 346

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +  ++  +G V  + T+N+LI+ +C+ G+++  + +   + K G   DV T+ IL
Sbjct: 347 GEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G +  A  L   ++  G +P    Y   I G  + G    AF    EM  +G 
Sbjct: 407 VRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           PP+   Y + I    + G   EA+  + +M   GL P
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVP 503



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 137/309 (44%), Gaps = 4/309 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF---NCQQCVLLYNSLLFALCEVKLFHGAY 72
           S  T ++I++   ++GL+ +A  V  K  +    N    VL+ + LL+   +  +     
Sbjct: 80  SELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCL 139

Query: 73  ALIRRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +  +M+ KG +PD K    +L         +  A+E    M + G  P V   + ++  
Sbjct: 140 LVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDS 199

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A Q++ +M K G + +  T+N L+  +  SGE+E   E+   + +LGL   
Sbjct: 200 FCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVS 259

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  LI    + G +DEA RL   ++  G  P    Y  I+ G+ + G+  DA     
Sbjct: 260 AYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLD 319

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  K   P+   Y  LI    R G   EA     E+   GL P    ++ + DGL   G
Sbjct: 320 VMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMG 379

Query: 312 KHDLAEKIE 320
             D+A +++
Sbjct: 380 DLDVAMRLK 388



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/271 (20%), Positives = 118/271 (43%), Gaps = 39/271 (14%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ---------------------------- 111
           + GF   + TYA++++    +G MR A   ++                            
Sbjct: 74  QTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKS 133

Query: 112 ----------EMSDKGFNPPVRGRDLLVQGLLNA-GYLESAKQMVNKMIKQGFVLDLETF 160
                     +M  KG  P ++  + +++ L +    ++ A+++ N M++ G    + T+
Sbjct: 134 MLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTY 193

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
           N+++++ CK G+V+  +++   + K+G   +  TY +L+  +S +G +++A  L+  ++ 
Sbjct: 194 NTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLR 253

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G +     Y P+I+G   +GQ D+A     EM  +G  P    Y  ++    + GR  +
Sbjct: 254 LGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSD 313

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           A   L  M    L P    ++ +  G    G
Sbjct: 314 ARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 344



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 92/186 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN  +  L ++     A  L+++M+  G VPD  TY  +++A   +G +R+A+    
Sbjct: 470 LITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFL 529

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  KG  P V    +L+      G L+ A     +M ++G   ++ T+N+LI  +CK  
Sbjct: 530 EMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVR 589

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++   + +  +   G+  +  TY ILI      G   EA RL  ++++   +P    ++
Sbjct: 590 KMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHS 649

Query: 232 PIIKGM 237
            ++K +
Sbjct: 650 ALLKHL 655



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 1/204 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I+   K G +  A E+  K          + Y S++ A         A A+   M
Sbjct: 472 TYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEM 531

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P   TY +L++++   G+++ A     EM +KG +P V   + L+ GL     +
Sbjct: 532 LSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKM 591

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +   +M  +G   +  T+  LI   C  G  +  + +Y  +    +  D  T+  L
Sbjct: 592 DQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSAL 651

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDG 222
           +  ++K        R L N++  G
Sbjct: 652 LKHLNK-DYKSHVVRHLENVIAAG 674


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 129/289 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + ++++  +   G + +  ++F+          +  +N L+ A     +   A  +   M
Sbjct: 363 SYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEM 422

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   TY  ++ A C  GKM +A E   +M D+G  P       L+QG    G L
Sbjct: 423 RDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSL 482

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+++++++  G  LD+  F S+I  +CK G V     ++     +GL  D   Y +L
Sbjct: 483 LKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNML 542

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +      G +++A R+   +V  G +P    Y  ++ G  + G+ D+    F EM  KG 
Sbjct: 543 MDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGI 602

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+  +Y ++I      GR V A     EMTE G+      + +V  GL
Sbjct: 603 KPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 139/280 (49%), Gaps = 2/280 (0%)

Query: 16  SPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           SP  ++   +I+ F K G V+ A ++F +         ++ Y+S++ ALC+ +    A A
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEA 277

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M+ KG +PD  TY  L+  + S+G+ +EA    +EM  +   P V   + L+  L 
Sbjct: 278 FLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLC 337

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G ++ A+ + + M  +G   D+ ++  ++      G +    +++  +   G+   + 
Sbjct: 338 KYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVIC 397

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T+ +LI A +  GM+D+A  + + + + G KP    Y  +I  + R G+ DDA   F++M
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G  P++  Y  LI      G  ++A   + E+   G+
Sbjct: 458 IDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 497



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 131/275 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ +   G++D A+ +FN+      +  V+ Y +++ ALC +     A     +M
Sbjct: 398 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQM 457

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G VPDK  Y  L+  +C+ G + +A+E + E+ + G    +     ++  L   G +
Sbjct: 458 IDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRV 517

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ + +  +  G   D   +N L++  C  G++E  + ++ ++   G+  +V  Y  L
Sbjct: 518 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G IDE   L   +++ G KP   LY  II G+F  G+   A   F EM   G 
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             N+  Y++++    +   F EA     E+  M +
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNV 672



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 140/296 (47%), Gaps = 3/296 (1%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87
           GK G  D+ + +  +     C   V+ YN+++    +    + A  L + M+++G  PD 
Sbjct: 198 GKSGQADDLLRMMAEGGTV-CSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDL 256

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
            TY+ +V+A C +  M +A+ FL++M +KG  P     + L+ G  + G  + A ++  +
Sbjct: 257 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M +Q  + D+   N+L+ ++CK G+++   +++ ++   G   DV +Y I++   +  G 
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +   L   ++ DG  P    +  +IK     G  D A   F+EM+  G  P+   Y  
Sbjct: 377 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMT 436

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +I    R G+  +A     +M + G+ P    +  +  G   C    L +  EL+ 
Sbjct: 437 VIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGF--CTHGSLLKAKELIS 490



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 137/310 (44%), Gaps = 3/310 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           P  LS +  T +++++   +    + A+  F +      +   ++ + LL   CE K   
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTD 165

Query: 70  GAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRD 126
            A   L+ R    G VPD  +Y IL+ + C+ GK  +A + L+ M++ G   +P V   +
Sbjct: 166 EALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYN 225

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            ++ G    G +  A  +  +M+++G   DL T++S++  +CK+  ++        +   
Sbjct: 226 TVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNK 285

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  D  TY  LI   S  G   EA R+   +      P       ++  + + G+  +A
Sbjct: 286 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEA 345

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F  M +KG  P+   YT+++      G  V+  +    M   G+ P+   F+++   
Sbjct: 346 RDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKA 405

Query: 307 LKNCGKHDLA 316
             NCG  D A
Sbjct: 406 YANCGMLDKA 415



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 117/268 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G V +A  +F+           ++YN L+   C V     A  +   M+  G
Sbjct: 507 IINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG 566

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+   Y  LVN +C  G++ E     +EM  KG  P     ++++ GL  AG    AK
Sbjct: 567 IEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAK 626

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
              ++M + G  ++  T++ ++  + K+   +  + ++  +  + +  D+ T   +I  +
Sbjct: 627 VKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGM 686

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   ++EA  L  ++   G  P    Y+ +I  + + G  ++A   FS M+  G  P+ 
Sbjct: 687 FQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 746

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    +    V A  YL ++ E
Sbjct: 747 RLLNHVVRELLKKNEIVRAGAYLSKIDE 774



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F  HG +  A E+ ++      +  ++ + S++  LC++     A  +    +  G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD   Y +L++ +C  GKM +A      M   G  P V G   LV G    G ++   
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGL 591

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M+++G       +N +I+ + ++G        ++ + + G+  +  TY I++  +
Sbjct: 592 SLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGL 651

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K    DEA  L   L     K        +I GMF+  + ++A   F+ +   G  P  
Sbjct: 652 FKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCA 711

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             Y+++IT   + G   EA +    M   G  P SR  + V
Sbjct: 712 VTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHV 752



 Score = 55.1 bits (131), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 76/164 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    ++++  T S+++    K+   D A+ +F +  A N +  ++  N+++  + + + 
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   + R G VP   TY+I++      G + EA++    M + G  P  R  + 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +V+ LL    +  A   ++K+ ++ F L+  T   L++     G
Sbjct: 752 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 141/302 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L     T + +I+ FGK G +D+ V  F +     C+  V+ YN+L+   C+ 
Sbjct: 286 EEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKF 345

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                     R M   G  P+  +Y+ LV+A+C  G M++A +F  +M   G  P     
Sbjct: 346 GKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTY 405

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+      G L  A ++ N+M++ G   ++ T+ +LI+ +C +  ++   E++  +  
Sbjct: 406 TSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT 465

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  ++++Y  LI    KA  +D A  LL+ L   G KP   LY   I G+    + + 
Sbjct: 466 AGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEA 525

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    +EMK  G   N  +YT L+    + G   E  + L EM E+ +      F ++ D
Sbjct: 526 AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585

Query: 306 GL 307
           GL
Sbjct: 586 GL 587



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK + +    ++ + ++  F K G  D+    F        +  V  YN ++  +C+   
Sbjct: 218 MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 277

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G VPD  TY  +++ +   G++ +   F +EM D    P V   + 
Sbjct: 278 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 337

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G L    +   +M   G   ++ ++++L++  CK G ++  ++ Y  + ++G
Sbjct: 338 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 397

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  K G + +AFRL + +++ G +     Y  +I G+    +  +A 
Sbjct: 398 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 457

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F +M   G  PN   Y  LI    +      A   L E+   G+ P
Sbjct: 458 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 505



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 142/306 (46%), Gaps = 1/306 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +  T + +I+   K G + +A  + N+      +  V+ Y +L+  LC+ + 
Sbjct: 393 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 452

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +M   G +P+  +Y  L++ +  +  M  A E L E+  +G  P +     
Sbjct: 453 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 512

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + GL +   +E+AK ++N+M + G   +   + +L++   KSG     + +   + +L 
Sbjct: 513 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELD 572

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDA 246
           +   V T+ +LI  + K  ++ +A    + +  D G +   +++  +I G+ +  Q + A
Sbjct: 573 IEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAA 632

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F +M  KG  P+R  YT L+    + G  +EA     +M E+G+      +  +  G
Sbjct: 633 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 692

Query: 307 LKNCGK 312
           L +C +
Sbjct: 693 LSHCNQ 698



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 130/322 (40%), Gaps = 7/322 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W T  +  P    V     S++I+     G+++ A++ F+K   F         N LL 
Sbjct: 181 LWSTRNVCVP-GFGVFDALFSVLID----LGMLEEAIQCFSKMKRFRVFPKTRSCNGLLH 235

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              ++          + MI  G  P   TY I+++  C  G +  A+   +EM  +G  P
Sbjct: 236 RFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVP 295

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G    G L+       +M       D+ T+N+LI   CK G++   +E Y
Sbjct: 296 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFY 355

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  +V +Y  L+ A  K GM+ +A +   ++   G  P    Y  +I    + 
Sbjct: 356 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 415

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G   DAF   +EM   G   N   YT LI       R  EA     +M   G+ P    +
Sbjct: 416 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY 475

Query: 301 DLVTDGLKNCGKHDLAEKIELL 322
           + +  G       D A  +ELL
Sbjct: 476 NALIHGFVKAKNMDRA--LELL 495



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 1/240 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F K   +D A+E+ N+      +  +LLY + ++ LC ++    A  ++  M   G
Sbjct: 478 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 537

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              +   Y  L++A+  SG   E    L EM +      V    +L+ GL     +  A 
Sbjct: 538 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597

Query: 143 QMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
              N++    G   +   F ++I+ +CK  +VE    ++  + + GL  D + Y  L+  
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             K G + EA  L   + E G K     Y  ++ G+    Q   A  F  EM  +G  P+
Sbjct: 658 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 717



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 1/149 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALC 63
           ++ MK  ++ V+  T  ++I+   K+ LV  AV+ FN+ +  F  Q    ++ +++  LC
Sbjct: 565 LDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLC 624

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  L  +M++KG VPD+  Y  L++     G + EA     +M++ G    + 
Sbjct: 625 KDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLL 684

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
               LV GL +   L+ A+  + +MI +G
Sbjct: 685 AYTSLVWGLSHCNQLQKARSFLEEMIGEG 713



 Score = 43.5 bits (101), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 26/179 (14%)

Query: 160 FNSLIETICKSGEVEFCVEMYY---SVCKLGLC--ADVSTYKILIPA----VSKAGMIDE 210
           F   +E+ C    + FC  MYY   SV K  +   AD   + +L       V   G+ D 
Sbjct: 138 FKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDA 197

Query: 211 AFRLLHNL--VEDGHKPFPSLYAPII-------KGMFRR----GQFDDAFCFFSEMKIKG 257
            F +L +L  +E+  + F  +    +        G+  R    G+ DD   FF +M   G
Sbjct: 198 LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 257

Query: 258 HPPNRPVYTMLIT-MCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             P    Y ++I  MC  G   VEAA  L  EM   GL P +  ++ + DG    G+ D
Sbjct: 258 ARPTVFTYNIMIDCMCKEGD--VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314


>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
          Length = 854

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 7/308 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++P +     +T +++++ +     ++ A  +  K  ++  +  V+ +N+L  A   +
Sbjct: 477 EMLQPND-----RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARI 531

Query: 66  KLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                A  +I  RM+     P+ RT   +VN +C  GKM EA  F   M + G +P +  
Sbjct: 532 GSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFV 591

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L++G LN   ++   ++V+ M + G   D+ TF++L+      G+++ C E+Y  + 
Sbjct: 592 FNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDML 651

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D+  + IL    ++AG  ++A ++L+ + + G +P   +Y  II G    G+  
Sbjct: 652 EGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMK 711

Query: 245 DAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            A   + +M  I G  PN   Y  LI   G   +  +A   L +M    + P  +   L+
Sbjct: 712 KAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLI 771

Query: 304 TDGLKNCG 311
            DG K+ G
Sbjct: 772 ADGWKSIG 779



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 10/297 (3%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G    A  +FN       +  ++ Y +L+ AL   K FH   +LI ++ + G  PD  
Sbjct: 354 ERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTI 413

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +  ++NA   SG + +A +  ++M + G  P     + L++G    G LE + ++++ M
Sbjct: 414 LFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM 473

Query: 149 IKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           ++   +  +  T N L++  C   ++E    + Y +   G+  DV T+  L  A ++ G 
Sbjct: 474 LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGS 533

Query: 208 IDEAF-----RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              A      R+LHN V    KP       I+ G    G+ ++A  FF  MK  G  PN 
Sbjct: 534 TCTAEDMIIPRMLHNKV----KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 589

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            V+  LI               +  M E G+ P    F  + +   + G     E+I
Sbjct: 590 FVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 646



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 40/321 (12%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T+  + II    + G +D A+++F K     C+     +N+L+    ++     + 
Sbjct: 408 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 467

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FN----- 119
            L+  M+R   + P+ RT  ILV AWC+  K+ EA   + +M   G       FN     
Sbjct: 468 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 527

Query: 120 ------------------------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                                   P VR    +V G    G +E A +   +M + G   
Sbjct: 528 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 587

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L  FNSLI+      +++   E+   + + G+  DV T+  L+ A S  G +     + 
Sbjct: 588 NLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 647

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            +++E G  P    ++ + KG  R G+ + A    ++M+  G  PN  +YT +I+     
Sbjct: 648 TDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 707

Query: 276 GRFVEAANYLVEMTEM-GLTP 295
           G   +A     +M  + GL+P
Sbjct: 708 GEMKKAMQVYKKMCGIVGLSP 728



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           VR R  L+ GL+  G  + A  + N +I++G    L T+ +L+  + +       + +  
Sbjct: 342 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 401

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            V K GL  D   +  +I A S++G +D+A ++   + E G KP  S +  +IKG  + G
Sbjct: 402 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 461

Query: 242 QFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + +++      M + +   PN     +L+       +  EA N + +M   G+ P    F
Sbjct: 462 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 521

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + +       G    AE +
Sbjct: 522 NTLAKAYARIGSTCTAEDM 540



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 183 VCKLGL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           +C  G  C DV +   L+  + + G   EA  + + L+E+GHKP    Y  ++  + R+ 
Sbjct: 332 ICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQK 391

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            F       S+++  G  P+  ++  +I      G   +A     +M E G  P +  F+
Sbjct: 392 HFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFN 451

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +  G    GK  L E   LL++ LR 
Sbjct: 452 TLIKGYGKIGK--LEESSRLLDMMLRD 476



 Score = 62.4 bits (150), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 2/233 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D R+   L+N     G+ +EA      + ++G  P +     LV  L    +  S   ++
Sbjct: 341 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 400

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +K+ K G   D   FN++I    +SG ++  ++++  + + G     ST+  LI    K 
Sbjct: 401 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 460

Query: 206 GMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           G ++E+ RLL  ++ D   +P       +++    + + ++A+    +M+  G  P+   
Sbjct: 461 GKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVT 520

Query: 265 YTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  L     R G    A + ++  M    + P  R    + +G    GK + A
Sbjct: 521 FNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 573



 Score = 42.0 bits (97), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
              S++ + + + G  + A ++ N+   F  +  V++Y  ++   C       A  + ++
Sbjct: 660 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 719

Query: 78  MIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           M    G  P+  TY  L+  +  + +  +A+E L++M  K   P  +   L+  G  + G
Sbjct: 720 MCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIG 779

Query: 137 YLES 140
              S
Sbjct: 780 VSNS 783


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 149/308 (48%), Gaps = 5/308 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F K G VD A ++F K         V+ Y+SL+  LC+ K    A  ++R+M+  G
Sbjct: 230 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 289

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L++ + +SG  +E+    +EMS     P V   +  +  L   G ++ A+
Sbjct: 290 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 349

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M+ +G   D+ ++ +L+     +G +     ++  +   G+  D   +  LI A 
Sbjct: 350 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 409

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           ++ GM+D++  +  ++ + G  P    ++ +I    R G+ DDA   F+ M   G PP+ 
Sbjct: 410 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 469

Query: 263 PVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN-CGKHDLAEKIE 320
            VY+ LI   C R    V+A   + +M   G+ P   C    T  + N C +  +AE  +
Sbjct: 470 AVYSCLIQGQCNRRD-LVKAKELISDMLSKGIPP--PCIKFFTSIINNLCKEGRVAEGKD 526

Query: 321 LLEVSLRS 328
           ++++ + +
Sbjct: 527 VVDLIIHT 534



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 8/324 (2%)

Query: 5   IELMKPYNLSVSPQ------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           +EL K  +    P+      T +++I  + +    D  + VF +         V  YN+L
Sbjct: 171 VELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNAL 230

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +    +      A+ L  +M  +G +P+  TY+ L+N  C + +M +A+  L++M   G 
Sbjct: 231 IDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGV 290

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P     + L+ G   +G  + + ++  +M     V D+   NS +  +CK G ++   +
Sbjct: 291 RPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARD 350

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           ++ S+   G   DV +Y  L+   + AG I     L + +V +G  P   ++  +I    
Sbjct: 351 IFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYA 410

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           R G  D +   F +M  +G  P+   ++ +I+   R GR  +A      M + G+ P + 
Sbjct: 411 RLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTA 470

Query: 299 CFDLVTDGLKNCGKHDLAEKIELL 322
            +  +  G   C + DL +  EL+
Sbjct: 471 VYSCLIQG--QCNRRDLVKAKELI 492



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G V    +V +       +  ++ +NSL+   C V     A  L+  M   G
Sbjct: 511 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 570

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  LV+ +C  G++ +A    ++M  K         ++++ GL  A     AK
Sbjct: 571 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 630

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +M ++MI+ G  + + T+ +++  +C+   + E    +E  +S   + +  D+ T+ I+I
Sbjct: 631 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS---MNVKFDILTFNIVI 687

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K G   EA  L   +   G  P    Y  +I  + +   F+DA   FS M+     
Sbjct: 688 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 747

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+  +   +I M    G   +A NYL ++ + G+ P
Sbjct: 748 PDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP 783



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 3/260 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++N+L+ A   + +   +  +   M ++G  PD  T++ +++A+C  G++ +A E    M
Sbjct: 401 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM 460

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGE 172
            D G  P       L+QG  N   L  AK++++ M+ +G     ++ F S+I  +CK G 
Sbjct: 461 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGR 520

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V    ++   +   G   ++ T+  L+      G + EA  LL ++   G +P    Y  
Sbjct: 521 VAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNT 580

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G  + G+ DDA   F +M  K        Y +++    +  R + A     EM E G
Sbjct: 581 LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 640

Query: 293 LTPISRCFDLVTDGL--KNC 310
           +      +  V  GL   NC
Sbjct: 641 MAVSIHTYATVLGGLCRNNC 660



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 36/330 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F + G +D+A+E FN            +Y+ L+   C  +    A  LI  M
Sbjct: 436 TFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDM 495

Query: 79  IRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + KG  P   + +  ++N  C  G++ E ++ +  +   G  P +   + LV G    G 
Sbjct: 496 LSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGN 555

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV-------------------- 177
           ++ A  +++ M   G   D+ T+N+L++  CK G ++  +                    
Sbjct: 556 MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNI 615

Query: 178 ---------------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                          EM++ + + G+   + TY  ++  + +    DEA  LL  L    
Sbjct: 616 ILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMN 675

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            K     +  +I+ MF+ G+  +A   F+ +   G  P    Y ++IT   +   F +A 
Sbjct: 676 VKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDAD 735

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           N    M +   TP SR  + +   L N G+
Sbjct: 736 NLFSSMEKSSCTPDSRILNEIIRMLLNKGE 765



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + KHG +D+A+ +F            + YN +L  L + +    A  +   M
Sbjct: 577 TYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEM 636

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G      TYA ++   C +    EA   L+                           
Sbjct: 637 IESGMAVSIHTYATVLGGLCRNNCTDEANMLLE--------------------------- 669

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                   K+       D+ TFN +I  + K G  +   E++ ++   GL   + TY+++
Sbjct: 670 --------KLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVM 721

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K    ++A  L  ++ +    P   +   II+ +  +G+   A  + S++  KG 
Sbjct: 722 ITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGI 781

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            P     ++LI +    G++ E    L E
Sbjct: 782 LPEATTTSLLIYLFSVNGKYREYIKLLPE 810



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++VS  T + ++    ++   D A  +  K  + N +  +L +N ++ A+ +V     A 
Sbjct: 641 MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 700

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   +   G VP   TY +++          +A      M      P  R  + +++ L
Sbjct: 701 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRML 760

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           LN G +  A   ++K+ K+G + +  T + LI     +G+
Sbjct: 761 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 800



 Score = 40.8 bits (94), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G    A E+F   + +     +L Y  ++  L + + F  A  L   M
Sbjct: 682 TFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 741

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-LNAGY 137
            +    PD R    ++    + G++ +A  +L ++  KG  P      LL+    +N  Y
Sbjct: 742 EKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY 801

Query: 138 LESAKQMVNK 147
            E  K +  K
Sbjct: 802 REYIKLLPEK 811


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 118/251 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+ +   G  D A+ V     A  CQ     Y  L+   C++     A  +   M
Sbjct: 472 TYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEM 531

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P++ TY  L++ +C   K+  A   L+ M   G  P V+  ++L+ GL      
Sbjct: 532 MDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNF 591

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++   M+++    D+ T++++I  +C +G +   +EM+  + K G   ++ TY  L
Sbjct: 592 SGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSL 651

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G ++EA  +   L + G  P    Y  +I+     G+ D AF F  EM   G 
Sbjct: 652 IQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGC 711

Query: 259 PPNRPVYTMLI 269
            P    Y +LI
Sbjct: 712 QPTLQTYDVLI 722



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 5/306 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++ +  K  +    ++ +++      Q  +L+YNS++ ALC+      A ++I ++
Sbjct: 195 TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKV 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G  PD  TY  ++  +C +  +  A E    M ++G  P       L+ GL N+G +
Sbjct: 255 FKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRV 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A   +++M + G +  + TF + I  +C  G +E   +++  + K G   +V TY  L
Sbjct: 315 NEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSL 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I     + M   A  L H +  DG  P    Y  ++  +    + D A   F+ M   G 
Sbjct: 375 ISGQRVSRM---AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGC 431

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   Y  LI      G   +A + L  M +   TP    ++++  G  + G  D+A  
Sbjct: 432 LPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVA-- 489

Query: 319 IELLEV 324
           I +LE+
Sbjct: 490 IRVLEL 495



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN ++   C+      A  ++  M   G  PD+ +Y  L++ +C   KM  A     
Sbjct: 470 LVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFN 529

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM D+G  P       L+ G      L+ A +M+ +M + G   +++T+N LI  + K  
Sbjct: 530 EMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQN 589

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 E+   + +  +  DV TY  +I  +   G I  A  + + +V+ G  P    Y+
Sbjct: 590 NFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYS 649

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I+ + + G+ ++A   FSE+K +G  P+   Y  +I +C   G+   A ++L EM   
Sbjct: 650 SLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINA 709

Query: 292 GLTPISRCFDLVTDGLKN 309
           G  P  + +D++  GL+N
Sbjct: 710 GCQPTLQTYDVLIKGLQN 727



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 138/333 (41%), Gaps = 32/333 (9%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + ++  +D+A E+FN+     C+     Y++L+  LC     + A   I  M
Sbjct: 265 TYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEM 324

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG------- 131
            R G +P   T+   + A C  G++ +A +   +M  KG  P V     L+ G       
Sbjct: 325 TRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRMA 384

Query: 132 -------------------------LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
                                    L+    ++SA  + N M K G + +  ++N LI  
Sbjct: 385 IGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRG 444

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
            C  G+ E  + M  ++ K      + TY I+I     +G  D A R+L  +  +G +P 
Sbjct: 445 YCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPD 504

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
              Y  +I G  +  + + A   F+EM  +G  PN   YT LI+   +  +   AA  L 
Sbjct: 505 EWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLE 564

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            M   G  P  + ++++  GL        AE++
Sbjct: 565 RMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEEL 597



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 117/286 (40%), Gaps = 3/286 (1%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +++A ++F       C+  V  Y SL+      ++   A  L  RM R G VP+  TY
Sbjct: 347 GRIEDAWKIFIDMKKKGCKPNVYTYTSLISG---QRVSRMAIGLFHRMSRDGVVPNTVTY 403

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N    + ++  A      M   G  P     + L++G    G  E A  M+  M+K
Sbjct: 404 NALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLK 463

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                 L T+N +I+  C SG+ +  + +   +   G   D  +Y  LI    K   ++ 
Sbjct: 464 GRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMEL 523

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  + + +++ G  P    Y  +I G  +  + D A      MK  G  PN   Y +LI 
Sbjct: 524 ASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIH 583

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +   F  A      M E  ++P    +  V +GL N G   LA
Sbjct: 584 GLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLA 629



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 16/317 (5%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S +I     +G +  A+E+FNK     C   +  Y+SL+ AL +      A 
Sbjct: 606 ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAE 665

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   + ++G +PD+ TY  ++     SGK+  A +FL EM + G  P ++  D+L++GL
Sbjct: 666 EMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            N         + N      F  D +  N  + ++  S   E   E+   +         
Sbjct: 726 QNEMVYHKLVALPNAASTSTF--DDQIINKDVISVLSSKLAELDFELSRQL--------- 774

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  L+  +S++G   EA  L  ++V     P    Y   +  + R  + D A   F  
Sbjct: 775 --YDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKH 832

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  +    +   Y  LI    +  R  EA     +M    L      + ++ +GL   G 
Sbjct: 833 MSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAGY 892

Query: 313 HDLA-EKIELLEVSLRS 328
            DL  E + ++E + R+
Sbjct: 893 KDLCMEFLHIMETNRRN 909



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 91/197 (46%)

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
           R R  +++   N   +  A   ++   ++G  + L T+ +L+  + K       ++ Y+ 
Sbjct: 159 RARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQ 218

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  ++  Y  +I A+ K G + +A  +++ + + G KP    Y  +I G  R   
Sbjct: 219 ILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRD 278

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D AF  F+ M  +G  PN   Y+ LI      GR  EA +++ EMT  G+ P    F  
Sbjct: 279 LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338

Query: 303 VTDGLKNCGKHDLAEKI 319
               L + G+ + A KI
Sbjct: 339 PIVALCDMGRIEDAWKI 355



 Score = 42.4 bits (98), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD A++VF   +   C+  +  Y  L+  LC++     A  +  +M+ +    D+  + I
Sbjct: 823 VDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTI 882

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+N    +G      EFL  M     NP    R +L +  L
Sbjct: 883 LINGLLGAGYKDLCMEFLHIMETNRRNPSSHARTILAREAL 923


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 152/312 (48%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I  F K G +D     +N+         V+ YNS++ ALC+ +    A  ++  M
Sbjct: 90  SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +PD  TY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY---YSVCKLGLCADVSTY 195
             A+++ + M K+G   ++ T+ +L++     G +   VEM+     + + G+  +   +
Sbjct: 210 TEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 266

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            IL+ A +K   ++EA  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 267 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMID 326

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +G  P   VY  LI       ++  A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 327 EGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID--SHCKEGRV 384

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 385 IESEKLFDLMVR 396



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 121/237 (51%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +  +M ++G  P+  TY  ++   C SG++ +A  + ++M D+G +P     + L+ 
Sbjct: 282 AMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIH 341

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL      E A++++ +M+ +G  L+   FNS+I++ CK G V    +++  + ++G+  
Sbjct: 342 GLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 401

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+ TY  LI     AG +DEA +LL ++V  G KP    Y+ +I G  +  +  DA   F
Sbjct: 402 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLF 461

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            EM+  G  P+   Y +++    +  R   A    V +T+ G       ++++  GL
Sbjct: 462 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGL 518



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y++++    +       Y+    M+ +   P+  TY  ++ A C +  + +A
Sbjct: 83  DCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKA 142

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P     + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 143 MEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDY 202

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +++ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 203 LCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 262

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ ++    ++ + ++A   FS+M+ +G  PN   Y  +I +  + GR  +A  Y  
Sbjct: 263 HYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFE 322

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +M + GL+P +  ++ +  GL  C K + AE++ +LE+  R +
Sbjct: 323 QMIDEGLSPGNIVYNSLIHGLCTCNKWERAEEL-ILEMLDRGI 364



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 138/318 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           + T   M    +S +  T + II    K   VD A+EV             + YNS++  
Sbjct: 108 YSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHG 167

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A   +++M   G  PD  TY  L++  C +G+  EA++    M+ +G  P 
Sbjct: 168 FCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPE 227

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +     L+QG    G L     +++ M++ G   +   F+ L+    K  +VE  + ++ 
Sbjct: 228 ITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFS 287

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + GL  +  TY  +I  + K+G +++A      ++++G  P   +Y  +I G+    
Sbjct: 288 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 347

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +++ A     EM  +G   N   +  +I    + GR +E+      M  +G+ P    + 
Sbjct: 348 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYS 407

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + DG    GK D A K+
Sbjct: 408 TLIDGYCLAGKMDEATKL 425



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 124/268 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY+ L+N +C   +M++A    +EM   G +P +   ++++QGL       +AK
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + K G  L+L T+N ++  +CK+   +  + M+ ++C + L  +  T+ I+I A+
Sbjct: 494 ELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDAL 553

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L      +G  P    Y  + + +  +G  ++    F  M+  G   + 
Sbjct: 554 LKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDS 613

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 614 GMLNFIVRELLQRGEITRAGTYLSMIDE 641



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 3/235 (1%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN--PPVRGRDLL 128
           A  +   ++R+G +PD  +Y IL+N  C   + +EA E L  M+D G +  P V     +
Sbjct: 36  ARHVFDELLRRG-IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTV 94

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           + G    G L+      N+M+ Q    ++ T+NS+I  +CK+  V+  +E+  ++ K G+
Sbjct: 95  INGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGV 154

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D  TY  ++     +G   EA   L  +  DG +P    Y  ++  + + G+  +A  
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARK 214

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            F  M  +G  P    Y  L+      G  VE    L  M   G+ P    F ++
Sbjct: 215 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 269



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 126/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K+G    A ++F+  T    +  +  Y +LL            + L+  M
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 254

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +R G  P+   ++ILV A+    K+ EA     +M  +G NP       ++  L  +G +
Sbjct: 255 VRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRV 314

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A     +MI +G       +NSLI  +C   + E   E+   +   G+C +   +  +
Sbjct: 315 EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSI 374

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +  K G + E+ +L   +V  G KP    Y+ +I G    G+ D+A    + M   G 
Sbjct: 375 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 434

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P+   Y+ LI    +  R  +A     EM   G++P    ++++  GL
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 141/321 (43%), Gaps = 3/321 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+ +  T   +I    K G V++A+  F +          ++YNSL+  LC    
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 348

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   +   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 349 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 408

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+++LI   CK   ++  + ++  +   G
Sbjct: 409 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG 468

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + + G +   S Y  I+ G+ +    DDA 
Sbjct: 469 VSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +  V  +  GL P    + L+ + +
Sbjct: 529 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 588

Query: 308 KNCGKHDLAEKIELLEVSLRS 328
              G   L E+++ L +S+  
Sbjct: 589 IGQG---LLEELDQLFLSMED 606



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 112/261 (42%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
            + +NS++ + C+      +  L   M+R G  PD  TY+ L++ +C +GKM EA + L 
Sbjct: 368 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLA 427

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P       L+ G      ++ A  +  +M   G   D+ T+N +++ + ++ 
Sbjct: 428 SMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTR 487

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 E+Y  + K G   ++STY I++  + K  + D+A R+  NL     K     + 
Sbjct: 488 RTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFN 547

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + + G+ D+A   F      G  PN   Y ++       G   E     + M + 
Sbjct: 548 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDN 607

Query: 292 GLTPISRCFDLVTDGLKNCGK 312
           G T  S   + +   L   G+
Sbjct: 608 GCTVDSGMLNFIVRELLQRGE 628


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 7/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G  + A  +F K    +  +  V  Y S++   C+    + A  L  R
Sbjct: 347 THTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSR 406

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  P+  TY  L+N  C +G    A E +  M D+GF P +   + ++  L     
Sbjct: 407 MKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +++NK    G   D  T+  LI+  CK  +++  +  +  + K G  AD+    I
Sbjct: 467 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNI 526

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A  +   + E+ RL   +V  G  P    Y  +I G  + G FD A  +F  MK  G
Sbjct: 527 LIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHG 586

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
             P+   Y  LI+   +     EA      M + GL+P  ++R    VT   + C ++D 
Sbjct: 587 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTR----VTLAYEYCKRNDS 642

Query: 316 AEKIELLE 323
           A  + +LE
Sbjct: 643 ASAMIVLE 650



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 135/316 (42%), Gaps = 38/316 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS S  T++ ++E   + GL+D A  VF++                         
Sbjct: 196 MQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDE------------------------- 230

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                     M  +G  PD  ++ ++V      GK++EA  +L  M  +GF P      L
Sbjct: 231 ----------MSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTL 280

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L   G +  A     KMI  GF  +L  F SLI+ +CK G ++   EM   + + G
Sbjct: 281 ILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNG 340

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDA 246
              +V T+  LI  + K G  ++AFRL   LV  D +KP    Y  +I G  +  + + A
Sbjct: 341 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRA 400

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              FS MK +G  PN   YT LI    + G F  A   +  M + G  P    ++ V D 
Sbjct: 401 EMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDS 460

Query: 307 LKNCGKHDLAEKIELL 322
           L  C K    E  ELL
Sbjct: 461 L--CKKSRAPEAYELL 474



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 129/270 (47%), Gaps = 1/270 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L ALCE  L + A    R+MI  GF P+   +  L++  C  G +++A E L+EM   G
Sbjct: 281 ILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNG 340

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFC 176
           + P V     L+ GL   G+ E A ++  K+++   +  ++ T+ S+I   CK  ++   
Sbjct: 341 WKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRA 400

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
             ++  + + GL  +V+TY  LI    KAG  D A+ L++ + ++G +P    Y  +I  
Sbjct: 401 EMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDS 460

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
           + ++ +  +A+   ++    G   +   YT+LI    +     +A  +   M + G    
Sbjct: 461 LCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEAD 520

Query: 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
            R  +++        K   +E++  L VSL
Sbjct: 521 MRLNNILIAAFCRQKKMKESERLFQLVVSL 550



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 102/218 (46%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T + +I    K G  D A E+ N       +  +  YN+++ +LC+   
Sbjct: 407 MKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSR 466

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L+ +    G   D  TY IL+   C    +++A  F   M+  GF   +R  ++
Sbjct: 467 APEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNI 526

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        ++ ++++   ++  G V   ET+ S+I   CK G+ +  ++ ++++ + G
Sbjct: 527 LIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHG 586

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
              D  TY  LI  + K  M+DEA +L   +++ G  P
Sbjct: 587 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSP 624



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 88  RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147
           R Y +  ++  ++G +++A E ++ M               ++     G L  A  MV  
Sbjct: 151 RLYLVTADSLIANGNLQKAHEVMRCM---------------LRNFSEIGRLNEAVGMVMD 195

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M  QG      T N ++E   +SG +++   ++  +   G+C D S++K+++    + G 
Sbjct: 196 MQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIGCFRDGK 255

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           I EA R L  +++ G  P  +    I+  +   G  + A  +F +M   G  PN   +T 
Sbjct: 256 IQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTS 315

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           LI    + G   +A   L EM   G  P       + DGL
Sbjct: 316 LIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGL 355



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 115/291 (39%), Gaps = 11/291 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC--QQCVLLYNSLL 59
           ++ + LM       +  T + +I+   K      A E+ NK  AF+C  +   + Y  L+
Sbjct: 436 YELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNK--AFSCGLEADGVTYTILI 493

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
              C+      A A   RM + GF  D R   IL+ A+C   KM+E++   Q +   G  
Sbjct: 494 QEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLV 553

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P       ++ G    G  + A +  + M + G V D  T+ SLI  +CK   V+   ++
Sbjct: 554 PTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 613

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           Y ++   GL     T   L     K      A  +L  L     K +      +++ +  
Sbjct: 614 YEAMIDRGLSPPEVTRVTLAYEYCKRNDSASAMIVLEPL---DKKLWIRTVRTLVRKLCS 670

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +   A  FF ++  K    +R       T C   G+     N + ++TE
Sbjct: 671 EKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGK----NNLVADLTE 717


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 142/287 (49%), Gaps = 5/287 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   + G V  A+E+  +   F C    + +N L+  LC        + ++RR+
Sbjct: 84  SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 143

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  T+  +++ +C +GK+ +A     +M   G  P     ++L+ G    G 
Sbjct: 144 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 203

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L SA ++  +M +     D+ TF+SLI+  C+ G+++  + ++  + +  +  +V T+ I
Sbjct: 204 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 263

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I ++ K    DEA  LL+ L +     P   +Y P+I  + + G+ D+A      M+ K
Sbjct: 264 IIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 323

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS---RCF 300
           G  P++  YT+LI       R  EA  +  EM E G +P S    CF
Sbjct: 324 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCF 370



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 146/313 (46%), Gaps = 3/313 (0%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           Y  S   + LS ++       L+D +  + +K + F C+     YN L+ +L      H 
Sbjct: 5   YGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHD 64

Query: 71  AYALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             AL  R I+ + + PD  ++ +++   C  G++++A E ++ M++ G +P     ++LV
Sbjct: 65  VVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILV 124

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
            GL     +    +++ ++ + G  + ++ TF S+I   CK+G++E  + +Y  +   G+
Sbjct: 125 DGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGI 184

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +  TY +LI    K G +  A  +   +      P    ++ +I G  R GQ DDA  
Sbjct: 185 MPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALR 244

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGL 307
            +S+M      PN   ++++I    +  R  EA   L E+     + P +  ++ V D L
Sbjct: 245 IWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVL 304

Query: 308 KNCGKHDLAEKIE 320
             CGK D A  I 
Sbjct: 305 CKCGKVDEANLIR 317



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVK 66
           M  + +  +  T S+II    K    D A+ + N+     +      +YN ++  LC+  
Sbjct: 249 MAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCG 308

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  + + M  KG  PDK TY IL+  +C   ++ EA  F  EM + G +P     +
Sbjct: 309 KVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVN 368

Query: 127 LLVQGLLNAG 136
             +  LL AG
Sbjct: 369 CFISCLLKAG 378



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ + + G +D+A+ +++       Q  V  ++ ++ +LC+      A  L+  +
Sbjct: 225 TFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL 284

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R    P    Y  +++  C  GK+ EA    + M +KG  P      +L+ G      
Sbjct: 285 NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSR 344

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A    ++M++ G   D  T N  I  + K+G
Sbjct: 345 ISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 378


>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
          Length = 831

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 7/308 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++P +     +T +++++ +     ++ A  +  K  ++  +  V+ +N+L  A   +
Sbjct: 454 EMLQPND-----RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARI 508

Query: 66  KLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                A  +I  RM+     P+ RT   +VN +C  GKM EA  F   M + G +P +  
Sbjct: 509 GSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFV 568

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L++G LN   ++   ++V+ M + G   D+ TF++L+      G+++ C E+Y  + 
Sbjct: 569 FNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDML 628

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D+  + IL    ++AG  ++A ++L+ + + G +P   +Y  II G    G+  
Sbjct: 629 EGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMK 688

Query: 245 DAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            A   + +M  I G  PN   Y  LI   G   +  +A   L +M    + P  +   L+
Sbjct: 689 KAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLI 748

Query: 304 TDGLKNCG 311
            DG K+ G
Sbjct: 749 ADGWKSIG 756



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 10/297 (3%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G    A  +FN       +  ++ Y +L+ AL   K FH   +LI ++ + G  PD  
Sbjct: 331 ERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTI 390

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +  ++NA   SG + +A +  ++M + G  P     + L++G    G LE + ++++ M
Sbjct: 391 LFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM 450

Query: 149 IKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           ++   +  +  T N L++  C   ++E    + Y +   G+  DV T+  L  A ++ G 
Sbjct: 451 LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGS 510

Query: 208 IDEAF-----RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              A      R+LHN V    KP       I+ G    G+ ++A  FF  MK  G  PN 
Sbjct: 511 TCTAEDMIIPRMLHNKV----KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 566

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            V+  LI               +  M E G+ P    F  + +   + G     E+I
Sbjct: 567 FVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 40/321 (12%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T+  + II    + G +D A+++F K     C+     +N+L+    ++     + 
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 444

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FN----- 119
            L+  M+R   + P+ RT  ILV AWC+  K+ EA   + +M   G       FN     
Sbjct: 445 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 504

Query: 120 ------------------------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                                   P VR    +V G    G +E A +   +M + G   
Sbjct: 505 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L  FNSLI+      +++   E+   + + G+  DV T+  L+ A S  G +     + 
Sbjct: 565 NLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            +++E G  P    ++ + KG  R G+ + A    ++M+  G  PN  +YT +I+     
Sbjct: 625 TDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSA 684

Query: 276 GRFVEAANYLVEMTEM-GLTP 295
           G   +A     +M  + GL+P
Sbjct: 685 GEMKKAMQVYKKMCGIVGLSP 705



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           VR R  L+ GL+  G  + A  + N +I++G    L T+ +L+  + +       + +  
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            V K GL  D   +  +I A S++G +D+A ++   + E G KP  S +  +IKG  + G
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 242 QFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + +++      M + +   PN     +L+       +  EA N + +M   G+ P    F
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 498

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + +       G    AE +
Sbjct: 499 NTLAKAYARIGSTCTAEDM 517



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 183 VCKLGL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           +C  G  C DV +   L+  + + G   EA  + + L+E+GHKP    Y  ++  + R+ 
Sbjct: 309 ICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQK 368

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            F       S+++  G  P+  ++  +I      G   +A     +M E G  P +  F+
Sbjct: 369 HFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFN 428

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +  G    GK  L E   LL++ LR 
Sbjct: 429 TLIKGYGKIGK--LEESSRLLDMMLRD 453



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 2/233 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D R+   L+N     G+ +EA      + ++G  P +     LV  L    +  S   ++
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +K+ K G   D   FN++I    +SG ++  ++++  + + G     ST+  LI    K 
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 206 GMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           G ++E+ RLL  ++ D   +P       +++    + + ++A+    +M+  G  P+   
Sbjct: 438 GKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVT 497

Query: 265 YTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  L     R G    A + ++  M    + P  R    + +G    GK + A
Sbjct: 498 FNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550



 Score = 42.0 bits (97), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
              S++ + + + G  + A ++ N+   F  +  V++Y  ++   C       A  + ++
Sbjct: 637 HAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 696

Query: 78  MIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           M    G  P+  TY  L+  +  + +  +A+E L++M  K   P  +   L+  G  + G
Sbjct: 697 MCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIG 756

Query: 137 YLES 140
              S
Sbjct: 757 VSNS 760


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 124/269 (46%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M+
Sbjct: 141 FNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAML 200

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM  A E   EM  KG  P       L+ G    G ++
Sbjct: 201 ASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 260

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 261 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLI 320

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 321 DGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLX 380

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           P+   YTM+I    + G   + +  L EM
Sbjct: 381 PDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 124/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L+N +   G + E       M
Sbjct: 140 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 199

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 200 LASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRV 259

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 260 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTL 319

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +GL
Sbjct: 320 IDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 379

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +  + ++ +    C K D+ +  +LL+
Sbjct: 380 XPDAGTYTMIINEF--CKKGDVWKGSKLLK 407



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 2/239 (0%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +     P      +++ L+   Y +     
Sbjct: 66  SDIYVFSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGF 125

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    +
Sbjct: 126 YEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIR 185

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   ++  G  P    Y+ +I G+ +  + D A   F EM +KG  PN   
Sbjct: 186 LGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVT 245

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +T LI    + GR   A     +M    L P    ++ +  GL  C K DL +  +L++
Sbjct: 246 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGDLKQAHDLID 302



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 109/297 (36%), Gaps = 35/297 (11%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +                 +L  L ++K F   +     ++
Sbjct: 71  FSGLITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEIL 130

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 131 ECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLD 190

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M+  G                                      DV TY +LI
Sbjct: 191 EGFRLKSAMLASGXX-----------------------------------PDVYTYSVLI 215

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             + K   +D A  L   ++  G  P    +  +I G  + G+ D A   + +M  +   
Sbjct: 216 NGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 275

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           P+   Y  LI    + G   +A + + EM+  GL P    +  + DG    G  D A
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTA 332


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 8/295 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRK 81
           +I   GK G +D+A+++F +     C   V+ YN+++ AL E K       +   RM   
Sbjct: 308 MINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES 367

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  P   TY+IL++ +C + +M +A   L+EM +KGF P       L+  L  A   + A
Sbjct: 368 GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 427

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
            ++  ++ +         +  +I+ + K+G ++  + M+  + KLG   DV  Y  L+  
Sbjct: 428 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 487

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
           +++ GM+DEA   +  + E G  P  + Y  I+ G+ + G    A    S MK     P+
Sbjct: 488 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 547

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCGKHD 314
              Y  ++      G F EA+  + EM  +G       +DL+T    L+  GK D
Sbjct: 548 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFE-----YDLITYSSILEAIGKVD 597



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G  D+A+++ N+      Q    +Y  L+    +    HGA +L   M
Sbjct: 199 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   PD  TY  L+     +G++ EA  F  EM  +G  P     + ++  L  AG L
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 318

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKI 197
           + A ++  +M     +  + T+N++I+ + +S      V  ++   K  G+     TY I
Sbjct: 319 DDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSI 378

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   +++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 379 LIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC 438

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +  VY ++I   G+ GR  +A N   EM ++G  P    ++ +  GL   G  D A
Sbjct: 439 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA 497



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 141/322 (43%), Gaps = 9/322 (2%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS ++   G   +V  A+ +F +     CQ     YNS++
Sbjct: 109 MWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMI 168

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A + L EM + G 
Sbjct: 169 IMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 228

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +L+           A  +  +M  Q    D+ T+  LI  + K+G ++   E
Sbjct: 229 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRID---E 285

Query: 179 MYYSVCKL---GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            Y+  C++   G   D      +I  + KAG +D+A +L   +      P    Y  IIK
Sbjct: 286 AYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIK 345

Query: 236 GMFR-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            +F  + +  +   +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  
Sbjct: 346 ALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFP 405

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P    +  + D L    ++DLA
Sbjct: 406 PCPAAYCSLIDALGKAKRYDLA 427



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 2/320 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  + +  +++I  F K      A+ +F +     C+  V  Y  L+  L +   
Sbjct: 223 MKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 282

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY     M R+G  PD      ++N    +G++ +A +  QEM      P V   + 
Sbjct: 283 IDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNT 342

Query: 128 LVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +    S       +M + G      T++ LI+  CK+  +E  + +   + + 
Sbjct: 343 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 402

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI A+ KA   D A  L   L E+       +YA +IK + + G+ DDA
Sbjct: 403 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 462

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F EM   G  P+   Y  L++   R G   EA + +  M E G  P    ++++ +G
Sbjct: 463 INMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG 522

Query: 307 L-KNCGKHDLAEKIELLEVS 325
           L K  G H   E +  ++ S
Sbjct: 523 LAKTGGPHRAMEMLSNMKQS 542



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+  GK G +D+A+ +F++     C   V  YN+L+  L    +   A +
Sbjct: 440 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 499

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +RRM   G +PD  +Y I++N    +G    A E L  M      P V   + ++  L 
Sbjct: 500 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALS 559

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 560 HAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 595



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G +D A   F +     C+   +  N+++  L +      A  L + M
Sbjct: 269 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 328

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P   TY  ++ A + S  +  E   + + M + G +P      +L+ G      
Sbjct: 329 ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 388

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 389 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 448

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  +   + + G  P    Y  ++ G+ R G  D+A      M+  G
Sbjct: 449 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 508

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M +  + P    ++ V   L + G  + A 
Sbjct: 509 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAS 568

Query: 318 KI 319
           K+
Sbjct: 569 KL 570



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 116/242 (47%), Gaps = 3/242 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S S  T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 362 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 421

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A     EM+  G  P V   
Sbjct: 422 KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAY 481

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A   + +M + G + D+ ++N ++  + K+G     +EM  ++ +
Sbjct: 482 NALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 541

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  DV +Y  ++ A+S AGM +EA +L+  +   G +     Y+ I++ +   G+ D 
Sbjct: 542 STVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAI---GKVDH 598

Query: 246 AF 247
            +
Sbjct: 599 EY 600



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 114/263 (43%), Gaps = 2/263 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMRE 105
           N +     Y +L+  L  V+ +   + +I+ M+R    V      + +V    ++  +R+
Sbjct: 85  NYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQ 144

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLI 164
           A     ++  +   P  +  + ++  L++ G  E   Q+ N+M  +G    D  T+++LI
Sbjct: 145 AITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALI 204

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              CK G  +  +++   + ++G+      Y +LI    K      A  L   +     +
Sbjct: 205 SAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR 264

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I+G+ + G+ D+A+ FF EM+ +G  P+      +I   G+ GR  +A   
Sbjct: 265 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKL 324

Query: 285 LVEMTEMGLTPISRCFDLVTDGL 307
             EM  +   P    ++ +   L
Sbjct: 325 FQEMETLRCIPSVVTYNTIIKAL 347



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-----PVRGRDLLVQGLLN 134
           R+ +  D  TY  L++      +  E  + +QEM     NP     P    D+ V+ L N
Sbjct: 83  RRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSDV-VRMLGN 138

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVS 193
           A  +  A  +  ++  +      + +NS+I  +   G+ E   ++Y  +   G C  D  
Sbjct: 139 AKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTV 198

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI A  K G  D A +LL+ + E G +P   +Y  +I   F+      A   F EM
Sbjct: 199 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + +   P+   YT LI   G+ GR  EA ++  EM   G  P +   + + + L   G+ 
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 318

Query: 314 DLAEKI 319
           D A K+
Sbjct: 319 DDAMKL 324


>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g21222; AltName: Full=SNF1-like protein kinase AtC401
 gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
 gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
          Length = 831

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 149/308 (48%), Gaps = 7/308 (2%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E+++P +     +T +++++ +     ++ A  +  K  ++  +  V+ +N+L  A   +
Sbjct: 454 EMLQPND-----RTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARI 508

Query: 66  KLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                A  +I  RM+     P+ RT   +VN +C  GKM EA  F   M + G +P +  
Sbjct: 509 GSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFV 568

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L++G LN   ++   ++V+ M + G   D+ TF++L+      G+++ C E+Y  + 
Sbjct: 569 FNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDML 628

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  D+  + IL    ++AG  ++A ++L+ + + G +P   +Y  II G    G+  
Sbjct: 629 EGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMK 688

Query: 245 DAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
            A   + +M  I G  PN   Y  LI   G   +  +A   L +M    + P  +   L+
Sbjct: 689 KAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLI 748

Query: 304 TDGLKNCG 311
            DG K+ G
Sbjct: 749 ADGWKSIG 756



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 127/297 (42%), Gaps = 10/297 (3%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G    A  +FN       +  ++ Y +L+ AL   K FH   +LI ++ + G  PD  
Sbjct: 331 ERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTI 390

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +  ++NA   SG + +A +  ++M + G  P     + L++G    G LE + ++++ M
Sbjct: 391 LFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM 450

Query: 149 IKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           ++   +  +  T N L++  C   ++E    + Y +   G+  DV T+  L  A ++ G 
Sbjct: 451 LRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGS 510

Query: 208 IDEAF-----RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
              A      R+LHN V    KP       I+ G    G+ ++A  FF  MK  G  PN 
Sbjct: 511 TCTAEDMIIPRMLHNKV----KPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 566

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            V+  LI               +  M E G+ P    F  + +   + G     E+I
Sbjct: 567 FVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEI 623



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 40/321 (12%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           + P T+  + II    + G +D A+++F K     C+     +N+L+    ++     + 
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESS 444

Query: 73  ALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FN----- 119
            L+  M+R   + P+ RT  ILV AWC+  K+ EA   + +M   G       FN     
Sbjct: 445 RLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKA 504

Query: 120 ------------------------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
                                   P VR    +V G    G +E A +   +M + G   
Sbjct: 505 YARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHP 564

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +L  FNSLI+      +++   E+   + + G+  DV T+  L+ A S  G +     + 
Sbjct: 565 NLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
            +++E G  P    ++ + KG  R G+ + A    ++M+  G  PN  +YT +I+     
Sbjct: 625 TDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSA 684

Query: 276 GRFVEAANYLVEMTEM-GLTP 295
           G   +A     +M  + GL+P
Sbjct: 685 GEMKKAMQVYKKMCGIVGLSP 705



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           VR R  L+ GL+  G  + A  + N +I++G    L T+ +L+  + +       + +  
Sbjct: 319 VRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLIS 378

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            V K GL  D   +  +I A S++G +D+A ++   + E G KP  S +  +IKG  + G
Sbjct: 379 KVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIG 438

Query: 242 QFDDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           + +++      M + +   PN     +L+       +  EA N + +M   G+ P    F
Sbjct: 439 KLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTF 498

Query: 301 DLVTDGLKNCGKHDLAEKI 319
           + +       G    AE +
Sbjct: 499 NTLAKAYARIGSTCTAEDM 517



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 3/147 (2%)

Query: 183 VCKLGL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           +C  G  C DV +   L+  + + G   EA  + + L+E+GHKP    Y  ++  + R+ 
Sbjct: 309 ICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQK 368

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
            F       S+++  G  P+  ++  +I      G   +A     +M E G  P +  F+
Sbjct: 369 HFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFN 428

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328
            +  G    GK  L E   LL++ LR 
Sbjct: 429 TLIKGYGKIGK--LEESSRLLDMMLRD 453



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 100/233 (42%), Gaps = 2/233 (0%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D R+   L+N     G+ +EA      + ++G  P +     LV  L    +  S   ++
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           +K+ K G   D   FN++I    +SG ++  ++++  + + G     ST+  LI    K 
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKI 437

Query: 206 GMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
           G ++E+ RLL  ++ D   +P       +++    + + ++A+    +M+  G  P+   
Sbjct: 438 GKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVT 497

Query: 265 YTMLITMCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  L     R G    A + ++  M    + P  R    + +G    GK + A
Sbjct: 498 FNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550



 Score = 42.0 bits (97), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/124 (20%), Positives = 54/124 (43%), Gaps = 1/124 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
              S++ + + + G  + A ++ N+   F  +  V++Y  ++   C       A  + ++
Sbjct: 637 HAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKK 696

Query: 78  MIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136
           M    G  P+  TY  L+  +  + +  +A+E L++M  K   P  +   L+  G  + G
Sbjct: 697 MCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVVPTRKTMQLIADGWKSIG 756

Query: 137 YLES 140
              S
Sbjct: 757 VSNS 760


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 142/303 (46%), Gaps = 10/303 (3%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYA 73
           P T+ +  +I   GK G +D+AV++F +     C   V+ YN+++ AL E K       +
Sbjct: 329 PDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISS 388

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
              RM   G  P   TY+IL++ +C + +  +A   L+EM +KGF P       L+  L 
Sbjct: 389 WFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 448

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            A   + A ++  ++ +         +  +I+ + K+G ++  V ++  + KLG   +V 
Sbjct: 449 KAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVY 508

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y  L+  +++AGM+DEA   +  + E G  P  + Y  I+ G+ + G    A    S M
Sbjct: 509 AYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
           K     P+   Y  ++      G F EAA  + EM  +G       +DL+T    L+  G
Sbjct: 569 KQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFE-----YDLITYSSILEAIG 623

Query: 312 KHD 314
           K D
Sbjct: 624 KVD 626



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 151/389 (38%), Gaps = 73/389 (18%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS II   G   ++  AV +F +     CQ     YNS++
Sbjct: 138 MWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMI 197

Query: 60  FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A   L EM D G 
Sbjct: 198 IMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGM 257

Query: 119 NPPVRGRDL-----------------------------------LVQGLLNAGYLESAKQ 143
            P  +   +                                   L++GL  AG  + A  
Sbjct: 258 QPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYN 317

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL----------------- 186
             ++M ++G   D    N++I  + K+G ++  V+++  +  L                 
Sbjct: 318 FFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALF 377

Query: 187 -------------------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
                              G+     TY ILI    K    ++A  LL  + E G  P P
Sbjct: 378 ESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           + Y  +I  + +  ++D A   F E+K      +  VY ++I   G+ GR  +A N   E
Sbjct: 438 AAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDE 497

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           M ++G TP    ++ +  GL   G  D A
Sbjct: 498 MNKLGCTPNVYAYNALMSGLARAGMLDEA 526



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 135/320 (42%), Gaps = 2/320 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  + +  +++I  F K   V  A+ +F +     C+  V  Y  L+  L +   
Sbjct: 252 MKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGR 311

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  AY     M R+G  PD      ++N    +G++ +A +  +EM      P V   + 
Sbjct: 312 FDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNT 371

Query: 128 LVQGLLNA-GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +++ L  +   +        +M   G      T++ LI+  CK+   E  + +   + + 
Sbjct: 372 IIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEK 431

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G     + Y  LI A+ KA   D A  L   L E+       +YA +IK + + G+ DDA
Sbjct: 432 GFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 491

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F EM   G  PN   Y  L++   R G   EA   +  M E G  P    ++++ +G
Sbjct: 492 VNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNG 551

Query: 307 L-KNCGKHDLAEKIELLEVS 325
           L K  G H   E +  ++ S
Sbjct: 552 LAKTGGPHRAMEMLSNMKQS 571



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 105/213 (49%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S SP T S++I+ F K    + A+ +  +        C   Y SL+ AL + 
Sbjct: 391 ERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 450

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A+ L + +         R YA+++     +G++ +A     EM+  G  P V   
Sbjct: 451 KRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAY 510

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  AG L+ A   + +M + G + D+ ++N ++  + K+G     +EM  ++ +
Sbjct: 511 NALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 570

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
             +  D  +Y  ++ A+S AG+ +EA +L+  +
Sbjct: 571 SAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEM 603



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 78/156 (50%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+  GK G +D+AV +F++     C   V  YN+L+  L    +   A  
Sbjct: 469 SSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALT 528

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +RRM   G +PD  +Y I++N    +G    A E L  M      P     + ++  + 
Sbjct: 529 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMS 588

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 589 HAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGK 624



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G  D A   F++     C+   ++ N+++  L +      A  L   M
Sbjct: 298 TYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEM 357

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P   TY  ++ A + S  ++ E   + + M   G +P      +L+ G      
Sbjct: 358 GTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNR 417

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 418 TEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAV 477

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  L   + + G  P    Y  ++ G+ R G  D+A      M+  G
Sbjct: 478 MIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHG 537

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M +  + P +  ++ V   + + G  + A 
Sbjct: 538 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAA 597

Query: 318 KI 319
           K+
Sbjct: 598 KL 599



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 110/246 (44%), Gaps = 10/246 (4%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-----PVRGRDLLVQGLLN 134
           ++ +  D  TY  L+       +  E  + +QEM     NP     P+   D+ ++ L N
Sbjct: 112 KRNYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVR---NPVCVVTPMELSDI-IRMLGN 167

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVS 193
           A  +  A  +  ++  +      + +NS+I  +   G+ E   E+Y  +   G C  D  
Sbjct: 168 AKMISKAVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTV 227

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  LI A  K G  D A RLL+ + ++G +P   +Y  +I   F+      A   F EM
Sbjct: 228 TYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
           + +   P+   YT LI   G+ GRF EA N+  EM   G  P +   + + + L   G+ 
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRL 347

Query: 314 DLAEKI 319
           D A K+
Sbjct: 348 DDAVKL 353



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 113/263 (42%), Gaps = 2/263 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMRE 105
           N +     Y +L+  L  V+ +   + +I+ M+R    V      + ++    ++  + +
Sbjct: 114 NYEHDTSTYMALIRCLEVVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISK 173

Query: 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLI 164
           A     ++  +   P  +  + ++  L++ G  E   ++ N+M  +G    D  T+++LI
Sbjct: 174 AVAIFYQIKVRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALI 233

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
              CK G  +  + +   +   G+      Y +LI    K   +  A  L   +     +
Sbjct: 234 SAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCR 293

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I+G+ + G+FD+A+ FF EM+ +G  P+  V   +I   G+ GR  +A   
Sbjct: 294 PDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKL 353

Query: 285 LVEMTEMGLTPISRCFDLVTDGL 307
             EM  +   P    ++ +   L
Sbjct: 354 FEEMGTLQCIPSVVTYNTIIKAL 376


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 138/278 (49%), Gaps = 1/278 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ YN++L    +      AY+    M+ +G +PD  TY+ ++ A C +  M +A E L 
Sbjct: 201 VVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLN 260

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P     + ++ G  ++G  + A   + KM   G   ++ T++SL+  +CK+G
Sbjct: 261 TMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNG 320

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
                 +++ S+ K GL  D++TY+ L+   +  G + E   LL  +V +G +P   ++ 
Sbjct: 321 RSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFN 380

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    ++ + D A   FS+M+  G  PN   Y  +I +  + G   +A  Y  +M + 
Sbjct: 381 ILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDE 440

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           GLTP    +  +  GL  C K D AE++ +LE+  R +
Sbjct: 441 GLTPNIIVYTSLIHGLCTCDKWDKAEEL-ILEMLDRGI 477



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 150/308 (48%), Gaps = 8/308 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  F K G  D A   +++         V+ Y+S++ ALC+ +    A  ++  M++ G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +PD  TY  +++ +CSSG+ +EA   L++M   G  P V     L+  L   G    A+
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTYKILI 199
           ++ + M K+G   D+ T+ +L++     G +   VEM+  +    + G+  D   + ILI
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGAL---VEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A +K   +D+A  +   + + G  P    Y  +I  + + G  DDA  +F +M  +G  
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLT 443

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           PN  VYT LI       ++ +A   ++EM + G+   +  F+ + D   +C +  + E  
Sbjct: 444 PNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIID--SHCKEGRVIESE 501

Query: 320 ELLEVSLR 327
           +L ++ +R
Sbjct: 502 KLFDLMVR 509



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 35/339 (10%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T++ M+   +  +  T S ++    K+G    A ++F+  T    +  +  Y +LL    
Sbjct: 293 TLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYA 352

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW-------------------------- 97
                   +AL+  M+R G  PD   + IL+ A+                          
Sbjct: 353 TKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVV 412

Query: 98  ---------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
                    C SG + +A  + ++M D+G  P +     L+ GL      + A++++ +M
Sbjct: 413 CYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEM 472

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + +G  L+   FNS+I++ CK G V    +++  + ++G+  D+ TY  LI     AG +
Sbjct: 473 LDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           DEA +LL ++V  G KP    Y  +I G  R  + DDA   F EM   G  PN   Y ++
Sbjct: 533 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 592

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +       R   A    V +T+ G       ++++  GL
Sbjct: 593 LQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 631



 Score =  113 bits (282), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 135/301 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV N           + YNS+L   C       A   +++M
Sbjct: 238 TYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P+  TY+ L+N  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   D   FN LI    K  +V+  + ++  + + GL  +V  Y  +
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTV 417

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +D+A      ++++G  P   +Y  +I G+    ++D A     EM  +G 
Sbjct: 418 IDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGI 477

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   +  +I    + GR +E+      M  +G+ P    ++ + DG    GK D A K
Sbjct: 478 CLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATK 537

Query: 319 I 319
           +
Sbjct: 538 L 538



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 124/268 (46%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ YN+L+   C       A  L+  M+  G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL +     +AK
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + K G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +DEA  L      +G  P    Y+ + + +  +G  ++    F  M+  G   + 
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 727 RMLNSIVRKLLQRGDITRAGTYLFMIDE 754



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 35/331 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + L+ +      +I+   K G VD+A+  F +         +++Y SL+  LC    
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDK 461

Query: 68  FHGAYALIRR-----------------------------------MIRKGFVPDKRTYAI 92
           +  A  LI                                     M+R G  PD  TY  
Sbjct: 462 WDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNT 521

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C +GKM EA + L  M   G  P +     L+ G      ++ A  +  +M+  G
Sbjct: 522 LIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ T+N +++ +  +       E+Y S+ K G   ++STY I++  + K  + DEA 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+  NL     +     +  +I  + + G+ D+A   F+     G  P+   Y+++    
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
              G   E  +  + M E G +  SR  + +
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSI 732



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 46/312 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMR----------- 104
           AL +V     A A+ R  RM R G     P   TYAIL+   C +G++            
Sbjct: 61  ALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK 120

Query: 105 -----EAQEF--------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
                +A  F                    L+ M++ G  P V   + L++GL +    +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A ++++ M      G   D+ ++N+++    K G+ +     Y+ +   G+  DV TY 
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYS 240

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            +I A+ KA  +D+A  +L+ +V++G  P    Y  I+ G    GQ  +A     +M+  
Sbjct: 241 SIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSD 300

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  PN   Y+ L+    + GR  EA      MT+ GL P    +  +  G    G   L 
Sbjct: 301 GVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA--LV 358

Query: 317 EKIELLEVSLRS 328
           E   LL++ +R+
Sbjct: 359 EMHALLDLMVRN 370



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 2/161 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T ++I++          A E++   T    Q  +  YN +L  LC+  L   A 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + +       + RT+ I++ A    G+M EA++     S  G  P VR   L+ + L
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 701

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +  G LE    +   M + G   D    NS++  + + G++
Sbjct: 702 IEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDI 742



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++I+    K+ L D A+ +F      + Q     +N ++ AL +      A  L   
Sbjct: 622 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 681

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
               G VPD RTY+++       G + E  +    M + G +   R  + +V+ LL  G 
Sbjct: 682 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 741

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +  A   +  + ++ F L+  T + L+E+
Sbjct: 742 ITRAGTYLFMIDEKHFSLEASTASFLLES 770



 Score = 40.0 bits (92), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +   V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTY 95

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
            ILI    +AG +D  F  L N+V+ G +     + P++KG+    +  DA 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 3/319 (0%)

Query: 1   MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           MWK I E+++     V+P  LS +I   G   ++  A+ +F +  A  CQ     YNS++
Sbjct: 142 MWKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMI 201

Query: 60  FALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
             L     +   + L   M  +G   PD  TY+ L++A+C  G+   A   L EM + G 
Sbjct: 202 IMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGM 261

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P  +   +++        +  A  +  +M       D+ T+  LI  + K+G ++    
Sbjct: 262 QPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            Y+ + +     D      +I  + KAG +D+  +L   +      P    Y  IIK +F
Sbjct: 322 FYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALF 381

Query: 239 R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
             + +  + F +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 382 ESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP 441

Query: 298 RCFDLVTDGLKNCGKHDLA 316
             +  + D L    ++DLA
Sbjct: 442 AAYCSLIDALGKAKRYDLA 460



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 144/303 (47%), Gaps = 10/303 (3%)

Query: 17  PQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYA 73
           P T+ +  +I   GK G +D+ +++F +    +C   V+ YN+++ AL E K      ++
Sbjct: 333 PDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFS 392

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
              RM   G  P   TY+IL++ +C + ++ +A   L+EM +KGF P       L+  L 
Sbjct: 393 WFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALG 452

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            A   + A ++  ++ +         +  +I+ + K+G ++  + ++  + KLG   +V 
Sbjct: 453 KAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVY 512

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y  L+  +++A M+DEA   +  + E G  P  + Y  I+ G+ + G    A    + M
Sbjct: 513 AYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNM 572

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG--LKNCG 311
           K     P+   Y  +++     G F EAA  + EM  +G       +DL+T    L+  G
Sbjct: 573 KNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFE-----YDLITYSSILEAIG 627

Query: 312 KHD 314
           K D
Sbjct: 628 KVD 630



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 131/290 (45%), Gaps = 1/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G  D+A+ + N+      Q    +Y  ++    ++   HGA +L   M
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                 PD  TY  L+     +G++ EA  F  EM  +   P     + ++  L  AG L
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRL 351

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKS-GEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +   ++  +M     + ++ T+N++I+ + +S   V      +  +   G+     TY I
Sbjct: 352 DDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSI 411

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   I++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 412 LIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC 471

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +  VY ++I   G+ GR  +A N   EM+++G TP    ++ +  GL
Sbjct: 472 GSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGL 521



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 80/156 (51%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S S +  +++I+  GK G +D+A+ +F++ +   C   V  YN+L+  L    +   A  
Sbjct: 473 SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALT 532

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +R+M   G +PD  +Y I++N    +G    A E L  M +    P     + ++  L 
Sbjct: 533 TMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALS 592

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 593 HAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGK 628



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 112/237 (47%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   +S SP T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 395 ERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 454

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K +  A  L + +         R YA+++     +G++ +A     EMS  G  P V   
Sbjct: 455 KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAY 514

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL  A  L+ A   + KM + G + D+ ++N ++  + K+G     +EM  ++  
Sbjct: 515 NALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKN 574

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             +  D  +Y  ++ A+S AGM +EA  L+  +   G +     Y+ I++ + +  Q
Sbjct: 575 STIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVDQ 631



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/302 (20%), Positives = 129/302 (42%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK G +D A   +++    +C+   ++ N+++  L +         L   M
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEM 361

Query: 79  IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                +P+  TY  ++ A + S  ++ E   + + M   G +P      +L+ G      
Sbjct: 362 GVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNR 421

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 422 IEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 481

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + KAG +D+A  L   + + G  P    Y  ++ G+ R    D+A     +M+  G
Sbjct: 482 MIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHG 541

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y +++    + G    A   L  M    + P +  ++ V   L + G  + A 
Sbjct: 542 CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601

Query: 318 KI 319
           ++
Sbjct: 602 EL 603


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 139/290 (47%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T++ M+   LS    T + +I  + K G +  A  + ++ T+   +      N++L  LC
Sbjct: 410 TLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLC 469

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             K    AY L+    ++G++ D+ +Y IL+  +    K   A     EM ++   P   
Sbjct: 470 VEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTI 529

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             + ++ GL  +  ++ A   +N+M++ G V D  T+N +I   C  G VE   + +  +
Sbjct: 530 TYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEM 589

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +     DV T  IL+  + + GM+++A +L + LV  G       Y  II  + + G+F
Sbjct: 590 IENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKF 649

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           ++A+   +EM+ K   P++  Y ++I      GR  EA  + ++M E G+
Sbjct: 650 ENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGI 699



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 133/305 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IE+M   NL  +  T ++++  F   G +D A  + ++    N    V+ YN+L+   
Sbjct: 304 KVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGC 363

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + +     Y+LI  M +KG   +  TY I++   C  G M EA   L +M + G +P  
Sbjct: 364 SQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDC 423

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+     AG +  A +M+++M  +G  +D  T N+++  +C   +++    +  S
Sbjct: 424 VTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCS 483

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             K G   D  +Y ILI    K    D A  L   + E    P    Y  +I G+ +  +
Sbjct: 484 ASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRK 543

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            D A    +EM   G  P+   Y ++I      G   +A  +  EM E    P     ++
Sbjct: 544 VDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNI 603

Query: 303 VTDGL 307
           +  GL
Sbjct: 604 LLRGL 608



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 2/247 (0%)

Query: 13  LSVSPQTLSLIIEEFGK--HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L V P T S  I  +G      V +A++  NK + F C    + YN++L AL + +L   
Sbjct: 207 LGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQE 266

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L+  M  KG  P+K TY +LV  +C  G ++EA + ++ M+     P V   ++LV 
Sbjct: 267 ARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVN 326

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G  N G ++ A ++ ++M K   + D+ T+N+LI+   +  +      +   + K G+  
Sbjct: 327 GFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKC 386

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY I++  + K G + EA   L  + E+G  P    Y  +I    + G+   AF   
Sbjct: 387 NAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMM 446

Query: 251 SEMKIKG 257
            EM  KG
Sbjct: 447 DEMTSKG 453



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 130/299 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   LS +  T ++++  + + GL+  A +V    T  N    V  YN L+   C    
Sbjct: 274 MKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGK 333

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A+ +   M +   +PD  TY  L++         E    ++EM  KG        ++
Sbjct: 334 IDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNI 393

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++ +   G +  A   ++KM + G   D  T+N+LI   CK+G++     M   +   G
Sbjct: 394 ILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKG 453

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  D  T   ++  +     +DEA+ LL +  + G+      Y  +I G F+  + D A 
Sbjct: 454 LKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRAL 513

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EMK +   P+   Y  +I    +  +  +A + L EM E GL P    ++++  G
Sbjct: 514 NLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHG 572



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 122/263 (46%), Gaps = 3/263 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG---AYALIRRMIRKGFVPDKRTYAI 92
           A ++FNK    N +  +L  N+L+ +L           A  +++  I+ G VP+  ++ I
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+  +C   K+++A +++ +MS+ G  P     + ++  LL    L+ A+ ++  M  +G
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKG 278

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +  T+N L+   C+ G ++   ++   + +  L   V TY +L+      G IDEAF
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           R+   + +    P    Y  +I G  +     + +    EM  KG   N   Y +++   
Sbjct: 339 RIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWM 398

Query: 273 GRGGRFVEAANYLVEMTEMGLTP 295
            + G   EA   L +M E GL+P
Sbjct: 399 CKKGNMTEATTTLDKMEENGLSP 421



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 110/239 (46%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L++  C       A   + +M   G VPD  +Y  +++A      ++EA++ L +M 
Sbjct: 216 FNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMK 275

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG +P     ++LV G    G L+ A +++  M +   +  + T+N L+   C  G+++
Sbjct: 276 SKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKID 335

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + K+ +  DV TY  LI   S+     E + L+  + + G K     Y  I+
Sbjct: 336 EAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIIL 395

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           K M ++G   +A     +M+  G  P+   Y  LI    + G+  +A   + EMT  GL
Sbjct: 396 KWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGL 454



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 3/182 (1%)

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           A Q+ NKM +  +  +L T N+L+ ++ +   S  +    ++     KLG+  + +++ I
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI        + +A   ++ + E G  P    Y  I+  + +R    +A     +MK KG
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKG 278

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN+  Y ML+    R G   EA   +  MT   L P    ++++ +G  N GK D A 
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAF 338

Query: 318 KI 319
           +I
Sbjct: 339 RI 340



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II  F   G V+ A +  N+      +  V   N LL  LC   +   A  L   +
Sbjct: 565 TYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTL 624

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG   D  TY  ++++ C  GK   A + L EM  K   P      +++  L +AG +
Sbjct: 625 VSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRI 684

Query: 139 ESAKQMVNKMIKQGFVLD 156
           + A++   KM++ G V D
Sbjct: 685 KEAEEFTLKMVESGIVHD 702


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 157/347 (45%), Gaps = 38/347 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M  Y  +      S +I  F + G VD A+++ N      C+   + YN+ L  LC 
Sbjct: 248 LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLN---TMLCKPNTVCYNAALKGLCI 304

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            + +     L+  M+RKG  P++ T+++L+++ C +  +  A E L++M   G  P    
Sbjct: 305 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVN 364

Query: 125 RDLLVQGLLNAGYLESAKQMVNKM----------------------------IKQGFVLD 156
            ++++  L   G ++ A +++N M                            I Q F  D
Sbjct: 365 YNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFRDD 424

Query: 157 LE----TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
                 TFN LI+T+C++G V +  +++  + +     D+ TY  L+   S+ G+++ A 
Sbjct: 425 CPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEVAI 484

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           +L  ++     KP    Y  ++KG+ R  +++DA    +EM  K  PPN   + +LI   
Sbjct: 485 QLFRSM---PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSL 541

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + G    A   L +M   G TP    ++ + +G    G+ D A K+
Sbjct: 542 CQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKL 588



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 133/308 (43%), Gaps = 40/308 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M+ Y         ++II    + G VD+A+ + N   +  C+   L +N++L   
Sbjct: 348 EVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLN---SMVCKPDALGFNAVLKGF 404

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--------- 113
           C  + +H A  LI +M R      + T+ IL++  C +G +  A +  ++M         
Sbjct: 405 CRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDI 464

Query: 114 ----------SDKGF-------------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
                     S++G               P +   + +++GL  A   E A +++ +M+ 
Sbjct: 465 VTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 524

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    +  TFN LI ++C+ G V+  +E+   +   G   D+ TY  LI   S+ G +D+
Sbjct: 525 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDD 584

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV--YTML 268
           A +LL  +     KP    Y   +KG+ R  ++ DA    +EM      PN     Y   
Sbjct: 585 ALKLLSTM---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANH 641

Query: 269 ITMCGRGG 276
           + M  R G
Sbjct: 642 LLMPNRAG 649



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 144/320 (45%), Gaps = 47/320 (14%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ + + G +D+A+ +     +         YN++L  LC  K +  A  L+  M
Sbjct: 160 TYTALIDGYCRSGRLDDALRLI---ASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMAEM 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           IR    P++ T+A  + ++C +G +  A + L +M   G  P V     L+ G    G++
Sbjct: 217 IRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHV 276

Query: 139 ESAKQMVN--------------------------------KMIKQGFVLDLETFNSLIET 166
           + A  ++N                                +M+++G   +  TF+ LI +
Sbjct: 277 DQALDLLNTMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISS 336

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +C++  V+  VE+   + K G   D   Y I+I ++S+ G +D+A RLL+++V    KP 
Sbjct: 337 LCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPD 393

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMCGRGGRFVEAANYL 285
              +  ++KG  R  ++ DA    ++M     P     + +LI T+C  G       NY 
Sbjct: 394 ALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNG-----LVNYA 448

Query: 286 VEMTEMGLTPISRCF-DLVT 304
            ++ E    P  RC  D+VT
Sbjct: 449 TQVFEQ--MPRYRCTPDIVT 466



 Score = 53.9 bits (128), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 41/265 (15%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL+   C++G++ +A+  L  +        V   + LV G    G L  A++++      
Sbjct: 95  ILIKKLCATGRLADAERVLDALKAAAAADAV-SHNTLVAGYCRDGRLADAERVLGAARAT 153

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEM------------YYSVCKLGLC---------- 189
           G   ++ T+ +LI+  C+SG ++  + +            Y +V K GLC          
Sbjct: 154 G-AANVVTYTALIDGYCRSGRLDDALRLIASMPVAPDTYTYNTVLK-GLCIAKKWEEAEE 211

Query: 190 -----------ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
                       +  T+   I +  + G++D A +LL  +   G  P   +Y+ +I G  
Sbjct: 212 LMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFS 271

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
            +G  D A    + M  K   PN   Y   +       R+ +    + EM   G +P   
Sbjct: 272 EQGHVDQALDLLNTMLCK---PNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEA 328

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLE 323
            F ++   L  C  + +   +E+LE
Sbjct: 329 TFSMLISSL--CQNNLVDSAVEVLE 351



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 7/201 (3%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L++ L   G L  A+++++ +        + + N+L+   C+ G +    E      +
Sbjct: 94  NILIKKLCATGRLADAERVLDALKAAAAADAV-SHNTLVAGYCRDGRLAD-AERVLGAAR 151

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
               A+V TY  LI    ++G +D+A RL+ ++      P    Y  ++KG+    ++++
Sbjct: 152 ATGAANVVTYTALIDGYCRSGRLDDALRLIASM---PVAPDTYTYNTVLKGLCIAKKWEE 208

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    +EM     PPN   +   I    + G    A   L +M   G TP    +  + +
Sbjct: 209 AEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLIN 268

Query: 306 GLKNCGKHDLAEKIELLEVSL 326
           G    G  D A  ++LL   L
Sbjct: 269 GFSEQGHVDQA--LDLLNTML 287


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 152/350 (43%), Gaps = 37/350 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    S    T + +I+ +GK G ++    + ++     C   V+ YN+L+    +   
Sbjct: 225 MKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGW 284

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY+    M R G + +  T +  V+A+C  G +REA +   +M  +G  P       
Sbjct: 285 IEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTS 344

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-------------- 173
           LV G   AG L+ A  ++++M+ QG V ++ T+  +++ +CK G+V              
Sbjct: 345 LVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAG 404

Query: 174 ---------------------EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
                                E  +++   +   G+  DVS Y  LI  + K   +DEA 
Sbjct: 405 VKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAK 464

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LLH + + G +P   +Y  I+   F+ G+  +A     ++   G  PN   Y  LI   
Sbjct: 465 SLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGL 524

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            + G   EA ++  +M E+GL P  + +  + DG   C    L++ + L+
Sbjct: 525 CKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGF--CKIGSLSKAVHLM 572



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 123/280 (43%), Gaps = 4/280 (1%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S  P     ++     HGL+D+AV    +             N +L  L   +       
Sbjct: 130 SALPSVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNR----QGG 185

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L+RR+      P+  T+ I+++  C  G++ EA+     M   G +P V   + L+ G  
Sbjct: 186 LVRRLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 245

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             G LE  + +V++M K G   D+ T+N+LI    K G +E     +  + +LG+ A+V 
Sbjct: 246 KCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVV 305

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           T    + A  K G++ EA +L   +   G  P    Y  ++ G  + G+ DDA     EM
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 365

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
             +G  PN   YT+++    + G+   A + L  M   G+
Sbjct: 366 VHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGV 405



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 134/337 (39%), Gaps = 35/337 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   +  +  TLS  ++ F K GLV  A+++F +            Y SL+   C+   
Sbjct: 295 MKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 354

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM------------------------ 103
              A  L+  M+ +G VP+  TY ++V+  C  GK+                        
Sbjct: 355 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTT 414

Query: 104 -----------REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
                        A + L EM +KG    V     L+ GL     L+ AK +++KM   G
Sbjct: 415 LIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCG 474

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +   + ++++   K+G+    V + + +   GL  +V TY  LI  + KAG I EA 
Sbjct: 475 LRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAI 534

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
                + E G  P   +Y  +I G  + G    A    +EM  KG   ++ VYT LI   
Sbjct: 535 SHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGH 594

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            + G    A     +M E GL     C+     G  N
Sbjct: 595 MKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCN 631



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 115/255 (45%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A+++ N+      +  V LY +L++ LC+V+    A +L+ +M   G  P+   Y  +
Sbjct: 426 ERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTI 485

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           ++A+  +GK  EA   L ++ D G  P V     L+ GL  AG +  A    +KM + G 
Sbjct: 486 MDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGL 545

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             +++ + +LI+  CK G +   V +   +   G+  D   Y  LI    K G +  AF 
Sbjct: 546 DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFA 605

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++E G +     Y   I G        +A    SEM   G  P++  Y  LI    
Sbjct: 606 LKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQ 665

Query: 274 RGGRFVEAANYLVEM 288
           + G   EA++   EM
Sbjct: 666 KLGNMEEASSLQNEM 680



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+   K G +  A  +F +  A  C   V+ YNSL+    +         L+  M
Sbjct: 201 TFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G   D  TY  L+N +   G + +A  +  EM   G    V      V      G +
Sbjct: 261 RKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLV 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++  +M  +G + +  T+ SL++  CK+G ++  + +   +   GL  +V TY ++
Sbjct: 321 REAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G +  A  +L  +   G K    LY  +I G F     + A    +EMK KG 
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +  +Y  LI    +  +  EA + L +M + GL P +  +  + D     GK   +E 
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE--SEA 498

Query: 319 IELLE 323
           + LL 
Sbjct: 499 VALLH 503



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 129/302 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G V  A +V +       +   LLY +L+      K    A  L+  M
Sbjct: 376 TYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEM 435

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y  L+   C   K+ EA+  L +M D G  P       ++     AG  
Sbjct: 436 KNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKE 495

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +++K+   G   ++ T+ +LI+ +CK+G +   +  +  + +LGL  +V  Y  L
Sbjct: 496 SEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTL 555

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G + +A  L++ +V+ G      +Y  +I G  ++G    AF   ++M   G 
Sbjct: 556 IDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGL 615

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   YT  I+         EA   L EM   G+TP    ++ +    +  G  + A  
Sbjct: 616 QLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASS 675

Query: 319 IE 320
           ++
Sbjct: 676 LQ 677



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 102/222 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A  + +K      +   ++Y +++ A  +      A AL+ ++   G  P+  TY  
Sbjct: 460 LDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCA 519

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++  C +G + EA     +M + G +P V+    L+ G    G L  A  ++N+M+ +G
Sbjct: 520 LIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKG 579

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD   + SLI+   K G+++    +   + + GL  D+  Y   I       M+ EA 
Sbjct: 580 MSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEAR 639

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
            +L  ++  G  P  + Y  +I+   + G  ++A    +EM+
Sbjct: 640 GVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEME 681



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + Q  + +I+ F K G +  AV + N+          ++Y SL+    +   
Sbjct: 540 MRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGD 599

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
             GA+AL  +MI  G   D   Y   ++ +C+   M+EA+  L EM   G  P     + 
Sbjct: 600 LQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNC 659

Query: 128 LVQGLLNAGYLESAKQMVNKM 148
           L++     G +E A  + N+M
Sbjct: 660 LIRKYQKLGNMEEASSLQNEM 680



 Score = 40.0 bits (92), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 7/135 (5%)

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           S +  L+  ++  G++D+A R L  + +    P       I+  + R  Q       F  
Sbjct: 134 SVFDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEH 193

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +      PN   + ++I    + G  VEA    V M  MG +P    ++ + DG   CG+
Sbjct: 194 LP----APNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGE 249

Query: 313 HDLAEKIELLEVSLR 327
               E++ELL   +R
Sbjct: 250 ---LEEVELLVSEMR 261


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 149/308 (48%), Gaps = 5/308 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ F K G VD A ++F K         V+ Y+SL+  LC+ K    A  ++R+M+  G
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L++ + +SG  +E+    +EMS     P V   +  +  L   G ++ A+
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + + M+ +G   D+ ++ +L+     +G +     ++  +   G+  D   +  LI A 
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           ++ GM+D++  +  ++ + G  P    ++ +I    R G+ DDA   F+ M   G PP+ 
Sbjct: 339 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 398

Query: 263 PVYTMLIT-MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN-CGKHDLAEKIE 320
            VY+ LI   C R    V+A   + +M   G+ P   C    T  + N C +  +AE  +
Sbjct: 399 AVYSCLIQGQCNRRD-LVKAKELISDMLSKGIPP--PCIKFFTSIINNLCKEGRVAEGKD 455

Query: 321 LLEVSLRS 328
           ++++ + +
Sbjct: 456 VVDLIIHT 463



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 144/326 (44%), Gaps = 8/326 (2%)

Query: 4   TIELMKPYNLSVSPQ------TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
            +EL K  +    P+      T +++I  + +    D  + VF +         V  YN+
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNA 158

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+    +      A+ L  +M  +G +P+  TY+ L+N  C + +M +A+  L++M   G
Sbjct: 159 LIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAG 218

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P     + L+ G   +G  + + ++  +M     V D+   NS +  +CK G ++   
Sbjct: 219 VRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEAR 278

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           +++ S+   G   DV +Y  L+   + AG I     L + +V +G  P   ++  +I   
Sbjct: 279 DIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAY 338

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G  D +   F +M  +G  P+   ++ +I+   R GR  +A      M + G+ P +
Sbjct: 339 ARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDT 398

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLE 323
             +  +  G   C + DL +  EL+ 
Sbjct: 399 AVYSCLIQG--QCNRRDLVKAKELIS 422



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 124/276 (44%), Gaps = 6/276 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II    K G V    +V +       +  ++ +NSL+   C V     A  L+  M   G
Sbjct: 440 IINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVG 499

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  LV+ +C  G++ +A    ++M  K         ++++ GL  A     AK
Sbjct: 500 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 559

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICK---SGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
           +M ++MI+ G  + + T+ +++  +C+   + E    +E  +S   + +  D+ T+ I+I
Sbjct: 560 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS---MNVKFDILTFNIVI 616

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            A+ K G   EA  L   +   G  P    Y  +I  + +   F+DA   FS M+     
Sbjct: 617 RAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCT 676

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+  +   +I M    G   +A NYL ++ + G+ P
Sbjct: 677 PDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILP 712



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 117/260 (45%), Gaps = 3/260 (1%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           ++N+L+ A   + +   +  +   M ++G  PD  T++ +++A+C  G++ +A E    M
Sbjct: 330 VFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHM 389

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGE 172
            D G  P       L+QG  N   L  AK++++ M+ +G     ++ F S+I  +CK G 
Sbjct: 390 IDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGR 449

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V    ++   +   G   ++ T+  L+      G + EA  LL ++   G +P    Y  
Sbjct: 450 VAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNT 509

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ G  + G+ DDA   F +M  K        Y +++    +  R + A     EM E G
Sbjct: 510 LVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESG 569

Query: 293 LTPISRCFDLVTDGL--KNC 310
           +      +  V  GL   NC
Sbjct: 570 MAVSIHTYATVLGGLCRNNC 589



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 36/330 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F + G +D+A+E FN            +Y+ L+   C  +    A  LI  M
Sbjct: 365 TFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDM 424

Query: 79  IRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           + KG  P   + +  ++N  C  G++ E ++ +  +   G  P +   + LV G    G 
Sbjct: 425 LSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGN 484

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV-------------------- 177
           ++ A  +++ M   G   D+ T+N+L++  CK G ++  +                    
Sbjct: 485 MKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNI 544

Query: 178 ---------------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                          EM++ + + G+   + TY  ++  + +    DEA  LL  L    
Sbjct: 545 ILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMN 604

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            K     +  +I+ MF+ G+  +A   F+ +   G  P    Y ++IT   +   F +A 
Sbjct: 605 VKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDAD 664

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           N    M +   TP SR  + +   L N G+
Sbjct: 665 NLFSSMEKSSCTPDSRILNEIIRMLLNKGE 694



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ + KHG +D+A+ +F            + YN +L  L + +    A  +   M
Sbjct: 506 TYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEM 565

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G      TYA ++   C +    EA   L+                           
Sbjct: 566 IESGMAVSIHTYATVLGGLCRNNCTDEANMLLE--------------------------- 598

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                   K+       D+ TFN +I  + K G  +   E++ ++   GL   + TY+++
Sbjct: 599 --------KLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVM 650

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K    ++A  L  ++ +    P   +   II+ +  +G+   A  + S++  KG 
Sbjct: 651 ITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGI 710

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            P     ++LI +    G++ E    L E
Sbjct: 711 LPEATTTSLLIYLFSVNGKYREYIKLLPE 739



 Score = 46.2 bits (108), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 69/160 (43%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++VS  T + ++    ++   D A  +  K  + N +  +L +N ++ A+ +V     A 
Sbjct: 570 MAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAK 629

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L   +   G VP   TY +++          +A      M      P  R  + +++ L
Sbjct: 630 ELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRML 689

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           LN G +  A   ++K+ K+G + +  T + LI     +G+
Sbjct: 690 LNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGK 729



 Score = 40.8 bits (94), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 1/130 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G    A E+F   + +     +L Y  ++  L + + F  A  L   M
Sbjct: 611 TFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSM 670

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-LNAGY 137
            +    PD R    ++    + G++ +A  +L ++  KG  P      LL+    +N  Y
Sbjct: 671 EKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKY 730

Query: 138 LESAKQMVNK 147
            E  K +  K
Sbjct: 731 REYIKLLPEK 740


>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
 gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
 gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
          Length = 547

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 147/332 (44%), Gaps = 8/332 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  +E M+   L +S  T  LI+  + +   V  AVE F K + F  +  +  YN L+ 
Sbjct: 180 VWSLVETMRCRGL-LSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLID 238

Query: 61  ALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            L + K    A A+ + M RKG FVPD +TY +L+  W     +   +   QEM D G  
Sbjct: 239 TLSKSKQVKKAQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIR 298

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L+     +G  + A ++  +M   G +     +  LI  +     ++  ++ 
Sbjct: 299 PDVVAYGMLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKY 358

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +    K G   +V T   ++ A  +A     AF+++  + +    P    Y  I+  + +
Sbjct: 359 FEHYKKSGFPMEVPTCNAVVGAYCRASKFQHAFKMVDEMRKCKVGPNSRTYDVILHYLIK 418

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             +F++A+  F  M I G  P    YTM++ M    GR   A     +M E G+ P    
Sbjct: 419 SQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHM 478

Query: 300 FDLVTDGLKNCGKHDLAEKI----ELLEVSLR 327
           F  + +GL  C ++ L E      E+L+  +R
Sbjct: 479 FSALINGL--CFENRLEEACVYFQEMLDKGIR 508



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 122/278 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T ++++E +G    +     ++ +      +  V+ Y  L+ A C+      A  +   
Sbjct: 267 KTYTVLMEGWGHEKDLLMVKTMYQEMIDAGIRPDVVAYGMLISAFCKSGKCDEAIKVFYE 326

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G +P    Y +L+N   S  ++ EA ++ +     GF   V   + +V     A  
Sbjct: 327 MEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSGFPMEVPTCNAVVGAYCRASK 386

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A +MV++M K     +  T++ ++  + KS + E    ++  +   G    ++TY +
Sbjct: 387 FQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTM 446

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           ++      G +D A ++   + E G  P   +++ +I G+    + ++A  +F EM  KG
Sbjct: 447 MVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKG 506

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P   +++ L     +GGR   A    +++  +  TP
Sbjct: 507 IRPPGQLFSNLKEALVQGGRISLAQEVALKLDAIRKTP 544



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 67/147 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M+   +  + +T  +I+    K    + A  +F +     C+  +  Y  ++  
Sbjct: 391 FKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTMMVGM 450

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A  + ++M  KG +P    ++ L+N  C   ++ EA  + QEM DKG  PP
Sbjct: 451 FCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEMLDKGIRPP 510

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
            +    L + L+  G +  A+++  K+
Sbjct: 511 GQLFSNLKEALVQGGRISLAQEVALKL 537


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 1/268 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           VL YN++L AL +  L   A      M+  G  P+  TY ILV A C  G  +EA   L+
Sbjct: 123 VLAYNAVLLALSDASL-PSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLR 181

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G +P     + LV     AG ++ A+++V+ M + G   +L TFNS++  ICK+G
Sbjct: 182 DMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAG 241

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            +E   +++  + K GL  D  +Y  L+    K G   EA  +   +   G  P    + 
Sbjct: 242 RMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFT 301

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  M + G  + A     EM+ +G   N   +T LI    + G   +A   + EM + 
Sbjct: 302 SLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQC 361

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + P   C++ + +G    G+ D A ++
Sbjct: 362 RIQPSVVCYNALINGYCMVGRMDEAREL 389



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 15/305 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L ++  T + +I+ F K G +D+A+    +      Q  V+ YN+L+   C V  
Sbjct: 323 MRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGR 382

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+R M  KG  PD  TY+ +++A+C +G    A +  Q+M + G  P       
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSS 442

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++ L     L  A  +   MI  G   D  T+ SLI+  CK G VE  + ++  + K G
Sbjct: 443 LIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAG 502

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA---------------P 232
           +  DV TY +LI  +SK+    EA RLL  L  +   P    Y                 
Sbjct: 503 VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLA 562

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG   +G  ++A   +  +  +    +  VY++LI    R G  ++A ++  +M + G
Sbjct: 563 LLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCG 622

Query: 293 LTPIS 297
             P S
Sbjct: 623 FAPNS 627



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 2/283 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++++      G    A+ V        C    + YN+L+ A C       A 
Sbjct: 153 VAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAE 212

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G  P+  T+  +VN  C +G+M +A++   EM  +G  P     + LV G 
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G    A  +  +M ++G + D+ TF SLI  +CK+G +E  V +   + + GL  + 
Sbjct: 273 CKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNE 332

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI    K G +D+A   +  + +   +P    Y  +I G    G+ D+A     E
Sbjct: 333 ITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE 392

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           M+ KG  P+   Y+ +++   + G    A     +M E G+ P
Sbjct: 393 MEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLP 435



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 153/356 (42%), Gaps = 38/356 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +++M+   L  +  T + ++    K G +++A +VF++          + YN+L+   
Sbjct: 213 RLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGY 272

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN--- 119
           C+V   H A ++   M RKG +PD  T+  L++  C +G +  A   ++EM ++G     
Sbjct: 273 CKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNE 332

Query: 120 --------------------------------PPVRGRDLLVQGLLNAGYLESAKQMVNK 147
                                           P V   + L+ G    G ++ A+++V +
Sbjct: 333 ITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVRE 392

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M  +G   D+ T+++++   CK+G+     ++   + + G+  D  TY  LI  + +   
Sbjct: 393 MEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKR 452

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + +A  L  N++  G +P    Y  +I G  + G  + A     EM   G  P+   Y++
Sbjct: 453 LGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSV 512

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           LI    +  R  EA   L ++      P +  +D +   ++ C   +L   + LL+
Sbjct: 513 LINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDAL---MRCCRNAELKSVLALLK 565



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 15/243 (6%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+  + K+G   +A ++  +          + Y+SL+  LCE K    A+ L + M
Sbjct: 404 TYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNM 463

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I  G  PD+ TY  L++  C  G +  A     EM   G  P V    +L+ GL  +   
Sbjct: 464 ISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSART 523

Query: 139 ESAKQMVNKMIKQGFV---------------LDLETFNSLIETICKSGEVEFCVEMYYSV 183
           + A++++ K+  +  V                +L++  +L++  C  G +    ++Y S+
Sbjct: 524 KEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSI 583

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
                  D S Y +LI    + G + +A      +++ G  P  +    +I+G+F +G  
Sbjct: 584 LDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMV 643

Query: 244 DDA 246
            +A
Sbjct: 644 VEA 646



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 50/259 (19%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I    +   + +A  +F    +   Q   + Y SL+   C+      A +L   M
Sbjct: 439 TYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEM 498

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
           ++ G +PD  TY++L+N    S + +EAQ  L ++  +   P     D L++   NA   
Sbjct: 499 VKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELK 558

Query: 136 ------------GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
                       G +  A ++   ++ + + LD   ++ LI   C+ G V   +  +  +
Sbjct: 559 SVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQM 618

Query: 184 CKLGLC-----------------------------------ADVSTYKILIPAVSKAGMI 208
            + G                                     AD    K LI    K G +
Sbjct: 619 LQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLNCCSLADAEASKALIDLNLKEGNV 678

Query: 209 DEAFRLLHNLVEDGHKPFP 227
           D    +LH +  DG  P P
Sbjct: 679 DAVLDVLHGMARDGLLPSP 697


>gi|449468277|ref|XP_004151848.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g14770, mitochondrial-like, partial [Cucumis
           sativus]
          Length = 697

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 141/297 (47%), Gaps = 3/297 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           Y L++ P   T S +I+   K G ++ A    ++    +C   V+ Y+SL+    +  L 
Sbjct: 121 YQLNLVPNYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLL 180

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
           H A+ ++R+M+ K  +P+  TYAIL++    +G    A +   +M   G    V   D  
Sbjct: 181 HDAFKVLRKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAF 240

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           V  +  +G +E A+++V KM   G   DL  + +L++   KSG+V   + +   +    +
Sbjct: 241 VNNMKRSGRMEEAEELVAKMASGGLKPDLVNYTNLMDGFLKSGKVSSALNLAQEMTSKNV 300

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             D+ T+ +LI  + K G  D    +   + E G  P  + Y  ++ G F++G +  A  
Sbjct: 301 VFDIVTFNVLINCLFKLGKSDTE-SIYSAMREMGLSPDLATYNTMLNGNFKKGNWTSALE 359

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            ++EMK +   PN     ++I      GR   A + L EM  MGL P S  + ++ +
Sbjct: 360 LWNEMKSRKLIPNAITCNIMINGLCEAGRMENAIDILKEMVLMGLYPTSTTYRILLN 416



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 134/305 (43%), Gaps = 6/305 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   LS    T + ++    K G   +A+E++N+  +       +  N ++  LCE   
Sbjct: 329 MREMGLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGR 388

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE---MSDKGFNPPVRG 124
              A  +++ M+  G  P   TY IL+N    S K R A   LQ    + +         
Sbjct: 389 MENAIDILKEMVLMGLYPTSTTYRILLNI---SSKSRRADTILQTHELLVNMQLKVDKDV 445

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+  L   G    A  ++  M ++G + D  T+N+LI   C S  ++     Y ++ 
Sbjct: 446 YNILISNLCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTML 505

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
              +  D+ TY +L+  +SKAG+I EA  LL  + + G  P    Y  ++ G  +     
Sbjct: 506 SERVSPDIETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVPNACTYETLMCGHCKVRNTK 565

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +    + EM IKG  P    Y MLI    + G+  +A   + EM   G++P    +D++ 
Sbjct: 566 ECLRIYCEMVIKGFIPKPRAYNMLIGYFSKMGKMKQAKELMNEMQTKGVSPTCTTYDILI 625

Query: 305 DGLKN 309
            G  N
Sbjct: 626 CGWCN 630



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 122/261 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ + S+L+ LC+         L+R M + G   +  +Y IL++A   +GK+ EA   L 
Sbjct: 24  VVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLDALFKAGKVAEALMTLA 83

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  +G N  V    +L+ GL  +G ++ A+ +   + +   V +  T+++LI+  CK G
Sbjct: 84  CMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLG 143

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++       + + +     +V TY  LI    K G++ +AF++L  +V     P    YA
Sbjct: 144 DINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYA 203

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G F+ G  D A   +S+MK  G   N  +    +    R GR  EA   + +M   
Sbjct: 204 ILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASG 263

Query: 292 GLTPISRCFDLVTDGLKNCGK 312
           GL P    +  + DG    GK
Sbjct: 264 GLKPDLVNYTNLMDGFLKSGK 284



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 110/249 (44%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M+  G  PD  T+  ++   C  GK+ E +  L+EM   G N       +L+ 
Sbjct: 8   ALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTILLD 67

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L  AG +  A   +  MI +G   D+     LI+ + KSG+++    ++ ++ +L L  
Sbjct: 68  ALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVP 127

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY  LI    K G I+ A   LH + E    P    Y+ +I G  ++G   DAF   
Sbjct: 128 NYITYSALIDGRCKLGDINGAESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVL 187

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            +M  K   PN   Y +L+    + G    A +   +M + GL       D   + +K  
Sbjct: 188 RKMVHKNAMPNICTYAILLDGSFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRS 247

Query: 311 GKHDLAEKI 319
           G+ + AE++
Sbjct: 248 GRMEEAEEL 256



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 41/334 (12%)

Query: 2   WKTIEL-----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           W+ I L     MK   L  +   L   +    + G ++ A E+  K  +   +  ++ Y 
Sbjct: 214 WQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPDLVNYT 273

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+    +      A  L + M  K  V D  T+ +L+N     GK  + +     M + 
Sbjct: 274 NLMDGFLKSGKVSSALNLAQEMTSKNVVFDIVTFNVLINCLFKLGK-SDTESIYSAMREM 332

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P +   + ++ G    G   SA ++ N+M  +  + +  T N +I  +C++G +E  
Sbjct: 333 GLSPDLATYNTMLNGNFKKGNWTSALELWNEMKSRKLIPNAITCNIMINGLCEAGRMENA 392

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKA------------------------------- 205
           +++   +  +GL    +TY+IL+   SK+                               
Sbjct: 393 IDILKEMVLMGLYPTSTTYRILLNISSKSRRADTILQTHELLVNMQLKVDKDVYNILISN 452

Query: 206 ----GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               GM  +A  +L ++ E G     + Y  +I G         AF  +S M  +   P+
Sbjct: 453 LCKLGMTRKATAVLKDMEERGIIADTTTYNALIHGYCISSHLKRAFMTYSTMLSERVSPD 512

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              Y +L+    + G   EA + L E+ + GL P
Sbjct: 513 IETYNLLLGGLSKAGLIHEADDLLSEIKKRGLVP 546



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 26/298 (8%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           L++ E GK G+  N V                 Y  LL AL +      A   +  MI +
Sbjct: 45  LLLREMGKMGMNLNNVS----------------YTILLDALFKAGKVAEALMTLACMIVR 88

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G   D     +L++    SG+++EA+     +      P       L+ G    G +  A
Sbjct: 89  GNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLNLVPNYITYSALIDGRCKLGDINGA 148

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
           +  +++M ++  V ++ T++SLI    K G +    ++   +       ++ TY IL+  
Sbjct: 149 ESALHEMEEKDCVPNVITYSSLINGYVKQGLLHDAFKVLRKMVHKNAMPNICTYAILLDG 208

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
             KAG  D A  L   + + G K    +    +  M R G+ ++A    ++M   G  P+
Sbjct: 209 SFKAGWQDIALDLYSKMKQGGLKDNVFILDAFVNNMKRSGRMEEAEELVAKMASGGLKPD 268

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT-DGLKNC----GKHD 314
              YT L+    + G+   A N   EMT   +      FD+VT + L NC    GK D
Sbjct: 269 LVNYTNLMDGFLKSGKVSSALNLAQEMTSKNVV-----FDIVTFNVLINCLFKLGKSD 321



 Score = 42.4 bits (98), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 31/129 (24%)

Query: 23  IIEEFGKHGLVDNAVE----VFNKCTAFNCQQCVLLY---------------NSLLFALC 63
           ++ E  K GLV NA      +   C   N ++C+ +Y               N L+    
Sbjct: 535 LLSEIKKRGLVPNACTYETLMCGHCKVRNTKECLRIYCEMVIKGFIPKPRAYNMLIGYFS 594

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM------------REAQEFLQ 111
           ++     A  L+  M  KG  P   TY IL+  WC+  KM             EA+    
Sbjct: 595 KMGKMKQAKELMNEMQTKGVSPTCTTYDILICGWCNLLKMPDLGSTLKISYRAEAKRLFI 654

Query: 112 EMSDKGFNP 120
           EM+D+GF P
Sbjct: 655 EMNDRGFVP 663



 Score = 38.5 bits (88), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 63/145 (43%)

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +E  + +Y  +   G+  DV T+  ++  + K G + E   LL  + + G       Y  
Sbjct: 5   LEEALTLYEEMVGSGIFPDVVTFGSILYGLCKHGKLSEGKLLLREMGKMGMNLNNVSYTI 64

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++  +F+ G+  +A    + M ++G+  +    T+LI    + G+  EA      + ++ 
Sbjct: 65  LLDALFKAGKVAEALMTLACMIVRGNNFDVIACTVLIDGLFKSGQIKEAEYLFCNLYQLN 124

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAE 317
           L P    +  + DG    G  + AE
Sbjct: 125 LVPNYITYSALIDGRCKLGDINGAE 149


>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
 gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 163/357 (45%), Gaps = 41/357 (11%)

Query: 1   MWKTIELMKPYN-LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           +W  +E M+  N + ++ +   +++  F    +V+ A+EV ++   + C+    ++  LL
Sbjct: 134 VWALLEEMRRDNSVLITSEVFVVVMRRFASSRMVNKAIEVLDEMPKYGCEPDEYVFGCLL 193

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            ALC+      A +L   M R  F P  + +  L+  WC  GK+ EA+  L +M + GF 
Sbjct: 194 DALCKNGSVKEAASLFEDM-RVRFSPSLKHFTCLLYGWCKEGKLLEAKHVLVQMREAGFE 252

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P +   + L+ G   AG +  A  ++ ++ ++G   +  ++  LI+ +C   +++  + +
Sbjct: 253 PDIVVYNNLLSGYATAGKMGDAFDLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRV 312

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP-------------- 225
           +  + + G  ADV TY  L+    K  MID+ +++L ++++ GH P              
Sbjct: 313 FVEMERSGCDADVVTYTALVSGFCKWRMIDKGYQILQSMIQKGHMPNQLTYLHLMLAHEK 372

Query: 226 -------------------FP--SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
                               P  S+Y  +I+   + G+ +     ++EM++ G  P    
Sbjct: 373 KEELEECKELMGEMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDT 432

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           + ++I      G  VEA  Y  EM E GL   SR + ++ D L    +    EK+EL
Sbjct: 433 FVIMINGFLGHGYLVEACQYFKEMVERGLLS-SRQYGILKDLLNALLR---GEKLEL 485


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 129/295 (43%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W   E    Y    S    ++++  F K G +  A  VF+  T +  +  V+ +N+L+ 
Sbjct: 120 VWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMN 179

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              ++      + L   M   G  PD  TY++L+N  C   KM +A E   EM + G  P
Sbjct: 180 GYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVP 239

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  L+ G    G ++ A ++  +M+ Q    DL T+N+LI  +CK G+++   ++ 
Sbjct: 240 NGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLT 299

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  D  TY  LI    K G ++ AF     ++++  +     Y  +I G+ + 
Sbjct: 300 DEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQE 359

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+  DA     EM   G  P    YTM+I    + G     +  L EM   G  P
Sbjct: 360 GRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ + ++M  +G   D  T+ +LI+  CK G +E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYVPS 415



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        ++  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 EYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  ++E   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 3/247 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           + D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +    
Sbjct: 63  ISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHLMKLKYFKLVWG 122

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
              + ++ G+   L  FN L+ +  K GE+     ++ ++ K GL   V ++  L+    
Sbjct: 123 FYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +DE FRL + +   G +P    Y+ +I G+ +  + +DA   F EM   G  PN  
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGV 242

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL- 322
            +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLTD 300

Query: 323 EVSLRSV 329
           E+S++ +
Sbjct: 301 EMSMKGL 307


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 115/242 (47%), Gaps = 1/242 (0%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + +L+   C+   F  A AL+  M R+GF  D  T  ++V A+C  G+ R+       M 
Sbjct: 184 FRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMV 243

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G  P V      V GL   GY++ A  ++ +M+ +G   ++ T  SLI+ +CK G  E
Sbjct: 244 EMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTE 303

Query: 175 FCVEMYYSVCK-LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
               ++  + K      +V TY ++I    K G +  A  LL  +VE G  P  + Y  +
Sbjct: 304 RAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTL 363

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  R G FD AF   ++MK++G  PN   Y  +I    + G+  +A   L   T  GL
Sbjct: 364 IDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGL 423

Query: 294 TP 295
            P
Sbjct: 424 CP 425



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 141/325 (43%), Gaps = 7/325 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E+  P N+       +  ++   K G V  A  V  +      +  V  + SL+  L
Sbjct: 241 RMVEMGNPPNVV----NYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGL 296

Query: 63  CEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           C++     A+ L  ++++   + P+  TY +++  +C  GK+  A+  L  M ++G  P 
Sbjct: 297 CKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 356

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ G    G  + A +++NKM  +GF+ ++ T+N++I   CK G+++   ++  
Sbjct: 357 TNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLR 416

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
                GLC D  TY +LI    K G I  A  L + + E+   P    Y  II    ++ 
Sbjct: 417 MATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQR 476

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           Q + +   F +    G  P +  YT +I    R G+   A      M + G  P    + 
Sbjct: 477 QMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYG 536

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSL 326
            +  GL  C +  L E   L E  L
Sbjct: 537 ALISGL--CKESRLEEARALFETML 559



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 124/295 (42%), Gaps = 1/295 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLF 60
           +  +E M    L  +  T + +I+   K G  + A  +F K   + + +  V  Y  ++ 
Sbjct: 271 FHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIG 330

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             C+      A  L+ RM+ +G  P+  TY  L++  C  G    A E + +M  +GF P
Sbjct: 331 GYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLP 390

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   + ++ G    G ++ A +++     QG   D  T+  LI   CK G + + ++++
Sbjct: 391 NIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLF 450

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + +     D+ TY  +I    +   ++++ +L    +  G  P    Y  +I G  R 
Sbjct: 451 NQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRV 510

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+   A   F  M   G  P+   Y  LI+   +  R  EA      M +  + P
Sbjct: 511 GKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALFETMLDKHMVP 565



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 1/245 (0%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G  PD R++  LV   C  G+  EA   L  M  +GF+       ++V+     G     
Sbjct: 176 GVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDV 235

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             +  +M++ G   ++  + + ++ +CK G V+    +   +   GL  +V T+  LI  
Sbjct: 236 PGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 202 VSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           + K G  + AFRL   LV+   +KP    Y  +I G  + G+   A      M  +G  P
Sbjct: 296 LCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           N   YT LI    RGG F  A   + +M   G  P    ++ +  G    GK   A K+ 
Sbjct: 356 NTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVL 415

Query: 321 LLEVS 325
            +  S
Sbjct: 416 RMATS 420



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 4/224 (1%)

Query: 97  WCSSGKMREAQEFL---QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           W     +R+   F    Q     G  P  R    LV G    G  E A  ++  M ++GF
Sbjct: 153 WVLRVGLRQRHHFAHARQAFDGMGVRPDARSFRALVLGCCQEGRFEEADALLAAMWREGF 212

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
            LD  T   ++   C+ G       ++  + ++G   +V  Y   +  + K G + +AF 
Sbjct: 213 SLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFH 272

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKGHPPNRPVYTMLITMC 272
           +L  +V  G KP    +  +I G+ + G  + AF  F ++ K   + PN   YT++I   
Sbjct: 273 VLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGY 332

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            + G+   A   L  M E GL P +  +  + DG    G  D A
Sbjct: 333 CKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRA 376



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/242 (19%), Positives = 95/242 (39%), Gaps = 3/242 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K + +     L     T +++I E  K G +  A+++FN+    +C   +  Y +++  
Sbjct: 412 YKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAM 471

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+ +    +  L  + +  G VP K+TY  ++  +C  GK   A +  + M   G  P 
Sbjct: 472 YCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD 531

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ GL     LE A+ +   M+ +  V    T  +L    C+  +    V    
Sbjct: 532 PITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLD 591

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + K            L+  +S    +D A   L N+++  +    + Y   I   +   
Sbjct: 592 GLDKR---QQAHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINSCYESN 648

Query: 242 QF 243
           ++
Sbjct: 649 RY 650



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 2/174 (1%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L  A  M+ ++   G  L +ET N ++    +  +         +   +G+  D  +++ 
Sbjct: 129 LREATDMLLELRSHGLPLVVETANWVLRVGLR--QRHHFAHARQAFDGMGVRPDARSFRA 186

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    + G  +EA  LL  +  +G     +    +++   R+G+F D    F  M   G
Sbjct: 187 LVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMG 246

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +PPN   YT  +    + G   +A + L EM   GL P       + DGL   G
Sbjct: 247 NPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIG 300


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 148/310 (47%), Gaps = 14/310 (4%)

Query: 2   WKTIEL----MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           W+ +E     M   N   S  TLS++I    + GL   A+ +  K +  +C   ++ YN+
Sbjct: 273 WEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNA 332

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           ++  LCE     GA  L+  M   G  P+  TY ILV   C++ +  +A++ + +MS   
Sbjct: 333 VVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTD 392

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P +   + ++  L   G    A ++  +M ++G   +  T++S+IE + K+G++E  +
Sbjct: 393 CLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSL 452

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E+   +   G   +++ Y +L   +++   + EA +++H L + G  P   LY  I+ G+
Sbjct: 453 ELLNEMGSKGFNPEIN-YHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGL 511

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            R G+ D A    S M   G  P+   Y++LI      G       Y+ E  E+  T  S
Sbjct: 512 CRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEG-------YMKEARELLSTLSS 564

Query: 298 RCFDLVTDGL 307
           R  D++ D L
Sbjct: 565 R--DVIVDNL 572



 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 136/293 (46%), Gaps = 2/293 (0%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            G V +A+ + +      C   V+ YN LL A C+ + +  A  LI  M  +G  P   T
Sbjct: 165 RGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVT 224

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y ++++  C  G +  A+E L  +   G  P     + +++GL  AG  E  ++++ +M 
Sbjct: 225 YNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMF 284

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
            +       T + +I ++C+ G  +  + +   + K    A++ TY  ++  + + G +D
Sbjct: 285 SENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVD 344

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  LL N+  DG KP    Y  ++KG+    +++DA    ++M      P+   +  +I
Sbjct: 345 GALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTII 404

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
               + G  ++A     +M E G  P S  +  V +GL   GK  + + +ELL
Sbjct: 405 GFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGK--MEQSLELL 455



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/315 (22%), Positives = 147/315 (46%), Gaps = 1/315 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+LM+    + +  T ++I++   + G VD A E+ N   ++ C    + YN++L  L  
Sbjct: 210 IDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRT 269

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +     LI  M  +   P + T ++++++ C  G  + A   L++MS       +  
Sbjct: 270 AGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVT 329

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + +V GL   G+++ A  +++ M   G   ++ T+N L++ +C +   E   ++   + 
Sbjct: 330 YNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMS 389

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +     D+ T+  +I  + + G+  +A  +   + E G  P    Y+ +I+G+ + G+ +
Sbjct: 390 QTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKME 449

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            +    +EM  KG  P    Y +L        + VEA   + ++ + G++P +  ++ + 
Sbjct: 450 QSLELLNEMGSKGFNPEIN-YHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTIL 508

Query: 305 DGLKNCGKHDLAEKI 319
            GL   GK D A  I
Sbjct: 509 LGLCRNGKTDQAIDI 523



 Score = 74.3 bits (181), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 14  SVSPQTLSL---IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           S+ P  ++L   ++ +  + G   +A  V   C +       + Y++L    C V     
Sbjct: 82  SLCPPDVALANRLVRDLCRRGRPADAARVVEACGS---AATAVTYSALADGYCRVGRLDE 138

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  ++  M     +P    Y  L++A C  G++R+A   L  M  +G  P V   ++L++
Sbjct: 139 ARRVVDGM---PVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLE 195

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
                     A ++++ M  +G      T+N +++ +C+ G+V++  E+  S+   G   
Sbjct: 196 AACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTP 255

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +   Y  ++  +  AG  ++   L+  +  +   P  +  + +I  + + G F  A    
Sbjct: 256 NTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLL 315

Query: 251 SEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLK 308
            +M       N   Y  +++ +C +G   V+ A YL+  M   G  P    ++++  GL 
Sbjct: 316 EKMSKHDCTANIVTYNAVVSGLCEQG--HVDGALYLLSNMQTDGCKPNIFTYNILVKGLC 373

Query: 309 NCGKHDLAEKI 319
           N  + + AE +
Sbjct: 374 NAERWEDAEDL 384



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 17/138 (12%)

Query: 1   MWKTIELM-----KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLY 55
           M +++EL+     K +N  ++   L+  + E  K  LV+ A+++ +K          +LY
Sbjct: 448 MEQSLELLNEMGSKGFNPEINYHLLAECLNEEDK--LVE-AIQMVHKLQDTGISPQAVLY 504

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N++L  LC       A  ++  M+  G +PD+ TY+IL+      G M+EA+E L  +S 
Sbjct: 505 NTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLS- 563

Query: 116 KGFNPPVRGRDLLVQGLL 133
                    RD++V  L+
Sbjct: 564 --------SRDVIVDNLI 573


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 117/237 (49%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  ++  M++ G +PD  TY  +++ +CSSG+ +EA   L++M   G  P V     L+ 
Sbjct: 228 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 287

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G    A+++ + M K+G   D+ T+ +L++  CK G V    +++  + ++G+  
Sbjct: 288 YLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKP 347

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  R  + DDA   F
Sbjct: 348 DIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALF 407

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            EM   G  PN   Y +++       R   A    V +T+ G       ++++  GL
Sbjct: 408 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 130/287 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+EV N           + YNS+L   C       A   +++M   G  P+  TY+ 
Sbjct: 225 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 284

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N  C +G+  EA++    M+ +G  P +     L+QG    G +  ++++ + M++ G
Sbjct: 285 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIG 344

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              D+ T+N+LI+  C +G+++   ++  S+  +G+  D+ TY  LI    +   +D+A 
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDAL 404

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   +V  G  P    Y  I++G+F   +   A   +  +   G       Y +++   
Sbjct: 405 ALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGL 464

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            +     EA      +    L   +R F+++   L  CG+ D A+ +
Sbjct: 465 CKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDL 511



 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 129/288 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    L     T   +++   K G V  + ++F+       +  ++ YN+L+   
Sbjct: 300 KIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGC 359

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A  L+  M+  G  PD  TY  L+N +C   +M +A    +EM   G +P +
Sbjct: 360 CLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNI 419

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++++QGL +     +AK++   + K G  L+L T+N ++  +CK+   +  + M+ +
Sbjct: 420 ITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQN 479

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +C   L  +  T+ I+I A+ K G +DEA  L      +G  P    Y+ + + +  +G 
Sbjct: 480 LCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGS 539

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            ++    F  M+  G   +  +   ++    + G    A  YL  + E
Sbjct: 540 LEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDE 587



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 132/300 (44%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           T++ M+   +  +  T S ++    K+G    A ++F+  T    +  +  Y +LL   C
Sbjct: 266 TLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHC 325

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      +  L   M+R G  PD  TY  L++  C +GKM EA + L  M   G  P + 
Sbjct: 326 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 385

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ G      ++ A  +  +M+  G   ++ T+N +++ +  +       E+Y S+
Sbjct: 386 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 445

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K G   ++STY I++  + K  + DEA R+  NL     +     +  +I  + + G+ 
Sbjct: 446 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 505

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D+A   F+     G  P+   Y+++       G   E  +  + M E G +  SR  + +
Sbjct: 506 DEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSI 565



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/267 (27%), Positives = 124/267 (46%), Gaps = 17/267 (6%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM   G +PD  +Y  L+   C   + +EA E L
Sbjct: 127 AITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELL 186

Query: 111 QEMSDK--GFNPP--VRGRDLL-------VQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
             M+D   G +PP  V    +L       +Q  L A  ++ A +++N M+K G + D  T
Sbjct: 187 HMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMT 246

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +NS++   C SG+ +  +     +   G+  +V TY  L+  + K G   EA ++  ++ 
Sbjct: 247 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 306

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           + G +P  + Y  +++G  + G+  ++   F  M   G  P+   Y  LI  C   G+  
Sbjct: 307 KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 366

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDG 306
           EA   L  M  +G+ P     D+VT G
Sbjct: 367 EATKLLASMVSVGVKP-----DIVTYG 388



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 125/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I+  +   G    A+    K  +   +  V+ Y+SL+  LC+      A  +   M
Sbjct: 246 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 305

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G  PD  TY  L+   C  G++ E+++    M   G  P +   + L+ G   AG +
Sbjct: 306 TKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 365

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +++  M+  G   D+ T+ +LI   C+   ++  + ++  +   G+  ++ TY I+
Sbjct: 366 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 425

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +        A  L  ++ + G +   S Y  I+ G+ +    D+A   F  + +   
Sbjct: 426 LQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDL 485

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                 + ++I    + GR  EA +     +  GL P  R + L+ + L
Sbjct: 486 QLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENL 534



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 19/284 (6%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P   TYAIL+   C +G++      L  +  
Sbjct: 61  ALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVK 120

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMV-NKMIKQGFVLDLETFNSLIETICKSGEVE 174
           KGF         L++GL        A  +V  +M + G + D+ ++N+L++ +C     +
Sbjct: 121 KGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQ 180

Query: 175 FCVEMYYSVCKL---GLCADVSTYKILIPAVSKAGM--------IDEAFRLLHNLVEDGH 223
             +E+ + +      G   DV +Y  ++    K G+        +D+A  +L+ +V++G 
Sbjct: 181 EALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGV 240

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    Y  I+ G    GQ  +A     +M+  G  PN   Y+ L+    + GR  EA  
Sbjct: 241 MPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARK 300

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
               MT+ GL P    +  +  G  +C +  + E  +L ++ +R
Sbjct: 301 IFDSMTKRGLEPDIATYRTLLQG--HCKEGRVIESEKLFDLMVR 342



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 15/299 (5%)

Query: 36  AVEVFNK---CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           AV  +N+     A      V  Y  L+   C        +A +  +++KGF  D  T+  
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 93  LVNAWCSSGKMREAQEF-LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           L+   C+  +  +A +  L+ M++ G  P V   + L++GL +    + A ++++ M   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 152 ---GFVLDLETFNSLIETICKSG--------EVEFCVEMYYSVCKLGLCADVSTYKILIP 200
              G   D+ ++N+++    K G         ++  +E+  ++ K G+  D  TY  ++ 
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 252

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
               +G   EA   L  +  DG +P    Y+ ++  + + G+  +A   F  M  +G  P
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEP 312

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +   Y  L+    + GR +E+      M  +G+ P    ++ + DG    GK D A K+
Sbjct: 313 DIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKL 371



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 65/149 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T ++I+    K+ L D A+ +F      + Q     +N ++ AL +      A  L   
Sbjct: 455 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAA 514

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
               G VPD RTY+++       G + E  +    M + G +   R  + +V+ LL  G 
Sbjct: 515 HSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGD 574

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIET 166
           +  A   +  + ++ F L+  T + L+E+
Sbjct: 575 ITRAGTYLFMIDEKHFSLEASTASFLLES 603



 Score = 40.0 bits (92), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +   V TY
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAA-AVSRYNRMARAGAGKVTPTVHTY 95

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
            ILI    +AG +D  F  L N+V+ G +     + P++KG+    +  DA 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 132/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   +I    K G    A+         NC+  V++Y++++ +LC+ +    A +L   M
Sbjct: 161 TYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDM 220

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P+  TY+ L++  C  G  +EA      M  +   P     + LV  L   G +
Sbjct: 221 LAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMV 280

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  +V+ MI+     D+ T+NSL++  C   E+   V ++ ++ + G    V +Y  L
Sbjct: 281 VKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTL 340

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K  ++D+A  L   + + G  P    Y  +I G+   G+  DA   F EM + G 
Sbjct: 341 INGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 400

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +L     +  R  EA   L  +    L P    + +V DG+   G+ + A  
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 460

Query: 319 I 319
           +
Sbjct: 461 L 461



 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/258 (28%), Positives = 126/258 (48%), Gaps = 1/258 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           L +N+L+ ALC+  +   A+ ++  MI+    PD  TY  L++  C   +M +       
Sbjct: 265 LTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDT 324

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M  KG  P V     L+ G      ++ A  +  +M +QG + D  T+N+LI  +C  G 
Sbjct: 325 MVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGR 384

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +   + +++ +   G   D+ TY+IL   + K   + EA  LL  +      P   +Y+ 
Sbjct: 385 LRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSI 444

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++ GM R G+ + A   FS++  KG  P+   YT++I    + G   EA+    EM E G
Sbjct: 445 VMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENG 504

Query: 293 LTPISRCFDLVTDG-LKN 309
            +P +  ++L+T G L+N
Sbjct: 505 CSPNACTYNLITRGFLRN 522



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 133/307 (43%), Gaps = 5/307 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G+V  A  V +     + +  V+ YNSL+   C          +   M
Sbjct: 266 TFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTM 325

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +RKG VP   +Y  L+N +C    M +A    +EMS +G  P     + L+ GL + G L
Sbjct: 326 VRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 385

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M+  G + DL T+  L + +CK+  +   + +   +    L  D+  Y I+
Sbjct: 386 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 445

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + +AG ++ A  L   L   G  P    Y  +I G+ ++G   +A   F EM   G 
Sbjct: 446 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGC 505

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT-PISRCFDLV----TDGLKNCGKH 313
            PN   Y ++     R    + A     EM   G +  +S    LV     DGL    K 
Sbjct: 506 SPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQ 565

Query: 314 DLAEKIE 320
            L E ++
Sbjct: 566 ILCEFVQ 572



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 129/305 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + +  +  TL+++I  F     +  A  V         Q     + +L+  LC    
Sbjct: 80  MDSFGIPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGK 139

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +M  +GF PD  TY  L+N  C  G    A  FL+ M  +   P V     
Sbjct: 140 IGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYST 199

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++  L     L  A  + + M+ +G   +  T++SLI  +C  G  +  + ++Y++    
Sbjct: 200 IIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRK 259

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  T+  L+ A+ K GM+ +A  ++  +++   KP    Y  ++ G   R +     
Sbjct: 260 IMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTV 319

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  M  KG  P+   YT LI    +     +A     EM++ GL P +  ++ +  GL
Sbjct: 320 NVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGL 379

Query: 308 KNCGK 312
            + G+
Sbjct: 380 CHVGR 384



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 6/297 (2%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D+A+ +FN+         ++ ++ LL ++  +K +    +L ++M   G   +  T  I
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L+N++C   ++  A   L ++   G+ P       L++GL   G +  A Q+ +KM  +G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D+ T+ +LI  +CK G     +    S+ +      V  Y  +I ++ K   + EA 
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEAL 214

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TM 271
            L  +++  G  P    Y+ +I G+   G + +A   F  M  +   P++  +  L+  +
Sbjct: 215 SLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDAL 274

Query: 272 CGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           C  G   V  A+Y+V+ M +  L P    ++ + DG  +C + ++ + + + +  +R
Sbjct: 275 CKEG--MVVKAHYVVDVMIQSDLKPDVVTYNSLMDG--HCLRSEMGKTVNVFDTMVR 327



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 98/215 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    L     T + +I      G + +A+ +F++   +     ++ Y  L   LC+ 
Sbjct: 358 EEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKN 417

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L++ +      PD   Y+I+++  C +G++  A++   ++S KG +P VR  
Sbjct: 418 HRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            +++ GL   G L  A ++  +M + G   +  T+N +     ++ E    ++++  +  
Sbjct: 478 TIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLS 537

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            G   DVST  +L+  +S  G+     ++L   V+
Sbjct: 538 RGFSIDVSTTTLLVEMLSDDGLDQSVKQILCEFVQ 572



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 71/146 (48%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++++  NL       S++++   + G ++ A ++F+K ++      V  Y  ++  LC+
Sbjct: 427 LKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQ 486

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             L   A  L   M   G  P+  TY ++   +  + +   A +  QEM  +GF+  V  
Sbjct: 487 QGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVST 546

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIK 150
             LLV+ L + G  +S KQ++ + ++
Sbjct: 547 TTLLVEMLSDDGLDQSVKQILCEFVQ 572


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 130/260 (50%), Gaps = 4/260 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           + LYN LL +  +         L + M+  G  P+  T+ +L+   C SG + +A+E   
Sbjct: 21  IYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFD 80

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M +KG  P      +LV+G   AG+     +++ +M + GF  +   +N+LI + CK G
Sbjct: 81  KMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEG 140

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--HKPFPSL 229
           + +   ++   + K GL  DV T+   I A+  +G + EA R+  ++  D     P P++
Sbjct: 141 KTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNI 200

Query: 230 --YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  ++ G  + G  ++A   F +MK+  +  NR  Y + +    R G+ +EA   L E
Sbjct: 201 ITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKE 260

Query: 288 MTEMGLTPISRCFDLVTDGL 307
           M +MG+ P    +++V DGL
Sbjct: 261 MVDMGMEPNVYSYNIVMDGL 280



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 144/333 (43%), Gaps = 60/333 (18%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN ++  LC+  +   A  L+R M   G +PD  TY  L++ +C +GK+ EA   L+
Sbjct: 270 VYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLR 329

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G +P     ++L+  L   G +  A++++ KM ++G+V+D  T N +I+ +C +G
Sbjct: 330 EMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNG 389

Query: 172 EVEFCVEMY-------------------------------------YSVCKLGLCA---- 190
           +++  +E+                                      YS    GLC     
Sbjct: 390 KLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRV 449

Query: 191 -----------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                            D + Y + I +  K G I  AFR+L ++ + G       Y  +
Sbjct: 450 GEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSL 509

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G+  + Q  + +    EM+ +G  P+  +Y  +++    GGR  +A + L EM + G+
Sbjct: 510 IMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGI 569

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326
           +P    F ++      C   D +   E+ E++L
Sbjct: 570 SPNISSFSILIKAF--CKACDFSAVDEIFEIAL 600



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 146/346 (42%), Gaps = 41/346 (11%)

Query: 15  VSPQT--LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP+T   +++I      G +D+A E+F+K     C+     +  L+   C         
Sbjct: 52  VSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGL 111

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV---------- 122
            L+  M R GF P+K  Y  L++++C  GK  +A++ + EM   G +P V          
Sbjct: 112 ELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISAL 171

Query: 123 --RGR---------------------------DLLVQGLLNAGYLESAKQMVNKMIKQGF 153
              G+                           +L++ G    G LE A+ +  KM     
Sbjct: 172 CSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSEN 231

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           +++ E++N  +  + + G++     +   +  +G+  +V +Y I++  + K G++ +A  
Sbjct: 232 LMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARM 291

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L+  +   G  P    Y  ++ G    G+  +A     EM   G  PN     +L+    
Sbjct: 292 LMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLW 351

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + GR  EA   L +M E G    +   ++V DGL N GK D A +I
Sbjct: 352 KEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEI 397



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 131/327 (40%), Gaps = 27/327 (8%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC----QQCVLLYNSL 58
           K ++ M+   LS    T +  I      G V  A  +F            Q  ++ YN +
Sbjct: 147 KLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLM 206

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           L   C+  +   A AL  +M     + ++ +Y I +      GK+ EAQ  L+EM D G 
Sbjct: 207 LGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGM 266

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P V   ++++ GL   G L  A+ ++  M   G + D  T+ +L+   C +G+V     
Sbjct: 267 EPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANN 326

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   + + G   +  T  IL+ ++ K G I EA  LL  + E G+         +I G+ 
Sbjct: 327 VLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLC 386

Query: 239 RRGQFDDAFCFFSEMKIKGHP-----------------------PNRPVYTMLITMCGRG 275
             G+ D A    + M   G                         P+   Y+ +I+   + 
Sbjct: 387 NNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKA 446

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDL 302
           GR  EA    +EM    L P S  +D+
Sbjct: 447 GRVGEAKKKFIEMMGKNLQPDSAIYDV 473



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 8/247 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IE+M   NL        + I  F K G + +A  V        C + +  YNSL+  L
Sbjct: 455 KFIEMMGK-NLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGL 513

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                    Y LI  M  +G  PD   Y  ++++ C  G++++A   L EM  KG +P +
Sbjct: 514 GSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNI 573

Query: 123 RGRDLLVQGLLNAGYLESAKQMVN---KMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
               +L++    A    +  ++      +      L   TFN L+      GEV    E+
Sbjct: 574 SSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELL----VGGEVVKAKEL 629

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           + +            YK LI  + K   +D+A  +LH L++ G+   P+ + P+I G+ +
Sbjct: 630 FETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGK 689

Query: 240 RGQFDDA 246
           RG   +A
Sbjct: 690 RGNKHEA 696



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 149/345 (43%), Gaps = 34/345 (9%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN----------------- 47
           ++ M      +   T +++I+    +G +D A+E+ N                       
Sbjct: 363 LQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDD 422

Query: 48  ------CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101
                 C   ++ Y++++  LC+      A      M+ K   PD   Y + ++++C  G
Sbjct: 423 SDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEG 482

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+  A   L++M  KG N  ++  + L+ GL +   +     ++++M ++G   D+  +N
Sbjct: 483 KISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYN 542

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA---GMIDEAFRLLHNL 218
           +++ ++C+ G V+    +   + + G+  ++S++ ILI A  KA     +DE F +  N+
Sbjct: 543 NVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNV 602

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
              GHK   +LY+     +   G+   A   F     +       +Y  LI    +  + 
Sbjct: 603 C--GHK--EALYSLTFNELLVGGEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKL 658

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGL-KNCGKH---DLAEKI 319
            +A+  L ++ + G       F  V DGL K   KH   +LAEK+
Sbjct: 659 DDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKM 703



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 113/274 (41%), Gaps = 23/274 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  +   G V  A  V  +     C       N LL++L +      A  L+++M
Sbjct: 307 TYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKM 366

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-----------------------SD 115
             KG+V D  T  I+++  C++GK+ +A E +  M                       S 
Sbjct: 367 NEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSR 426

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           K   P +     ++ GL  AG +  AK+   +M+ +    D   ++  I + CK G++  
Sbjct: 427 KKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISS 486

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              +   + K G    + TY  LI  +     I E + L+  + E G  P  S+Y  ++ 
Sbjct: 487 AFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLS 546

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            +   G+  DA     EM  KG  PN   +++LI
Sbjct: 547 SLCEGGRVKDAPSVLDEMLQKGISPNISSFSILI 580



 Score = 61.2 bits (147), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%)

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N L+ +  K G V+    +   +   G+  +  T+ +LI  +  +G +D+A  L   + 
Sbjct: 24  YNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMP 83

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           E G +P    +  +++G  R G          EM+  G  PN+ VY  LI+   + G+  
Sbjct: 84  EKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTD 143

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +A   + EM + GL+P    F+     L + GK   A +I
Sbjct: 144 DAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRI 183


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 142/312 (45%), Gaps = 3/312 (0%)

Query: 10  PYNLSVSPQTLSLIIEEFGKHGL--VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           P  L ++P  +S  I   G  G+  +D A++V ++   +     V+ Y ++L A C  + 
Sbjct: 196 PTKLYITPDLVSCNILLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKED 255

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
             GA  L   +I  G VPD   Y +L++ +C +GK+++A   + EM   G  P      +
Sbjct: 256 LKGAQKLFDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSV 315

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++     G    A  ++ +M+  G   D      +++ +C+ G+ E   +M+  + K  
Sbjct: 316 VIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKN 375

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D +    LI  + K+GM+ EA +L   L E G+KP    Y  +I G+   G+  +A 
Sbjct: 376 VPPDNTITNTLIYWLCKSGMVREARKLFDEL-EKGYKPSLLTYNSLISGLCENGELQEAG 434

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             + +M  + + PN   Y  LI    + G+  E A    EM   G  P    + ++ D L
Sbjct: 435 KVWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSL 494

Query: 308 KNCGKHDLAEKI 319
                 D+ + I
Sbjct: 495 SEPIHDDIVDNI 506


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 148/318 (46%), Gaps = 3/318 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++   Y  S   + LS ++       L+D +  + +K + F C+     YN L+ +L   
Sbjct: 169 QMTTHYGYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGR 228

Query: 66  KLFHGAYALIRRMIR-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              H   AL  R I+ + + PD  ++ +++   C  G++++A E ++ M++ G +P    
Sbjct: 229 GRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVT 288

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSV 183
            ++LV GL     +    +++ ++ + G  + ++ TF S+I   CK+G++E  + +Y  +
Sbjct: 289 HNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDM 348

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G+  +  TY +LI    K G +  A  +   +      P    ++ +I G  R GQ 
Sbjct: 349 VASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQL 408

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDL 302
           DDA   +S+M      PN   ++++I    +  R  EA   L E+     + P +  ++ 
Sbjct: 409 DDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNP 468

Query: 303 VTDGLKNCGKHDLAEKIE 320
           V D L  CGK D A  I 
Sbjct: 469 VIDVLCKCGKVDEANLIR 486



 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 140/281 (49%), Gaps = 2/281 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   + G V  A+E+  +   F C    + +N L+  LC        + ++RR+
Sbjct: 253 SFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRL 312

Query: 79  IRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            R G  +P+  T+  +++ +C +GK+ +A     +M   G  P     ++L+ G    G 
Sbjct: 313 QRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 372

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L SA ++  +M +     D+ TF+SLI+  C+ G+++  + ++  + +  +  +V T+ I
Sbjct: 373 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 432

Query: 198 LIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           +I ++ K    DEA  LL+ L +     P   +Y P+I  + + G+ D+A      M+ K
Sbjct: 433 IIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 492

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           G  P++  YT+LI       R  EA  +  EM E G +P S
Sbjct: 493 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDS 533



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 122/279 (43%), Gaps = 10/279 (3%)

Query: 44  TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGK 102
           +A +CQQ       ++  LC       A  L  +M    G+ PD R  + LV++   +  
Sbjct: 143 SAHSCQQ-------IIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANL 195

Query: 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGFVLDLETFN 161
           +  +   L + S+ G        + L+  L+  G +     +  + I+ + +  D+ +FN
Sbjct: 196 LDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFN 255

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I+ +C+ G+V+  +E+   + + G   D  T+ IL+  + +   +     +L  L  D
Sbjct: 256 VVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRD 315

Query: 222 GH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           G   P    +  +I G  + G+ +DA   +++M   G  PN   Y +LI   G+ G    
Sbjct: 316 GVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGS 375

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           A     +MT +   P    F  + DG   CG+ D A +I
Sbjct: 376 AVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 414



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 1/130 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVK 66
           M  + +  +  T S+II    K    D A+ + N+     +      +YN ++  LC+  
Sbjct: 418 MAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCG 477

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
               A  + + M  KG  PDK TY IL+  +C   ++ EA  F  EM + G +P     +
Sbjct: 478 KVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVN 537

Query: 127 LLVQGLLNAG 136
             +  LL AG
Sbjct: 538 CFISCLLKAG 547



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 1/154 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ + + G +D+A+ +++       Q  V  ++ ++ +LC+      A  L+  +
Sbjct: 394 TFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNEL 453

Query: 79  -IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            +R    P    Y  +++  C  GK+ EA    + M +KG  P      +L+ G      
Sbjct: 454 NLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSR 513

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +  A    ++M++ G   D  T N  I  + K+G
Sbjct: 514 ISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAG 547


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 130/280 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            P    ++++ + + G V   +  F +         V+  N LL  L ++      + + 
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M R G  P+  T+ IL +  C  G   +  +FL++M ++GF+P +   + L+      
Sbjct: 247 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 306

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A  +   M ++G V DL ++ +L+  +CK G V    ++++ +   GL  D+ TY
Sbjct: 307 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 366

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G + E+  LLH+++ +G  P       +++G  + G+F  A     E++ 
Sbjct: 367 NTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQR 426

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            G   ++ +Y+ LI    R  R   A N L  M++ G  P
Sbjct: 427 FGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKP 466



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 128/294 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E M+ + ++ +  T +++     K G      +   K         ++ YN+L+ +
Sbjct: 243 WEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINS 302

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A+ L + M R+G VPD  +Y  L+N  C  G++REA +    M  +G +P 
Sbjct: 303 YCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 362

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L+ G    G ++ ++ +++ MI  G   D  T   L+E   K G+    + +  
Sbjct: 363 IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVV 422

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+      Y  LI A+ +      A  LL  + +DGHKP   +Y  +IK   +  
Sbjct: 423 ELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCD 482

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +A     EM  K   PN   Y  +I    R  R +E  + + EM   G+ P
Sbjct: 483 CIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLP 536



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 23/252 (9%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEM---------------------SDKGFNP 120
           G  P  + Y I+V+    S    +A +FL E+                      D  ++P
Sbjct: 129 GLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELVKDDLPSEDVFKNLILCTEDCNWDP 188

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   D+LV+  L  G +    +   +M++ GFV  + T N L+  + K    + C E+Y
Sbjct: 189 VV--FDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 246

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+  ++ T+ IL   + K G   +  + L  + E+G  P    Y  +I    R+
Sbjct: 247 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 306

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ DDAF  +  M  +G  P+   YT L+    + GR  EA      M   GL+P    +
Sbjct: 307 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 366

Query: 301 DLVTDGLKNCGK 312
           + +  G    GK
Sbjct: 367 NTLIHGYCKEGK 378



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 37/211 (17%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP + +  +++E +GK G   +A+ +  +   F       +Y+ L+ ALC       A 
Sbjct: 394 ISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAK 453

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ RM + G  P+   Y  L+ ++C    + EA     EM DK   P +     ++  L
Sbjct: 454 NLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCL 513

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLE---------------------------------- 158
                    + +V +M+  G + DLE                                  
Sbjct: 514 SRLSRSMEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDT 573

Query: 159 -TFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
            +FN+LI      G++   +E+   + K+GL
Sbjct: 574 ESFNALIRITSAKGDIARSLEIQDMMLKMGL 604


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 141/289 (48%), Gaps = 1/289 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + +I+ +G+  L D   ++  +      +  V+ Y  L+  LC+      A  ++  
Sbjct: 463 ETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGD 522

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G VP+ + Y +L++  C +GK+++A  F  EM  +   P +   ++L+ GL   G 
Sbjct: 523 MVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGK 582

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  A+ + +++ ++G   D+ T+NSLI     +G V+  +E+Y ++ K G+   ++TY  
Sbjct: 583 VMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHR 642

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K G++    ++   +++    P   +Y  +I      G    A    S M+ +G
Sbjct: 643 LIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQG 701

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             P++  Y  LI    + GR  +  N + +M   GL P +  +D++  G
Sbjct: 702 IQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVG 750



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 77/362 (21%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + +I+ + K G ++ A  +  +    N +  ++ +NSLL  LC  ++   A 
Sbjct: 248 VAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQ 307

Query: 73  ALIRRMIRKGFVPDKRTY-----------------------------------AILVNAW 97
            ++  M   GFVPD+ TY                                   +IL+NA 
Sbjct: 308 RVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNAL 367

Query: 98  CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-----LNAGY--------------- 137
           C  G M +A+E L++  + G  P     + +V G      +N  Y               
Sbjct: 368 CKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNH 427

Query: 138 ---------------LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                          +E A++ + KM+++G + ++ET+N+LI+   +S   + C ++   
Sbjct: 428 VTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEE 487

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K GL  +V +Y  LI  + K   I EA  +L ++V  G  P   +Y  +I G    G+
Sbjct: 488 MEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGK 547

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DAF FF EM  +   P    Y +LI    + G+ +EA N   E+T  GL+     FD+
Sbjct: 548 LKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKGLS-----FDV 602

Query: 303 VT 304
           +T
Sbjct: 603 IT 604



 Score =  103 bits (258), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 126/278 (45%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G +  A+E+            V +YN ++  LC+ K    A  L   M+ +   P++ 
Sbjct: 194 KLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRI 253

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY  L++ +C  G++ EA    + M  +   P +   + L+ GL  A  +E A++++ +M
Sbjct: 254 TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEM 313

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
              GFV D  T+ +L +   K G V+  + +     + G+     T  IL+ A+ K G +
Sbjct: 314 EVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNM 373

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ++A  +L   +E+G  P    +  I+ G  + G  + A+    +M+  G  PN   Y  L
Sbjct: 374 EKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSL 433

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +          EA   + +M E G+ P    ++ + DG
Sbjct: 434 VKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 144/350 (41%), Gaps = 38/350 (10%)

Query: 1   MWKTIELMKPYNLS-VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           + + IELM       VSP     +++I    K   + +A ++F++          + YN+
Sbjct: 198 LKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNT 257

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+   C+V     A+ +  RM  +   P   T+  L+N  C +  M EAQ  L+EM   G
Sbjct: 258 LIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYG 317

Query: 118 FNPP-------------------------------VRGRDLLVQGLLNA----GYLESAK 142
           F P                                V+  D     LLNA    G +E A+
Sbjct: 318 FVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAE 377

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++ K ++ G       FN+++   C+ G++         +  +GL  +  TY  L+   
Sbjct: 378 EVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   ++EA + +  +VE G  P    Y  +I G  R   FD  F    EM+ KG  PN 
Sbjct: 438 CEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNV 497

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             Y  LI    +    +EA   L +M   G+ P ++ ++++ DG    GK
Sbjct: 498 ISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGK 547



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 123/277 (44%), Gaps = 1/277 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           + Q  +++I+     G + +A   F++  A      ++ YN L+  LC+      A  L 
Sbjct: 531 NAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLA 590

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             + RKG   D  TY  L++ + S+G +++A E  + M   G  P +     L+ G    
Sbjct: 591 SEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKE 650

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L   +++  +M++   V D   +N+LI    + G+V+    ++ ++   G+  D  TY
Sbjct: 651 G-LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTY 709

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G + +   L++++   G  P    Y  +I G  +   FD A+ ++ EM  
Sbjct: 710 NCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFE 769

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            G  P+  +   LIT     GR  +A     EM   G
Sbjct: 770 NGFTPSVSICDNLITGLREEGRSHDADVICSEMNMKG 806



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 107/245 (43%), Gaps = 3/245 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKM-REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            P K  ++ ++ + CS  KM  E+ E    M   G  P V   +L ++ L++    E   
Sbjct: 108 TPMKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTL 167

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           Q+ +++++ G   D   +   I+   K G+++  +E+   + + G+   V  Y ++I  +
Sbjct: 168 QLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGL 227

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K   + +A +L   +++    P    Y  +I G  + GQ ++AF     MK++   P  
Sbjct: 228 CKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             +  L+    R     EA   L EM   G  P    +  + DG   CG  D +  I L 
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDAS--ITLS 345

Query: 323 EVSLR 327
           E ++R
Sbjct: 346 EEAVR 350



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 94/250 (37%), Gaps = 36/250 (14%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS    T + +I  +   G V  A+E++        +  +  Y+ L+ A C  +      
Sbjct: 598 LSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLI-AGCGKEGLVLVE 656

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + M++   VPD+  Y  L++ +   G +++A      M  +G  P     + L+ G 
Sbjct: 657 KIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH 716

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +   K +VN M  +G +   ET++ LI   CK  +                    
Sbjct: 717 FKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKD-------------------- 756

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
                           D A+     + E+G  P  S+   +I G+   G+  DA    SE
Sbjct: 757 ---------------FDGAYVWYREMFENGFTPSVSICDNLITGLREEGRSHDADVICSE 801

Query: 253 MKIKGHPPNR 262
           M +KG    R
Sbjct: 802 MNMKGKDDCR 811


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 136/291 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I+ F K G +  A +++++    +    +  Y+SL+   C       A  +   M
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I K   P+  TY+ L+  +C + ++ E  E  +EMS +G          L+ G   A   
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDC 449

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A+ +  +M+  G   ++ T+N L++ +CK+G++   + ++  + +  +  D+ TY I+
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIM 509

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +++ + L  NL   G  P    Y  +I G  R+G  ++A     +MK  G 
Sbjct: 510 IEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGP 569

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            PN   Y  LI    R G    +A  + EM   G    +    LVT+ L +
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHD 620



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 131/294 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T   ++    K G +D A+ +  K      +  V++YN+++  LC+ K    A  L   M
Sbjct: 225 TYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEM 284

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  TY+ L++  C+ G+  +A   L +M ++  NP V     L+   +  G L
Sbjct: 285 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKL 344

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ ++MIK+    D+ T++SLI   C    ++    M+  +       +V TY  L
Sbjct: 345 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  ++E   L   + + G       Y  +I G F+    D+A   F +M   G 
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            PN   Y +L+    + G+  +A      +    + P    ++++ +G+   GK
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 518



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 133/287 (46%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD+AV++F           ++ +N LL A+ ++  F    +L  +M   G   D  TY+I
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            +N +C   ++  A   L +M   G+ P +     L+ G  ++  +  A  +V++M++ G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           +  D  TF +LI  +    +    V +   + + G   D+ TY  ++  + K G ID A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + +   +    +Y  II G+ +    DDA   F+EM  KG  P+   Y+ LI+  
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              GR+ +A+  L +M E  + P    F  + D     GK   AEK+
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 350



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 152/334 (45%), Gaps = 36/334 (10%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K+  +D+A+ +F +      +  V  Y+SL+  LC    +  A  L+  MI + 
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK 323

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  T++ L++A+   GK+ EA++   EM  +  +P +     L+ G      L+ AK
Sbjct: 324 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 383

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            M   MI +    ++ T+++LI+  CK+  VE  +E++  + + GL  +  TY  LI   
Sbjct: 384 HMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443

Query: 203 SKAGMIDEA---FR-----------LLHNLVEDG---------------------HKPFP 227
            +A   D A   F+           L +N++ DG                      +P  
Sbjct: 444 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 503

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
             Y  +I+GM + G+ +D +  F  + +KG  PN   Y  +I+   R G   EA + L +
Sbjct: 504 YTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKK 563

Query: 288 MTEMGLTPISRCFD-LVTDGLKNCGKHDLAEKIE 320
           M E G  P S  ++ L+   L++  +   AE I+
Sbjct: 564 MKEDGPLPNSGTYNTLIRARLRDGDREASAELIK 597



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 116/241 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+  +   C       A A++ +M++ G+ PD  T + L+N +C S ++ +A   + +M 
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           + G+ P       L+ GL        A  +V++M+++G   DL T+ +++  +CK G+++
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDID 240

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + +   + K  + ADV  Y  +I  + K   +D+A  L   +   G +P    Y+ +I
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             +   G++ DA    S+M  +   PN   ++ LI    + G+ VEA     EM +  + 
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360

Query: 295 P 295
           P
Sbjct: 361 P 361



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 6/279 (2%)

Query: 3   KTIELMKPYN----LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K +E  K Y+     S+ P   T S +I  F  H  +D A  +F    + +C   V+ Y+
Sbjct: 343 KLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYS 402

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           +L+   C+ K       L R M ++G V +  TY  L++ +  +     AQ   ++M   
Sbjct: 403 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 462

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G +P +   ++L+ GL   G L  A  +   + +     D+ T+N +IE +CK+G+VE  
Sbjct: 463 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDG 522

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            E++ ++   G+  +V  Y  +I    + G  +EA  LL  + EDG  P    Y  +I+ 
Sbjct: 523 WELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRA 582

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             R G  + +     EM+  G   +     ++  M   G
Sbjct: 583 RLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDG 621



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 136/311 (43%), Gaps = 2/311 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     H     AV + ++     CQ  ++ Y +++  LC+      A +L+++M
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +     D   Y  +++  C    M +A     EM +KG  P V     L+  L N G  
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 309

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++++ MI++    ++ TF++LI+   K G++    ++Y  + K  +  D+ TY  L
Sbjct: 310 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I        +DEA  +   ++     P    Y+ +IKG  +  + ++    F EM  +G 
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGL 429

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             N   YT LI    +      A     +M  +G+ P    ++++ DGL  C    LA+ 
Sbjct: 430 VGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGL--CKNGKLAKA 487

Query: 319 IELLEVSLRSV 329
           + + E   RS 
Sbjct: 488 MVVFEYLQRST 498



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 140/325 (43%), Gaps = 3/325 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M+   +S    T S+ I  F +   +  A+ V  K      +  ++  +SLL   C  
Sbjct: 107 EQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHS 166

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K    A AL+ +M+  G+ PD  T+  L++      K  EA   + +M  +G  P +   
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             +V GL   G ++ A  ++ KM K     D+  +N++I+ +CK   ++  + ++  +  
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV TY  LI  +   G   +A RLL +++E    P    ++ +I    + G+  +
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   + EM  +   P+   Y+ LI       R  EA +    M      P    +  +  
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406

Query: 306 GLKNCGKHDLAEKIELL-EVSLRSV 329
           G   C    + E +EL  E+S R +
Sbjct: 407 GF--CKAKRVEEGMELFREMSQRGL 429



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 1/194 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F +    DNA  VF +  +      +L YN LL  LC+      A  +   +
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R    PD  TY I++   C +GK+ +  E    +S KG +P V   + ++ G    G  
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSK 554

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  ++ KM + G + +  T+N+LI    + G+ E   E+   +   G   D ST   L
Sbjct: 555 EEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-L 613

Query: 199 IPAVSKAGMIDEAF 212
           +  +   G +D++F
Sbjct: 614 VTNMLHDGRLDKSF 627



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 81/192 (42%)

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
           R++L   L +   ++ A  +   M+K      +  FN L+  + K  + E  + +   + 
Sbjct: 51  REILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQ 110

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+  D+ TY I I    +   +  A  +L  +++ G++P     + ++ G     +  
Sbjct: 111 TLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRIS 170

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     +M   G+ P+   +T LI       +  EA   + +M + G  P    +  V 
Sbjct: 171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVV 230

Query: 305 DGLKNCGKHDLA 316
           +GL   G  DLA
Sbjct: 231 NGLCKRGDIDLA 242



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 93/218 (42%), Gaps = 4/218 (1%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           IL N      K+ +A +   +M      P +   + L+  +      E    +  +M   
Sbjct: 53  ILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL 112

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G   DL T++  I   C+  ++   + +   + KLG   D+ T   L+     +  I +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY-TMLIT 270
             L+  +VE G+KP    +  +I G+F   +  +A     +M  +G  P+   Y T++  
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 271 MCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLVTDGL 307
           +C RG   ++ A  L++  E G +      ++ + DGL
Sbjct: 233 LCKRGD--IDLALSLLKKMEKGKIEADVVIYNTIIDGL 268


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +L  LC       A      M+R G  P+  T++ L+N +C   ++ EA      M +
Sbjct: 244 NKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIE 303

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P +    +L+ GL  AG LE    + +  + +G  +D+  F+S+++   + G++  
Sbjct: 304 KGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGK 363

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            +E+Y  + K G+  +V TY ILI  + + G + EA  +   +++ G +P    Y+ +I 
Sbjct: 364 AIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  +     D F  +  M  KGH P+  V +MLI    R G   EA  +  +  + GLT 
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 296 ISRCFDLVTDG 306
            +  F+ + DG
Sbjct: 484 NNYLFNALIDG 494



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 8/308 (2%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S I++ + + G +  A+EV+ +         V+ Y+ L+  LC       A  +  +++
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++G  P   TY+ L++ +C S  +R+       M  KG  P V    +L+ GL   G ++
Sbjct: 408 KQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMD 467

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +   + +K+G  L+   FN+LI+   +       ++MY  +    +  DV TY +L+
Sbjct: 468 EALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLV 527

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +++ G +DEA  L   L++ G  P   +Y  +I G  ++         F  M+  G  
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIF 587

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL---A 316
           P+  +Y +LI M  R G        L E+ + GL P     D+VT     CG   L   +
Sbjct: 588 PDICIYNVLINMFFREGCVENVLELLREIIKYGLEP-----DIVTYNTMICGYCSLKIFS 642

Query: 317 EKIELLEV 324
           + I+L EV
Sbjct: 643 KAIKLFEV 650



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +++L+   C+      A++L   MI KG VPD   Y+IL+N    +GK+ E         
Sbjct: 278 FSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMAL 337

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G    V     ++   +  G L  A ++  +M+K+G   ++ T++ LI  +C++G V 
Sbjct: 338 ARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVL 397

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  + K GL   V TY  LI    K+  + + F L   ++  GH P   + + +I
Sbjct: 398 EACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLI 457

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ R+G  D+A  FF +   +G   N  ++  LI  C R  R  +     + M    + 
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVI 517

Query: 295 PISRCFDLVTDGLKNCGKHDLA 316
           P    + ++  GL   G+ D A
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEA 539



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S++I    ++G V  A  VF +      +  VL Y+SL+   C+ +     +
Sbjct: 376 ISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG- 124
            L   M+RKG VPD    ++L+N     G M EA  F  +   +G       FN  + G 
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGC 495

Query: 125 ------RD---------------------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                 RD                     +LV+GL   G L+ A  +  +++K+GF  D 
Sbjct: 496 FRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDH 555

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             + +LI+  CK  +    ++++  +   G+  D+  Y +LI    + G ++    LL  
Sbjct: 556 IIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLRE 615

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +++ G +P    Y  +I G      F  A   F  +K     PN   +T+LI    + GR
Sbjct: 616 IIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGR 675

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             +A      M E G  P    +  + DG
Sbjct: 676 MDDAMLIFSSMLERGPEPNILTYSCLIDG 704



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 8/317 (2%)

Query: 12  NLSVSPQTL-SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           N   +P T+ S ++  + ++G+VD AV+ F   +           + +L  L +      
Sbjct: 134 NYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDV 193

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
                  M  KG       Y  + N++   G++ +   F + + ++G  P +   + +++
Sbjct: 194 ILENYEEMC-KGL----GVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILK 248

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL     +  A    + M++ G   +L TF++LI   CK   ++    +Y  + + G+  
Sbjct: 249 GLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP 308

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+  Y ILI  + +AG ++E   L    +  G K    +++ I+    R G    A   +
Sbjct: 309 DLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVY 368

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           + M  +G  PN   Y++LI    R GR +EA     ++ + GL P    +  + DG   C
Sbjct: 369 TRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF--C 426

Query: 311 GKHDLAEKIELLEVSLR 327
              +L +   L  + LR
Sbjct: 427 KSENLRDGFGLYGIMLR 443



 Score = 73.9 bits (180), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 119/302 (39%), Gaps = 39/302 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+  L E      A AL  ++++KGF PD   Y  L++ +C         +  +
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS--------- 162
            M   G  P +   ++L+      G +E+  +++ ++IK G   D+ T+N+         
Sbjct: 580 LMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLK 639

Query: 163 --------------------------LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
                                     LI+  CK G ++  + ++ S+ + G   ++ TY 
Sbjct: 640 IFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI    K    + AF L   ++ D   P    Y+ +I G+ ++G  ++A   F     +
Sbjct: 700 CLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGR 759

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              P+   Y +LI    + GR  EA      M   G+ P     DL+   L   G  D  
Sbjct: 760 HLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD----DLLQKALAEYGFQDSQ 815

Query: 317 EK 318
            K
Sbjct: 816 AK 817



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 39/225 (17%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F + G V+N +E+  +   +  +  ++ YN+++   C +K+F  A  L   +  
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG----------------------- 117
               P+  T+ IL++A+C  G+M +A      M ++G                       
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 118 ------------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
                        +P +    +L+ GL   G +E A       I +  + D+  +  LI 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
             CK G +   + +Y  +   G+  D     +L  A+++ G  D 
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPD----DLLQKALAEYGFQDS 814


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 121/251 (48%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +L  LC       A      M+R G  P+  T++ L+N +C   ++ EA      M +
Sbjct: 244 NKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIE 303

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
           KG  P +    +L+ GL  AG LE    + +  + +G  +D+  F+S+++   + G++  
Sbjct: 304 KGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGK 363

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            +E+Y  + K G+  +V TY ILI  + + G + EA  +   +++ G +P    Y+ +I 
Sbjct: 364 AIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLID 423

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G  +     D F  +  M  KGH P+  V +MLI    R G   EA  +  +  + GLT 
Sbjct: 424 GFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTL 483

Query: 296 ISRCFDLVTDG 306
            +  F+ + DG
Sbjct: 484 NNYLFNALIDG 494



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 8/308 (2%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S I++ + + G +  A+EV+ +         V+ Y+ L+  LC       A  +  +++
Sbjct: 348 FSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQIL 407

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++G  P   TY+ L++ +C S  +R+       M  KG  P V    +L+ GL   G ++
Sbjct: 408 KQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMD 467

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A +   + +K+G  L+   FN+LI+   +       ++MY  +    +  DV TY +L+
Sbjct: 468 EALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLV 527

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +++ G +DEA  L   L++ G  P   +Y  +I G  ++         F  M+  G  
Sbjct: 528 KGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIF 587

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL---A 316
           P+  +Y +LI M  R G        L E+ + GL P     D+VT     CG   L   +
Sbjct: 588 PDICIYNVLINMFFREGCVENVLELLREIIKYGLEP-----DIVTYNTMICGYCSLKIFS 642

Query: 317 EKIELLEV 324
           + I+L EV
Sbjct: 643 KAIKLFEV 650



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 122/265 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ +++L+   C+      A++L   MI KG VPD   Y+IL+N    +GK+ E      
Sbjct: 275 LVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFS 334

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
               +G    V     ++   +  G L  A ++  +M+K+G   ++ T++ LI  +C++G
Sbjct: 335 MALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNG 394

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V     ++  + K GL   V TY  LI    K+  + + F L   ++  GH P   + +
Sbjct: 395 RVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCS 454

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ R+G  D+A  FF +   +G   N  ++  LI  C R  R  +     + M   
Sbjct: 455 MLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMY 514

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
            + P    + ++  GL   G+ D A
Sbjct: 515 KVIPDVVTYTVLVKGLAEQGRLDEA 539



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 37/329 (11%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T S++I    ++G V  A  VF +      +  VL Y+SL+   C+ +     +
Sbjct: 376 ISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGF 435

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRG- 124
            L   M+RKG VPD    ++L+N     G M EA  F  +   +G       FN  + G 
Sbjct: 436 GLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGC 495

Query: 125 ------RD---------------------LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                 RD                     +LV+GL   G L+ A  +  +++K+GF  D 
Sbjct: 496 FRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDH 555

Query: 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217
             + +LI+  CK  +    ++++  +   G+  D+  Y +LI    + G ++    LL  
Sbjct: 556 IIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLRE 615

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           +++ G +P    Y  +I G      F  A   F  +K     PN   +T+LI    + GR
Sbjct: 616 IIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGR 675

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             +A      M E G  P    +  + DG
Sbjct: 676 MDDAMLIFSSMLERGPEPNILTYSCLIDG 704



 Score = 87.4 bits (215), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 137/317 (43%), Gaps = 8/317 (2%)

Query: 12  NLSVSPQTL-SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           N   +P T+ S ++  + ++G+VD AV+ F   +           + +L  L +      
Sbjct: 134 NYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDV 193

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
                  M  KG       Y  + N++   G++ +   F + + ++G  P +   + +++
Sbjct: 194 ILENYEEMC-KGL----GVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILK 248

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL     +  A    + M++ G   +L TF++LI   CK   ++    +Y  + + G+  
Sbjct: 249 GLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP 308

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+  Y ILI  + +AG ++E   L    +  G K    +++ I+    R G    A   +
Sbjct: 309 DLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVY 368

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
           + M  +G  PN   Y++LI    R GR +EA     ++ + GL P    +  + DG   C
Sbjct: 369 TRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGF--C 426

Query: 311 GKHDLAEKIELLEVSLR 327
              +L +   L  + LR
Sbjct: 427 KSENLRDGFGLYGIMLR 443



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 104/222 (46%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  F + G V+N +E+  +   +  +  ++ YN+++   C +K+F  A  L   +  
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+  T+ IL++A+C  G+M +A      M ++G  P +     L+ G       ES
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++  KM+      ++ +++ LI+ +CK G +E     +       L  DV  Y ILI 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
              K G + EA  L  +++ +G  P   L   + +  F+  Q
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYGFQDSQ 815



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 119/303 (39%), Gaps = 39/303 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  L+  L E      A AL  ++++KGF PD   Y  L++ +C         +  +
Sbjct: 520 VVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFK 579

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS--------- 162
            M   G  P +   ++L+      G +E+  +++ ++IK G   D+ T+N+         
Sbjct: 580 LMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLK 639

Query: 163 --------------------------LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
                                     LI+  CK G ++  + ++ S+ + G   ++ TY 
Sbjct: 640 IFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
            LI    K    + AF L   ++ D   P    Y+ +I G+ ++G  ++A   F     +
Sbjct: 700 CLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGR 759

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              P+   Y +LI    + GR  EA      M   G+ P     DL+   L   G  D  
Sbjct: 760 HLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPD----DLLQKALAEYGFQDSQ 815

Query: 317 EKI 319
             I
Sbjct: 816 ASI 818


>gi|361067085|gb|AEW07854.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
 gi|383151573|gb|AFG57829.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
 gi|383151575|gb|AFG57830.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
 gi|383151577|gb|AFG57831.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
 gi|383151579|gb|AFG57832.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
 gi|383151581|gb|AFG57833.1| Pinus taeda anonymous locus 0_13202_01 genomic sequence
          Length = 91

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           +RGQF +A+  F++MK KGH PNRPVYTMLI +  RGGRF+EAA +L EMTE+ L P  +
Sbjct: 1   KRGQFGEAYSLFNDMKDKGHSPNRPVYTMLIRLSCRGGRFLEAATFLAEMTELNLVPRVQ 60

Query: 299 CFDLVTDGLKNCGKHDLAEKIELLEVS 325
            FD+V  GLKN GK+ LAEKIE L++S
Sbjct: 61  NFDMVIGGLKNVGKYSLAEKIERLQLS 87



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  AY+L   M  KG  P++  Y +L+   C  G+  EA  FL EM++    P V+  D+
Sbjct: 5   FGEAYSLFNDMKDKGHSPNRPVYTMLIRLSCRGGRFLEAATFLAEMTELNLVPRVQNFDM 64

Query: 128 LVQGLLNAGYLESAKQM 144
           ++ GL N G    A+++
Sbjct: 65  VIGGLKNVGKYSLAEKI 81


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 4/310 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +++I+     GL+D A  +F++  A  C+  V  Y  L+  LC       A  + 
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R+M++ G  P   TY  L+N +C  G++  A E L  M  +   P VR  + L++GL   
Sbjct: 360 RKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRV 419

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G    A  ++ +M+  G   D+ ++N LI+ +C+ G +    ++  S+    L  D  T+
Sbjct: 420 GKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTF 479

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I A  K G  D A   L  ++  G          +I G+   G+  DA  F  E  +
Sbjct: 480 TAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDAL-FILETLV 538

Query: 256 KGHPPNRP-VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           K      P    +++ M  +G +  E    L ++ ++GL P    +  + DGL   G  D
Sbjct: 539 KMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSG--D 596

Query: 315 LAEKIELLEV 324
           ++    +LE+
Sbjct: 597 ISGSFRMLEL 606



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 132/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V  A E+        C+  V  +N L+  LC V   + A  L++RM
Sbjct: 373 TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  +Y +L++  C  G M  A + L  M+     P       ++      G  
Sbjct: 433 LDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKA 492

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  M+++G  LD  T  +LI+ +C  G+    + +  ++ K+ +     +  ++
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVI 552

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +SK   + E   +L  + + G  P    Y  ++ G+ R G    +F     MK+ G 
Sbjct: 553 LDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGC 612

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   YT++I    + GR  EA   L  M + G++P    + ++  G  N GK D A
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRA 670



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 129/279 (46%), Gaps = 1/279 (0%)

Query: 35  NAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           +A++VF+  +    C    + Y+ L+  LCEV     A+ L  +M  KG  P  RTY +L
Sbjct: 248 DALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           + A C  G + +A     EM  +G  P V    +L+ GL   G +E A  +  KM+K G 
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGI 367

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              + T+N+LI   CK G V    E+   + K     +V T+  L+  + + G   +A  
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  ++++G  P    Y  +I G+ R G  + A+   + M      P+   +T +I    
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFC 487

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + G+   A+ +L  M   G++        + DG+ N GK
Sbjct: 488 KQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGK 526



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 138/298 (46%), Gaps = 2/298 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S++I    + G ++ A  + ++     CQ     Y  L+ ALC+  L   A+ L   MI 
Sbjct: 270 SILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIA 329

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  P+  TY +L++  C  GK+ EA    ++M   G  P V   + L+ G    G +  
Sbjct: 330 RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVP 389

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A +++  M K+    ++ TFN L+E +C+ G+    V +   +   GL  D+ +Y +LI 
Sbjct: 390 AFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLID 449

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + + G ++ A++LL ++     +P    +  II    ++G+ D A  F   M  KG   
Sbjct: 450 GLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISL 509

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNCG-KHDLA 316
           +    T LI      G+  +A   L  + +M +       +++ D L K C  K +LA
Sbjct: 510 DEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELA 567



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 120/271 (44%), Gaps = 38/271 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+SLL +L ++ L   AY   RRM   GFV     Y  +VNA C +G             
Sbjct: 163 YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNG------------- 209

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                                 Y E+A+  + K++K GF+LD     SL+   C+   + 
Sbjct: 210 ----------------------YTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLR 247

Query: 175 FCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
             ++++  + + G CA  S +Y ILI  + + G ++EAF L   + E G +P    Y  +
Sbjct: 248 DALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           IK +  RG  D AF  F EM  +G  PN   YT+LI    R G+  EA     +M + G+
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGI 367

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            P    ++ + +G   C    +    ELL V
Sbjct: 368 FPSVITYNALINGY--CKDGRVVPAFELLTV 396



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 118/264 (44%), Gaps = 1/264 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           +  SLL   C       A  +   M R+G   P+  +Y+IL++  C  G++ EA     +
Sbjct: 232 IVTSLLLGFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQ 291

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M +KG  P  R   +L++ L + G ++ A  + ++MI +G   ++ T+  LI+ +C+ G+
Sbjct: 292 MGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGK 351

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           +E    +   + K G+   V TY  LI    K G +  AF LL  + +   KP    +  
Sbjct: 352 IEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNE 411

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +++G+ R G+   A      M   G  P+   Y +LI    R G    A   L  M    
Sbjct: 412 LMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFD 471

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           L P    F  + +     GK D+A
Sbjct: 472 LEPDCLTFTAIINAFCKQGKADVA 495



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 128/271 (47%), Gaps = 3/271 (1%)

Query: 2   WKTIELMKP-YNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           +K + L+K   +  +SP  +S  ++I+   + G ++ A ++     +F+ +   L + ++
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAI 482

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + A C+      A A +  M+RKG   D+ T   L++  C+ GK R+A   L+ +     
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRM 542

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
                  ++++  L     L+    M+ K+ K G V  + T+ +L++ + +SG++     
Sbjct: 543 LTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFR 602

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           M   +   G   +V  Y I+I  + + G ++EA +LL  + + G  P    Y  ++KG  
Sbjct: 603 MLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             G+ D A      M  +G+  N  +Y+ L+
Sbjct: 663 NNGKLDRALETVRAMVERGYELNDRIYSSLL 693



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 107/229 (46%), Gaps = 17/229 (7%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E +    +  +P +L++I++   K   +   + +  K         V+ Y +L+  L  
Sbjct: 534 LETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIR 593

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                G++ ++  M   G +P+   Y I++N  C  G++ EA++ L  M D G +P    
Sbjct: 594 SGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE--TICKSGEVEF---CVEM 179
             ++V+G +N G L+ A + V  M+++G+ L+   ++SL+    + + G  E    C++ 
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKE 713

Query: 180 YYSVCKL------GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
             SV +       GLC        L+  + K G  DE+  L+  +++ G
Sbjct: 714 LISVVEQLGGSTSGLCI------FLVTRLCKEGRTDESNGLVQTILKSG 756



 Score = 39.3 bits (90), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/122 (20%), Positives = 60/122 (49%), Gaps = 1/122 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      +  L++ +++ G   +K    I++ ++CS  K  +  E +  +   G
Sbjct: 732 LVTRLCKEGRTDESNGLVQTILKSGVFLEK-AIDIIMESYCSKKKHTKCVELITLVLKSG 790

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P  +   L++QGL   G  E A+++V +++    V++       +E + ++G+    +
Sbjct: 791 FVPSFKSFCLVIQGLKKEGDTERARELVMELLTSNGVVEKSGVLPYVECLMETGDCSEVI 850

Query: 178 EM 179
           ++
Sbjct: 851 DL 852


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 136/314 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M    L VS  T + +I  F K  + + A ++  +         V+ YN+++++LC 
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCR 324

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           +     A   +  M+ +  +PD  +Y  L+  +   G   EA     E+  K   P V  
Sbjct: 325 LGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVT 384

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G L+ AK M + MIK G   D+ TF  L+   C+ G +    E++  + 
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEML 444

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  D   Y   I    K G   +AF +   +  +G  P    Y  +I G+ + G FD
Sbjct: 445 SRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFD 504

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           DA     +M+++G  P+   YT +I      G   +A     +M + G+ P    + ++ 
Sbjct: 505 DANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLI 564

Query: 305 DGLKNCGKHDLAEK 318
                 G+ D A+K
Sbjct: 565 HSYAVRGRLDFAKK 578



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 137/293 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +++M+ +    +  + ++++      G  D A E+  + +    +     YN L+   
Sbjct: 228 EVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGF 287

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+ ++F  A  L R M+ +G +P   TY  ++ + C  G++ +A+ +L  M ++   P +
Sbjct: 288 CKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDL 347

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L+ G    G    A  + +++  +  V  + T+N+LI+  C++G ++    M   
Sbjct: 348 VSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDD 407

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + K GLC DV T+ IL+    + G +  A  L   ++  G KP    Y   I G  + G 
Sbjct: 408 MIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGN 467

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              AF    EMK +G PP+   Y +LI    + G F +A   + +M   G+ P
Sbjct: 468 PSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVP 520



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 122/273 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  + + G    A+ +F++  + N    V+ YN+L+   C       A  +   MI+ G
Sbjct: 353 LIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHG 412

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  T+ ILV  +C  G +  A+E   EM  +G  P        + G L  G    A 
Sbjct: 413 LCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAF 472

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            M  +M  +GF  DL T+N LI  +CK G  +   E+   +   G+  D  TY  +I A 
Sbjct: 473 GMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAH 532

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             +G++ +A  +  ++++ G  P    Y  +I     RG+ D A  +F EM+ KG  PN 
Sbjct: 533 LISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNV 592

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             Y  LI    +      A N   EM   G++P
Sbjct: 593 ITYNALIYGLCKENMMDVAYNLFAEMESKGVSP 625



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 139/318 (43%), Gaps = 2/318 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N  VS + L L+I+ F K  +++  + VF K         V   N +L  L +  + +  
Sbjct: 132 NSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEV 191

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             +   MI+    P   T+  ++++ C  G++  A E L  M   G +P     ++LV G
Sbjct: 192 EEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNG 251

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G  + AK+++ +M   G  +   T+N LI   CK    E   ++   +   G    
Sbjct: 252 LSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPT 311

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY  ++ ++ + G + +A R L  +V +   P    Y  +I G  R G F +A   FS
Sbjct: 312 VVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFS 371

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           E++ K   P+   Y  LI    R G    A     +M + GL P    F ++  G    G
Sbjct: 372 ELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMG 431

Query: 312 KHDLAEKI--ELLEVSLR 327
              +A+++  E+L   L+
Sbjct: 432 NLPMAKELFDEMLSRGLK 449



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 98/186 (52%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN L+  LC++  F  A  L+++M  +G VPD  TY  +++A   SG +R+A+E   
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFS 546

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  KG +P V    +L+      G L+ AK+  ++M  +G   ++ T+N+LI  +CK  
Sbjct: 547 DMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKEN 606

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++    ++  +   G+  +  TY ILI   S      +A +L  ++++   KP    ++
Sbjct: 607 MMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHS 666

Query: 232 PIIKGM 237
            ++K +
Sbjct: 667 ALMKHL 672



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 126/285 (44%), Gaps = 3/285 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++  F + G +  A E+F++  +   +   + Y + +    ++     A+ +   M
Sbjct: 419 TFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEM 478

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +GF PD  TY +L+N  C  G   +A E +Q+M  +G  P       ++   L +G L
Sbjct: 479 KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLL 538

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + M+K+G    + T+  LI +    G ++F  + +  +   G+  +V TY  L
Sbjct: 539 RKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNAL 598

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K  M+D A+ L   +   G  P    Y  +I        + DA   + +M  +  
Sbjct: 599 IYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREI 658

Query: 259 PPNRPVYTMLITMCGRGGRFVEA---ANYLVEMTEMGLTPISRCF 300
            P+   ++ L+    +  + +      N  + + E+  T I+  F
Sbjct: 659 KPDSCTHSALMKHLSKDYKLLAVLRLENLPLAIVEINSTWIAEGF 703


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAP 414



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ + ++M  +G   D  T+ +LI+  CK G +E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYAPS 415



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 3/247 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           + D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +    
Sbjct: 63  ISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWG 122

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
              + ++ G+   L  FN L+ +  K GE+     ++ ++ K GL   V ++  L+    
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN  
Sbjct: 183 KLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL- 322
            +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLTD 300

Query: 323 EVSLRSV 329
           E+S++ +
Sbjct: 301 EMSMKGL 307



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E   +    N +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSV 416


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 3/313 (0%)

Query: 14  SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           S  P  +S   +I  F   G VD A  +F +      Q  V+ Y +++  LC+ ++   A
Sbjct: 198 SCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRA 257

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             + ++MI KG  PD  TY  L++ + S GK +E    L+EMS  G  P       L+  
Sbjct: 258 EGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNY 317

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L N G    A+   + MI++G   ++  +  LI      G +    ++   + + GL  D
Sbjct: 318 LCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPD 377

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
              + I+  A +K  MIDEA  + + + + G  P    +  +I  + + G+ DDA   F+
Sbjct: 378 HHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFN 437

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           +M  +G  PN  V+  L+       ++ +A  +  EM   G+ P    F+ +   L   G
Sbjct: 438 QMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKG 497

Query: 312 KHDLAEK-IELLE 323
           +   A++ I+L+E
Sbjct: 498 QVMKAQRLIDLME 510



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 136/304 (44%), Gaps = 6/304 (1%)

Query: 6   ELMKPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
            +++   + V+P   T S++I  F + G +++    F        +   ++ N LL  LC
Sbjct: 81  RMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC 140

Query: 64  EVKLFHGAY-ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD---KGFN 119
           + K    A   LI+RM   G  PD  +Y  L+  +C+  +  EA E L  M+D   +   
Sbjct: 141 DAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP 200

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V     ++ G    G ++ A  +  +M+ +G   ++ T+ ++I+ +CK+  V+    +
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  +   G+  D  TY  LI      G   E  R+L  +   G KP    Y  ++  +  
Sbjct: 261 FQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCN 320

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
            G+  +A  FF  M  KG  PN  +Y +LI      G   E  + L  M E GL+P    
Sbjct: 321 NGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 300 FDLV 303
           F+++
Sbjct: 381 FNII 384



 Score =  104 bits (259), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 127/270 (47%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   + LM    LS      ++I   + K  ++D A+ +FNK         V+ + +L+ 
Sbjct: 362 MHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALID 421

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC++     A     +M+ +G  P+   +  LV   C+  K  +A+EF  EM ++G  P
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRP 481

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   + ++  L   G +  A+++++ M + G   D+ ++ +LI   C  G ++   +  
Sbjct: 482 DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSL 541

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +  +GL  D  TY  L+    +AG ID+A+ +   ++ +G  P    Y+ I+ G+F  
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTT 601

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            +F +A   +  M   G   N  +Y +++ 
Sbjct: 602 RRFSEAKELYLNMITSGKQWNIWIYNIILN 631



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   LS        +I+   K G VD+AV  FN+         + ++NSL++ LC V  
Sbjct: 404 MKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDK 463

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A      M+ +G  PD   +  ++   C+ G++ +AQ  +  M   G  P V     
Sbjct: 464 WEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTT 523

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G ++ A + ++ M+  G   D  T+N+L+   C++G ++    ++  + + G
Sbjct: 524 LIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNG 583

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   V TY  ++  +       EA  L  N++  G +    +Y  I+ G+ +    D+AF
Sbjct: 584 ITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAF 643

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  +  K        + ++I    + GR  +A +    ++  GL P    + L+ + L
Sbjct: 644 KLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENL 703



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 11/320 (3%)

Query: 9   KPYNL-------SVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           K YNL        + P   T + +I+   K  +VD A  VF +      +     YN L+
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLI 280

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
                +  +     ++  M   G  PD  TY  L+N  C++G+ REA+ F   M  KG  
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIK 340

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P V    +L+ G    G L     ++N M++ G   D   FN +     K   ++  + +
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHI 400

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + + GL  DV  +  LI A+ K G +D+A    + ++ +G  P   ++  ++ G+  
Sbjct: 401 FNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCT 460

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             +++ A  F+ EM  +G  P+   + T+L  +C + G+ ++A   +  M  +G  P   
Sbjct: 461 VDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTK-GQVMKAQRLIDLMERVGTRPDVI 519

Query: 299 CFDLVTDGLKNCGKHDLAEK 318
            +  +  G    G+ D A K
Sbjct: 520 SYTTLIGGHCLVGRIDEAAK 539



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 120/272 (44%), Gaps = 3/272 (1%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR---KGFVPDKRTYAILVNAWCSSGKMR 104
           C   V+ YN+LL   C  K    A  L+  M     +   P+  +YA ++N + + G++ 
Sbjct: 161 CTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVD 220

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +A     EM D+G  P V     ++ GL  A  ++ A+ +  +MI +G   D +T+N LI
Sbjct: 221 KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLI 280

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
                 G+ +  V M   +   GL  D  TY  L+  +   G   EA     +++  G K
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIK 340

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P  ++Y  +I G   +G   +     + M   G  P+  ++ ++ T   +     EA + 
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHI 400

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             +M + GL+P    F  + D L   G+ D A
Sbjct: 401 FNKMKQQGLSPDVVNFGALIDALCKLGRVDDA 432



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 122/310 (39%), Gaps = 4/310 (1%)

Query: 2   WKTI----ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK +    E M  + L     T   ++     +G    A   F+       +  V +Y  
Sbjct: 289 WKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGI 348

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+            + L+  M+  G  PD   + I+  A+     + EA     +M  +G
Sbjct: 349 LIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
            +P V     L+  L   G ++ A    N+M+ +G   ++  FNSL+  +C   + E   
Sbjct: 409 LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAK 468

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E Y+ +   G+  DV  +  ++  +   G + +A RL+  +   G +P    Y  +I G 
Sbjct: 469 EFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGH 528

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G+ D+A      M   G  P+   Y  L+    R GR  +A     EM   G+TP  
Sbjct: 529 CLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGV 588

Query: 298 RCFDLVTDGL 307
             +  +  GL
Sbjct: 589 VTYSTILHGL 598



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 107/239 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +L+   C V     A   +  M+  G  PD+ TY  L++ +C +G++ +A    +
Sbjct: 518 VISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P V     ++ GL        AK++   MI  G   ++  +N ++  + K+ 
Sbjct: 578 EMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNN 637

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V+   +++ S+C      +++T+ I+I A+ K+G  ++A  L   +   G  P    Y 
Sbjct: 638 CVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYC 697

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
            I + +   G  ++    FS M+  G  PN  +   L+      G    A  YL ++ E
Sbjct: 698 LIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDE 756



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 109/244 (44%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D A +  +   +   +     YN+LL   C       AY + R M+R G  P   TY
Sbjct: 532 GRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + +++   ++ +  EA+E    M   G    +   ++++ GL     ++ A ++   +  
Sbjct: 592 STILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCS 651

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           + F L++ TFN +I  + KSG  E  + ++ ++   GL  DV TY ++   + + G ++E
Sbjct: 652 KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEE 711

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
              L   + + G  P   +   +++ +  RG    A  + S++  K          MLI+
Sbjct: 712 FDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLIS 771

Query: 271 MCGR 274
           +  R
Sbjct: 772 LLSR 775



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 66/150 (44%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++I+    K+  VD A ++F    + + Q  +  +N ++ AL +      A  L   +  
Sbjct: 627 NIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISS 686

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G VPD  TY ++       G + E  +    M   G  P  R  + LV+ LL+ G +  
Sbjct: 687 YGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITR 746

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKS 170
           A   ++K+ ++ F L+  T   LI  + + 
Sbjct: 747 AGAYLSKLDEKNFSLEASTTAMLISLLSRD 776



 Score = 48.9 bits (115), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 108/306 (35%), Gaps = 85/306 (27%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA-------YALIRRMIR 80
           G  GL D+A+++F+          ++ +N LL A+  V     +        +L  RMIR
Sbjct: 26  GSLGL-DDALKLFDGLLTHARPASIIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIR 84

Query: 81  K---GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           +      PD  TY+IL+  +C  G+                                   
Sbjct: 85  ECTIKVTPDLCTYSILIGCFCRMGR----------------------------------- 109

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYK 196
           LE        ++K G+ ++    N L++ +C +  +   +++    + +LG   DV +Y 
Sbjct: 110 LEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYN 169

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRRGQFDDAFCFFSEM 253
            L+         +EA  LLH + +   +  P     YA +I G F  GQ D         
Sbjct: 170 TLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVD--------- 220

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
                                     +A N  +EM + G+ P    +  V DGL      
Sbjct: 221 --------------------------KAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVV 254

Query: 314 DLAEKI 319
           D AE +
Sbjct: 255 DRAEGV 260


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 116/266 (43%), Gaps = 2/266 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L+ AL   K    A  +I+ M  KG  PD  TY I +N +C  G  ++A     
Sbjct: 357 VFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFD 416

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM +K   P V     L+        +  A++   K IK+G + D+  FN+LI+  C +G
Sbjct: 417 EMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNG 476

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++   ++   +    +  D  T+  L+    +   ++EA +LL  + E G KP    Y 
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYN 536

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +RG   DA   F EM   G  P    Y  LI    + G    A   L EM   
Sbjct: 537 TLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSK 596

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAE 317
           G+TP    +  V + +K     DL E
Sbjct: 597 GITPDDSTYLYVIEAMKT--NDDLVE 620



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 137/317 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + MK  NL     T +  I    K   ++ A  V  K          + YN+L+   
Sbjct: 273 KIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGC 332

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A+A    M+ +G V    TY +L++A     ++ EA++ ++EM +KG  P V
Sbjct: 333 CNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDV 392

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              ++ + G    G  + A  + ++M+++     +ET+ SLI+   K   +    E +  
Sbjct: 393 VTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKK 452

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             K G+  D+  +  LI      G ID AF+LL  +      P    +  +++G  R  +
Sbjct: 453 SIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERK 512

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A     EMK +G  P+   Y  LI+   + G   +A     EM  +G  P    ++ 
Sbjct: 513 VEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNA 572

Query: 303 VTDGLKNCGKHDLAEKI 319
           +  G    G+ D AE++
Sbjct: 573 LIQGYSKIGEADHAEEL 589



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 6/326 (1%)

Query: 2   WKT----IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           WK     I  M+ Y +  +  T + +I  +   G  + A ++F      N +     YNS
Sbjct: 233 WKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNS 292

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            +  LC+ +    A  ++ +++  G VP+  TY  L++  C+ G + +A  +  EM ++G
Sbjct: 293 FISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRG 352

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
               V   +LL+  L     +E A+ M+ +M ++G   D+ T+N  I   C+ G  +  +
Sbjct: 353 IVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKAL 412

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  + +  +   V TY  LI    K   + EA       +++G  P   ++  +I G 
Sbjct: 413 SLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGH 472

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              G  D AF    EM      P+   +  L+    R  +  EA   L EM E G+ P  
Sbjct: 473 CVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDH 532

Query: 298 RCFDLVTDGLKNCGKHDLAEKIELLE 323
             ++ +  G    G  D+ + +E+ +
Sbjct: 533 ISYNTLISGYSKRG--DMKDALEVFD 556



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 2/285 (0%)

Query: 39  VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
           V+ +    N +  ++ +N ++  LC    +  A   I  M   G  P+  TY  ++N +C
Sbjct: 204 VYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYC 263

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
             GK   A +  + M DK   P     +  +  L     +E A  ++ K+++ G V +  
Sbjct: 264 LRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAV 323

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+N+LI+  C  G+++        +   G+ A V TY +LI A+     I+EA  ++  +
Sbjct: 324 TYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEM 383

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G +P    Y   I G  R G    A   F EM  K   P    YT LI + G+  R 
Sbjct: 384 REKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRM 443

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            EA     +  + G+ P    F+ + DG  +C   ++    +LL+
Sbjct: 444 SEAEEKFKKSIKEGMLPDIIMFNALIDG--HCVNGNIDRAFQLLK 486



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 132/322 (40%), Gaps = 2/322 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W   E M   N+  S  T +++I    + G    A +       +  +  V+ YN+++  
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C    F  A  + + M  K   PD  TY   ++  C   ++ EA   L ++ + G  P 
Sbjct: 262 YCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPN 321

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ G  N G L+ A    ++M+ +G V  + T+N LI  +     +E   +M  
Sbjct: 322 AVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIK 381

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  DV TY I I    + G   +A  L   +VE   +P    Y  +I    +R 
Sbjct: 382 EMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRN 441

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A   F +   +G  P+  ++  LI      G    A   L EM    + P    F+
Sbjct: 442 RMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFN 501

Query: 302 LVTDGLKNCGKHDLAEKIELLE 323
            +  G   C +  + E  +LL+
Sbjct: 502 TLMQGY--CRERKVEEAKKLLD 521



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 10/213 (4%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+  + +T + +I+ FGK   +  A E F K         ++++N+L+   C       A
Sbjct: 422 NIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRA 481

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           + L++ M     VPD+ T+  L+  +C   K+ EA++ L EM ++G  P     + L+ G
Sbjct: 482 FQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISG 541

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G ++ A ++ ++M+  GF   L T+N+LI+   K GE +   E+   +   G+  D
Sbjct: 542 YSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPD 601

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
            STY  +I          EA +   +LVE+  K
Sbjct: 602 DSTYLYVI----------EAMKTNDDLVENDDK 624



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 105/219 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ I  + + G    A+ +F++    N +  V  Y SL+    +      A    ++ 
Sbjct: 394 TYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKS 453

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++G +PD   +  L++  C +G +  A + L+EM +    P     + L+QG      +
Sbjct: 454 IKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKV 513

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK+++++M ++G   D  ++N+LI    K G+++  +E++  +  LG    + TY  L
Sbjct: 514 EEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNAL 573

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           I   SK G  D A  LL  +   G  P  S Y  +I+ M
Sbjct: 574 IQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 122/280 (43%), Gaps = 2/280 (0%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           +  L+++ LL A C+ +    A   +  M     +P   T   L++      K++ A   
Sbjct: 145 KTTLVFDLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFV 204

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            +EM        +   ++++  L   G  + AK  +  M   G   ++ T+N++I   C 
Sbjct: 205 YEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL 264

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G+ E   +++ ++    L  D  TY   I  + K   I+EA  +L  L+E G  P    
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVT 324

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I G   +G  D AF +  EM  +G   +   Y +LI       R  EA + + EM 
Sbjct: 325 YNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMR 384

Query: 290 EMGLTPISRCFDLVTDGLKNCG--KHDLAEKIELLEVSLR 327
           E G+ P    +++  +G   CG  K  L+   E++E ++R
Sbjct: 385 EKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIR 424



 Score = 45.4 bits (106), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K ++ MK   +     + + +I  + K G + +A+EVF++  +      +L YN+L+   
Sbjct: 518 KLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGY 577

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
            ++     A  L+R M  KG  PD  TY  ++ A  ++  + E  +
Sbjct: 578 SKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKTNDDLVENDD 623


>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Glycine max]
          Length = 564

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 132/270 (48%), Gaps = 1/270 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  I+LMK   + ++  T S ++  + + GL   AV  FN+   + C   ++ ++ ++ +
Sbjct: 198 WHVIDLMKSRGVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISS 257

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+ +  + A +    + +  F PD   Y  LV+ WC +G + +A+E   +M   G  P 
Sbjct: 258 LCKKRRANEAQSFFDSL-KHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPN 316

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V    +++  L   G +  A  + ++MI  G   +  TFNSL+    K+G  E  +++Y 
Sbjct: 317 VYTYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYN 376

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +LG  AD  +Y  +I +  +   ++EA ++L+ +V+ G  P  S +  I   + +  
Sbjct: 377 QMKRLGCPADTISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLH 436

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             + A   ++ MK     PN   Y +L+ M
Sbjct: 437 DVNGAHRMYARMKELNCQPNTLTYNILMRM 466



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 1/153 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K + LM    ++ +  T + I     K   V+ A  ++ +    NCQ   L YN L+   
Sbjct: 408 KILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMF 467

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM-SDKGFNPP 121
            E +       + + M      P+  TY IL++ +C       A + + EM  +K   P 
Sbjct: 468 AESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEMVEEKCLRPN 527

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154
           +   + +++ L  AG L+  +++V+KM+ +GFV
Sbjct: 528 LSVYETVLELLRKAGQLKKHEELVDKMVARGFV 560


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 137/312 (43%), Gaps = 6/312 (1%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+    Q LSL    F K      A  ++ +    N +  +  +N ++  LC+      A
Sbjct: 180 NIETCNQMLSL----FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKA 235

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              I  M   G  P+  TY  +++  C  GK + A+   Q M DKG  P     +  + G
Sbjct: 236 KEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISG 295

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G LE A  ++ KM++ G V +  T+N+LI+  C  G+++        +   G+ A 
Sbjct: 296 LCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMAS 355

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           + TY + I A+   G + +A  ++  + E G  P    +  +I G  R G    AF    
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLD 415

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM  KG  P    YT LI + G+  R  EA     ++ + GL P    F+ + DG  +C 
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDG--HCA 473

Query: 312 KHDLAEKIELLE 323
             ++    +LL+
Sbjct: 474 NGNIDRAFQLLK 485



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 124/277 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +   G +D A    ++  +      ++ YN  + AL        A  +I+ M
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +PD  T+ IL+N +C  G  + A   L EM  KG  P +     L+  L     +
Sbjct: 383 REKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRM 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + +K+ ++G + D+  FN+LI+  C +G ++   ++   +  + +  D  TY  L
Sbjct: 443 KEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTL 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    + G ++EA +LL  +   G KP    Y  +I G  +RG   DAF    EM   G 
Sbjct: 503 MQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGF 562

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P    Y  LI    +      A   L EM   G+TP
Sbjct: 563 DPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITP 599



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 140/328 (42%), Gaps = 1/328 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W     M   N+  S  T +++I    K G +  A E          +  V+ YN+++  
Sbjct: 201 WVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHG 260

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C    F  A  + + M  KG  PD  TY   ++  C  G++ EA   + +M + G  P 
Sbjct: 261 HCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L+ G  N G L+ A    ++MI +G +  L T+N  I  +   G +     M  
Sbjct: 321 AVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIK 380

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+  D  T+ ILI    + G    AF LL  +V  G +P    Y  +I  + +R 
Sbjct: 381 EMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRN 440

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  +A   FS+++ +G  P+  V+  LI      G    A   L EM  M + P    ++
Sbjct: 441 RMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYN 500

Query: 302 LVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            +  G    GK + A ++ L E+  R +
Sbjct: 501 TLMQGYCREGKVEEARQL-LDEMKRRGI 527



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 6/320 (1%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + MK   L     T +  I    K G ++ A  +  K          + YN+L+   C  
Sbjct: 275 QTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNK 334

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AYA    MI KG +    TY + ++A    G+M +A   ++EM +KG  P     
Sbjct: 335 GDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTH 394

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++L+ G    G  + A  ++++M+ +G    L T+ SLI  + K   ++    ++  + +
Sbjct: 395 NILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQ 454

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQF 243
            GL  D+  +  LI      G ID AF+LL  +  D  K  P    Y  +++G  R G+ 
Sbjct: 455 EGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM--DNMKVLPDEITYNTLMQGYCREGKV 512

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           ++A     EMK +G  P+   Y  LI+   + G   +A     EM   G  P    ++ +
Sbjct: 513 EEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNAL 572

Query: 304 TDGLKNCGKHDLAEKIELLE 323
             GL  C   +     ELL+
Sbjct: 573 IQGL--CKNQEGEHAEELLK 590



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 124/301 (41%), Gaps = 2/301 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L V P   T + II      G    A  +F        +     YNS +  LC+      
Sbjct: 245 LGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEE 304

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  LI +M+  G VP+  TY  L++ +C+ G + +A  +  EM  KG    +   +L + 
Sbjct: 305 ASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIH 364

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L   G +  A  M+ +M ++G + D  T N LI   C+ G+ +    +   +   G+  
Sbjct: 365 ALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQP 424

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            + TY  LI  + K   + EA  L   + ++G  P   ++  +I G    G  D AF   
Sbjct: 425 TLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLL 484

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM      P+   Y  L+    R G+  EA   L EM   G+ P    ++ +  G    
Sbjct: 485 KEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKR 544

Query: 311 G 311
           G
Sbjct: 545 G 545



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 93/184 (50%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I   GK   +  A  +F+K         ++++N+L+   C       A+ L++ M
Sbjct: 428 TYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEM 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
                +PD+ TY  L+  +C  GK+ EA++ L EM  +G  P     + L+ G    G +
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++ ++M+  GF   + T+N+LI+ +CK+ E E   E+   +   G+  D STY  +
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSI 607

Query: 199 IPAV 202
           I A+
Sbjct: 608 IEAM 611



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 110/233 (47%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M+   +     T +++I  + + G    A  + ++      Q  ++ Y SL++ L +
Sbjct: 379 IKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGK 438

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A AL  ++ ++G +PD   +  L++  C++G +  A + L+EM +    P    
Sbjct: 439 RNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEIT 498

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+QG    G +E A+Q++++M ++G   D  ++N+LI    K G+++    +   + 
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
             G    + TY  LI  + K    + A  LL  +V  G  P  S Y  II+ M
Sbjct: 559 TTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%)

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++GFV ++ET N ++    K    +    +Y  + ++ + + + T+ I+I  + K G + 
Sbjct: 174 EKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLK 233

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A   + ++   G KP    Y  II G   RG+F  A   F  MK KG  P+   Y   I
Sbjct: 234 KAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFI 293

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +   + GR  EA+  + +M E GL P +  ++ + DG  N G  D A
Sbjct: 294 SGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKA 340


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  115 bits (288), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 13/333 (3%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K Y +     T +++I  F K+ +VD     F + T+F+C   V+ YN+L+  LC  
Sbjct: 215 EMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRA 274

Query: 66  KLFHGAYALIRRMIR--KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                A+ L+  M +  K   PD  TY  L+  +C   ++ EA + L+EM+ +G  P + 
Sbjct: 275 GKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIV 334

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
             + L++GL  A   +  K+++ +M    G + D  TFN+LI + C +G ++   +++ +
Sbjct: 335 TYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFEN 394

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-------GHKPFPSLYAPIIK 235
           + KL + AD ++Y +LI  + + G   +A  L   L E        G KP  + Y  + +
Sbjct: 395 MKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQ 454

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +   G+   A     ++  +G         +++  C + G +      LV M      P
Sbjct: 455 YLCENGKTKKAERVLRQLMKRGTQDPLSYQIVILGHC-KEGSYENGYGLLVWMLRRDFLP 513

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
               +D + DG     K  LA+  E LE  L+S
Sbjct: 514 DIDIYDYLIDGFLRKDKPLLAK--ETLEKMLKS 544



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 109/266 (40%), Gaps = 8/266 (3%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  +K+   A+     +  KGF  + +TY I++        +  A+ FL  + +K  N 
Sbjct: 91  TLRHIKVPTKAFLFFNWIHEKGFSHNPQTYFIMLEILGREKNLNIARNFLYSI-EKRSNG 149

Query: 121 PVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
            V+  D     L+     AG  + + ++   M   G    + TFNS++  + K G     
Sbjct: 150 EVKLEDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMA 209

Query: 177 VEMYYSVCKL-GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
            E+Y  + K  G+  D  TY ILI    K  M+DE F     +      P    Y  ++ 
Sbjct: 210 KEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVD 269

Query: 236 GMFRRGQFDDAFCFFSEM--KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           G+ R G+   A    + M  K K   P+   YT LI    R     EA + L EM   GL
Sbjct: 270 GLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGL 329

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKI 319
            P    ++ +  GL    K D  ++I
Sbjct: 330 KPNIVTYNTLIKGLCEAQKWDKMKEI 355



 Score = 70.9 bits (172), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 8/252 (3%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           + R +  L+ ++  +G  +E+ +  + M   G +P V   + ++  LL  G    AK++ 
Sbjct: 154 EDRFFNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVY 213

Query: 146 NKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
           ++M+K  G   D  T+N LI   CK+  V+     +  +       DV TY  L+  + +
Sbjct: 214 DEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCR 273

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           AG I  A  L++ + +      P +  Y  +I+G  R+ + D+A     EM  +G  PN 
Sbjct: 274 AGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNI 333

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLA----E 317
             Y  LI       ++ +    L +M  + G  P +  F+ + +     G  D A    E
Sbjct: 334 VTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFE 393

Query: 318 KIELLEVSLRSV 329
            ++ LEVS  S 
Sbjct: 394 NMKKLEVSADSA 405



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 8/228 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-------TAFNCQQCVLL 54
           +K  E MK   +S    + S++I    + G    A  +F++        +++  +     
Sbjct: 389 FKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKPLAAS 448

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y  +   LCE      A  ++R+++++G   D  +Y I++   C  G        L  M 
Sbjct: 449 YKCMFQYLCENGKTKKAERVLRQLMKRG-TQDPLSYQIVILGHCKEGSYENGYGLLVWML 507

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            + F P +   D L+ G L       AK+ + KM+K  +     T++S++  + + G V 
Sbjct: 508 RRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVH 567

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
               +   + +  +  +++     +  +   G+ D+AF++   + ++G
Sbjct: 568 ESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNG 615



 Score = 45.1 bits (105), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 38/205 (18%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           L Y  ++   C+   +   Y L+  M+R+ F+PD   Y  L++ +    K   A+E L++
Sbjct: 481 LSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEK 540

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYL-ESAK---QMVNKMIKQGFVLDLETFN------- 161
           M    + P       ++  LL  G + ESA     M+ + I+Q      +          
Sbjct: 541 MLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGL 600

Query: 162 -----SLIETICKSGEVEFCVEMYYSV------------CKLGLCA-------DVSTYKI 197
                 + E I K+G   FCV+M   V            CKL L +       D+    I
Sbjct: 601 QDKAFKITELIYKNG---FCVKMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNI 657

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDG 222
           +I  + K     EAF L + LV+ G
Sbjct: 658 VILDLCKLNKASEAFSLCYELVDKG 682


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 142/298 (47%), Gaps = 8/298 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+  ++  F +   V +AV + +K      +  ++ YN+++ +LC+ +  + A    + +
Sbjct: 157 TIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEI 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            RKG  P+  TY  LVN  C+SG+  +A   L++M  +   P V     L+   +  G +
Sbjct: 217 GRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKV 276

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK++  +M++     D+ T++SLI  +C    ++   +M+  +   G   DV +Y  L
Sbjct: 277 LEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTL 336

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    KA  +++  +L   + + G       Y  +I+G F+ G  D A  FFS+M   G 
Sbjct: 337 INGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGV 396

Query: 259 PPNRPVYTMLI-TMCGRGGRFVEAANYLVE---MTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   Y +L+  +C  G   +E A  + E    +EM L  ++  +  V  G+   GK
Sbjct: 397 SPDIWTYNILLGGLCDNG--LLEKALVIFEDMQKSEMDLDIVT--YTTVIQGMCKTGK 450



 Score =  104 bits (259), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 132/277 (47%), Gaps = 6/277 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +++ F K+G V  A E+F +    +    ++ Y+SL+  LC       A  +   M
Sbjct: 262 TYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  PD  +Y  L+N +C + ++ +  +  ++MS +G        + L+QG    G +
Sbjct: 322 VSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDV 381

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A++  ++M   G   D+ T+N L+  +C +G +E  + ++  + K  +  D+ TY  +
Sbjct: 382 DKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTV 441

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +++A+ L  +L   G KP    Y  ++ G+  +G   +    +++MK +G 
Sbjct: 442 IQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGL 501

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             N  +      +C   G    +A  + +M   G  P
Sbjct: 502 MKNDSM------LCLGDGDITISAELIKKMLSCGYAP 532



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 2/226 (0%)

Query: 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161
           K+ +A    +EM      P +   + L+  ++     +    +  KM   G   DL TFN
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
            +I   C   +V   + +   + KLG   D  T   L+    +   + +A  L+  +VE 
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G++P    Y  II  + +  + +DA  FF E+  KG  PN   YT L+      GR+ +A
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDA 244

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           A  L +M +  +TP    +  + D     GK  + E  E+ E  +R
Sbjct: 245 ARLLRDMIKRKITPNVITYSALLDAFVKNGK--VLEAKEIFEEMVR 288



 Score = 71.2 bits (173), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 1/246 (0%)

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L ++KL H A  L R M++    P    +  L++A     K        ++M   G    
Sbjct: 61  LRDIKL-HDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRND 119

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   ++++        +  A  ++ KM+K G+  D  T  SL+   C+   V   V +  
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + ++G   D+  Y  +I ++ K   +++A      +   G +P    Y  ++ G+   G
Sbjct: 180 KMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +++DA     +M  +   PN   Y+ L+    + G+ +EA     EM  M + P    + 
Sbjct: 240 RWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 302 LVTDGL 307
            + +GL
Sbjct: 300 SLINGL 305



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 64/147 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  +  T + +I+ F + G VD A E F++  +F     +  YN LL  LC+  L
Sbjct: 356 MSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGL 415

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  +   M +     D  TY  ++   C +GK+ +A      +S KG  P +     
Sbjct: 416 LEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTT 475

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFV 154
           ++ GL   G     + +  KM ++G +
Sbjct: 476 MMSGLCTKGLQHEVEALYTKMKQEGLM 502


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ + ++M  +G   D  T+ +LI+  CK G +E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYVPS 415



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +J  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 3/247 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           + D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +    
Sbjct: 63  ISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWG 122

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
              + ++ G+   L  FN L+ +  K GE+     ++ ++ K GL   V ++  L+    
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN  
Sbjct: 183 KLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL- 322
            +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLTD 300

Query: 323 EVSLRSV 329
           E+S++ +
Sbjct: 301 EMSMKGL 307


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 139/315 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   +     T   +I    K G ++ A  +  K          + YN+L+   C 
Sbjct: 294 LDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCN 353

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+     M+R+  +P   TY +L++A    GKM EA   +++M D G  P    
Sbjct: 354 KGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSIT 413

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++L+ G    G  + A  + ++MI +G    L T+ SLI  + K   ++   +++  + 
Sbjct: 414 YNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKII 473

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G   D+  +  LI      G +D AF LL  + +    P    Y  +++G  R G+ +
Sbjct: 474 REGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVE 533

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     EMK +G  P+   Y  LI+   + G   +A     EM  +G  P    ++ + 
Sbjct: 534 EARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALI 593

Query: 305 DGLKNCGKHDLAEKI 319
            GL    + DLAE++
Sbjct: 594 QGLCKNQQGDLAEEL 608



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 139/318 (43%), Gaps = 2/318 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           ++MK   +    +T + ++  F K    +    ++ +      +  V  +N ++  LC+ 
Sbjct: 190 DMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKE 249

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A   I  M   G  P+  TY  +++ +CS G++  A+  L  M ++G  P     
Sbjct: 250 GKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTY 309

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G+   G LE A  ++ KM + G +    T+N+LI+  C  G++         + +
Sbjct: 310 GSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVR 369

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +   VSTY +LI A+   G +DEA  ++ ++ + G  P    Y  +I G  R G    
Sbjct: 370 RAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKK 429

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           AF    EM  KG  P    YT LI +  +  R   A +   ++   G +P    F+ + D
Sbjct: 430 AFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALID 489

Query: 306 GLKNCGKHDLAEKIELLE 323
           G  +C   +L     LL+
Sbjct: 490 G--HCANGNLDRAFALLK 505



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 127/328 (38%), Gaps = 35/328 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +  A +          +  V+ YN+++   C      GA  ++  M
Sbjct: 238 TFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIM 297

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-------FN------------ 119
             +G  PD  TY  L++  C  GK+ EA   L++M + G       +N            
Sbjct: 298 KNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDL 357

Query: 120 ----------------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163
                           P V   +LL+  L   G ++ A  M+  M   G V D  T+N L
Sbjct: 358 VKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           I   C+ G  +    ++  +   G+   + TY  LI  +SK   +  A  L   ++ +G 
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P   ++  +I G    G  D AF    EM  +   P+   Y  L+    R G+  EA  
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARE 537

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            L EM   G+ P    ++ +  G    G
Sbjct: 538 LLKEMKRRGIRPDHISYNTLISGYSKRG 565



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           D+A E F+          +  +N++L    ++      + L   M R        T+ I+
Sbjct: 183 DDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIM 242

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +N  C  GK+++A++F+  M + G  P V   + ++ G  + G +E A+ +++ M  +G 
Sbjct: 243 INVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGV 302

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D  T+ SLI  +CK G++E    +   + ++GL     TY  LI      G + +AF 
Sbjct: 303 EPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFG 362

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
               +V     P  S Y  +I  +F  G+ D+A     +M   G  P+   Y +LI    
Sbjct: 363 YRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYC 422

Query: 274 RGGRFVEAANYLVEMTEMGLTP 295
           R G   +A N   EM   G+ P
Sbjct: 423 RCGNAKKAFNLHDEMISKGIQP 444



 Score = 97.4 bits (241), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 131/314 (41%), Gaps = 35/314 (11%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   L  +  T + +I+ +   G +  A    ++         V  YN L+ AL  
Sbjct: 329 LEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFL 388

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV-- 122
                 A  +I+ M   G VPD  TY IL+N +C  G  ++A     EM  KG  P +  
Sbjct: 389 EGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVT 448

Query: 123 ----------RGR-----------------------DLLVQGLLNAGYLESAKQMVNKMI 149
                     R R                       + L+ G    G L+ A  ++ +M 
Sbjct: 449 YTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMD 508

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           K+  V D  T+N+L++  C+ G+VE   E+   + + G+  D  +Y  LI   SK G I+
Sbjct: 509 KRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIN 568

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +AF +   ++  G  P    Y  +I+G+ +  Q D A     EM  KG  P+   Y  LI
Sbjct: 569 DAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLI 628

Query: 270 TMCGRGGRFVEAAN 283
              G+     EA++
Sbjct: 629 EGIGKVDDSSEASD 642



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 2/192 (1%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D+L++        + A +  + M ++G V  +ETFN+++    K  + E    +Y  + +
Sbjct: 170 DMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFR 229

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           L + + V T+ I+I  + K G + +A   + ++   G KP    Y  +I G   RG+ + 
Sbjct: 230 LKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEG 289

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      MK +G  P+   Y  LI+   +GG+  EA+  L +M E+GL P +  ++ + D
Sbjct: 290 ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349

Query: 306 GLKNCGKHDLAE 317
           G   C K DL +
Sbjct: 350 GY--CNKGDLVK 359



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 99/228 (43%)

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           + +L+ A C   +  +A E    M +KG  P +   + ++   L     E+   +  +M 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           +      + TFN +I  +CK G+++   +   S+  LG+  +V TY  +I      G ++
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
            A  +L  +   G +P    Y  +I GM + G+ ++A     +MK  G  P    Y  LI
Sbjct: 289 GARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
                 G  V+A  Y  EM    + P    ++L+   L   GK D A+
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEAD 396


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 123/255 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+ L+  L +    +  Y L   M  +G V D R Y I+++ +C  GK+ +A + L+EM 
Sbjct: 555 YSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK 614

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KGF P V     ++ GL     L+ A  +  +   +   L++  ++SLI+   K G ++
Sbjct: 615 TKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRID 674

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   + + GL  ++ T+  L+ A+ KA  I+EA     ++ E    P    Y  +I
Sbjct: 675 EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILI 734

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+ +  +F+ AF F+ EM+ +G  P+   YT +I+   + G   EA          G  
Sbjct: 735 NGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGV 794

Query: 295 PISRCFDLVTDGLKN 309
           P S C++ + +GL N
Sbjct: 795 PDSACYNAMIEGLSN 809



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 143/300 (47%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  + +T++++++   K   +D A  +F +     C    + + SL+  L +V  
Sbjct: 403 MQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR 462

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY +  +M+      +   Y  L+  + + G+  +  +  ++M ++  +P ++  + 
Sbjct: 463 VDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNT 522

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            +  +  AG  E  + M  ++  + FV D  +++ LI  + K+G      E++YS+ + G
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQG 582

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D   Y I+I    K G +++A++LL  +   G +P    Y  +I G+ +  + D+A+
Sbjct: 583 CVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAY 642

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F E K K    N  +Y+ LI   G+ GR  EA   L E+ + GLTP    ++ + D L
Sbjct: 643 MLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDAL 702



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 151/361 (41%), Gaps = 46/361 (12%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    ++   L     T + +I    K   +D AVE+F          C   YN+++  
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY+L+ R   KG +P    Y  ++      GK+ EA +  +EM  K   P 
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPN 376

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCV--- 177
           +   ++L+  L  AG L++A ++ + M K G   ++ T N +++ +CKS ++ E C    
Sbjct: 377 LSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFE 436

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL---------------------- 215
           EM Y VC      D  T+  LI  + K G +D+A+++                       
Sbjct: 437 EMDYKVC----TPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNF 492

Query: 216 --HNLVEDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
             H   EDGHK           P   L    +  MF+ G+ +     F E+K +   P+ 
Sbjct: 493 FNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y++LI    + G   E       M E G    +R +++V DG   CGK + A   +LL
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKA--YQLL 610

Query: 323 E 323
           E
Sbjct: 611 E 611



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 3/324 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K        ++ S++I    K G  +   E+F       C      YN ++   C+ 
Sbjct: 541 EEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + AY L+  M  KGF P   TY  +++      ++ EA    +E   K     V   
Sbjct: 601 GKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIY 660

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +++++G   +L T+NSL++ + K+ E+   +  + S+ +
Sbjct: 661 SSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE 720

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           L    +  TY ILI  + K    ++AF     + + G KP    Y  +I G+ + G   +
Sbjct: 721 LKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F   K  G  P+   Y  +I     G R ++A +   E    GL   ++   ++ D
Sbjct: 781 AGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLD 840

Query: 306 GLKNCGKHDLAEKIELLEVSLRSV 329
            L    K+D  E+  ++   LR  
Sbjct: 841 TLH---KNDCLEQAAIVGAVLRET 861



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 134/291 (46%), Gaps = 1/291 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK  +L       ++ I+ FGK G VD A + F++  A   +   + Y S++  LC+
Sbjct: 226 LDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCK 285

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +   + +   VP    Y  ++  + S+GK  EA   L+    KG  P V  
Sbjct: 286 ANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIA 345

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++  L   G ++ A ++  +M K+    +L T+N LI+ +C++G+++   E+  S+ 
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQ 404

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K GL  +V T  I++  + K+  +DEA  +   +      P    +  +I G+ + G+ D
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           DA+  + +M       N  VYT LI      GR  +      +M     +P
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSP 515



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 140/319 (43%), Gaps = 1/319 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M+      +    + +I  F K G VD+A+ + ++  + +    ++LYN  + 
Sbjct: 187 MLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCID 246

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +  +V     A+     +   G  PD+ TY  ++   C + ++ EA E  + +      P
Sbjct: 247 SFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVP 306

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G  +AG  + A  ++ +   +G +  +  +N ++  + K G+V+  ++++
Sbjct: 307 CTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVF 366

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K     ++STY ILI  + +AG +D AF L  ++ + G  P       ++  + + 
Sbjct: 367 EEM-KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKS 425

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + D+A   F EM  K   P+   +  LI   G+ GR  +A     +M +      S  +
Sbjct: 426 QKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVY 485

Query: 301 DLVTDGLKNCGKHDLAEKI 319
             +     N G+ +   KI
Sbjct: 486 TSLIKNFFNHGRKEDGHKI 504



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 111/246 (45%), Gaps = 1/246 (0%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            Y +++ M +  F P    Y  L+ A+ +           Q+M + G+ P V     L++
Sbjct: 152 GYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIR 211

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G ++SA  ++++M       D+  +N  I++  K G+V+   + ++ +   GL  
Sbjct: 212 GFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKP 271

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D  TY  +I  + KA  +DEA  +  +L ++   P    Y  +I G    G+FD+A+   
Sbjct: 272 DEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL 331

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
              + KG  P+   Y  ++T   + G+  EA     EM +    P    ++++ D L   
Sbjct: 332 ERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRA 390

Query: 311 GKHDLA 316
           GK D A
Sbjct: 391 GKLDTA 396



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 3/269 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y +L+ A   V        L ++M   G+ P    +  L+  +   G++  A   L EM 
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
               +  +   ++ +      G ++ A +  +++   G   D  T+ S+I  +CK+  ++
Sbjct: 231 SSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLD 290

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             VEM+  + K         Y  +I     AG  DEA+ LL      G  P    Y  I+
Sbjct: 291 EAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCIL 350

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
             + + G+ D+A   F EMK K   PN   Y +LI M  R G+   A      M + GL 
Sbjct: 351 TCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLF 409

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           P  R  +++ D L  C    L E   + E
Sbjct: 410 PNVRTVNIMVDRL--CKSQKLDEACAMFE 436



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 109/270 (40%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
            C   YNSLL  +   + F     ++  M   GF P   T   +V     + K+RE  + 
Sbjct: 96  HCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDV 155

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +Q M    F P       L+       + +    +  +M + G+   +  F +LI    K
Sbjct: 156 VQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAK 215

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
            G V+  + +   +    L AD+  Y + I +  K G +D A++  H +  +G KP    
Sbjct: 216 EGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVT 275

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I  + +  + D+A   F  ++     P    Y  +I   G  G+F EA + L    
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQR 335

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             G  P    ++ +   L+  GK D A K+
Sbjct: 336 AKGSIPSVIAYNCILTCLRKMGKVDEALKV 365



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 95/245 (38%), Gaps = 35/245 (14%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK      +  T   +I+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 607 YQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDG 666

Query: 62  LCEVKLFHGAYALIRRMIRKGF-----------------------------------VPD 86
             +V     AY ++  +++KG                                     P+
Sbjct: 667 FGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPN 726

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
           + TY IL+N  C   K  +A  F QEM  +G  P       ++ GL  AG +  A  + +
Sbjct: 727 QVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFD 786

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           +    G V D   +N++IE +           ++    + GL     T  +L+  + K  
Sbjct: 787 RFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKND 846

Query: 207 MIDEA 211
            +++A
Sbjct: 847 CLEQA 851


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K G V  A ++            +  Y SL+   C V   + A  L   M
Sbjct: 274 TFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSM 333

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG+ PD  +Y +L+N +C + K+ EA +   EM   G  P V+   +L++ L  AG +
Sbjct: 334 PSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKV 393

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + AK++   +       DL      ++ +CK+G +   ++++  +    +  D+ T+  L
Sbjct: 394 DDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCL 453

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG ++ A+ L   L E+G +P    Y+ +I G  ++GQ D A   F +M+  G 
Sbjct: 454 IDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGC 513

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y++L+       +  +    L  M E  + P    + +V D +  C      E 
Sbjct: 514 SPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMV--CKDEKYKEW 571

Query: 319 IELLE 323
           ++LL+
Sbjct: 572 LDLLQ 576



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 134/288 (46%), Gaps = 10/288 (3%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E+M    +  +  T + +I+ F   G +++A E+F    +   +  V+ YN L+   
Sbjct: 293 KLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGY 352

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L   M+  G  PD +T  +L+ A   +GK+ +A+E  + +      P  
Sbjct: 353 CKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIK-----PYA 407

Query: 123 RGRDL-----LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             +DL      + GL   GY+  A ++ N++      LD+ETF  LI+ +CK+G++E   
Sbjct: 408 MPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAW 467

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  + + G+  D   Y  +I    K G +D+A  L   + E+G  P    Y+ +++G 
Sbjct: 468 ELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGF 527

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
           +   + +        M  K   P+  +Y ++  M  +  ++ E  + L
Sbjct: 528 YESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 575



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 132/311 (42%), Gaps = 41/311 (13%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
           + +  +N LL  L +++ +   ++L ++M   G  PD  T  IL+N  C+  ++ E    
Sbjct: 89  RSIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAA 148

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
           +  +  +G+ P V     L++GL     +  A ++  +M K G   ++ T+ +LI+ +C 
Sbjct: 149 MAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCA 208

Query: 170 SGEVEFCVEMY--------------------YSVCKLGLCA------------------- 190
            G +   ++ +                    YS+   GLC                    
Sbjct: 209 LGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGV 268

Query: 191 --DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC 248
             +V T+ +LI  + K G + +A +LL  +++ G  P    Y  +IKG    G  + A  
Sbjct: 269 QPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKE 328

Query: 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308
            F  M  KG+ P+   Y MLI    +  +  EA     EM  +G+ P  +   ++   L 
Sbjct: 329 LFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALF 388

Query: 309 NCGKHDLAEKI 319
             GK D A+++
Sbjct: 389 LAGKVDDAKEL 399



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 81/194 (41%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G VD+A E+F     +   + + +    L  LC+      A  L   +       D  T+
Sbjct: 391 GKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETF 450

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++  C +GK+  A E  +++ ++G  P       ++ G    G ++ A  +  KM +
Sbjct: 451 GCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEE 510

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   DL T++ L+    +S ++E  V++ + + +  +  D   Y I+   V K     E
Sbjct: 511 NGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKE 570

Query: 211 AFRLLHNLVEDGHK 224
              LL       H+
Sbjct: 571 WLDLLQRFFVQKHR 584



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 2   WKTIELMKPYNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
           W+  E  K Y   + P  +  S +I  F K G VD A  +F K     C   ++ Y+ L+
Sbjct: 467 WELFE--KLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILM 524

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
               E         L+ RMI K   PD   YAI+ +  C   K +E  + LQ
Sbjct: 525 RGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQ 576


>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Brachypodium distachyon]
          Length = 642

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 125/256 (48%), Gaps = 6/256 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+++ ALC        + ++  M+ +G  PD   Y  +V A+C + ++R A   L  M 
Sbjct: 230 YNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMV 289

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G  P V+   +LV+G  + G +  A  M N M+ +G+     ++N LI  +C  G+++
Sbjct: 290 TEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLK 349

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++  + K     DV TY  LI   SKAG +D A  + +++   G KP   +Y  ++
Sbjct: 350 RALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMV 409

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI-TMC--GRGGRFVEAANYLVEMTEM 291
             + ++  FD A     +M ++  PPN   +  LI ++C  GR GR   A N    M   
Sbjct: 410 DVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGR---ALNVFHGMRRY 466

Query: 292 GLTPISRCFDLVTDGL 307
           G  P  R ++ +  GL
Sbjct: 467 GCPPNDRTYNELLHGL 482



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 116/238 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S++ A C+ +    A A++ RM+ +G VP+ +T+ +LV  +   GK+ +A      M 
Sbjct: 265 YTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMV 324

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G+ P     ++L++GL + G L+ A  + + M K   + D+ T+++LI+   K+G+++
Sbjct: 325 AEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYSTLIDGFSKAGDLD 384

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             + ++  +   G   +V  Y  ++  + K  M D+A  L+  +  +   P    +  +I
Sbjct: 385 VAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLI 444

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           + +   G+   A   F  M+  G PPN   Y  L+    R G   +A   L EM   G
Sbjct: 445 RSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEMLNHG 502



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 130/318 (40%), Gaps = 7/318 (2%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQ-CVLLYNSLLFA 61
           T++ M+   ++     L   I  F + G  D A++ F +      C    V +YN LL A
Sbjct: 77  TLQEMRLRGVACPEGALVAAICAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDA 136

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L    L      +   M + G  P+  TY +L+ A C + ++  A+  L EM+ KG  P 
Sbjct: 137 LLRENLVAAVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPD 196

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++  L     L+ A+ ++ +M   G      ++N+++  +C    +     +  
Sbjct: 197 EVSHTTIISALCKLDRLDEARGILAEMTPVG-----ASYNAVVHALCGQFRMREVFLVVD 251

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   GL  D   Y  ++ A  KA  +  A  +L  +V +G  P    +  ++KG F  G
Sbjct: 252 EMVHRGLRPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDG 311

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  DA   ++ M  +G  P+   Y +LI      G    A      M +    P  R + 
Sbjct: 312 KVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYS 371

Query: 302 LVTDGLKNCGKHDLAEKI 319
            + DG    G  D+A  I
Sbjct: 372 TLIDGFSKAGDLDVAMSI 389



 Score = 91.3 bits (225), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 35/290 (12%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T S +I+ F K G +D A+ ++N  T   C+  V++Y +++  LC+  +F  A  LI +
Sbjct: 368 RTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVMFDQAENLIDK 427

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +   P+  T+  L+ + C  G+   A      M   G  P  R  + L+ GL   G 
Sbjct: 428 MSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGN 487

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A +M+ +M+  GF L L ++N+ I  +C+                            
Sbjct: 488 CEDALRMLTEMLNHGFELSLVSYNTTISGLCQ---------------------------- 519

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
                    MI EA  LL  ++  G +P    +  II    + G    A      M    
Sbjct: 520 -------MRMIKEAMILLGRMIIQGIQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVN 572

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            P N   YT L++      +  +A  YL++M   G+ P    ++++  G+
Sbjct: 573 CPRNIVAYTSLMSGLCSQHKLDDAMVYLLKMLYEGICPNEATWNVLVRGI 622



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 2/305 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT +++++ F   G V +A+ ++N   A       + YN L+  LC +     A  +   
Sbjct: 298 QTFTVLVKGFFDDGKVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSC 357

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M +   +PD RTY+ L++ +  +G +  A     +M++ G  P V     +V  L     
Sbjct: 358 MGKSDCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMVDVLCKKVM 417

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A+ +++KM  +    +  TFN+LI ++C  G     + +++ + + G   +  TY  
Sbjct: 418 FDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNE 477

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+  + + G  ++A R+L  ++  G +     Y   I G+ +     +A      M I+G
Sbjct: 478 LLHGLFREGNCEDALRMLTEMLNHGFELSLVSYNTTISGLCQMRMIKEAMILLGRMIIQG 537

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   +  +I    + G    AA  L  M  +        +  +  GL  C +H L +
Sbjct: 538 IQPDAFTFNAIIHAYCKEGNVRAAAWMLGRMDAVNCPRNIVAYTSLMSGL--CSQHKLDD 595

Query: 318 KIELL 322
            +  L
Sbjct: 596 AMVYL 600


>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
           mitochondrial-like [Cucumis sativus]
 gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
           mitochondrial-like [Cucumis sativus]
          Length = 482

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 9/317 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF-HGAYA 73
           V+P   S II+ +G+  L D A++VF     F C       N +L  L   + F   A+ 
Sbjct: 139 VTPTAFSYIIKIYGEADLPDKALKVFYTMIDFGCTPSSKQLNRILEILVSHRNFIRPAFD 198

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L +     G +P+ ++Y IL+ A+C +G +  A     +M ++   P V     L+QGL 
Sbjct: 199 LFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLC 258

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL---GLCA 190
               +  A  ++  M+ +G++ D  ++ +L+ ++C+  ++    E Y  +C++   G   
Sbjct: 259 RKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLR---EAYKLLCRMKVKGCNP 315

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D++ Y  +I    + G   +A ++L ++  +G  P    Y  +  G+  +G F+ A  + 
Sbjct: 316 DIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYV 375

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM +KG  P+  V   L+      GR  E+ + L +M + G  P S  ++++  G+  C
Sbjct: 376 EEMTLKGFYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSDTWEIIISGI--C 433

Query: 311 GKHDLAEKIELLEVSLR 327
              D A+  E+ E  L+
Sbjct: 434 EVEDTAKFCEVWEKILK 450



 Score = 45.4 bits (106), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 4/133 (3%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I  F + G   +A ++     +  C   ++ Y SL   LC+  +F  A   +  M  KG
Sbjct: 323 VIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKG 382

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL----NAGYL 138
           F P       LV  + S G++ E+   L++M  +G  P     ++++ G+      A + 
Sbjct: 383 FYPHFSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSDTWEIIISGICEVEDTAKFC 442

Query: 139 ESAKQMVNKMIKQ 151
           E  ++++ K +++
Sbjct: 443 EVWEKILKKDVRR 455


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++ F K G +D+A+ V+ +   F     V+ Y SL+   C+      A      M
Sbjct: 611 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 670

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y+ L++ +C    M  AQ+   E+ + G +P     + ++ G  +   +
Sbjct: 671 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNM 730

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A     KMI      DL T+ +LI+ + K G + F  ++Y  +   G+  D+ T+ +L
Sbjct: 731 EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL 790

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G ++ A ++L  +      P   +Y  +I G FR G   +AF    EM  +G 
Sbjct: 791 VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL 850

Query: 259 PPNRPVYTMLITMCGRGGR 277
            P+   Y +LI    +G R
Sbjct: 851 VPDDVTYDILINGKFKGDR 869



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 136/291 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G +D A  VF+   A + +  V+ Y+ L+    +      A  L  +M+     P   
Sbjct: 516 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF 575

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  ++N  C  G+M EA++ L+   ++GF P     + +V G +  G ++SA  +  +M
Sbjct: 576 TFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREM 635

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            + G   ++ T+ SLI   CKS  ++  ++    + + GL  DV+ Y  LI    K   +
Sbjct: 636 CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDM 695

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   L+E G  P   +Y  +I G       + A  ++ +M     P +   YT L
Sbjct: 696 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTL 755

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    + GR V A++  +EM   G+ P    F ++ +GL N G+ + A KI
Sbjct: 756 IDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKI 806



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 7/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++IE     G ++ A E++ +         V   NSLL    +  L+  A  L    
Sbjct: 402 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 461

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G V +  TY I+++  C  GKM EA   L  M ++G  P V   + ++ G    G +
Sbjct: 462 VDCG-VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 520

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + M+ +    ++ T++ LI+   K G+ E  ++++  +  L +     T+  +
Sbjct: 521 DMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTI 580

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + EA   L N +E+G  P    Y  I+ G  + G  D A   + EM   G 
Sbjct: 581 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 640

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT LI    +  R   A     EM E GL      +  + DG   C + D+   
Sbjct: 641 SPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF--CKRRDMESA 698

Query: 319 ----IELLEVSL 326
                ELLEV L
Sbjct: 699 QDLFFELLEVGL 710



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 142/323 (43%), Gaps = 35/323 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K G  + A+++F++  + N       +N+++  LC+V     A   ++  
Sbjct: 541 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNF 600

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF+P   TY  +V+ +   G +  A    +EM + G +P V     L+ G   +  +
Sbjct: 601 LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRI 660

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-------- 190
           + A +  ++M ++G  LD+  +++LI+  CK  ++E   ++++ + ++GL          
Sbjct: 661 DLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSM 720

Query: 191 ---------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                                      D+ TY  LI  + K G +  A  L   ++  G 
Sbjct: 721 ISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGI 780

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    +  ++ G+  +GQ ++A     EM  K   P+  +Y  LI    R G   EA  
Sbjct: 781 VPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFT 840

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
              EM + GL P    +D++ +G
Sbjct: 841 LHDEMLDRGLVPDDVTYDILING 863



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 138/349 (39%), Gaps = 34/349 (9%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I   K ++  +  +  + ++  + +   ++NA++ FN     +    V   N LL AL  
Sbjct: 178 INCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVR 237

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +      L  +M+ +G   D  T  ++V A    G++ EA+E+ +E  ++G       
Sbjct: 238 RNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGA 297

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +++Q +          +++ +M ++G+V    TF S+I      G +   + +   + 
Sbjct: 298 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 357

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++     L+      G +D A  L + + EDG  P    Y+ +I+G    G  +
Sbjct: 358 NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIE 417

Query: 245 DAFCFFSEMKIKGHPP----------------------------------NRPVYTMLIT 270
            A   +++MK+ G PP                                  N   Y ++++
Sbjct: 418 KASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMS 477

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +GG+  EA + L  M   G+ P    ++ +  G    G  D+A  +
Sbjct: 478 WLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSV 526



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           LI    R  F  D R +  L+NA+  + ++  A +    M  +   P V   ++L+  L+
Sbjct: 177 LINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 236

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +   + + NKM+ +G   D  T + ++    K G VE   E +    + G+  D  
Sbjct: 237 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAG 296

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y I+I AV K    +    LL  + E G  P  + +  +I     +G   +A     EM
Sbjct: 297 AYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEM 356

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G P N  V T L+      G    A N   ++TE GL P    + ++ +G  N G  
Sbjct: 357 INCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 416

Query: 314 DLAEKI 319
           + A ++
Sbjct: 417 EKASEL 422



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           KT + M+   L +     S +I+ F K   +++A ++F +          ++YNS++   
Sbjct: 665 KTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF 724

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            ++     A    ++MI      D  TY  L++     G++  A +   EM  KG  P +
Sbjct: 725 RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDI 784

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +LV GL N G LE+A++++ +M ++     +  +N+LI    + G ++    ++  
Sbjct: 785 ITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDE 844

Query: 183 VCKLGLCADVSTYKILI 199
           +   GL  D  TY ILI
Sbjct: 845 MLDRGLVPDDVTYDILI 861


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 129/270 (47%), Gaps = 3/270 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YNSLL +LC+ K  H A+A+   M+  + FVPD  +Y+IL++ +C   ++  A++  ++M
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
            D    P V   +  + GL+  G +  A+ +  +M+  G   D+ T+++LI     + + 
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +   E++ ++   G   +  TY  L+  + K    DEA  L   +VE G  P    Y  +
Sbjct: 569 DQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTL 628

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           + G    G+ + A   F EM  KGH P+   Y  L+    R G+  EA      M     
Sbjct: 629 LYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQC 688

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +   +++ DGL    + D A  +E+ E
Sbjct: 689 KPDTVSHNIMIDGLSKAKRLDDA--VEVFE 716



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 38/352 (10%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           +LS S     ++I    + G +D A E   +    N Q      +S++  LC+      A
Sbjct: 334 SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSA 393

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------------------ 113
            +L+  MI++G+ PD  T+++L+N  C + K++EAQEFLQ M                  
Sbjct: 394 LSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLL 453

Query: 114 --------------------SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
                               S++ F P V    +L+ G      L  A+++  +MI    
Sbjct: 454 NSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNC 513

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
           V ++ T+N+ +  + + G +     +Y  +   G   DV TY  LI   S A   D+A  
Sbjct: 514 VPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHE 573

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L   ++  G +P    Y  ++ G+ +  + D+A   F +M  +G  P+R  YT L+    
Sbjct: 574 LFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFC 633

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325
             G+  +A     EM   G  P    ++ +  G    GK   A+++  + VS
Sbjct: 634 NVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVS 685



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 134/295 (45%), Gaps = 4/295 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S++I+ F K   +  A +++ +    NC   V  YN+ L  L        A  +   M
Sbjct: 484 SYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEM 543

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  TY+ L++ +  + K  +A E  + M  +G  P     + L+ GL      
Sbjct: 544 VAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKP 603

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  KM+++G   D  T+ +L+   C  G++E  VE++  +   G   DV  Y  L
Sbjct: 604 DEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCL 663

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM-KIKG 257
           +    +AG   EA +L   +V    KP    +  +I G+ +  + DDA   F  M +  G
Sbjct: 664 LKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 723

Query: 258 HPPNRPVYTMLI-TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             P+   Y  LI  +CG   R  EA     E+  + L+P    F+++ + +K CG
Sbjct: 724 CSPDLVTYNSLIFGLCGE-QRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAIK-CG 776



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 7/311 (2%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T+  +I+     G    A+  F    A N +  V  YN LL  L   +    A  +  +
Sbjct: 98  ETVGAVIKHLRDGG---EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEK 154

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+ +G VP+  TYA+LV + C      EA  F  EM DKGF P       + + L   G 
Sbjct: 155 MVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGK 214

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
                ++  + +++   +++    +L+       +     +++ ++ K G   D + Y  
Sbjct: 215 EGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSY 274

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           ++ A  K   +DEAF+L   +  +   P  ++ +   + G+ + G+ + AF     M+ +
Sbjct: 275 MVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQ-E 333

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               ++PVY MLI +    GR  +A    +E+    + P S     V   L   G+ D A
Sbjct: 334 SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSA 393

Query: 317 EKIELLEVSLR 327
             + LLE  ++
Sbjct: 394 --LSLLETMIK 402



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 116/268 (43%), Gaps = 4/268 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           + + L  LC+      A+   R M ++     +  Y +L+     SG++ +A+E   E++
Sbjct: 308 WTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIA 366

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +   P       ++Q L  AG ++SA  ++  MIK+G+  D+ T + LI  +CK+ +++
Sbjct: 367 GRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQ 426

Query: 175 FCVEMYYSVCK--LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYA 231
              E    + +      +   +Y  L+ ++ KA  + +AF +   +V E    P    Y+
Sbjct: 427 EAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYS 486

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G  +  +   A   + +M      PN   Y   +    R GR  +A     EM   
Sbjct: 487 ILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAA 546

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G +P    +  +  G     KHD A ++
Sbjct: 547 GCSPDVITYSTLIHGFSLARKHDQAHEL 574


>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
 gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 16/327 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +S++  T + +I+ F K G +  A E++++      +   L+Y +++    +   
Sbjct: 224 MRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGD 283

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   + +M+ +G   D   Y ++++  C +GK++EA E +++M      P +     
Sbjct: 284 SDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTT 343

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-----VEFCVEMYYS 182
           ++     +G +++A  M +K+I++GF  D+   +++I+ I K+G+     V FC+E    
Sbjct: 344 MMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEK--- 400

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
                  A+   Y +LI A+ K G   E  RL   + E G  P   +Y   I G+ ++G 
Sbjct: 401 -------ANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGN 453

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
             DAF   + M  +G   +   YT LI      G  VEA     EM   G++P S  FDL
Sbjct: 454 LVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDL 513

Query: 303 VTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +    +  G    A  + LL++  R +
Sbjct: 514 LIRAYEKEGNMAAASDL-LLDMQRRGL 539



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 5/277 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S  I+ F K G +  A++ F+          V+ +  L+   C+      A +L + M
Sbjct: 165 TYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEM 224

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R     +  TY  L++ +C  G+M+ A+E    M +    P       ++ G    G  
Sbjct: 225 RRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDS 284

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A + + KM+ QG  LD+  +  +I  +C +G+++   E+   + K  L  D+  +  +
Sbjct: 285 DNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTM 344

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A  K+G +  A  + H L+E G +P     + +I G+ + GQ  +A  +F   K    
Sbjct: 345 MNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIEK---- 400

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             N  +YT+LI    + G F+E      +++E GL P
Sbjct: 401 -ANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVP 436



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 123/276 (44%), Gaps = 1/276 (0%)

Query: 37  VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96
           +E       F C+  ++ +NSL     ++K+    +  +  M+ K   P+  TY+  ++ 
Sbjct: 114 LESLRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVML-KCCSPNVVTYSTWIDT 172

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +C SG+++ A +    M     +P V     L+ G   AG LE A  +  +M +    L+
Sbjct: 173 FCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLN 232

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           + T+ +LI+  CK GE++   EMY  + +  +  +   Y  +I    + G  D A + L 
Sbjct: 233 VVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLA 292

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            ++  G +   + Y  II G+   G+  +A     +M+     P+  ++T ++    + G
Sbjct: 293 KMLNQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSG 352

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           R   A N   ++ E G  P       + DG+   G+
Sbjct: 353 RMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQ 388



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 126/271 (46%), Gaps = 6/271 (2%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM-IRKGFV--P 85
           K G V  A ++ +    F C+  V+ YNSL+   C       A  ++  +    GF+  P
Sbjct: 68  KLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKP 127

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D  ++  L N +     + E   ++  M  K  +P V      +     +G L+ A +  
Sbjct: 128 DIVSFNSLFNGFSKMKMLDEVFVYMGVML-KCCSPNVVTYSTWIDTFCKSGELQLALKSF 186

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           + M +     ++ TF  LI+  CK+G++E  V +Y  + ++ +  +V TY  LI    K 
Sbjct: 187 HSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKK 246

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +  A  +   +VED  +P   +Y  II G F+RG  D+A  F ++M  +G   +   Y
Sbjct: 247 GEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAY 306

Query: 266 TMLIT-MCGRGGRFVEAANYLVEMTEMGLTP 295
            ++I+ +CG  G+  EA   + +M +  L P
Sbjct: 307 GVIISGLCG-NGKLKEATEIVEDMEKSDLVP 336



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 4/244 (1%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           ++ +G+ P + ++  +V+  C  G+++ A++ +  M   G  P V   + L+ G    G 
Sbjct: 47  LVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGD 106

Query: 138 LESAKQMVNKM-IKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
           + SA  ++  +    GF+   D+ +FNSL     K   ++  V +Y  V       +V T
Sbjct: 107 IRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDE-VFVYMGVMLKCCSPNVVT 165

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y   I    K+G +  A +  H++  D   P    +  +I G  + G  + A   + EM+
Sbjct: 166 YSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMR 225

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
                 N   YT LI    + G    A      M E  + P S  +  + DG    G  D
Sbjct: 226 RVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSD 285

Query: 315 LAEK 318
            A K
Sbjct: 286 NAMK 289



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            LS +I+   K+G +  A+  F    A +     ++Y  L+ ALC+   F     L  ++
Sbjct: 375 ALSTMIDGIAKNGQLHEAIVYFCIEKAND-----VMYTVLIDALCKEGDFIEVERLFSKI 429

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VPDK  Y   +   C  G + +A +    M  +G    +     L+ GL + G +
Sbjct: 430 SEAGLVPDKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLM 489

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
             A+Q+ ++M+  G   D   F+ LI    K G +    ++   + + GL   VS
Sbjct: 490 VEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGLVTAVS 544



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +L Y +L++ L    L   A  +   M+  G  PD   + +L+ A+   G M  A + L 
Sbjct: 473 LLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVFDLLIRAYEKEGNMAAASDLLL 532

Query: 112 EMSDKGFNPPVRGRD 126
           +M  +G    V   D
Sbjct: 533 DMQRRGLVTAVSDAD 547


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 137/304 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LSV   TL  +I   G  G  + A  +F +      Q     YN+LL    +  L   A 
Sbjct: 302 LSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAE 361

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++  M R G +P+++TY++L++A+ ++ +   A+  L+EM      P       ++   
Sbjct: 362 FVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASY 421

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G  +   Q++ +M   G   D   +N LI+T  K   ++  +  +  +   G+  D 
Sbjct: 422 RDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDT 481

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  L+    KAG  D A  L   ++E G+ P  + +  +I     + ++DD     + 
Sbjct: 482 ITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTN 541

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ +G  PN   YT LI + G+ GRF +A   L +M   GL P S  ++ + +     G 
Sbjct: 542 MRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGL 601

Query: 313 HDLA 316
            D A
Sbjct: 602 SDQA 605



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 126/287 (43%), Gaps = 5/287 (1%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           QT SL+I+ +G     ++A  V  +  A N Q    +++ +L +  +   +   + ++R 
Sbjct: 377 QTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLRE 436

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M   G  PD+  Y +L++ +     +  A      M  +G  P     + LV     AG 
Sbjct: 437 MEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGK 496

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A+++  +M+++G++    TFN +I +       +    +  ++   GL  +  TY  
Sbjct: 497 HDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTT 556

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K+G  D+A   L ++   G KP  ++Y  ++    +RG  D A   F  M+  G
Sbjct: 557 LIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDG 616

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             P+      LI   G+  R VEA   L  M E  L P     D+VT
Sbjct: 617 LKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKP-----DVVT 658



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 125/301 (41%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+  +    S I+  +   G      +V  +      +   + YN L+    +   
Sbjct: 402 MEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNC 461

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A A   RM+ +G  PD  T+  LV+  C +GK   A+E  +EM +KG+ P     ++
Sbjct: 462 LDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNI 521

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++    +    +  K ++  M  QG + +  T+ +LI+   KSG  +  +E    +   G
Sbjct: 522 MINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAG 581

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L    + Y  L+ A ++ G+ D+A      + +DG KP       +I    +  +  +AF
Sbjct: 582 LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAF 641

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                MK     P+   YT L+       +F +  +   EM   G TP  +   ++   L
Sbjct: 642 VVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEMILSGCTPDRKARAMLRSAL 701

Query: 308 K 308
           K
Sbjct: 702 K 702



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 121/267 (45%), Gaps = 7/267 (2%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C    LLY+ L+ AL + +  + A+ L ++   +   P   TY  L++A   +  + +A 
Sbjct: 165 CFSYELLYSILIHALGQSEKLYEAFLLSQK---QNLTP--LTYNALISACARNNDIEKAL 219

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA--KQMVNKMIKQGFVLDLETFNSLIE 165
             +  M + G+   +    L+++ L+      S+  +++  ++ +    +D++ +N +I 
Sbjct: 220 NLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIV 279

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
              K+G+++  +E    V   GL    +T   +I  +   G  +EA  +   + ++G +P
Sbjct: 280 GFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQP 339

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +++G  + G   DA    SEM+  G  PN   Y++LI   G   R+  A   L
Sbjct: 340 RTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVL 399

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGK 312
            EM    + P +  F  +    ++ G+
Sbjct: 400 KEMEASNVQPNAYVFSRILASYRDKGE 426



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 10/256 (3%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           + R + R     D + +  ++  +  +G + +A EFL  +   G +        ++ GL 
Sbjct: 258 IYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLG 317

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG---EVEFCV-EMYYSVCKLGLC 189
           N G  E A+ +  +M   G       +N+L+    K+G   + EF V EM  S    G+ 
Sbjct: 318 NCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERS----GVL 373

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  TY +LI A   A   + A  +L  +     +P   +++ I+     +G++   F  
Sbjct: 374 PNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQV 433

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
             EM+  G  P+R  Y +LI   G+      A      M   G+ P +  ++ + D    
Sbjct: 434 LREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCK 493

Query: 310 CGKHDLAEKI--ELLE 323
            GKHD AE++  E++E
Sbjct: 494 AGKHDRAEELFEEMME 509



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 127/280 (45%), Gaps = 10/280 (3%)

Query: 54  LYNSLLFALC-EVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           L++SLL +LC        AYA++  + +       +  Y+IL++A   S K+ EA  FL 
Sbjct: 134 LWHSLLKSLCTSSSSIPLAYAVVSWLQKHNLCFSYELLYSILIHALGQSEKLYEA--FL- 190

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            +S K    P+   + L+        +E A  ++ +M + G+  DL  ++ +I ++ K+ 
Sbjct: 191 -LSQKQNLTPL-TYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNN 248

Query: 172 EVEFCV--EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
                +  ++Y  + +  L  DV  +  +I   +KAG +D+A   L  +   G     + 
Sbjct: 249 RANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTAT 308

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
              +I G+   G+ ++A   F EM+  G  P    Y  L+    + G   +A   + EM 
Sbjct: 309 LVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEME 368

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
             G+ P  + + L+ D   N  + + A +I L E+   +V
Sbjct: 369 RSGVLPNEQTYSLLIDAYGNAERWESA-RIVLKEMEASNV 407


>gi|297853270|ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297340358|gb|EFH70775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 477

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 135/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M + I+ M       +  T +L+I   G+ GL  + VE F K   FN +     YN++L 
Sbjct: 171 MCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILH 230

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           +L  VK +     +  +M+  GF PD  TY I++ A    GK       L EM   GF+P
Sbjct: 231 SLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSP 290

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++L+  L       +A  ++  M + G    +  F +L++ + ++G++E C    
Sbjct: 291 DLYTYNILLHHLATGNKPLAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFM 350

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K+G   DV  Y ++I      G +++A  +   + E G  P    Y  +I+G    
Sbjct: 351 DEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMA 410

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           G+F +A     EM+ +G  PN  VY+ L+      G+ +EA   + +M E G
Sbjct: 411 GKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKG 462



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 114/268 (42%), Gaps = 4/268 (1%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N +     Y+ L+    E   +     LI  MI+ G+     T+ +L+     +G  R+ 
Sbjct: 147 NFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGLARDV 206

Query: 107 QEFLQEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
            E  Q +  K FN  P     + ++  LL     +    +  +M++ GF  D+ T+N ++
Sbjct: 207 VE--QFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYNIVM 264

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
               + G+ +    +   + K G   D+ TY IL+  ++       A  LL ++ E G +
Sbjct: 265 FANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREVGVE 324

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    +  ++ G+ R G+ +    F  EM   G  P+   YT++IT    GG   +A   
Sbjct: 325 PGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEM 384

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             EMTE G  P    ++ +  G    GK
Sbjct: 385 FKEMTEKGQLPNVFTYNSMIRGFCMAGK 412



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/243 (21%), Positives = 106/243 (43%), Gaps = 6/243 (2%)

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           ++ F      Y +L+  +   G+ +     + EM   G+       +LL+     AG   
Sbjct: 145 QENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTACTFNLLICTCGEAGL-- 202

Query: 140 SAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196
            A+ +V + IK     +     ++N+++ ++    + +    +Y  + + G   DV TY 
Sbjct: 203 -ARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQMLEDGFSPDVLTYN 261

Query: 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           I++ A  + G  D  +RLL  +V+DG  P    Y  ++  +    +   A    + M+  
Sbjct: 262 IVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKPLAALNLLTHMREV 321

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           G  P    +T L+    R G+      ++ EM ++G TP   C+ ++  G  + G+ + A
Sbjct: 322 GVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKA 381

Query: 317 EKI 319
           E++
Sbjct: 382 EEM 384



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 63/138 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +++   + G ++      ++     C   V+ Y  ++           A  + + M 
Sbjct: 330 FTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMT 389

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
            KG +P+  TY  ++  +C +GK +EA   L+EM  +G NP       LV  L NAG + 
Sbjct: 390 EKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGCNPNFVVYSTLVNNLRNAGKVL 449

Query: 140 SAKQMVNKMIKQGFVLDL 157
            A ++V  M+++G  + L
Sbjct: 450 EAHEIVKDMVEKGHYVHL 467


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + I++ F K G +D+A+ V+ +   F     V+ Y SL+   C+      A      M
Sbjct: 571 TYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEM 630

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D   Y+ L++ +C    M  AQ+   E+ + G +P     + ++ G  +   +
Sbjct: 631 REKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNM 690

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A     KMI      DL T+ +LI+ + K G + F  ++Y  +   G+  D+ T+ +L
Sbjct: 691 EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVL 750

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +   G ++ A ++L  +      P   +Y  +I G FR G   +AF    EM  +G 
Sbjct: 751 VNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGL 810

Query: 259 PPNRPVYTMLITMCGRGGR 277
            P+   Y +LI    +G R
Sbjct: 811 VPDDVTYDILINGKFKGDR 829



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 136/291 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G +D A  VF+   A + +  V+ Y+ L+    +      A  L  +M+     P   
Sbjct: 476 RKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDF 535

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           T+  ++N  C  G+M EA++ L+   ++GF P     + +V G +  G ++SA  +  +M
Sbjct: 536 TFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREM 595

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            + G   ++ T+ SLI   CKS  ++  ++    + + GL  DV+ Y  LI    K   +
Sbjct: 596 CEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDM 655

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   L+E G  P   +Y  +I G       + A  ++ +M     P +   YT L
Sbjct: 656 ESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTL 715

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I    + GR V A++  +EM   G+ P    F ++ +GL N G+ + A KI
Sbjct: 716 IDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKI 766



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/312 (27%), Positives = 136/312 (43%), Gaps = 7/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++IE     G ++ A E++ +         V   NSLL    +  L+  A  L    
Sbjct: 362 TYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEA 421

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G V +  TY I+++  C  GKM EA   L  M ++G  P V   + ++ G    G +
Sbjct: 422 VDCG-VANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNM 480

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + + M+ +    ++ T++ LI+   K G+ E  ++++  +  L +     T+  +
Sbjct: 481 DMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTI 540

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G + EA   L N +E+G  P    Y  I+ G  + G  D A   + EM   G 
Sbjct: 541 INGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGV 600

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT LI    +  R   A     EM E GL      +  + DG   C + D+   
Sbjct: 601 SPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGF--CKRRDMESA 658

Query: 319 ----IELLEVSL 326
                ELLEV L
Sbjct: 659 QDLFFELLEVGL 670



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 142/323 (43%), Gaps = 35/323 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I+   K G  + A+++F++  + N       +N+++  LC+V     A   ++  
Sbjct: 501 TYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNF 560

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +GF+P   TY  +V+ +   G +  A    +EM + G +P V     L+ G   +  +
Sbjct: 561 LEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRI 620

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-------- 190
           + A +  ++M ++G  LD+  +++LI+  CK  ++E   ++++ + ++GL          
Sbjct: 621 DLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSM 680

Query: 191 ---------------------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
                                      D+ TY  LI  + K G +  A  L   ++  G 
Sbjct: 681 ISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGI 740

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
            P    +  ++ G+  +GQ ++A     EM  K   P+  +Y  LI    R G   EA  
Sbjct: 741 VPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFT 800

Query: 284 YLVEMTEMGLTPISRCFDLVTDG 306
              EM + GL P    +D++ +G
Sbjct: 801 LHDEMLDRGLVPDDVTYDILING 823



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 138/349 (39%), Gaps = 34/349 (9%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I   K ++  +  +  + ++  + +   ++NA++ FN     +    V   N LL AL  
Sbjct: 138 INCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVR 197

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
             +      L  +M+ +G   D  T  ++V A    G++ EA+E+ +E  ++G       
Sbjct: 198 RNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGA 257

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +++Q +          +++ +M ++G+V    TF S+I      G +   + +   + 
Sbjct: 258 YSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMI 317

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G   ++     L+      G +D A  L + + EDG  P    Y+ +I+G    G  +
Sbjct: 318 NCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIE 377

Query: 245 DAFCFFSEMKIKGHPP----------------------------------NRPVYTMLIT 270
            A   +++MK+ G PP                                  N   Y ++++
Sbjct: 378 KASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMS 437

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              +GG+  EA + L  M   G+ P    ++ +  G    G  D+A  +
Sbjct: 438 WLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSV 486



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 103/246 (41%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           LI    R  F  D R +  L+NA+  + ++  A +    M  +   P V   ++L+  L+
Sbjct: 137 LINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALV 196

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +   + + NKM+ +G   D  T + ++    K G VE   E +    + G+  D  
Sbjct: 197 RRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAG 256

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            Y I+I AV K    +    LL  + E G  P  + +  +I     +G   +A     EM
Sbjct: 257 AYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEM 316

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G P N  V T L+      G    A N   ++TE GL P    + ++ +G  N G  
Sbjct: 317 INCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNI 376

Query: 314 DLAEKI 319
           + A ++
Sbjct: 377 EKASEL 382



 Score = 74.3 bits (181), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           KT + M+   L +     S +I+ F K   +++A ++F +          ++YNS++   
Sbjct: 625 KTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGF 684

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            ++     A    ++MI      D  TY  L++     G++  A +   EM  KG  P +
Sbjct: 685 RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDI 744

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +LV GL N G LE+A++++ +M ++     +  +N+LI    + G ++    ++  
Sbjct: 745 ITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDE 804

Query: 183 VCKLGLCADVSTYKILI 199
           +   GL  D  TY ILI
Sbjct: 805 MLDRGLVPDDVTYDILI 821


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 132/274 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + S +I+   K G  D A   + +         V++Y+S++ ALC+ +    A  +  RM
Sbjct: 200 SYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRM 259

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  P+  TY  LV+ +CSSG++ EA +FL++M   G  P V      +  L   G  
Sbjct: 260 VKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRC 319

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++ + M+K+G   D+ T++SL+      G +     ++  + +  +  D   +  L
Sbjct: 320 TEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTL 379

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K G +DEA  +   + + G KP    Y+ +I G  +  + ++A   F EM   G 
Sbjct: 380 IYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGV 439

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            PN   Y +++    R GR   A  + V++ + G
Sbjct: 440 SPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSG 473



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 128/271 (47%)

Query: 48  CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
           C   V+ Y++++  L +      AYA  R M+ +  +P+   Y+ ++ A C    M +A 
Sbjct: 194 CLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAM 253

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
           E    M   G  P       LV G  ++G L  A + + KM   G   ++ T++S ++ +
Sbjct: 254 EVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYL 313

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
           CK+G      +++ S+ K GL  D++TY  L+   +  G + E   L   +V+   +P  
Sbjct: 314 CKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDH 373

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
            ++  +I    ++G+ D+A   FS+M+ +G  PN   Y+ LI    +  R   A     E
Sbjct: 374 YVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQE 433

Query: 288 MTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           M   G++P    ++++  GL   G+   A++
Sbjct: 434 MVSNGVSPNFITYNIMLQGLFRTGRTATAKE 464



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 118/267 (44%), Gaps = 3/267 (1%)

Query: 53  LLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +++N LL  LC  K    A  ++ R M     VP+  ++ I++   C   + +EA E L 
Sbjct: 126 IIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLH 185

Query: 112 EMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            M+D G    P V     ++ GLL  G  + A     +M+ +  + ++  ++S+I  +CK
Sbjct: 186 MMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCK 245

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
              ++  +E++  + K G+  +  TY  L+     +G + EA + L  +  +G +P    
Sbjct: 246 GQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVT 305

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y+  +  + + G+  +A   F  M  +G  P+   Y+ L+      G  VE       M 
Sbjct: 306 YSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMV 365

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +  + P    F+ +       GK D A
Sbjct: 366 QSDMQPDHYVFNTLIYASAKQGKVDEA 392



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 120/277 (43%), Gaps = 3/277 (1%)

Query: 33  VDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF--VPDKRT 89
            D+A++ V    T  +C   V  +  +L  LC       A  L+  M   G   +P+  +
Sbjct: 141 TDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVS 200

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y+ +++     G   +A    +EM D+   P V     ++  L     ++ A ++ ++M+
Sbjct: 201 YSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMV 260

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           K G   +  T+ SL+   C SG++   ++    +C  G+  +V TY   +  + K G   
Sbjct: 261 KNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCT 320

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           EA ++  ++V+ G KP  + Y+ ++ G    G   +    F  M      P+  V+  LI
Sbjct: 321 EARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLI 380

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               + G+  EA     +M + GL P    +  + +G
Sbjct: 381 YASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLING 417



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T + ++  F   G +  A++   K  +   +  V+ Y+S +  LC+      A 
Sbjct: 264 VTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEAR 323

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+++G  PD  TY+ L++ +   G + E       M      P     + L+   
Sbjct: 324 KIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYAS 383

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G ++ A  + +KM +QG   +  T+++LI   CK   +E  + ++  +   G+  + 
Sbjct: 384 AKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNF 443

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
            TY I++  + + G    A      +++ G K
Sbjct: 444 ITYNIMLQGLFRTGRTATAKEFYVQIIKSGKK 475



 Score = 61.6 bits (148), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 114/271 (42%), Gaps = 8/271 (2%)

Query: 57  SLLFALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           SL  AL +V   + A A+ R  RM R G     P   TY IL+   CS+G++      L 
Sbjct: 55  SLNGALADVARDNPAAAVSRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALG 114

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNK-MIKQGFVLDLETFNSLIETICKS 170
            +  KGF       + L++GL      + A  +V + M +   V ++ +   +++ +C  
Sbjct: 115 HVVKKGFRVEPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHE 174

Query: 171 GEVEFCVEMYYSVCKLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
              +  +E+ + +   G     +V +Y  +I  + K G  D+A+     +++    P   
Sbjct: 175 NRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVV 234

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y+ II  + +    D A      M   G  PN   YT L+      G+  EA  +L +M
Sbjct: 235 IYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM 294

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G+ P    +    D L   G+   A KI
Sbjct: 295 CSNGVEPNVVTYSSFMDYLCKNGRCTEARKI 325


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 126/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++   +  + L   M 
Sbjct: 139 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   K+ +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK+G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  + EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVP 414



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 116/256 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G ++    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  ++  L++  C  G++  A E  ++M  +  +P +   
Sbjct: 220 SKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++N+M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLMKEMQRDGYVPS 415



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++C  G++R AQ     ++  G  P V   + L+ G +  G L 
Sbjct: 129 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  ++  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ + G    A    +EM +KG  
Sbjct: 249 DGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 114/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ + CK GE+     ++ ++ K GL   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G ++E FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C   DL +  +L+ E+
Sbjct: 245 TTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKNGDLKQAQDLINEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY+ ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +M +  L+P +  ++ +   L    K D A+++ +LE+  R +
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL-ILEMLDRGI 475



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P   VY  LI       ++ +A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID--SHCKEGRV 495

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 496 IESEKLFDLMVR 507



 Score =  110 bits (276), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 119/237 (50%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +  +M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P     + L+ 
Sbjct: 393 AMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIH 452

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L      + AK+++ +M+ +G  LD   FNS+I++ CK G V    +++  + ++G+  
Sbjct: 453 SLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKP 512

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  +  + +DA   F
Sbjct: 513 DIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLF 572

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            EM+  G  P+   Y +++    +  R   A    V +TE G       ++++  GL
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGL 629



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV               YNS++   C       A   +++M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   +   F+ LI    K G+V+  + ++  + + GL  D  TY  +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A R    ++++   P   +Y  +I  +    ++D A     EM  +G 
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  +I    + GR +E+      M  +G+ P    +  + DG    GK D A K
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 319 I 319
           +
Sbjct: 536 L 536



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + + G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L   L  +G  P    Y+ + + +  +G  ++    F  M+  G   N 
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDE 752



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T++S+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+ +LC    
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   D   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+N+LI   CK   +E  + ++  +   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    D+A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +    ++  GL P  R + L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 130/325 (40%), Gaps = 35/325 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G    A+    K  +   +  V+ YNSL+  LC+      A  +   
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P+  TY  L+  + + G + E    L  M   G +P      +L+      G 
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----------------------- 174
           ++ A  + +KM +QG   D  T+ ++I  +CKSG VE                       
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 175 ----FCV--------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                C+        E+   +   G+C D   +  +I +  K G + E+ +L   +V  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            KP    Y+ +I G    G+ D+A    + M   G  P+   Y  LI    +  R  +A 
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G++P    ++++  GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGL 594



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY IL+ + C +G++      L  +  
Sbjct: 60  ALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIK 119

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V   ++L++GL +    +
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQ 179

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+ ++ ++I    K G+++     Y+ +   G+  +V TY  
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    + GR  EA      MT+ GL P    +  +  G    G   L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA--LVE 357

Query: 318 KIELLEVSLRS 328
              LL++ +R+
Sbjct: 358 MHGLLDLMVRN 368



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T ++I++   +      A E++   T    Q  +  YN +L  LC+  L   A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + +       + RT+ I++ A    G+  EA++    +S  G  P VR   L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +  G LE    +   M + G   +    NS++  + + G++
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 39.3 bits (90), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  ++ TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTY 94

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI +   AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN   Y +L+       R  EA   L  M + G
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 132/273 (48%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+LYN+++    +      AYA    M  +G +PD  TY+ ++ A C +  M +A
Sbjct: 187 DCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKA 246

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G L  A   +  M   G   D+ T N L++ 
Sbjct: 247 MEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDY 306

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+       +++ S+ K GL  D++TY  L+   +  G + E   LL  +V +G +P 
Sbjct: 307 LCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPN 366

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             ++  +I    ++ + D+A   FS+M+ +G  PN   Y  +I +  + GR  +A   L 
Sbjct: 367 HHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLK 426

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           +M   GLTP    +  +  G   C K + AE++
Sbjct: 427 QMINEGLTPDIIVYTPLIHGFCTCDKWEKAEEL 459



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 43/278 (15%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY++L+   C +G++      L  +  
Sbjct: 53  ALDDVARHSPAAAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIK 112

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V    +L++GL +    +
Sbjct: 113 KGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQ 172

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+  +N++I    K G+ +     Y+ +   G+  DV TY  
Sbjct: 173 EALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSS 232

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L+ +V++G  P    Y  I+ G    GQ  +A  F   M   G
Sbjct: 233 IIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDG 292

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             P+     +L+    +  R  EA      MT+ GL P
Sbjct: 293 VEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKCGLKP 330



 Score = 54.3 bits (129), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 76/182 (41%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G +  A+       +   +  V+  N L+  LC+ +    A  +   
Sbjct: 263 RTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNS 322

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M + G  PD  TY  L+  + + G + E  + L  M   G  P     ++L+        
Sbjct: 323 MTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEK 382

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A  + +KM +QG   +   + ++I+ +CK G V   V     +   GL  D+  Y  
Sbjct: 383 VDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVYTP 442

Query: 198 LI 199
           LI
Sbjct: 443 LI 444



 Score = 47.8 bits (112), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 54/110 (49%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    +++I  + K   VD A+ VF+K          + Y +++ 
Sbjct: 351 MHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVID 410

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            LC++   + A   +++MI +G  PD   Y  L++ +C+  K  +A+E +
Sbjct: 411 VLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELI 460



 Score = 39.7 bits (91), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  ++ + +       V  Y  + + G   +  ++ TY
Sbjct: 29  EDARHVFDELLRRGKGATIYGLNRALDDVARHSPAA-AVSRYNRMARAGADEVTPNLYTY 87

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            +LI    +AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 88  SVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLCRMT 147

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN    T+L+       R  EA   L  M + G
Sbjct: 148 QLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPDDG 185


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + + G++ +A  VF       C +    Y +LL  L    +   A A+   M      PD
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              YA +V+  C +G+  EA+  L+E    GF P +   + L+ G  NAG +E A ++  
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M       ++ T+  LI  +CKSG+VE  + ++  + + GL  +V TY  LI      G
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +  AFRLLH +  +G  P    ++ +I  + +R + ++A  F   +  KG   N  VYT
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            LI    + G+   A   + +M   G  P +  +  + DGL  C +  L++   +LE
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL--CRQKKLSQATLMLE 411



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ +   G +++A++VF       C   V  Y  L+  LC+      A  L  RM+  G
Sbjct: 218 LIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG 277

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+   C+ G ++ A   L  M   G  P      +L+  L     +E A+
Sbjct: 278 LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQ 337

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             +  ++K+G  ++   + SLI+ +CK+G+++   E+   +   G   D  +Y  LI  +
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL 397

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   + +A  +L +++E G +  P  Y  II  + R    +     F +M   G  P+ 
Sbjct: 398 CRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDI 457

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             YT+ +      GR  +A + +V+M + G+ P    ++ +  G  N G
Sbjct: 458 VTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 134/277 (48%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G+V  A+ VF    A +C     +Y +++  LCE      A  L+   +  GF P+   Y
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +C++G+M  A +  + M     +P VR    L+ GL  +G +E A  + ++M++
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   ++ T+ +LI+  C  G ++    + + +   GL  +  T+ +LI A+ K   ++E
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A   L +LV+ G K    +Y  +I G+ + G+ D A     +M  +G  P+   Y+ LI 
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              R  +  +A   L +M E G+      + ++ D L
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 138/316 (43%), Gaps = 12/316 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L  +  T S++I+   K   V+ A            +   ++Y SL+  
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L+++MI +GFVPD  +Y+ L++  C   K+ +A   L++M +KG    
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++  L+     E  K++ +KMI  G   D+ T+   + + C+ G +E    M  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G+  ++ TY  LI   +  G++ +AF     +V  G KP    Y  +++ + ++ 
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKS 541

Query: 242 QFDDAF------------CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
             D++                 ++  +  P    +Y+  I    R  R  EA ++ + M 
Sbjct: 542 SSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQ 601

Query: 290 EMGLTPISRCFDLVTD 305
              LTP    +  + D
Sbjct: 602 NANLTPSEDVYTSIID 617



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 132/293 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M     S + +T + +I    K G V+ A+ +F++      +  V+ Y +L+   
Sbjct: 233 KVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQ 292

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A+ L+  M   G VP+  T+++L++A C   K+ EAQ FL  +  KG     
Sbjct: 293 CNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE 352

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL   G +++A +++ KMI +GFV D  +++SLI+ +C+  ++     M   
Sbjct: 353 VVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLED 412

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+ A   TY I+I  + +    +   ++   ++  G  P    Y   ++     G+
Sbjct: 413 MMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGR 472

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +DA     +M  +G  PN   Y  LI      G   +A +    M   G  P
Sbjct: 473 MEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKP 525



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S +   C   +   A  +   M  +G +    TY  L++    +G +REA      M 
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR 169

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P       +V GL  AG  E A+ ++ + +  GF  ++  +N+LI+  C +GE+E
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEME 229

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +       +V TY  LI  + K+G ++ A  L   +VE G +P    Y  +I
Sbjct: 230 HALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G    G    AF     M+  G  PN   +++LI    +  +  EA  +L  + + G+ 
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK 349

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
                +  + DGL   GK D A+++
Sbjct: 350 VNEVVYTSLIDGLCKTGKIDAADEL 374



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 96/261 (36%), Gaps = 39/261 (14%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL AL   ++F    +L  RM  +      RTY  L+NA+C                 
Sbjct: 45  NTLLMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCL---------------- 84

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
                              AG + +AKQ +  ++  G   D   + S +   C++G +  
Sbjct: 85  -------------------AGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTH 125

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  +   G      TY  L+  +  AGM+ EA  +   +  D   P   +YA ++ 
Sbjct: 126 ACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVH 185

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+   G+ ++A     E    G  PN  VY  LI      G    A      M     +P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 296 ISRCFDLVTDGLKNCGKHDLA 316
             R +  +  GL   GK + A
Sbjct: 246 NVRTYTELIHGLCKSGKVERA 266



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/262 (17%), Positives = 100/262 (38%), Gaps = 47/262 (17%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++ +  + + G +++A  +  +         ++ YN+L+     + L   A++    M
Sbjct: 459 TYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVM 518

Query: 79  IRKGFVPDKRTYAIL-------------VNAW---------------------------- 97
           + KG+ P++ +Y +L             V+ W                            
Sbjct: 519 VGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYS 578

Query: 98  ------CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                 C   ++ EA+ F   M +    P       ++        L  A  +++ M K 
Sbjct: 579 CFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKS 638

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
           G++  LE++  +I ++C+ G      E++  +       D   +KILI  + + G + E 
Sbjct: 639 GYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEF 698

Query: 212 FRLLHNLVEDGHKPFPSLYAPI 233
             LL  + E G++P  ++ A I
Sbjct: 699 SSLLSVMKEHGYQPSNTINAMI 720



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 6/126 (4%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y S++   C +K+   A  L+  M + G++P   +Y I++++ C  G  R A+E   ++
Sbjct: 611 VYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDL 670

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K  N       +L+ GLL  G +     +++ M + G+     T N++I     +GE+
Sbjct: 671 LLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPS-NTINAMI-----TGEI 724

Query: 174 EFCVEM 179
               E+
Sbjct: 725 TVTNEV 730


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 117/256 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +  +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYMPS 415



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 130/310 (41%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++     P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++          Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ +  K GE+     ++ ++ K  L   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+     ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSV 416


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 129/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M 
Sbjct: 134 FNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMR 193

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C    M +A E   EM  KG  P       L+ G    G ++
Sbjct: 194 ASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVD 253

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DJ T+N+L+  +CK G++     +   +   GL  D  TY  LI
Sbjct: 254 LAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLI 313

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 314 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLK 373

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G   + +  L EM   G  P    ++++ +G
Sbjct: 374 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTYNVLMNG 420



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 126/287 (43%), Gaps = 20/287 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FVP----------DKRTYAILVNA 96
           Y + +  LC  ++F  A +LI+ ++ RKG       F            D   ++ L+ A
Sbjct: 11  YCTTIHFLCTHQMFSEAKSLIQVVVSRKGKGSAXAVFAAILETKGTQRSDIYVFSGLITA 70

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +     P      +++ L+   Y +       ++++ G+   
Sbjct: 71  YLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPAS 130

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V +Y  L+    + G +DE FRL  
Sbjct: 131 LYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKS 190

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G +P    Y+ +I G+ +    DDA   F EM +KG  PN   +T LI    + G
Sbjct: 191 AMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNG 250

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           R   A     +M    L P    ++ +  GL  C K DL +   L++
Sbjct: 251 RVDLAMEIYKQMLSQXLLPDJITYNTLVYGL--CKKGDLNQAHGLID 295



 Score = 58.9 bits (141), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 2/212 (0%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F +E+ + G+   +   ++L+      G +  A  + + + K G    + ++N+L+    
Sbjct: 118 FYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYI 177

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           + G+++    +  ++   G+  DV TY +LI  + K   +D+A  L   ++  G  P   
Sbjct: 178 RLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXV 237

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            +  +I G  + G+ D A   + +M  +   P+   Y  L+    + G   +A   + EM
Sbjct: 238 TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEM 297

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
              GL P    +  + DG   C + DL    E
Sbjct: 298 XXKGLKPDKFTYTTLIDGC--CKEGDLDAAFE 327


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 148/327 (45%), Gaps = 8/327 (2%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           KT E M+ Y L       + +I+   K    V+ A E+F+K   +N +  +  Y  L+  
Sbjct: 175 KTFERMEKYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEG 234

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             + +       + R M   GF PD  TY I++NA+C + K  EA     +M  K  NP 
Sbjct: 235 WSQQQNLLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPS 294

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                  + GL N   ++ A +   K    GF  +  T+N+++   C S  ++    +  
Sbjct: 295 PHIYCTFITGLGNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVG 354

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL-VEDGHKPFPSLYAPIIKGMFRR 240
            + +LG+  +  TY I++  + K G   EA+ +   +  E G +P  S YA +++     
Sbjct: 355 EMKELGIGPNARTYDIILVHLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFCNE 414

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            Q D A   ++EMK KG  P   +++ LI       +  +A  Y  +M ++G+ P +  F
Sbjct: 415 NQLDMAMVVWNEMKDKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRPTANMF 474

Query: 301 D-----LVTDGLKNCGKHDLAEKIELL 322
                 L+  G++N   H  A+K++ L
Sbjct: 475 SAFKRALMAAGMENTVIH-FAKKVDKL 500



 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 151/313 (48%), Gaps = 17/313 (5%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFN---KCTAFNCQQCVLLYNSLLFALCE 64
           ++ + + VSP+ +  ++ +    G++  A+  F    K   FN      ++++L+ AL +
Sbjct: 77  LRNFPVEVSPELVVAVLNKLSNAGIL--ALSFFRWAEKQQGFN--HNTEIFHALIEALGK 132

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           ++ F   + L+  M ++  + +  T++++   +  +  ++EA +  + M   G  P +  
Sbjct: 133 IRQFKMIWNLVDEMKQRKLL-NGDTFSLIARRYVRAKVIKEALKTFERMEKYGLKPQISD 191

Query: 125 RDLLVQGLLNAGY-LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEM 179
            + L+  L  + + +E A+++ +KM +     +L+++  LIE   +   +    E C EM
Sbjct: 192 FNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPNLKSYTILIEGWSQQQNLLKVDEVCREM 251

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
                  G   DV TY I+I A  KA   DEA  + H+++     P P +Y   I G+  
Sbjct: 252 KDD----GFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCTFITGLGN 307

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             + D+AF FF + K  G PP  P Y  +++      R  +A   + EM E+G+ P +R 
Sbjct: 308 GSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNART 367

Query: 300 FDLVTDGLKNCGK 312
           +D++   L   G+
Sbjct: 368 YDIILVHLIKGGR 380


>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
 gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 9/319 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLL----YNSLLFALC 63
           ++ Y  S   + L+++++   K G V++A   F        + C+ L    +N L+   C
Sbjct: 183 IEKYGASKDREALNVLMDALVKEGDVEDAHSAF-----LEFKDCITLDSSSFNILIHGYC 237

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           + ++F  A  ++  M + GF PD  +Y+  + A+C     R  +    EM +KG  P V 
Sbjct: 238 KARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVI 297

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               ++  L  A  L  A ++  KM + G + D + ++SLI  + +SG ++   +++  +
Sbjct: 298 TYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDM 357

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K G+C ++  Y  +I +         A +LL  +  D  KP    YAP++K   RR   
Sbjct: 358 EKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSI 417

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
                  S M       +   YT+L+    R G+   A  Y  E    G+ P+ + F  +
Sbjct: 418 KLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKAL 477

Query: 304 TDGLKNCGKHDLAEKIELL 322
            + L+     ++ EKIE L
Sbjct: 478 VEELEQKNMKEMKEKIEKL 496



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/239 (17%), Positives = 105/239 (43%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +E M+ +       + S  I  + +     N   VF++     C+  V+ Y +++ AL
Sbjct: 247 KIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHAL 306

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            + +  + A  +  +M R G +PD + Y+ L+     SG++++A +  ++M  +G    +
Sbjct: 307 GKARQLNEALEVYEKMKRNGCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQGVCRNL 366

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + ++          SA +++ +M       D++T+  L++  C+   ++    +   
Sbjct: 367 WVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKMCCRRKSIKLLKFLLSH 426

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           + K  +  D+ TY +L+    + G ++ A       V  G  P    +  +++ + ++ 
Sbjct: 427 MFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPMVKTFKALVEELEQKN 485



 Score = 45.1 bits (105), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 1/148 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W   E M+   +  +    + +I     H    +A+++  +    +C+  V  Y  LL  
Sbjct: 351 WDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGDSCKPDVKTYAPLLKM 410

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C  K       L+  M +     D  TY +LVN +C +GK+  A  + QE   KG  P 
Sbjct: 411 CCRRKSIKLLKFLLSHMFKNNVSVDLGTYTLLVNEFCRNGKLEHACFYFQEAVLKGMVPM 470

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           V+    LV+ L     ++  K+ + K++
Sbjct: 471 VKTFKALVEELEQKN-MKEMKEKIEKLM 497


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 133/283 (46%), Gaps = 6/283 (2%)

Query: 23   IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY-ALIRRMIRK 81
            +I   GK G +D+A+++F +     C   V+ YN+++ AL E K       +   RM   
Sbjct: 1331 MINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKES 1390

Query: 82   GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
            G  P   TY+IL++ +C + +M +A   L+EM +KGF P       L+  L  A   + A
Sbjct: 1391 GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLA 1450

Query: 142  KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             ++  ++ +         +  +I+ + K+G ++  + M+  + KLG   DV  Y  L+  
Sbjct: 1451 CELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSG 1510

Query: 202  VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
            +++ GM+DEA   +  + E G  P  + Y  I+ G+ + G    A    S MK     P+
Sbjct: 1511 LARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPD 1570

Query: 262  RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
               Y  ++      G F EA+  + EM  +G       +DL+T
Sbjct: 1571 VVSYNTVLGALSHAGMFEEASKLMKEMNTLGFE-----YDLIT 1608



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 1/299 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T S +I  F K G  D+A+++ N+      Q    +Y  L+    +    HGA +L   M
Sbjct: 1222 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              +   PD  TY  L+     +G++ EA  F  EM  +G  P     + ++  L  AG L
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 1341

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK-LGLCADVSTYKI 197
            + A ++  +M     +  + T+N++I+ + +S      V  ++   K  G+     TY I
Sbjct: 1342 DDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSI 1401

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LI    K   +++A  LL  + E G  P P+ Y  +I  + +  ++D A   F E+K   
Sbjct: 1402 LIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENC 1461

Query: 258  HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
               +  VY ++I   G+ GR  +A N   EM ++G  P    ++ +  GL   G  D A
Sbjct: 1462 GSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEA 1520



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 138/319 (43%), Gaps = 3/319 (0%)

Query: 1    MWKTI-ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59
            MWK I E+++     V+P  LS ++   G   +V  A+ +F +     CQ     YNS++
Sbjct: 1132 MWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMI 1191

Query: 60   FALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
              L     +   + L   M  +G   PD  TY+ L++A+C  G+   A + L EM + G 
Sbjct: 1192 IMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGM 1251

Query: 119  NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
             P  +   +L+           A  +  +M  Q    D+ T+  LI  + K+G ++    
Sbjct: 1252 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 1311

Query: 179  MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
             +  + + G   D      +I  + KAG +D+A +L   +      P    Y  IIK +F
Sbjct: 1312 FFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALF 1371

Query: 239  R-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
              + +  +   +F  MK  G  P+   Y++LI    +  R  +A   L EM E G  P  
Sbjct: 1372 ESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP 1431

Query: 298  RCFDLVTDGLKNCGKHDLA 316
              +  + D L    ++DLA
Sbjct: 1432 AAYCSLIDALGKAKRYDLA 1450



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/320 (24%), Positives = 136/320 (42%), Gaps = 2/320 (0%)

Query: 8    MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
            MK   +  + +  +++I  F K      A+ +F +     C+  V  Y  L+  L +   
Sbjct: 1246 MKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGR 1305

Query: 68   FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               AY     M R+G  PD      ++N    +G++ +A +  QEM      P V   + 
Sbjct: 1306 IDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNT 1365

Query: 128  LVQGLLNAGYLES-AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
            +++ L  +    S       +M + G      T++ LI+  CK+  +E  + +   + + 
Sbjct: 1366 IIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEK 1425

Query: 187  GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
            G     + Y  LI A+ KA   D A  L   L E+       +YA +IK + + G+ DDA
Sbjct: 1426 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 1485

Query: 247  FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
               F EM   G  P+   Y  L++   R G   EA + +  M E G  P    ++++ +G
Sbjct: 1486 INMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNG 1545

Query: 307  L-KNCGKHDLAEKIELLEVS 325
            L K  G H   E +  ++ S
Sbjct: 1546 LAKTGGPHRAMEMLSNMKQS 1565



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 80/156 (51%)

Query: 14   SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
            S S +  +++I+  GK G +D+A+ +F++     C   V  YN+L+  L    +   A +
Sbjct: 1463 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 1522

Query: 74   LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
             +RRM   G +PD  +Y I++N    +G    A E L  M      P V   + ++  L 
Sbjct: 1523 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALS 1582

Query: 134  NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            +AG  E A +++ +M   GF  DL T++S++E I K
Sbjct: 1583 HAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGK 1618



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 127/302 (42%), Gaps = 1/302 (0%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I   GK G +D A   F +     C+   +  N+++  L +      A  L + M
Sbjct: 1292 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM 1351

Query: 79   IRKGFVPDKRTYAILVNA-WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
                 +P   TY  ++ A + S  +  E   + + M + G +P      +L+ G      
Sbjct: 1352 ETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNR 1411

Query: 138  LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            +E A  ++ +M ++GF      + SLI+ + K+   +   E++  + +    +    Y +
Sbjct: 1412 MEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAV 1471

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            +I  + KAG +D+A  +   + + G  P    Y  ++ G+ R G  D+A      M+  G
Sbjct: 1472 MIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHG 1531

Query: 258  HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              P+   Y +++    + G    A   L  M +  + P    ++ V   L + G  + A 
Sbjct: 1532 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAS 1591

Query: 318  KI 319
            K+
Sbjct: 1592 KL 1593



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 104/213 (48%)

Query: 6    ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            E MK   +S S  T S++I+ F K   ++ A+ +  +        C   Y SL+ AL + 
Sbjct: 1385 ERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 1444

Query: 66   KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            K +  A  L + +         R YA+++     +G++ +A     EM+  G  P V   
Sbjct: 1445 KRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAY 1504

Query: 126  DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            + L+ GL   G L+ A   + +M + G + D+ ++N ++  + K+G     +EM  ++ +
Sbjct: 1505 NALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQ 1564

Query: 186  LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
              +  DV +Y  ++ A+S AGM +EA +L+  +
Sbjct: 1565 STVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597



 Score = 71.6 bits (174), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 114/263 (43%), Gaps = 2/263 (0%)

Query: 47   NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSGKMRE 105
            N +     Y +L+  L  V+ +   + +I+ M+R    V      + +V    ++  +R+
Sbjct: 1108 NYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTELSDVVRMLGNAKMVRQ 1167

Query: 106  AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLI 164
            A     ++  +   P  +  + ++  L++ G  E   Q+ N+M  +G    D  T+++LI
Sbjct: 1168 AITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALI 1227

Query: 165  ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
               CK G  +  +++   + ++G+      Y +LI    K      A  L   +     +
Sbjct: 1228 SAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCR 1287

Query: 225  PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
            P    Y  +I+G+ + G+ D+A+ FF EM+ +G  P+      +I   G+ GR  +A   
Sbjct: 1288 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKL 1347

Query: 285  LVEMTEMGLTPISRCFDLVTDGL 307
              EM  +   P    ++ +   L
Sbjct: 1348 FQEMETLRCIPSVVTYNTIIKAL 1370



 Score = 70.9 bits (172), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 10/246 (4%)

Query: 80   RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP-----PVRGRDLLVQGLLN 134
            R+ +  D  TY  L++      +  E  + +QEM     NP     P    D+ V+ L N
Sbjct: 1106 RRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVR---NPICVVTPTELSDV-VRMLGN 1161

Query: 135  AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVS 193
            A  +  A  +  ++  +      + +NS+I  +   G+ E   ++Y  +   G C  D  
Sbjct: 1162 AKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTV 1221

Query: 194  TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            TY  LI A  K G  D A +LL+ + E G +P   +Y  +I   F+      A   F EM
Sbjct: 1222 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281

Query: 254  KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            + +   P+   YT LI   G+ GR  EA ++  EM   G  P +   + + + L   G+ 
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 1341

Query: 314  DLAEKI 319
            D A K+
Sbjct: 1342 DDAMKL 1347


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 128/287 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ YN+L+     +      + L   M 
Sbjct: 128 FNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMH 187

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA E   EM   G  P       L+ G    G ++
Sbjct: 188 ASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVD 247

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++    +   +   G   D  TY  LI
Sbjct: 248 LAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLI 307

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 308 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXK 367

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P+   YTM+I    + G     +  L EM   G  P    ++++ +G
Sbjct: 368 PDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 121/270 (44%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   +Y  L++ +   G + E       M
Sbjct: 127 FFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAM 186

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+  G V    TF +LI+  CK+G V
Sbjct: 187 HASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRV 246

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  LI  + K G + +A  L+  +   G KP    Y  +
Sbjct: 247 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTL 306

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  D AF     M  +    +   YT LI+   + GR V+A   L EM  +G 
Sbjct: 307 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGX 366

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P +R + ++ +    C K D+    +LL+
Sbjct: 367 KPDTRTYTMIINEF--CKKGDVWTGSKLLK 394



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 119/272 (43%), Gaps = 2/272 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           +L  L ++K F   +   + ++  G+      + IL++ +C  G +R AQ     ++  G
Sbjct: 96  VLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWG 155

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P V   + L+ G +  G L+   ++ + M   G   D+ T++ LI  +CK  +++   
Sbjct: 156 LRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEAN 215

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
           E++  +   GL     T+  LI    K G +D A  +   ++     P    Y  +I G+
Sbjct: 216 ELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 275

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
            ++G    A     EM +KG  P++  YT LI  C + G    A  +   M +  +    
Sbjct: 276 CKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDD 335

Query: 298 RCFDLVTDGLKNCGKHDLAEKI--ELLEVSLR 327
             +  +  GL   G+   AEK+  E+L V  +
Sbjct: 336 VAYTALISGLCQEGRSVDAEKMLREMLSVGXK 367



 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 117/264 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 149 DAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 208

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP   T+  L++  C +G++  A E  ++M  +   P +   
Sbjct: 209 XKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITY 268

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A  ++ +M  +G   D  T+ +LI+  CK G+++   E    + +
Sbjct: 269 NTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQ 328

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 329 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWT 388

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  GH P+   Y +L+
Sbjct: 389 GSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 98/218 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D A E+F++          + + +L+   C+      A  + ++M
Sbjct: 197 TYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQM 256

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +  +PD  TY  L+   C  G +++A   + EMS KG  P       L+ G    G L
Sbjct: 257 LSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDL 316

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A +   +MI++   LD   + +LI  +C+ G      +M   +  +G   D  TY ++
Sbjct: 317 DTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMI 376

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G +    +LL  +  DGH P    Y  ++ G
Sbjct: 377 INEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 3/244 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +     
Sbjct: 53  SDIXVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGF 112

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             ++++ G+   L  FN L+   CK G +     ++ ++ K GL   V +Y  L+    +
Sbjct: 113 YQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIR 172

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
            G +DE FRL   +   G +P    Y+ +I G+ +  + D+A   F EM + G  P    
Sbjct: 173 LGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVT 232

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE-KIELLE 323
           +T LI    + GR   A     +M    L P    ++ +  GL  C K BL +  + + E
Sbjct: 233 FTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL--CKKGBLKQAHVLIXE 290

Query: 324 VSLR 327
           +SL+
Sbjct: 291 MSLK 294


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY+ ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +M +  L+P +  ++ +   L    K D A+++ +LE+  R +
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL-ILEMLDRGI 475



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P   VY  LI       ++ +A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID--SHCKEGRV 495

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 496 IESEKLFDLMVR 507



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 35/307 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    S++I  + K G VD A+ VF+K                  
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK------------------ 399

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P
Sbjct: 400 -----------------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+  L      + AK+++ +M+ +G  LD   FNS+I++ CK G V    +++
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + ++G+  D+ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + +DA   F EM+  G  P+   Y +++    +  R   A    V +TE G       +
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 301 DLVTDGL 307
           +++  GL
Sbjct: 623 NIILHGL 629



 Score =  100 bits (250), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV               YNS++   C       A   +++M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   +   F+ LI    K G+V+  + ++  + + GL  D  TY  +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A R    ++++   P   +Y  +I  +    ++D A     EM  +G 
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  +I    + GR +E+      M  +G+ P    +  + DG    GK D A K
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 319 I 319
           +
Sbjct: 536 L 536



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + + G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L   L  +G  P    Y+ + + +  +G  ++    F  M+  G   N 
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDE 752



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T++S+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+ +LC    
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   D   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+N+LI   CK   +E  + ++  +   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    D+A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +    ++  GL P  R + L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 88.2 bits (217), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 130/325 (40%), Gaps = 35/325 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G    A+    K  +   +  V+ YNSL+  LC+      A  +   
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P+  TY  L+  + + G + E    L  M   G +P      +L+      G 
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----------------------- 174
           ++ A  + +KM +QG   D  T+ ++I  +CKSG VE                       
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 175 ----FCV--------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                C+        E+   +   G+C D   +  +I +  K G + E+ +L   +V  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            KP    Y+ +I G    G+ D+A    + M   G  P+   Y  LI    +  R  +A 
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G++P    ++++  GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGL 594



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY IL+ + C +G++      L  +  
Sbjct: 60  ALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIK 119

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V   ++L++GL +    +
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQ 179

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+ ++ ++I    K G+++     Y+ +   G+  +V TY  
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    + GR  EA      MT+ GL P    +  +  G    G   L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA--LVE 357

Query: 318 KIELLEVSLRS 328
              LL++ +R+
Sbjct: 358 MHGLLDLMVRN 368



 Score = 39.3 bits (90), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  ++ TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTY 94

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI +   AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN   Y +L+       R  EA   L  M + G
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 23/264 (8%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  LC+  +   A  L+  MIR G +PD  TY+ L++ +CS GK+ EA   L EM 
Sbjct: 364 YNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMI 423

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
               +P     ++L+  L   G +  A+ ++ KM ++G+ +D  T N +I  +C +G+++
Sbjct: 424 SNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLD 483

Query: 175 FCVEMYYSVCKLGLCA-----------------------DVSTYKILIPAVSKAGMIDEA 211
             +E+   +   G  A                       D+ TY  +I  + KAG +D+A
Sbjct: 484 KAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDA 543

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            +    ++  G +P  ++Y   I    R G+   AF    +M+ +G       Y  LI  
Sbjct: 544 KKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILG 603

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
            G   +  E    + EM E G++P
Sbjct: 604 LGSKNQIFELYGLIDEMREKGVSP 627



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 138/309 (44%), Gaps = 16/309 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S ++  +   G V  A  + ++  + NC       N LL +L +      A  L+++M
Sbjct: 398 TYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKM 457

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG+  D  T  I++NA C++G++ +A E +  M   G              L N G  
Sbjct: 458 NEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHG-----------SAALGNLG-- 504

Query: 139 ESAKQMVNKMIK-QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            S   +V+  I  +    DL T++++I  +CK+G ++   + +  +   GL  D + Y  
Sbjct: 505 NSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDT 564

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            I +  + G I  AF++L ++ + G       Y  +I G+  + Q  + +    EM+ KG
Sbjct: 565 FIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKG 624

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  ++     GGR  +A + L EM + G++P    F ++      C   D   
Sbjct: 625 VSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAF--CKACDFKA 682

Query: 318 KIELLEVSL 326
             E+ E++L
Sbjct: 683 SHEVFEIAL 691



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 129/291 (44%), Gaps = 6/291 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++    K G  + A+  F    +     Q  + LYN LL +            L + M+ 
Sbjct: 81  LVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVL 140

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+  T+ +L+   C SG + +A+E   +M  +G  P      +LV+G   AG    
Sbjct: 141 ARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASK 200

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
             +++ +M   G + +   +N+LI + CK G+     ++   + + GL   V T+   I 
Sbjct: 201 GLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRIS 260

Query: 201 AVSKAGMIDEAFRLLHNLV--EDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSEMKIK 256
           A+  +G I EA R+  ++   E+   P P++  Y  ++ G  + G  ++A      MK  
Sbjct: 261 ALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRN 320

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
            +  N   Y + +    R G+ +EA   L EM  +G+ P    +++V DGL
Sbjct: 321 ANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGL 371



 Score = 91.3 bits (225), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/273 (26%), Positives = 125/273 (45%), Gaps = 6/273 (2%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +N L+  LC+      A  L  +M  +G  P++ T+ ILV  +C +G   +  E L +M 
Sbjct: 150 FNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMR 209

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             G  P     + L+      G    A+++V+KM + G V  +ETFNS I  +C SG++ 
Sbjct: 210 TMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGKIL 269

Query: 175 FCVEMYYSVC---KLGL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
               ++  +    +LGL   +V TYK+++    K GM++EA  L+  +  + +      Y
Sbjct: 270 EASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESY 329

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
              + G+ R G+  +A+    EM   G  P+   Y +++    + G   +A   +  M  
Sbjct: 330 NIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIR 389

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            G+ P +  +  +  G   C K  + E   LL 
Sbjct: 390 NGILPDTVTYSTLLHGY--CSKGKVFEANNLLH 420



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 111/273 (40%), Gaps = 23/273 (8%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y  +L   C+  +   A  L+  M R     +  +Y I +     +GK+ EA   L+
Sbjct: 291 VITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLK 350

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P +   ++++ GL   G L  A+ ++  MI+ G + D  T+++L+   C  G
Sbjct: 351 EMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKG 410

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V     + + +       +  T  +L+ ++ K G I EA  LL  + E G+        
Sbjct: 411 KVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCN 470

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHP-----------------------PNRPVYTML 268
            II  +   GQ D A    + M   G                         P+   Y+ +
Sbjct: 471 IIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTI 530

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           I+   + GR  +A    +EM   GL P S  +D
Sbjct: 531 ISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYD 563



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 151/373 (40%), Gaps = 64/373 (17%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  +++  + + GL    +E+  +          +LYN+L+ + C+    H A  L+ +M
Sbjct: 184 TFGILVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKM 243

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS-DKGF---NPPVRGRDLLVQGLLN 134
              G VP   T+   ++A C SGK+ EA    ++M  D+     +P V    L++ G   
Sbjct: 244 REDGLVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCK 303

Query: 135 AGYLESAKQMVNKM-------------------IKQGFVL----------------DLET 159
            G LE AK +V+ M                   I+ G +L                D+ +
Sbjct: 304 EGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYS 363

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
           +N +++ +CK+G +     +   + + G+  D  TY  L+      G + EA  LLH ++
Sbjct: 364 YNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMI 423

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRG--G 276
            +   P       ++  +++ G+  +A     +M  KG+  +     ++I  +C  G   
Sbjct: 424 SNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLD 483

Query: 277 RFVEAANYLVEMTEMGLTPISRCF---------------DLVT-----DGLKNCGKHDLA 316
           + +E  N +       L  +   F               DLVT      GL   G+ D A
Sbjct: 484 KAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDA 543

Query: 317 EK--IELLEVSLR 327
           +K  IE++   L+
Sbjct: 544 KKKFIEMMSKGLQ 556



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 39/354 (11%)

Query: 1   MWKTIELMKPYNL---------SVSPQTLSLIIEEFGKHGLVDNAVEVFN---------- 41
           +WK   + +  NL          V   T ++II     +G +D A+E+ N          
Sbjct: 441 LWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAAL 500

Query: 42  -------------KCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
                          +   C   ++ Y++++  LC+      A      M+ KG  PD  
Sbjct: 501 GNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSA 560

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y   ++++C  GK+  A + L++M  +G N  ++  + L+ GL +   +     ++++M
Sbjct: 561 IYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEM 620

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA--- 205
            ++G   D+ T+N ++  +C+ G +     +   + + G+  ++S+++ILI A  KA   
Sbjct: 621 REKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDF 680

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
               E F +  N+   GHK   +LY  +   +   G+  +A   F     +       +Y
Sbjct: 681 KASHEVFEIALNVC--GHK--EALYTLMFNELLVGGKVAEAKELFETALDRSFDIGNFLY 736

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             LI    +  +   A++ L  + + G       F  V DG    G   +A+++
Sbjct: 737 KDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADEL 790



 Score = 70.5 bits (171), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 105/279 (37%), Gaps = 36/279 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K IE+M    L          I  F + G + +A +V        C + +  YNSL+  L
Sbjct: 546 KFIEMMSK-GLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGL 604

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                    Y LI  M  KG  PD  TY  ++N  C  G++ +A   L EM  KG +P +
Sbjct: 605 GSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNI 664

Query: 123 RGRDLLVQG----------------------------------LLNAGYLESAKQMVNKM 148
               +L++                                   LL  G +  AK++    
Sbjct: 665 SSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGGKVAEAKELFETA 724

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           + + F +    +  LI+ +CK  ++E   ++ + +   G   D +++  +I    K G  
Sbjct: 725 LDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNK 784

Query: 209 DEAFRLLHNLVEDGHKPFPSLYA-PIIKGMFRRGQFDDA 246
             A  L   ++E   +      A P +KG   R +  DA
Sbjct: 785 HVADELAERMMEMASESNKENKAYPNVKGHILRNKNKDA 823


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY+ ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTP 295
           +M +  L+P
Sbjct: 434 QMIDERLSP 442



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P   VY  LI       ++ +A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID--SHCKEGRV 495

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 496 IESEKLFDLMVR 507



 Score =  110 bits (275), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 35/307 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    S++I  + K G VD A+ VF+K                  
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK------------------ 399

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P
Sbjct: 400 -----------------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+  L      + AK+++ +M+ +G  LD   FNS+I++ CK G V    +++
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + ++G+  D+ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + +DA   F EM+  G  P+   Y +++    +  R   A    V +TE G       +
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 301 DLVTDGL 307
           +++  GL
Sbjct: 623 NIILHGL 629



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV               YNS++   C       A   +++M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   +   F+ LI    K G+V+  + ++  + + GL  D  TY  +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A R    ++++   P   +Y  +I  +    ++D A     EM  +G 
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  +I    + GR +E+      M  +G+ P    +  + DG    GK D A K
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 319 I 319
           +
Sbjct: 536 L 536



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + + G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L   L  +G  P    Y+ + + +  +G  ++    F  M+  G   N 
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDE 752



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T++S+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+ +LC    
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   D   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+N+LI   CK   +E  + ++  +   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    D+A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +    ++  GL P  R + L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 87.8 bits (216), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 130/325 (40%), Gaps = 35/325 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G    A+    K  +   +  V+ YNSL+  LC+      A  +   
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P+  TY  L+  + + G + E    L  M   G +P      +L+      G 
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----------------------- 174
           ++ A  + +KM +QG   D  T+ ++I  +CKSG VE                       
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 175 ----FCV--------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                C+        E+   +   G+C D   +  +I +  K G + E+ +L   +V  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            KP    Y+ +I G    G+ D+A    + M   G  P+   Y  LI    +  R  +A 
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G++P    ++++  GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGL 594



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY IL+ + C +G++      L  +  
Sbjct: 60  ALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIK 119

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V   ++L++GL +    +
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQ 179

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+ ++ ++I    K G+++     Y+ +   G+  +V TY  
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    + GR  EA      MT+ GL P    +  +  G    G   L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA--LVE 357

Query: 318 KIELLEVSLRS 328
              LL++ +R+
Sbjct: 358 MHGLLDLMVRN 368



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 2/161 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           VSP   T ++I++   +      A E++   T    Q  +  YN +L  LC+  L   A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            + + +       + RT+ I++ A    G+  EA++    +S  G  P VR   L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           +  G LE    +   M + G   +    NS++  + + G++
Sbjct: 700 IEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDI 740



 Score = 39.7 bits (91), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  ++ TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTY 94

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI +   AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN   Y +L+       R  EA   L  M + G
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 1/283 (0%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY+ ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +M +  L+P +  ++ +   L    K D A+++ +LE+  R +
Sbjct: 434 QMIDERLSPGNIVYNSLIHSLCIFDKWDKAKEL-ILEMLDRGI 475



 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/312 (25%), Positives = 155/312 (49%), Gaps = 8/312 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           +   P   VY  LI       ++ +A   ++EM + G+   +  F+ + D   +C +  +
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIID--SHCKEGRV 495

Query: 316 AEKIELLEVSLR 327
            E  +L ++ +R
Sbjct: 496 IESEKLFDLMVR 507



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 35/307 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    S++I  + K G VD A+ VF+K                  
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK------------------ 399

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P
Sbjct: 400 -----------------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + L+  L      + AK+++ +M+ +G  LD   FNS+I++ CK G V    +++
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + ++G+  D+ TY  LI     AG +DEA +LL ++V  G KP    Y  +I G  + 
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKI 562

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + +DA   F EM+  G  P+   Y +++    +  R   A    V +TE G       +
Sbjct: 563 SRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTY 622

Query: 301 DLVTDGL 307
           +++  GL
Sbjct: 623 NIILHGL 629



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 131/301 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV               YNS++   C       A   +++M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   +   F+ LI    K G+V+  + ++  + + GL  D  TY  +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K+G +++A R    ++++   P   +Y  +I  +    ++D A     EM  +G 
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGI 475

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
             +   +  +I    + GR +E+      M  +G+ P    +  + DG    GK D A K
Sbjct: 476 CLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATK 535

Query: 319 I 319
           +
Sbjct: 536 L 536



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 123/268 (45%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+   K G V  + ++F+       +  ++ Y++L+   C       A  L+  M+  G
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 544

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             PD  TY  L+N +C   +M +A    +EM   G +P +   ++++QGL       +AK
Sbjct: 545 MKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 604

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           ++   + + G  L+L T+N ++  +CK+   +  + M+ ++C   L  +  T+ I+I A+
Sbjct: 605 ELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 664

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G  DEA  L   L  +G  P    Y+ + + +  +G  ++    F  M+  G   N 
Sbjct: 665 LKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANS 724

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTE 290
            +   ++    + G    A  YL  + E
Sbjct: 725 RMLNSIVRKLLQRGDITRAGTYLFMIDE 752



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  +L  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T++S+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 132/300 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L+    T   +I    K G V++A+  F +          ++YNSL+ +LC    
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDK 459

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  LI  M+ +G   D   +  ++++ C  G++ E+++    M   G  P +     
Sbjct: 460 WDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYST 519

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G   AG ++ A +++  M+  G   D  T+N+LI   CK   +E  + ++  +   G
Sbjct: 520 LIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSG 579

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D+ TY I++  + +      A  L   + E G +   S Y  I+ G+ +    D+A 
Sbjct: 580 VSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEAL 639

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F  + +         + ++I    + GR  EA +    ++  GL P  R + L+ + L
Sbjct: 640 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENL 699



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 128/277 (46%), Gaps = 5/277 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF-LQEM 113
           Y  L+ + C        +A +  +I+KGF+ D   +  ++   C+  +  +A +  L+ M
Sbjct: 94  YGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRM 153

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSG 171
           +  G  P V   ++L++GL +    + A +++  M   G     D+ ++ ++I    K G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++     Y+ +   G+  +V TY  +I A+ KA  +D+A  +L ++V++G  P    Y 
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            I+ G    GQ  +A  F  +M   G  P+   Y  L+    + GR  EA      MT+ 
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           GL P    +  +  G    G   L E   LL++ +R+
Sbjct: 334 GLKPEITTYGTLLQGYATKGA--LVEMHGLLDLMVRN 368



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 130/325 (40%), Gaps = 35/325 (10%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G    A+    K  +   +  V+ YNSL+  LC+      A  +   
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P+  TY  L+  + + G + E    L  M   G +P      +L+      G 
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE----------------------- 174
           ++ A  + +KM +QG   D  T+ ++I  +CKSG VE                       
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNS 449

Query: 175 ----FCV--------EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
                C+        E+   +   G+C D   +  +I +  K G + E+ +L   +V  G
Sbjct: 450 LIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIG 509

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282
            KP    Y+ +I G    G+ D+A    + M   G  P+   Y  LI    +  R  +A 
Sbjct: 510 VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDAL 569

Query: 283 NYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G++P    ++++  GL
Sbjct: 570 VLFREMESSGVSPDIITYNIILQGL 594


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 140/315 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L  +  T ++ I   G+ G +D A  +  +     C   V+ Y  L+ ALC 
Sbjct: 252 LEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCT 311

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L  +M      PD+ TY  +++ +   G +   +EF  EM   G+ P V  
Sbjct: 312 AGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVIT 371

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +LV  L  AG ++ A  +++ M KQG + +L T+N+LI  + +   ++  ++++ ++ 
Sbjct: 372 FTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNME 431

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+     TY + I    K+G  D+A      +   G  P        +  +   G+  
Sbjct: 432 TLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLR 491

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+ +K  G  P+   Y M++    + G+  EA   L +M+E    P     + + 
Sbjct: 492 EAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLI 551

Query: 305 DGLKNCGKHDLAEKI 319
           + L   G+ D A K+
Sbjct: 552 NTLYKAGRVDEAWKM 566



 Score =  110 bits (276), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 131/288 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+     ++  + + +I    + GL   A+E++ +      +  +  +++L+ A  + + 
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                +L+  M   G  P+  TY I +     +G++ EA   ++ M D G  P V    +
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTV 304

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L  AG L+ A ++  KM       D  T+ ++++     G++    E +  +   G
Sbjct: 305 LIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADG 364

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV T+ IL+ A+ KAG IDEAF LL  + + G  P    Y  +I G+ R  + DDA 
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDAL 424

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F+ M+  G  P    Y + I   G+ GR  +A     +M   G+ P
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAP 472



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 143/336 (42%), Gaps = 35/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+     G +D+A+E+F K  A + +   + Y ++L    +             M
Sbjct: 301 TYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEM 360

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G+ PD  T+ ILVNA C +G + EA   L  M  +G  P +   + L+ GLL    L
Sbjct: 361 EADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRL 420

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY------------------ 180
           + A  + N M   G V    T+   I+   KSG  +  +E +                  
Sbjct: 421 DDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNAS 480

Query: 181 -YSVCKLG----------------LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
            YS+ ++G                L  D  TY +++   SKAG +DEA  LL ++ E+  
Sbjct: 481 LYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQC 540

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P   +   +I  +++ G+ D+A+  F  +K     P    Y  LI   G+ G+   A  
Sbjct: 541 EPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAME 600

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               MT  G  P +  F+ + D L    + DLA K+
Sbjct: 601 LFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKM 636



 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 133/299 (44%)

Query: 2    WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            W     MK    +    T +L+++  GK G ++   E++ +    +C+   + +N ++  
Sbjct: 810  WNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIAN 869

Query: 62   LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            L +      A  L   ++   F P   TY  L++    SG++ EA+E  +EM D G  P 
Sbjct: 870  LVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPN 929

Query: 122  VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                ++L+ G    G + +A ++  +M+++G   DL+++ SL+  +C++G V+  +  + 
Sbjct: 930  NAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFE 989

Query: 182  SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             + + GL  D   Y ++I  + ++  I+EA  L   +   G  P    Y  +I  +   G
Sbjct: 990  KLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAG 1049

Query: 242  QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              + A   + E++  G  PN   Y  LI      G    A      M   G +P +  F
Sbjct: 1050 MVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 125/289 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++    K G +D A  + +          +  YN+L+  L  V     A  L   M
Sbjct: 371 TFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM 430

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP   TY + ++ +  SG+  +A E  ++M  +G  P +   +  +  L   G L
Sbjct: 431 ETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRL 490

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK + N++   G   D  T+N +++   K+G+V+  +E+   + +     D+     L
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSL 550

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +DEA+++   L +    P    Y  +I G+ + GQ   A   F+ M   G 
Sbjct: 551 INTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGC 610

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           PPN   +  ++    +      A   L +MT M   P    F+ +  GL
Sbjct: 611 PPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGL 659



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 7/318 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E +KP     S +T S ++   GK    +    +  +  +   +  +  Y   +  L  
Sbjct: 222 LEGLKP-----SLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGR 276

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  +++RM   G  PD  TY +L++A C++GK+ +A E   +M      P    
Sbjct: 277 AGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVT 336

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++    + G L   K+  ++M   G+  D+ TF  L+  +CK+G ++    +   + 
Sbjct: 337 YITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMR 396

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           K G+  ++ TY  LI  + +   +D+A  L +N+   G  P    Y   I    + G+ D
Sbjct: 397 KQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSD 456

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   F +MKI+G  PN       +      GR  EA      +   GL P S  ++++ 
Sbjct: 457 KALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMM 516

Query: 305 DGLKNCGKHDLAEKIELL 322
                 G+ D  E IELL
Sbjct: 517 KCYSKAGQVD--EAIELL 532



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 2/257 (0%)

Query: 14   SVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            S  P T++  +II    K   +D A+++F    + +       Y  LL  L +      A
Sbjct: 855  SCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEA 914

Query: 72   YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              L   M+  G  P+   Y IL+N +  +G +  A E  + M  +G  P ++    LV  
Sbjct: 915  KELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGC 974

Query: 132  LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L  AG ++ A     K+ + G  LD   +N +I+ + +S  +E  + +Y  +   G+  D
Sbjct: 975  LCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPD 1034

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
            + TY  LI  +  AGM+++A +L   L   G +P    Y  +I+G    G  D A+  + 
Sbjct: 1035 LFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYK 1094

Query: 252  EMKIKGHPPNRPVYTML 268
             M + G  PN   +  L
Sbjct: 1095 RMMVGGCSPNTGTFAQL 1111



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D  TY I+       G +R+      +M + GF+      + L+  LL +G    A +M 
Sbjct: 158 DLNTYLIIFKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMY 217

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            +M+ +G    L+TF++L+    K  + E    +   +  LGL  ++ TY I I  + +A
Sbjct: 218 RRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRA 277

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G IDEA R++  + +DG  P    Y  +I  +   G+ DDA   F +MK   H P+R  Y
Sbjct: 278 GRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTY 337

Query: 266 -TML--ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            TML   + CG  GR  E   +  EM   G  P    F ++ + L  C   ++ E   LL
Sbjct: 338 ITMLDKFSDCGDLGRVKE---FWSEMEADGYAPDVITFTILVNAL--CKAGNIDEAFHLL 392

Query: 323 EV 324
           +V
Sbjct: 393 DV 394



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 138/310 (44%), Gaps = 4/310 (1%)

Query: 13   LSVSP--QTLSLIIEEF-GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            L V P  ++ + +IE F G H   + A  +F +     C   V  YN LL A  +    +
Sbjct: 784  LGVKPTLESYNFLIEGFLGVHN-DEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKIN 842

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
              + L  +MI     P+  T+ I++     S  + +A +   ++    F+P       L+
Sbjct: 843  ELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLL 902

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             GLL +G LE AK++  +M+  G   +   +N LI    K+G+V    E++  + + G+ 
Sbjct: 903  DGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIR 962

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
             D+ +Y  L+  + +AG +D+A      L + G       Y  +I G+ R  + ++A   
Sbjct: 963  PDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTL 1022

Query: 250  FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            + EM+ +G  P+   Y  LI   G  G   +A     E+  +GL P    ++ +  G   
Sbjct: 1023 YDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSM 1082

Query: 310  CGKHDLAEKI 319
             G  D A  +
Sbjct: 1083 SGNSDSAYAV 1092



 Score = 97.4 bits (241), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 2/244 (0%)

Query: 13  LSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           L V P   T  L I+ +GK G  D A+E F K         ++  N+ L++L E+     
Sbjct: 433 LGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLRE 492

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  +  R+   G  PD  TY +++  +  +G++ EA E L +MS+    P +   + L+ 
Sbjct: 493 AKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLIN 552

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            L  AG ++ A +M  ++        + T+N+LI  + K G+V+  +E++ S+   G   
Sbjct: 553 TLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPP 612

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  T+  ++  + K   +D A ++L+ +      P    +  II G+    +  DA   F
Sbjct: 613 NTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLF 672

Query: 251 SEMK 254
            +MK
Sbjct: 673 HQMK 676



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 111/222 (50%)

Query: 12   NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            + S +P T   +++   K G ++ A E+F +   + C+    +YN L+    +    + A
Sbjct: 890  DFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTA 949

Query: 72   YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              L +RM+R+G  PD ++Y  LV   C +G++ +A  + +++   G        +L++ G
Sbjct: 950  CELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDG 1009

Query: 132  LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L  +  +E A  + ++M  +G   DL T+NSLI  +  +G VE   ++Y  +  +GL  +
Sbjct: 1010 LGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPN 1069

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
            V TY  LI   S +G  D A+ +   ++  G  P    +A +
Sbjct: 1070 VFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score = 94.4 bits (233), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 1/274 (0%)

Query: 23   IIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
            II+   KH     A  VF + T     +  +  YN L+     V     A+ L   M   
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 82   GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
            G  PD  TY +L++A   SGK+ E  E  ++M      P     ++++  L+ +  L+ A
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 142  KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
              +   ++   F     T+  L++ + KSG +E   E++  +   G   + + Y ILI  
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 202  VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
              K G ++ A  L   +V +G +P    Y  ++  +   G+ DDA  +F ++K  G   +
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 262  RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               Y ++I   GR  R  EA     EM   G+ P
Sbjct: 1000 SIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINP 1033



 Score = 88.2 bits (217), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 5/242 (2%)

Query: 93   LVNAWCSSGKMREAQE-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            ++   C   +   AQ  F++   + G  P +   + L++G L     E A  +  +M   
Sbjct: 760  IIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNA 819

Query: 152  GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
            G   D+ T+N L++   KSG++    E+Y  +       +  T+ I+I  + K+  +D+A
Sbjct: 820  GCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKA 879

Query: 212  FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
              L ++LV     P P  Y P++ G+ + G+ ++A   F EM   G  PN  +Y +LI  
Sbjct: 880  LDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILING 939

Query: 272  CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA----EKIELLEVSLR 327
             G+ G    A      M   G+ P  + +  +   L   G+ D A    EK++   + L 
Sbjct: 940  FGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLD 999

Query: 328  SV 329
            S+
Sbjct: 1000 SI 1001



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 116/263 (44%), Gaps = 3/263 (1%)

Query: 62   LCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            LC+ K    A ++  R  ++ G  P   +Y  L+  +        A     EM + G  P
Sbjct: 764  LCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP 823

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
             V   +LL+     +G +    ++  +MI      +  T N +I  + KS  ++  ++++
Sbjct: 824  DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLF 883

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
            Y +          TY  L+  + K+G ++EA  L   +V+ G +P  ++Y  +I G  + 
Sbjct: 884  YDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKT 943

Query: 241  GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            G  + A   F  M  +G  P+   YT L+      GR  +A +Y  ++ + GL   S  +
Sbjct: 944  GDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAY 1003

Query: 301  DLVTDGLKNCGKHDLAEKIELLE 323
            +L+ DGL     H + E + L +
Sbjct: 1004 NLMIDGLGR--SHRIEEALTLYD 1024



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 119/285 (41%), Gaps = 11/285 (3%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L+ +  T + +I   GK G V  A+E+F   T   C    + +N++L  
Sbjct: 564 WKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDC 623

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  ++ +M     +PD  T+  +++      ++ +A     +M  K   P 
Sbjct: 624 LCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMK-KMLTPD 682

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 L+ G++  G +E A ++    + + G  +D   +  L+  I      E  +   
Sbjct: 683 CVTLCTLLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFG 742

Query: 181 YSVCKLGLCADVSTYKILIPAVS-----KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             +    +C D S   +L+P +      K  ++ ++   +    E G KP    Y  +I+
Sbjct: 743 DRLVCGRVCKDGS---VLMPIIKVLCKHKQALVAQSV-FIRFTKELGVKPTLESYNFLIE 798

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
           G       + A+  F+EMK  G  P+   Y +L+   G+ G+  E
Sbjct: 799 GFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINE 843


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 123/277 (44%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D A++             V  YN L+ AL        AYA++  M + GF PD  TY
Sbjct: 233 GKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTY 292

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
            IL+N +C  G  ++A E  +EMS KG          L+      G ++   ++ N  +K
Sbjct: 293 NILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVK 352

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   D+  +N+LI + C  G++E   E+   + K  +  D  TY  L+      G +DE
Sbjct: 353 KGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDE 412

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A  L+  + + G +P    Y  +I G   +G   DA     EM  KG  P    Y  LI 
Sbjct: 413 ARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQ 472

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              +  +  +A N + EM   G+TP    +  + +GL
Sbjct: 473 GLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 137/302 (45%), Gaps = 1/302 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I  + K G +++AV+VF++  T        ++YN+L+   C+V     A      
Sbjct: 185 TYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYRED 244

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M+++G      TY +L++A     +  +A   L+EM   GF+P V   ++L+ G    G 
Sbjct: 245 MVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGN 304

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            + A ++  +M ++G      T+ SLI    + G+V+    ++    K G+  DV  Y  
Sbjct: 305 EKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNA 364

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI +    G ++ A+ ++  + +    P    Y  +++G    G+ D+A     EM  +G
Sbjct: 365 LINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRG 424

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  LI+     G   +A     EM + G  P    ++ +  GL    + D AE
Sbjct: 425 IQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAE 484

Query: 318 KI 319
            +
Sbjct: 485 NL 486



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 108/236 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +  +E M+    S    T +++I  + K G    A+EVF + +    +   + Y SL++ 
Sbjct: 274 YAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYV 333

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                       L    ++KG  PD   Y  L+N+ C+ G M  A E + EM  K   P 
Sbjct: 334 FSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPD 393

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               + L++G    G L+ A+ ++++M K+G   DL ++N+LI      G+++  + +  
Sbjct: 394 DMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRD 453

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   G    + TY  LI  + K    D+A  L+  +V  G  P  S Y  +I+G+
Sbjct: 454 EMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 13/312 (4%)

Query: 18  QTLSLIIEEFGKHGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++LS+ I     H L+ +     A  +F          C   +N +L  LC       A 
Sbjct: 77  KSLSVPIPVASLHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRAL 136

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQG 131
            L+R+M R    P+  TY  ++  +C+ G+++ A E ++EM ++ G  P       L+ G
Sbjct: 137 ELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISG 192

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLET-FNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
               G +E A ++ ++M+ +G V      +N+LI   C  G+++  ++    + + G+  
Sbjct: 193 WCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAM 252

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
            V+TY +L+ A+       +A+ +L  + ++G  P    Y  +I G  + G    A   F
Sbjct: 253 TVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVF 312

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM  KG       YT LI +  R G+  E         + G+ P    ++ + +   +C
Sbjct: 313 EEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINS--HC 370

Query: 311 GKHDLAEKIELL 322
              D+    E++
Sbjct: 371 TGGDMERAYEIM 382



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 97/198 (48%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E M    +  +  T + +I  F + G V     +FN       +  V++YN+L+ + C  
Sbjct: 313 EEMSQKGVRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTG 372

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY ++  M +K   PD  TY  L+  +C  G++ EA+  + EM+ +G  P +   
Sbjct: 373 GDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSY 432

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ G    G ++ A ++ ++M+ +GF   L T+N+LI+ +CK  + +    +   +  
Sbjct: 433 NTLISGYSMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVA 492

Query: 186 LGLCADVSTYKILIPAVS 203
            G+  D STY  LI  ++
Sbjct: 493 KGITPDDSTYISLIEGLT 510



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + YN+L+   C +     A  LI  M ++G  PD  +Y  L++ +   G +++A     E
Sbjct: 395 MTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDE 454

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M DKGFNP +   + L+QGL      + A+ ++ +M+ +G   D  T+ SLIE +    E
Sbjct: 455 MMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDE 514


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 149/336 (44%), Gaps = 35/336 (10%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+     G +D A E++ K  A + +  ++ Y +L+                  M
Sbjct: 299 TYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEM 358

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G+ PD  TY ILV A C SGK+ +A + L  M  +G  P +   + L+ GLLN   L
Sbjct: 359 EADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRL 418

Query: 139 ESAKQMVN-----------------------------------KMIKQGFVLDLETFNSL 163
           + A ++ N                                   KM K+G +  +   N+ 
Sbjct: 419 DEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNAS 478

Query: 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223
           + ++ + G +    +++  +   GL  D  TY +++   SKAG ID+A +LL  ++ +G 
Sbjct: 479 LYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGC 538

Query: 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283
           +P   +   +I  +++ G+ D+A+  F  +K     P    Y +LIT  G+ G+ ++A +
Sbjct: 539 EPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALD 598

Query: 284 YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               M E G  P +  F+ + D L      DLA K+
Sbjct: 599 LFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKM 634



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 140/317 (44%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  + M    L  S +T S ++   G+       +++  +      +  +  Y   +  L
Sbjct: 213 KVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVL 272

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                   AY +++ M  +G  PD  TY +L++A C++GK+ +A+E   +M      P +
Sbjct: 273 GRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDL 332

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+    N G LE+ K+  ++M   G+  D+ T+  L+E +CKSG+V+   +M   
Sbjct: 333 VTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDV 392

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           +   G+  ++ TY  LI  +     +DEA  L +N+   G  P    Y   I    + G 
Sbjct: 393 MRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGD 452

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + A   F +MK +G  P+       +      GR  EA +   ++   GL+P S  +++
Sbjct: 453 PEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNM 512

Query: 303 VTDGLKNCGKHDLAEKI 319
           +       G+ D A K+
Sbjct: 513 MMKCYSKAGQIDKATKL 529



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 127/282 (45%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T +L+++  GK   +D   E++N+     C+  ++ +N ++ AL +    + A  L   +
Sbjct: 825  TYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEI 884

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            I   F P   TY  L+     +G+  EA +  +EM D    P     ++L+ G   AG +
Sbjct: 885  ISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNV 944

Query: 139  ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
              A  +  +MIK+G   DL+++  L+E +  +G V+  V  +  +   GL  D  +Y ++
Sbjct: 945  NIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLM 1004

Query: 199  IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
            I  + K+  ++EA  L   +   G  P    Y  +I      G  D A   F E++  G 
Sbjct: 1005 INGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGL 1064

Query: 259  PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
             PN   Y  LI    + G    A +   +M  +G +P +  F
Sbjct: 1065 EPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 133/301 (44%)

Query: 16   SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            +P++ + +++      + + A+++F +     C   +  YN LL A  + K     + L 
Sbjct: 787  TPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELY 846

Query: 76   RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
              M+ +G  P+  T+ I+++A   S  + +A +   E+    F+P       L+ GLL A
Sbjct: 847  NEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKA 906

Query: 136  GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
            G  E A ++  +M       +   +N LI    K+G V    +++  + K G+  D+ +Y
Sbjct: 907  GRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSY 966

Query: 196  KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             IL+  +   G +D+A      L   G  P    Y  +I G+ +  + ++A   FSEMK 
Sbjct: 967  TILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKN 1026

Query: 256  KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            +G  P    Y  LI   G  G   +A     E+  MGL P    ++ +  G    G  D 
Sbjct: 1027 RGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDR 1086

Query: 316  A 316
            A
Sbjct: 1087 A 1087



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 136/312 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M+   L  +  T ++ I   G+ G +D+A  +        C   V+ Y  L+ ALC 
Sbjct: 250 LEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCA 309

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L  +M      PD  TY  L++ + + G +   + F  EM   G+ P V  
Sbjct: 310 AGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVT 369

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
             +LV+ L  +G ++ A  M++ M  +G V +L T+N+LI  +     ++  +E++ ++ 
Sbjct: 370 YTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNME 429

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            LG+     +Y + I    K G  ++A      + + G  P  +     +  +   G+  
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIR 489

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   F+++   G  P+   Y M++    + G+  +A   L EM   G  P     + + 
Sbjct: 490 EAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549

Query: 305 DGLKNCGKHDLA 316
           D L   G+ D A
Sbjct: 550 DTLYKAGRVDEA 561



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 123/265 (46%)

Query: 55   YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
            YN L+  L    +   A  L   M   G  P+  TY +L++A   S ++ E  E   EM 
Sbjct: 791  YNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEML 850

Query: 115  DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             +G  P +   ++++  L+ +  +  A  +  ++I   F     T+  LI  + K+G  E
Sbjct: 851  CRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSE 910

Query: 175  FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++++  +       + + Y ILI    KAG ++ A  L   ++++G +P    Y  ++
Sbjct: 911  EAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILV 970

Query: 235  KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            + +F  G+ DDA  +F E+K+ G  P+   Y ++I   G+  R  EA +   EM   G++
Sbjct: 971  ECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGIS 1030

Query: 295  PISRCFDLVTDGLKNCGKHDLAEKI 319
            P    ++ +     N G  D A K+
Sbjct: 1031 PELYTYNALILHFGNAGMVDQAGKM 1055



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%)

Query: 12   NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
            + S +P T   +I    K G  + A+++F +   + C+    +YN L+    +    + A
Sbjct: 888  DFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIA 947

Query: 72   YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              L +RMI++G  PD ++Y ILV     +G++ +A  + +E+   G +P     +L++ G
Sbjct: 948  CDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMING 1007

Query: 132  LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
            L  +  LE A  + ++M  +G   +L T+N+LI     +G V+   +M+  +  +GL  +
Sbjct: 1008 LGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPN 1067

Query: 192  VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
            V TY  LI   SK+G  D AF +   ++  G  P    +A +
Sbjct: 1068 VFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 125/298 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++++E   K G VD A ++ +          +  YN+L+  L  ++    A  L   M
Sbjct: 369 TYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNM 428

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  P   +Y + ++ +   G   +A +  ++M  +G  P +   +  +  L   G +
Sbjct: 429 ESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRI 488

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK + N +   G   D  T+N +++   K+G+++   ++   +   G   D+     L
Sbjct: 489 REAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSL 548

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +DEA+++   L +    P    Y  +I G+ + G+   A   F  MK  G 
Sbjct: 549 IDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGC 608

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           PPN   +  L+    +      A      MT M  +P    ++ +  GL   G+   A
Sbjct: 609 PPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYA 666



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 131/278 (47%), Gaps = 3/278 (1%)

Query: 12  NLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
           +L V+P   S  L I+ +GK G  + A++ F K         +   N+ L++L E+    
Sbjct: 430 SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIR 489

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A  +   +   G  PD  TY +++  +  +G++ +A + L EM  +G  P +   + L+
Sbjct: 490 EAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L  AG ++ A QM  ++        + T+N LI  + K G++   ++++ S+ + G  
Sbjct: 550 DTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCP 609

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +  T+  L+  + K   +D A ++   +      P    Y  II G+ + G+   AF F
Sbjct: 610 PNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWF 669

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287
           + +MK    P +  +YT+L  +  + GR  +A   ++E
Sbjct: 670 YHQMKKFLSPDHVTLYTLLPGVV-KDGRVEDAIKIVME 706



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 135/309 (43%), Gaps = 8/309 (2%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG-- 70
           LS    TL  ++    K G V++A+++      F  Q  +   N +   L E  L     
Sbjct: 677 LSPDHVTLYTLLPGVVKDGRVEDAIKI---VMEFVHQSGLQTSNQVWGELMECILIEAEI 733

Query: 71  --AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDL 127
             A +    ++      D      L+   C   K  +A++   + +   G +P     + 
Sbjct: 734 EEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNC 793

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GLL     E+A ++  +M   G   ++ T+N L++   KS  ++   E+Y  +   G
Sbjct: 794 LMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRG 853

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              ++ T+ I+I A+ K+  I++A  L + ++     P P  Y P+I G+ + G+ ++A 
Sbjct: 854 CKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAM 913

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM      PN  +Y +LI   G+ G    A +    M + G+ P  + + ++ + L
Sbjct: 914 KIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECL 973

Query: 308 KNCGKHDLA 316
              G+ D A
Sbjct: 974 FMTGRVDDA 982



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 136/311 (43%), Gaps = 2/311 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           N+  +P+T + ++E    HG V++   VF+        +    Y ++  AL        A
Sbjct: 117 NIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQA 176

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
              + +M + GFV +  +Y  L+      G  +EA +  + M  +G  P ++    L+  
Sbjct: 177 PFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVA 236

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L       +   ++ +M   G   ++ T+   I  + ++G ++    +  ++   G   D
Sbjct: 237 LGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPD 296

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V TY +LI A+  AG +D+A  L   +    HKP    Y  ++      G  +    F+S
Sbjct: 297 VVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWS 356

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM+  G+ P+   YT+L+    + G+  +A + L  M   G+ P    ++ +  GL N  
Sbjct: 357 EMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLR 416

Query: 312 KHDLAEKIELL 322
           + D  E +EL 
Sbjct: 417 RLD--EALELF 425



 Score = 80.9 bits (198), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 1/251 (0%)

Query: 58   LLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            L+  LC+ K    A  L  +  +  G  P   +Y  L++          A +   EM + 
Sbjct: 758  LIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNA 817

Query: 117  GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
            G  P +   +LL+     +  ++   ++ N+M+ +G   ++ T N +I  + KS  +   
Sbjct: 818  GCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKA 877

Query: 177  VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            +++YY +          TY  LI  + KAG  +EA ++   + +   KP  ++Y  +I G
Sbjct: 878  LDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILING 937

Query: 237  MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
              + G  + A   F  M  +G  P+   YT+L+      GR  +A +Y  E+   GL P 
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPD 997

Query: 297  SRCFDLVTDGL 307
            +  ++L+ +GL
Sbjct: 998  TVSYNLMINGL 1008



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 139/313 (44%), Gaps = 5/313 (1%)

Query: 11  YNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
           +N  +SP   T +++++ + K G +D A ++  +  +  C+  +++ NSL+  L +    
Sbjct: 499 HNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRV 558

Query: 69  HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
             A+ +  R+      P   TY IL+      GK+ +A +    M + G  P     + L
Sbjct: 559 DEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNAL 618

Query: 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188
           +  L     ++ A +M  +M       D+ T+N++I  + K G   +    Y+ + K  L
Sbjct: 619 LDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMKKF-L 677

Query: 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLV-EDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
             D  T   L+P V K G +++A +++   V + G +    ++  +++ +    + ++A 
Sbjct: 678 SPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAI 737

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE-MGLTPISRCFDLVTDG 306
            F   +       +  +   LI +  +  + ++A     + T+ +G  P    ++ + DG
Sbjct: 738 SFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDG 797

Query: 307 LKNCGKHDLAEKI 319
           L  C   + A K+
Sbjct: 798 LLGCNITEAALKL 810



 Score = 74.3 bits (181), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 119/296 (40%), Gaps = 3/296 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+    +K   L+ +  T +++I   GK G +  A+++F       C    + +N+LL  
Sbjct: 562 WQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDC 621

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  +  RM      PD  TY  ++      G+   A  F  +M  K  +P 
Sbjct: 622 LCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK-KFLSPD 680

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 L+ G++  G +E A ++V + + Q G     + +  L+E I    E+E  +   
Sbjct: 681 HVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILIEAEIEEAISFA 740

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFR 239
             +    +C D +    LI  + K     +A +L     +  G  P P  Y  ++ G+  
Sbjct: 741 EGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLG 800

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               + A   F EMK  G  PN   Y +L+   G+  R  E      EM   G  P
Sbjct: 801 CNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKP 856



 Score = 38.5 bits (88), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 12   NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            N  +SP+  T + +I  FG  G+VD A ++F +      +  V  YN+L+    +     
Sbjct: 1026 NRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKD 1085

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVN 95
             A+++ ++M+  G  P+  T+A L N
Sbjct: 1086 RAFSVFKKMMIVGCSPNAGTFAQLPN 1111


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 122/276 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  +  VF+    +  +  V+ +N+L+            + L   M 
Sbjct: 139 FNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMH 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM EA E   EM DKG  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++    +   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++E+  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P+   YTM+I    + G     +  L EM   G  P
Sbjct: 379 PDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVP 414



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 8/273 (2%)

Query: 54  LYNSLLFALC---EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            +N L+   C   E++L    +  IR+    G  P   ++  L+N +   G + +     
Sbjct: 138 FFNILMHRFCKEGEIRLSQSVFDAIRKW---GLRPSVVSFNTLMNGYIRQGDLDKGFRLK 194

Query: 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
             M   G  P V    +L+ GL     ++ A ++  +M+ +G V +  TF +LI+  CK+
Sbjct: 195 SAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           G+V+  +E+Y  +    L  D+ TY  LI  + K G + +A  L++ +   G KP    Y
Sbjct: 255 GKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITY 314

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G  + G  + AF +   M  +    +   YT LI+   + GR V+A   L EM  
Sbjct: 315 TTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 374

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           +GL P S  + ++ +    C K D+    +LL+
Sbjct: 375 VGLKPDSGTYTMIINEF--CKKGDVWTGSKLLK 405



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 119/256 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + ++ + L  S  + + ++  + + G +D    + +   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +GK+  A E  ++M  +  +P +   
Sbjct: 220 SKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++N+M  +G   D  T+ +LI+  CK G++E   E    + +
Sbjct: 280 NTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIE 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  GH P+
Sbjct: 400 GSKLLKEMQRDGHVPS 415



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +   + ++
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEIL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G++R +Q     +   G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ + M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 KGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A    +EM +KG  
Sbjct: 249 DGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M E  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            ++++ G+   L  FN L+   CK GE+     ++ ++ K GL   V ++  L+    + 
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQ 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D+ FRL   +   G +P    Y+ +I G+ +  + D+A   F EM  KG  PN   +
Sbjct: 185 GDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + G+   A     +M    L+P    ++ +  GL  C K DL +   L+ E+
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQARNLINEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E   +    N +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  PD  TY +++N +C  G +    + L+EM   G  P V
Sbjct: 373 LSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSV 416


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 141/307 (45%), Gaps = 5/307 (1%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ MK   +S S      +I  + + GL + A+++F +   F CQ  V +YN LL A+  
Sbjct: 102 LQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLS 161

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F     +   M R G  P+  TY IL+ A C + ++  A + L EMS+KG  P V  
Sbjct: 162 ENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVS 221

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++  +   G +E A+++  +     F  ++  +N+LI   C+  +V+    +   + 
Sbjct: 222 YTTVISSMSKLGKVEEARELSIR-----FQPNVSVYNALINGFCREYKVKEVFLLLGQMV 276

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + G+  +V TY  +I ++S  G ++ A  +   +   G  P    +  ++KG F RG+  
Sbjct: 277 EKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVL 336

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A   ++ M  +G  PN   Y  LI      G+  EA +   +M   G +P    +  + 
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALI 396

Query: 305 DGLKNCG 311
           DG    G
Sbjct: 397 DGFAKAG 403



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 7/304 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I    K G V+ A E+     +   Q  V +YN+L+   C        + L+ +M
Sbjct: 221 SYTTVISSMSKLGKVEEAREL-----SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQM 275

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG  P+  TY+ ++++    G +  A     +M  +G +P V     L++G    G +
Sbjct: 276 VEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRV 335

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + N+M ++GF  ++  +N+LI  +C  G++   V +   + + G   +VSTY  L
Sbjct: 336 LEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGAL 395

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +KAG +  A  + + ++ +G  P   +Y  ++  + R   F  A+    +M     
Sbjct: 396 IDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC 455

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           PPN   +   I      GR   A N   +M + G +P  + ++ V DGL    ++ + E 
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGL--LKENRIKEA 513

Query: 319 IELL 322
           +EL+
Sbjct: 514 LELV 517



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 127/268 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y++++ +L  +     A A+  +M  +G  P+  T+  L+  +   G++ EA     
Sbjct: 284 VITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWN 343

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M+++GF P V   + L+ GL + G +  A  + +KM + G   ++ T+ +LI+   K+G
Sbjct: 344 RMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAG 403

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++    E++  +   G   +V  Y  ++  + ++ M  +A+ L+  +  D   P    + 
Sbjct: 404 DLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFN 463

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             IKG+   G+ + A   F +M+  G  PN   Y  ++    +  R  EA   + EM E 
Sbjct: 464 TFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEK 523

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+      ++ +  G  N GK + A K+
Sbjct: 524 GMELNLVTYNTIFGGFCNVGKFEEALKL 551



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 121/257 (47%), Gaps = 1/257 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           S +  T   +I+ F K G +  A E++NK     C   V++Y S++  LC   +F  A++
Sbjct: 386 SPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWS 445

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           LI +M      P+  T+   +   C SG++  A     +M   G +P ++  + ++ GLL
Sbjct: 446 LIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLL 505

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               ++ A ++V +M ++G  L+L T+N++    C  G+ E  +++   +   G+  D  
Sbjct: 506 KENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAI 565

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-PFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           TY  L  A    G +  A +LL  L   G   P  + Y  ++ G+  +   ++A  +  +
Sbjct: 566 TYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDK 625

Query: 253 MKIKGHPPNRPVYTMLI 269
           M  +G   N   +  L+
Sbjct: 626 MLNEGICLNAATWNALV 642



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 119/274 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++ +   G V  A+ ++N+      +  V+ YN+L+  LC       A ++  +M
Sbjct: 321 TFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM 380

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G  P+  TY  L++ +  +G +  A E   +M   G  P V     +V  L  +   
Sbjct: 381 ERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMF 440

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++ KM       +  TFN+ I+ +C SG VE  + ++  + + G   ++ TY  +
Sbjct: 441 SQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEV 500

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K   I EA  L+  + E G +     Y  I  G    G+F++A     +M + G 
Sbjct: 501 LDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGV 560

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            P+   Y  L       G+   A   L +++  G
Sbjct: 561 KPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGG 594



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 127/293 (43%), Gaps = 3/293 (1%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I     HG +  AV V +K     C   V  Y +L+    +     GA  +  +M+  G
Sbjct: 360 LIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNG 419

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+   Y  +VN  C S    +A   +++MS     P     +  ++GL  +G +E A 
Sbjct: 420 CIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAI 479

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            +  +M + G   +++T+N +++ + K   ++  +E+   + + G+  ++ TY  +    
Sbjct: 480 NLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGF 539

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPN 261
              G  +EA +LL  ++  G KP    Y  +      +G+   A     ++   G   P 
Sbjct: 540 CNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPE 599

Query: 262 RPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              YT +L  +C + G   EA  YL +M   G+   +  ++ +  GL N   H
Sbjct: 600 VAAYTSLLWGICNQIG-VEEAVLYLDKMLNEGICLNAATWNALVRGLFNSLGH 651



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 117/273 (42%), Gaps = 30/273 (10%)

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
           G   L+++M  +G    +  +  ++N +   G   +A +    + + G  P V+  + L+
Sbjct: 97  GVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLL 156

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             +L+    +  + + + M + G   ++ T+N L++ +CK+  V+   ++   +   G  
Sbjct: 157 DAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCE 216

Query: 190 ADVSTYKILIPAVSKAGMIDEA------------------------------FRLLHNLV 219
            DV +Y  +I ++SK G ++EA                              F LL  +V
Sbjct: 217 PDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMV 276

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           E G  P    Y+ +I  +   G  + A   +++M ++G  PN   +T L+      GR +
Sbjct: 277 EKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVL 336

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           EA N    M E G  P    ++ +  GL + GK
Sbjct: 337 EALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGK 369



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 1/199 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  IE M   N   +  T +  I+     G V+ A+ +F +   + C   +  YN +L  
Sbjct: 444 WSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDG 503

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           L +      A  L+  M  KG   +  TY  +   +C+ GK  EA + L +M   G  P 
Sbjct: 504 LLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPD 563

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMY 180
               + L       G +++A Q+++K+   G +V ++  + SL+  IC    VE  V   
Sbjct: 564 AITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYL 623

Query: 181 YSVCKLGLCADVSTYKILI 199
             +   G+C + +T+  L+
Sbjct: 624 DKMLNEGICLNAATWNALV 642



 Score = 51.6 bits (122), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 69/163 (42%)

Query: 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218
           T+  +IE + +  +V+    +   +   G+      +  +I    + G+ ++A ++ + +
Sbjct: 81  TYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRI 140

Query: 219 VEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            E G +P   +Y  ++  M    +F      +S MK  G  PN   Y +L+    +  R 
Sbjct: 141 REFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRV 200

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             A   LVEM+  G  P    +  V   +   GK + A ++ +
Sbjct: 201 DGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSI 243


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 131/287 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++   +  + L + M 
Sbjct: 143 FNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQ 202

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +  E   EM D G  P       L+ G    G ++
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVD 262

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 263 LAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 323 DGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           P    YTM+I    + G     +  + EM   G  P    ++++ +G
Sbjct: 383 PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 119/264 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G ++    +     A   Q  V  Y+ L+  LC+ 
Sbjct: 164 DAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKE 223

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                   L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 224 SKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTY 283

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 284 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIK 343

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 344 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 403

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLI 269
                 EM+  G+ P+   Y +L+
Sbjct: 404 GSKLMKEMQRDGYVPSVVTYNVLM 427



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S II  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 73  FSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 132

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++C  G++R AQ     ++  G  P V   + L+ G +  G L 
Sbjct: 133 ECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLN 192

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++   M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 193 EXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLI 252

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 253 DGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 312

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 313 PDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 372

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 373 LREMLSVGLK 382



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I    K   +D+  E+F++          + + +L+   C+      A  + ++M
Sbjct: 212 TYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 271

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   PD  TY  L+   C  G +++AQ+ + EMS KG  P       L+ G    G L
Sbjct: 272 LSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDL 331

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E+A +   +MIK+   LD   + +LI  +C+ G      +M   +  +GL  ++ TY ++
Sbjct: 332 ETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMI 391

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           I    K G +    +L+  +  DG+ P    Y  ++ G
Sbjct: 392 INEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ ++ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 69  DIYVFSGIITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 128

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ + CK GE+     ++ ++ K GL   V ++  L+    K 
Sbjct: 129 EESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKL 188

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G ++E FRL   +   G +P    Y+ +I G+ +  + DD    F EM   G  PN   +
Sbjct: 189 GDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTF 248

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 249 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGL--CKKGDLKQAQDLIDEM 306

Query: 325 SLRSV 329
           S++ +
Sbjct: 307 SMKGL 311



 Score = 51.2 bits (121), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 59/127 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 303 IDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQ 362

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  ++R M+  G  P+  TY +++N +C  G +    + ++EM   G+ P V  
Sbjct: 363 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 422

Query: 125 RDLLVQG 131
            ++L+ G
Sbjct: 423 YNVLMNG 429


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I+ F K G  + A +V N  +A       + YN L+ ALC+      A  +   M
Sbjct: 409 TYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEM 468

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD  T+  L+   C + KM EA    ++M  +G        + L+   L    +
Sbjct: 469 SSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELI 528

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++V +M  +G  LD  T+N LI+ +CK+G  E C+ +   +    +   +++  IL
Sbjct: 529 QQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNIL 588

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +  + G +++A + L ++++ G  P    Y  +I G+ + G+F +A   F+ ++ KG 
Sbjct: 589 INSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGI 648

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y  LI+     G F +A   L +    G  P
Sbjct: 649 HPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIP 685



 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 144/335 (42%), Gaps = 45/335 (13%)

Query: 19  TLSLIIEEFGKHGL-----VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           T   +I+ +  HGL     VD A  + +K    N     +LYN+L+        F  A  
Sbjct: 302 TADALIQGYLMHGLCRMGKVDEARAMLSKIPNPN----TVLYNTLINGYVVSGRFEEAKD 357

Query: 74  LI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           L+ + M+  GF PD  T+ I+++  C  G +  A EFL EM  KGF P V    +L+ G 
Sbjct: 358 LLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGF 417

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G+ E A ++VN M  +G  L+   +N LI  +CK G+++  ++MY  +   G   D+
Sbjct: 418 CKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDI 477

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI  + K   ++EA  L  +++ +G       Y  +I    R      A     E
Sbjct: 478 YTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGE 537

Query: 253 MKIKGHPPNRPVYTMLI-TMCGRG----------------------------------GR 277
           M+ +G P +   Y  LI  +C  G                                  G+
Sbjct: 538 MRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGK 597

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             +A  +L +M + GLTP    ++ + +GL   G+
Sbjct: 598 VNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGR 632



 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 137/310 (44%), Gaps = 9/310 (2%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +SP   T  ++++ F     VD+A  +    T   C    ++Y  L+ AL E    + A 
Sbjct: 196 ISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAM 255

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G  PD +T+  +++  C +G++ EA +    M  + F      +  L+ GL
Sbjct: 256 KLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGL 315

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY-SVCKLGLCAD 191
              G ++ A+ M++K+     VL    +N+LI     SG  E   ++ Y ++   G   D
Sbjct: 316 CRMGKVDEARAMLSKIPNPNTVL----YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPD 371

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             T+ I+I  + K G +  A   L  +V+ G +P    Y  +I G  ++G F++A    +
Sbjct: 372 AFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVN 431

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M  KG   N   Y  LI    + G+  +A     EM+  G  P    F+ +  GL  C 
Sbjct: 432 SMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGL--CK 489

Query: 312 KHDLAEKIEL 321
              + E + L
Sbjct: 490 NDKMEEALGL 499



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 5/260 (1%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  VF    +      V  +  ++ A C V     A +L+R M + G VP+   Y +L++
Sbjct: 184 APNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIH 243

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A   + ++ EA + L+EM   G  P V+  + ++ GL  AG +  A ++ ++M+ + F  
Sbjct: 244 ALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTA 303

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D      L+  +C+ G+V+    M   +       +   Y  LI     +G  +EA  LL
Sbjct: 304 DALIQGYLMHGLCRMGKVDEARAMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLL 359

Query: 216 H-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
           + N+V  G +P    +  +I G+ ++G    A  F  EM  KG  PN   YT+LI    +
Sbjct: 360 YKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCK 419

Query: 275 GGRFVEAANYLVEMTEMGLT 294
            G F EA+  +  M+  GL+
Sbjct: 420 QGHFEEASKVVNSMSAKGLS 439



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 123/268 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K +  M    LS++    + +I    K G + +A++++ + ++  C+  +  +NSL++ L
Sbjct: 428 KVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGL 487

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A  L R M+ +G + +  TY  L++A+     +++A + + EM  +G     
Sbjct: 488 CKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDN 547

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              + L++ L   G  E    ++ +M  +     + + N LI + C++G+V   ++    
Sbjct: 548 ITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRD 607

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + GL  D+ TY  LI  + K G   EA  L + L   G  P    Y  +I      G 
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL 667

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           F+DA     +    G  PN   +++LI 
Sbjct: 668 FNDACQLLFKGVSNGFIPNEITWSILIN 695



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 89/197 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F +  L+  A ++  +     C    + YN L+ ALC+         LI +M
Sbjct: 514 TYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQM 573

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +   P   +  IL+N++C +GK+ +A +FL++M  +G  P +   + L+ GL   G  
Sbjct: 574 FGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRF 633

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  + N +  +G   D  T+N+LI   C  G      ++ +     G   +  T+ IL
Sbjct: 634 QEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSIL 693

Query: 199 IPAVSKAGMIDEAFRLL 215
           I    K     E F +L
Sbjct: 694 INYFVKNNSDSEQFTIL 710



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 152/373 (40%), Gaps = 67/373 (17%)

Query: 2   WKTIELMKPYNLS--------VSPQTLSLIIEE----------FGKHGLVDNAVEVFNKC 43
           W+   L+KPY+L         ++P  L  ++E           F K GL    +  F+  
Sbjct: 40  WEN--LLKPYDLKHLQRSLNPITPSQLCKLLELPLDVPTSMDLFEKAGLQRGYIHSFH-- 95

Query: 44  TAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103
                     +Y  L+  L  V  F     L+++M  +G V  +  + +++  +  +G  
Sbjct: 96  ----------VYYLLIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLFILIMRYYGKAGLP 145

Query: 104 REAQEFLQEMSD-KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162
            +A   L +M     F P  +  +++++ L+     + A  +   M+ +G    + TF  
Sbjct: 146 GQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGV 205

Query: 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222
           +++  C   EV+    +   + K G   +   Y++LI A+S+   ++EA +LL  +   G
Sbjct: 206 VMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMG 265

Query: 223 HKPFPSLYAPIIKGMFRRGQFDDAF---------CFFSEMKIKGH--------------- 258
            +P    +  +I G+ + G+  +A           F ++  I+G+               
Sbjct: 266 CEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEAR 325

Query: 259 -------PPNRPVYTMLITMCGRGGRFVEAANYLVE-MTEMGLTPISRCFDLVTDGLKNC 310
                   PN  +Y  LI      GRF EA + L + M   G  P +  F+++ DGL  C
Sbjct: 326 AMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGL--C 383

Query: 311 GKHDLAEKIELLE 323
            K  L   +E L+
Sbjct: 384 KKGYLVSALEFLD 396


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 138/297 (46%), Gaps = 2/297 (0%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + + G++ +A  VF       C +    Y +LL  L    +   A A+   M      PD
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
              YA +V+  C +G+  EA+  L+E    GF P +   + L+ G  NAG +E A ++  
Sbjct: 177 THVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFE 236

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M       ++ T+  LI  +CKSG+VE  + ++  + + GL  +V TY  LI      G
Sbjct: 237 GMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEG 296

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            +  AFRLLH +  +G  P    ++ +I  + +R + ++A  F   +  KG   N  VYT
Sbjct: 297 HLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYT 356

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            LI    + G+   A   + +M   G  P +  +  + DGL  C +  L++   +LE
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL--CRQKKLSQATLMLE 411



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+ +   G +++A++VF       C   V  Y  L+  LC+      A  L  RM+  G
Sbjct: 218 LIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG 277

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
             P+  TY  L+   C+ G ++ A   L  M   G  P      +L+  L     +E A+
Sbjct: 278 LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQ 337

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
             +  ++K+G  ++   + SLI+ +CK+G+++   E+   +   G   D  +Y  LI  +
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGL 397

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            +   + +A  +L +++E G +  P  Y  II  + R    +     F +M   G  P+ 
Sbjct: 398 CRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDI 457

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
             YT+ +      GR  +A + +V+M + G+ P    ++ +  G  N G
Sbjct: 458 VTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLG 506



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 134/277 (48%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G+V  A+ VF    A +C     +Y +++  LCE      A  L+   +  GF P+   Y
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L++ +C++G+M  A +  + M     +P VR    L+ GL  +G +E A  + ++M++
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            G   ++ T+ +LI+  C  G ++    + + +   GL  +  T+ +LI A+ K   ++E
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A   L +LV+ G K    +Y  +I G+ + G+ D A     +M  +G  P+   Y+ LI 
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
              R  +  +A   L +M E G+      + ++ D L
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 132/293 (45%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  E M     S + +T + +I    K G V+ A+ +F++      +  V+ Y +L+   
Sbjct: 233 KVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQ 292

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C       A+ L+  M   G VP+  T+++L++A C   K+ EAQ FL  +  KG     
Sbjct: 293 CNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNE 352

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ GL   G +++A +++ KMI +GFV D  +++SLI+ +C+  ++     M   
Sbjct: 353 VVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLED 412

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+ A   TY I+I  + +    +   ++   ++  G  P    Y   ++     G+
Sbjct: 413 MMEKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGR 472

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +DA     +M  +G  PN   Y  LI      G   +A +    M   G  P
Sbjct: 473 MEDAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKP 525



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 143/306 (46%), Gaps = 3/306 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ + LM+   L  +  T S++I+   K   V+ A            +   ++Y SL+  
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDG 361

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  L+++MI +GFVPD  +Y+ L++  C   K+ +A   L++M +KG    
Sbjct: 362 LCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQAS 421

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +++  L+     E  K++ +KMI  G   D+ T+   + + C+ G +E    M  
Sbjct: 422 PVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIV 481

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G+  ++ TY  LI   +  G++ +AF     +V  G KP    Y  +++ + ++ 
Sbjct: 482 QMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKS 541

Query: 242 QFDDAFCFF--SEMK-IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
             D++   +  ++MK ++    +  V+ +LI    + G   E ++ L  M E G  P + 
Sbjct: 542 SSDNSVDIWKIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNT 601

Query: 299 CFDLVT 304
              ++T
Sbjct: 602 INAMIT 607



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 118/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y S +   C   +   A  +   M  +G +    TY  L++    +G +REA      M 
Sbjct: 110 YTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMR 169

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                P       +V GL  AG  E A+ ++ + +  GF  ++  +N+LI+  C +GE+E
Sbjct: 170 ADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEME 229

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             ++++  +       +V TY  LI  + K+G ++ A  L   +VE G +P    Y  +I
Sbjct: 230 HALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
           +G    G    AF     M+  G  PN   +++LI    +  +  EA  +L  + + G+ 
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVK 349

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
                +  + DGL   GK D A+++
Sbjct: 350 VNEVVYTSLIDGLCKTGKIDAADEL 374



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 96/261 (36%), Gaps = 39/261 (14%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL AL   ++F    +L  RM  +      RTY  L+NA+C                 
Sbjct: 45  NTLLMALARHRMFPDMESLASRMPARNL----RTYTTLINAYCL---------------- 84

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
                              AG + +AKQ +  ++  G   D   + S +   C++G +  
Sbjct: 85  -------------------AGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTH 125

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
              ++  +   G      TY  L+  +  AGM+ EA  +   +  D   P   +YA ++ 
Sbjct: 126 ACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVH 185

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+   G+ ++A     E    G  PN  VY  LI      G    A      M     +P
Sbjct: 186 GLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSP 245

Query: 296 ISRCFDLVTDGLKNCGKHDLA 316
             R +  +  GL   GK + A
Sbjct: 246 NVRTYTELIHGLCKSGKVERA 266


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 2/317 (0%)

Query: 5   IELMKPYNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           I +M     +  P  +S   +I  F K G V  A  +F K         V+  NS++  L
Sbjct: 238 IHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGL 297

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+V+    A A++++MI +  +P+  TY  L++ + SSG+  EA   L+EMS  G  P V
Sbjct: 298 CKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNV 357

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
               +L+  L  +G    A+++ N MI+ G   +  T+ SL+      G +     +   
Sbjct: 358 VTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDL 417

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G+      + I I A  K G +DEA    + + + G  P    Y  +I G+ + G+
Sbjct: 418 MVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGR 477

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            DDA   F +M   G  P+   +  LI      G++ +A     EM + G+ P    F+ 
Sbjct: 478 LDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNS 537

Query: 303 VTDGLKNCGKHDLAEKI 319
           + D L   GK   A K+
Sbjct: 538 MIDKLFKEGKVTEARKL 554



 Score =  103 bits (258), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 131/293 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  +   G    AV +  + +    +  V+ Y+ L+  LC+  L   A  +   M
Sbjct: 324 TYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSM 383

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+ G  P+  TY  L++ + + G + +       M   G  P     ++ +      G L
Sbjct: 384 IQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRL 443

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A    NKM +QGF+ D+  + ++I+ +CK G ++  +  +  +   GL  D+ T+  L
Sbjct: 444 DEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTL 503

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +  G  ++A  L + +++ G  P  + +  +I  +F+ G+  +A   F  M   G 
Sbjct: 504 IHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGA 563

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            PN   Y  +I      G   E    L +M  +GL P +  F+ + DG+ + G
Sbjct: 564 KPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG 616



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 113/265 (42%), Gaps = 3/265 (1%)

Query: 55  YNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +  LL  LC  K    A  ++ RRM   G  PD  +Y  L+   C+  K  EA E +  M
Sbjct: 182 FTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMM 241

Query: 114 SDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           ++ G N  P V     ++ G    G +  A  +  KM+  G   ++ T NS+I+ +CK  
Sbjct: 242 AEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQ 301

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++    +   +    +  + +TY  LI     +G   EA R+L  +  DG +P    Y+
Sbjct: 302 AMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYS 361

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  + + G   +A   F+ M   G  PN   Y  L+      G  V+  N    M + 
Sbjct: 362 MLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQN 421

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLA 316
           G+ P    F++       CG+ D A
Sbjct: 422 GMRPGRHVFNIEIYAYCKCGRLDEA 446



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 104/248 (41%), Gaps = 16/248 (6%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +LM    +       ++ I  + K G +D A   FNK         ++ Y +++  LC++
Sbjct: 416 DLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKI 475

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A +   +MI  G  PD  T+  L++ +   GK  +A+E   EM D+G  P V   
Sbjct: 476 GRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTF 535

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++  L   G +  A+++ + M + G   ++ ++N++I     +GEV   +++   +  
Sbjct: 536 NSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLL 595

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +GL     T+                  LL  +V  G KP       +I      G+ +D
Sbjct: 596 IGLKPTAVTFNT----------------LLDGMVSMGLKPDVVTCKTLIDSCCEDGRIED 639

Query: 246 AFCFFSEM 253
               F EM
Sbjct: 640 ILTLFREM 647



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 105/266 (39%), Gaps = 41/266 (15%)

Query: 71  AYALIRRMIRKG---FVPDKRTYAILVNAWCSSGKMR----------------EAQEF-- 109
           A ++  RM R G     PD  T+ IL++  C +G +                 +A  F  
Sbjct: 125 AVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTP 184

Query: 110 ------------------LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
                             L+ M + G  P V     L++GL      E A ++++ M + 
Sbjct: 185 LLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAED 244

Query: 152 GFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           G     ++ ++ ++I    K G+V     ++  +   G+  +V T   +I  + K   +D
Sbjct: 245 GDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD 304

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
           +A  +L  ++++   P  + Y  +I G    GQ+ +A     EM   G  PN   Y+MLI
Sbjct: 305 KAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLI 364

Query: 270 TMCGRGGRFVEAANYLVEMTEMGLTP 295
               + G   EA      M + G  P
Sbjct: 365 DCLCKSGLHAEAREIFNSMIQSGQKP 390


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  115 bits (287), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS+     + +I+   K G +  A +   +    N     ++YN  +  LC +  F  A 
Sbjct: 515 LSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAK 574

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           + +  M   G  PD+ TY  ++ + C  G+  +A + L EM      P +   + LV GL
Sbjct: 575 SFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGL 634

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E AK ++N+M+  GF     T   +++   +S  ++  ++++  +   GL AD+
Sbjct: 635 FGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + Y  L+  +   GM  +A  +L  ++  G  P    +  +I G  +    D+AF  +++
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           M  +   PN   +  L+      GR  EA   L+EM + GL P +  +D++  G
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATG 808



 Score =  100 bits (249), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 2/294 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++  GK G  D   +      + N     + Y  L+ ALC+      A  ++  M
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM 405

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ ++N +   G + +A E+ + M ++G NP V     L+ G       
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A ++ + M+ +G  ++    +SL+  + ++G++E  + ++      GL  D   Y  L
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +  AF+    L++    P   +Y   I  +   G+F +A  F +EM+  G 
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P++  Y TM+++ C R G   +A   L EM    + P    ++ +  GL   G
Sbjct: 586 KPDQSTYNTMIVSHC-RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTG 638



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 1/300 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ ++    ++G VD A  + ++    +    V+ +N+L+   C V     A ++  RM
Sbjct: 137 TVNTLLAGLCRNGQVDAAAALADRGGGIHALD-VIGWNTLIAGYCRVGDTPAALSVADRM 195

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   D   Y  LV  +C +G++  A+  L  M + G +P V      +        +
Sbjct: 196 TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGV 255

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M++ G +LD+ T ++L+  +C+ G       ++  + K+G   +  TY  L
Sbjct: 256 EEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTL 315

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +++KAG   E   LL  +V  G       Y  ++  + ++G+ D+             
Sbjct: 316 IDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT+LI    +     EA   L+EM E  ++P    F  V +G    G  D A +
Sbjct: 376 SPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE 435



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 134/317 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++ ++    + +  ++ YN+L+  L     
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGA 639

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+  GF P   T+  ++ A   S ++    +  + M + G +  +   + 
Sbjct: 640 VEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT 699

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q L   G    A  ++ +M+  G   D  TFN+LI   CKS  ++     Y  +    
Sbjct: 700 LLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +++T+  L+  +   G I EA  +L  + + G +P    Y  +  G  ++    +A 
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAM 819

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             + EM  KG  P    Y  LI+   + G   +A     +M + G+ P S  +D++  G 
Sbjct: 820 RLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGW 879

Query: 308 KNCGKHDLAEKIELLEV 324
            +  +   ++     E+
Sbjct: 880 YDLAREQKSQNTYFTEI 896



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 34/289 (11%)

Query: 56  NSLLFALCEVKLFHGAYALIR---------------------------RMIRKGFVPDKR 88
           N+LL++ C ++L   A AL+R                            M ++G   D  
Sbjct: 77  NALLYSHCRLRLLRPAIALLRSSRPTTVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGV 136

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           T   L+   C +G++  A      ++D+G       V G + L+ G    G   +A  + 
Sbjct: 137 TVNTLLAGLCRNGQVDAA----AALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVA 192

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M  QG  +D+  +N+L+   C++G+V+    +   + + G+  +V+TY   I    + 
Sbjct: 193 DRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT 252

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
             ++EAF L   +V +G        + ++ G+ R G+F +A+  F EM   G  PN   Y
Sbjct: 253 KGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTY 312

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             LI    + GR  E  + L EM   G+      +  + D L   GK D
Sbjct: 313 CTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 6/276 (2%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           N+LL  LC       A AL  R    G +   D   +  L+  +C  G    A      M
Sbjct: 139 NTLLAGLCRNGQVDAAAALADR---GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRM 195

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + +G    V G + LV G   AG +++A+ +++ M + G   ++ T+   I   C++  V
Sbjct: 196 TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGV 255

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   ++Y  + + G+  DV T   L+  + + G   EA+ L   + + G  P    Y  +
Sbjct: 256 EEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTL 315

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + + G+  +      EM  +G   +   YT L+   G+ G+  E  + L       L
Sbjct: 316 IDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +P    + ++ D L      D AE++ LLE+  +S+
Sbjct: 376 SPNGVTYTVLIDALCKAHNVDEAEQV-LLEMEEKSI 410



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL-------------------- 62
           +I  + + G    A+ V ++ TA      V+ YN+L+                       
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 63  ---------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                          C  K    A+ L   M+R G + D  T + LV   C  G+  EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +EM   G  P       L+  L  AG  +    ++ +M+ +G V+DL T+ +L++ +
Sbjct: 295 ALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWL 354

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G+ +   +         L  +  TY +LI A+ KA  +DEA ++L  + E    P  
Sbjct: 355 GKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNV 414

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             ++ +I G  +RG  D A  +   MK +G  PN   Y  LI
Sbjct: 415 VTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 160/396 (40%), Gaps = 73/396 (18%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   +  +  T +  I  + +   V+ A +++           V+  ++L+  LC 
Sbjct: 227 LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCR 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------- 117
              F  AYAL R M + G  P+  TY  L+++   +G+ +E    L EM  +G       
Sbjct: 287 DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVT 346

Query: 118 ----------------------------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                                        +P      +L+  L  A  ++ A+Q++ +M 
Sbjct: 347 YTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME 406

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++    ++ TF+S+I    K G ++   E    + + G+  +V TY  LI    K    D
Sbjct: 407 EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466

Query: 210 EAFRLLHNLVEDGHKP----FPSL-------------------------------YAPII 234
            A  + H+++ +G K       SL                               Y  +I
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLI 526

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+F+ G    AF F  E+  +   P+  VY + I      G+F EA ++L EM  MGL 
Sbjct: 527 DGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           P    ++ +   + +C K + A+ ++LL E+ + S+
Sbjct: 587 PDQSTYNTMI--VSHCRKGETAKALKLLHEMKMSSI 620



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            +MK   ++ +  T   +I+ F K    D A+EV++       +    + +SL+  L + 
Sbjct: 438 RMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQN 497

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL +     G   D   Y  L++    +G M  A +F QE+ D+   P     
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ +  L   G  + AK  + +M   G   D  T+N++I + C+ GE    +++ + +  
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  ++ TY  L+  +   G +++A  LL+ +V  G  P    +  +++   +  + D 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                  M   G   +  VY  L+ +    G   +A   L EM   G+ P +  F+ +  
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 306 G 306
           G
Sbjct: 738 G 738


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 126/271 (46%), Gaps = 8/271 (2%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y + + A CEV+   GA  L+ RM  +G       Y +L+   C + ++REA +    M
Sbjct: 199 VYTAGIRAYCEVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSM 258

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             +G          LV G      L+ A +M   M + GFV      + +++ + K G V
Sbjct: 259 LARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRV 318

Query: 174 EFCVEMYYSVCKLG---LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
           E   E +   C+LG   +  ++  Y  L+  + K GM  EA RL++ + + G +P    Y
Sbjct: 319 E---EAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTY 375

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           A +I  + +RG  DDA C    M+ KG       Y  LI  C +      A  +L EM E
Sbjct: 376 AILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVE 435

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
           +GLTP +  +  V  GL  C K DL+  +EL
Sbjct: 436 IGLTPNAASYSPVIAGL--CRKGDLSGAVEL 464



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 121/255 (47%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S    S +++   K G V+ A  +  +         +  YN+LL  +C+  +F  A  L+
Sbjct: 301 SEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLV 360

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M  KG  P++ TYAIL+++ C  G M +A   L  M +KG    V   + L+      
Sbjct: 361 NEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKK 420

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
             L+ A   +++M++ G   +  +++ +I  +C+ G++   VE++  + + G+  +  T+
Sbjct: 421 DDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTF 480

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    KA  +DEA RL + + E   +P    +  +I+G    G    AF  + +M  
Sbjct: 481 TALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMC 540

Query: 256 KGHPPNRPVYTMLIT 270
           +G  P+   Y  LI+
Sbjct: 541 RGLTPDNYTYRSLIS 555



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 127/277 (45%), Gaps = 1/277 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           +L+ ++  F + G +  A  V+N+   +  +  ++ +  +++A  +      +  L R M
Sbjct: 584 SLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREM 643

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG  PD   +  ++N +   G M +A     EM   G  P       LV  L  + +L
Sbjct: 644 KEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHL 703

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            SA+ +  +M+   F+ +  TFN  ++     G +E   ++Y+++ + G  A++ +   L
Sbjct: 704 SSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAKDLYFAMLQ-GFLANIVSVNTL 762

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K G I EA  L+    E+G  P    Y+ +I  + ++G  ++A   ++EM  KG 
Sbjct: 763 IKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGV 822

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            P+   Y +LI  C   G   +     ++M + G+ P
Sbjct: 823 KPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQP 859



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 128/292 (43%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           VS    +++I    K+  V  AV+V N   A       +   +L++  C  +    A  +
Sbjct: 230 VSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEM 289

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
              M R GFVP +   + +++     G++ EA     ++ +    P +   + L+  +  
Sbjct: 290 TGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCK 349

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G    A ++VN+M  +G   +  T+  LI ++CK G ++  + M   + + G+   V  
Sbjct: 350 NGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYP 409

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254
           Y  LI    K   +D A   L  +VE G  P  + Y+P+I G+ R+G    A     +M 
Sbjct: 410 YNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMA 469

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
            KG   N   +T LI    +  +  EA+    +MTE  L P    F+ V +G
Sbjct: 470 EKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEG 521



 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 140/340 (41%), Gaps = 35/340 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +  M    L  +  T +++I    K G++D+A+ + ++      +  V  YNSL+   
Sbjct: 358 RLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCC 417

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A   +  M+  G  P+  +Y+ ++   C  G +  A E  ++M++KG     
Sbjct: 418 CKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNT 477

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                L+ G   A  ++ A ++ NKM +     +  TFN++IE  C  G++    ++Y  
Sbjct: 478 YTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQ 537

Query: 183 VCKLGLCADVSTYKILIPAV------SKA-----------------------------GM 207
           +   GL  D  TY+ LI  +      SKA                             G 
Sbjct: 538 MMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGR 597

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           + EA+ + + +   G K     +  I+    ++   + +   F EMK KG  P+   +T 
Sbjct: 598 LTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTC 657

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           +I M  + G  V+A N   EM   G  P +  +  + + L
Sbjct: 658 MINMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNL 697



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 1/191 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI  G +P+  TY  LVN  C S  +  A+   +EM    F P     +  +      G 
Sbjct: 678 MIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGN 737

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE+AK +   M+ QGF+ ++ + N+LI+  CK G+++  +++     + G   D  +Y  
Sbjct: 738 LETAKDLYFAML-QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYST 796

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + K G I+EA  L + ++  G KP    Y  +I+     G+ D     + +M  KG
Sbjct: 797 VIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKG 856

Query: 258 HPPNRPVYTML 268
             PN   +  L
Sbjct: 857 VQPNWHTHRAL 867



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 119/307 (38%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+ +  + S +I    + G +  AVE+  K            + +L+   C+ K    A 
Sbjct: 438 LTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEAS 497

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L  +M      P++ T+  ++  +C  G +R+A +   +M  +G  P       L+ GL
Sbjct: 498 RLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGL 557

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                   AK+ V  +     VL+  +  +L+   C+ G +     ++  +   G   D+
Sbjct: 558 CLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDL 617

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            ++ I++ A  K    +++  L   + E G +P    +  +I    + G    A   + E
Sbjct: 618 ISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDE 677

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M   GH PN   YT L+    +      A     EM      P S  F+   D     G 
Sbjct: 678 MIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGN 737

Query: 313 HDLAEKI 319
            + A+ +
Sbjct: 738 LETAKDL 744



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 60/123 (48%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +GF+ +  +   L+  +C  G+++EA + +   ++ GF P       ++  L   G +  
Sbjct: 750 QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHELCKKGDINE 809

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++ N+M+ +G   D+  +N LI      GE + C+ +Y  + K G+  +  T++ L  
Sbjct: 810 AIELWNEMLYKGVKPDIVAYNILIRWCNIHGESDKCLGIYIDMVKKGVQPNWHTHRALFV 869

Query: 201 AVS 203
             S
Sbjct: 870 GTS 872


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 145/307 (47%), Gaps = 34/307 (11%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           II+ F K GLV+NA+ +F +      +   + YNSL+  LC       A  L+R M+ + 
Sbjct: 180 IIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRD 239

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            VP+  T+  L+NA+   GK  EA++F +EM  +  +P V   + ++ GL   G ++ AK
Sbjct: 240 IVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAK 299

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD----------- 191
           Q+++ M+ +G   D+ T+N+LI   CK+  V+   ++   + + GL  D           
Sbjct: 300 QILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGY 359

Query: 192 ---------------------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
                                + TY IL+  +     +++A  L  ++ +   +   + Y
Sbjct: 360 FQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTY 419

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV-EMT 289
             +I GM   G  +DA+  F  +  KG  P+   YT +I+   R  R  + A++L  +M 
Sbjct: 420 NIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCR-KRLWDKADFLYRKMQ 478

Query: 290 EMGLTPI 296
           E GL P+
Sbjct: 479 EDGLLPL 485



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 3/251 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T+S +I  F +   V  AV++ +K     C+  V++YN+++   C+  L + A  L  RM
Sbjct: 141 TVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRM 200

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G   D  TY  LV   C SG+  +A   +++M  +   P V     L+   +  G  
Sbjct: 201 ERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKF 260

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             AK+   +MI++    D+ T+NS+I  +C  G+V+   ++   +   G   DV TY  L
Sbjct: 261 LEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTL 320

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   +DE  +L+  + + G       +  II+G F+ G+ D A   FS M   G 
Sbjct: 321 INGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GS 377

Query: 259 PPNRPVYTMLI 269
            PN   Y++L+
Sbjct: 378 RPNIRTYSILL 388



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 117/265 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN ++  LC    F  A +++ +M++ G+ PD  T + L+N +C   ++  A + + +M 
Sbjct: 107 YNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKME 166

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +      V   + ++ G    G + +A  +  +M + G   D  T+NSL+  +C SG   
Sbjct: 167 EMRCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRS 226

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               +   +    +  +V T+  LI A  + G   EA +    ++     P    Y  +I
Sbjct: 227 DAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMI 286

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   GQ D+A      M  KG  P+   Y  LI    +  R  E    + EM++ GL 
Sbjct: 287 HGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLV 346

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +  F+ +  G    G+ D A++I
Sbjct: 347 VDTVTFNTIIQGYFQAGRPDAAQEI 371



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 3/208 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I     HG VD A ++ +      C   V+ YN+L+   C+ K       L+R M
Sbjct: 281 TYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREM 340

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G V D  T+  ++  +  +G+   AQE    M   G  P +R   +L+ GL     +
Sbjct: 341 SQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRM---GSRPNIRTYSILLYGLCYNWRV 397

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M K    LD+ T+N +I  +C  G VE   +++ S+   GL  DV TY  +
Sbjct: 398 EKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTM 457

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           I    +  + D+A  L   + EDG  P 
Sbjct: 458 ISGFCRKRLWDKADFLYRKMQEDGLLPL 485



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 130/297 (43%), Gaps = 1/297 (0%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           +D A+++F           ++ ++ LL  + + K +    +L   M   G   D  TY I
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           ++N  C   +   A   + +M   G+ P V     L+ G      +  A  +V+KM +  
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
             LD+  +N++I+  CK+G V   + ++  + + G+ AD  TY  L+  +  +G   +A 
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA 229

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
           RL+ ++V     P    +  +I    R G+F +A  F+ EM  +   P+   Y  +I   
Sbjct: 230 RLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGL 289

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
              G+  EA   L  M   G  P    ++ + +G     + D   K+ + E+S R +
Sbjct: 290 CMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKL-VREMSQRGL 345


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 124/249 (49%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           +C   V+ Y +++    +      AY     M+ +G +P+  TY+ ++ A C +  M +A
Sbjct: 194 DCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKA 253

Query: 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166
            E L  M   G  P  R  + +V G  ++G  + A   + KM   G   D+ T+NSL++ 
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226
           +CK+G      +M+ S+ K GL  +++TY  L+   +  G + E   LL  +V +G  P 
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286
             +++ +I    ++G+ D A   FS+M+ +G  P+   Y  +I +  + GR  +A  Y  
Sbjct: 374 HYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFE 433

Query: 287 EMTEMGLTP 295
           +M +  L+P
Sbjct: 434 QMIDERLSP 442



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 128/254 (50%), Gaps = 6/254 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K G +D A   +++         V+ Y+S++ ALC+ +    A  ++  M
Sbjct: 201 SYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSM 260

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G +P+ RTY  +V+ +CSSG+ +EA  FL++M   G  P V   + L+  L   G  
Sbjct: 261 VKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC 320

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV---CKLGLCADVSTY 195
             A++M + M K+G   ++ T+ +L++     G +   VEM+  +    + G+  +   +
Sbjct: 321 TEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL---VEMHGLLDLMVRNGIHPNHYVF 377

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI A +K G +D+A  +   + + G  P    Y  +I  + + G+ +DA  +F +M  
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 256 KGHPPNRPVYTMLI 269
           +   P   VY  LI
Sbjct: 438 ERLSPGNIVYNSLI 451



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 120/268 (44%), Gaps = 3/268 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110
            + +  LL  LC  K    A  ++ RRM + G +P+  +Y IL+   C   + +EA E L
Sbjct: 126 AIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELL 185

Query: 111 QEMSDKGFN--PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           Q M D G +  P V     ++ G    G L+ A    ++M+ +G + ++ T++S+I  +C
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALC 245

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K+  ++  +E+  S+ K G+  +  TY  ++     +G   EA   L  +  DG +P   
Sbjct: 246 KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVV 305

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++  + + G+  +A   F  M  +G  P    Y  L+      G  VE    L  M
Sbjct: 306 TYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 365

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              G+ P    F ++       GK D A
Sbjct: 366 VRNGIHPNHYVFSILICAYAKQGKVDQA 393



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 104/232 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II    K   +D A+EV               YNS++   C       A   +++M
Sbjct: 236 TYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY  L++  C +G+  EA++    M+ +G  P +     L+QG    G L
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGAL 355

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +++ M++ G   +   F+ LI    K G+V+  + ++  + + GL  D  TY  +
Sbjct: 356 VEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTV 415

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           I  + K+G +++A R    ++++   P   +Y  +I  +    ++D A  +F
Sbjct: 416 IGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYF 467



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 45/311 (14%)

Query: 61  ALCEVKLFHGAYALIR--RMIRKG---FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           AL +V     A A+ R  RM R G     P+  TY IL+ + C +G++      L  +  
Sbjct: 60  ALADVARHSPAAAVSRYNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIK 119

Query: 116 KGFN------------------------------------PPVRGRDLLVQGLLNAGYLE 139
           KGF                                     P V   ++L++GL +    +
Sbjct: 120 KGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQ 179

Query: 140 SAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            A +++  M   G     D+ ++ ++I    K G+++     Y+ +   G+  +V TY  
Sbjct: 180 EALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSS 239

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I A+ KA  +D+A  +L ++V++G  P    Y  I+ G    GQ  +A  F  +M   G
Sbjct: 240 IIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDG 299

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+   Y  L+    + GR  EA      MT+ GL P    +  +  G    G   L E
Sbjct: 300 VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGA--LVE 357

Query: 318 KIELLEVSLRS 328
              LL++ +R+
Sbjct: 358 MHGLLDLMVRN 368



 Score = 64.7 bits (156), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T + I+  +   G    A+    K  +   +  V+ YNSL+  LC+      A  +   
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M ++G  P+  TY  L+  + + G + E    L  M   G +P      +L+      G 
Sbjct: 330 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGK 389

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           ++ A  + +KM +QG   D  T+ ++I  +CKSG VE
Sbjct: 390 VDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVE 426



 Score = 39.7 bits (91), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTY 195
           E A+ + ++++++G    +   N  +  + +       V  Y  + + G   +  ++ TY
Sbjct: 36  EDARHVFDELLRRGRGASIYGLNCALADVARHSPAA-AVSRYNRMARAGADEVTPNLCTY 94

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF-CFFSEMK 254
            ILI +   AG +D  F  L N+++ G +     + P++KG+    +  DA       M 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
             G  PN   Y +L+       R  EA   L  M + G
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG 192



 Score = 38.9 bits (89), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 35/157 (22%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M   ++LM    +  +    S++I  + K G VD A+ VF+K                  
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSK------------------ 399

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                            M ++G  PD  TY  ++   C SG++ +A  + ++M D+  +P
Sbjct: 400 -----------------MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL 157
                + L+  L      + AK    K   + FV  L
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKDYFLKCWIEAFVWTL 479


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 141/302 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L     T + +I+ FGK G +D+ V  F +     C+  V+ YN+L+   C+ 
Sbjct: 154 EEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKF 213

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                     R M   G  P+  +Y+ LV+A+C  G M++A +F  +M   G  P     
Sbjct: 214 GKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTY 273

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+      G L  A ++ N+M++ G   ++ T+ +LI+ +C +  ++   E++  +  
Sbjct: 274 TSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT 333

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  ++++Y  LI    KA  +D A  LL+ L   G KP   LY   I G+    + + 
Sbjct: 334 AGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEA 393

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    +EMK  G   N  +YT L+    + G   E  + L EM E+ +      F ++ D
Sbjct: 394 AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 453

Query: 306 GL 307
           GL
Sbjct: 454 GL 455



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK + +    ++ + ++  F K G  D+    F        +  V  YN ++  +C+   
Sbjct: 86  MKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGD 145

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L   M  +G VPD  TY  +++ +   G++ +   F +EM D    P V   + 
Sbjct: 146 VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNA 205

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G L    +   +M   G   ++ ++++L++  CK G ++  ++ Y  + ++G
Sbjct: 206 LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVG 265

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +  TY  LI A  K G + +AFRL + +++ G +     Y  +I G+    +  +A 
Sbjct: 266 LVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAE 325

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             F +M   G  PN   Y  LI    +      A   L E+   G+ P
Sbjct: 326 ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKP 373



 Score = 95.1 bits (235), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 142/306 (46%), Gaps = 1/306 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L  +  T + +I+   K G + +A  + N+      +  V+ Y +L+  LC+ + 
Sbjct: 261 MRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER 320

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L  +M   G +P+  +Y  L++ +  +  M  A E L E+  +G  P +     
Sbjct: 321 MKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGT 380

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
            + GL +   +E+AK ++N+M + G   +   + +L++   KSG     + +   + +L 
Sbjct: 381 FIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELD 440

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDA 246
           +   V T+ +LI  + K  ++ +A    + +  D G +   +++  +I G+ +  Q + A
Sbjct: 441 IEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAA 500

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
              F +M  KG  P+R  YT L+    + G  +EA     +M E+G+      +  +  G
Sbjct: 501 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 560

Query: 307 LKNCGK 312
           L +C +
Sbjct: 561 LSHCNQ 566



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 130/322 (40%), Gaps = 7/322 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W T  +  P    V     S++I+     G+++ A++ F+K   F         N LL 
Sbjct: 49  LWSTRNVCVP-GFGVFDALFSVLID----LGMLEEAIQCFSKMKRFRVFPKTRSCNGLLH 103

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              ++          + MI  G  P   TY I+++  C  G +  A+   +EM  +G  P
Sbjct: 104 RFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVP 163

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                + ++ G    G L+       +M       D+ T+N+LI   CK G++   +E Y
Sbjct: 164 DTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFY 223

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   GL  +V +Y  L+ A  K GM+ +A +   ++   G  P    Y  +I    + 
Sbjct: 224 REMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI 283

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G   DAF   +EM   G   N   YT LI       R  EA     +M   G+ P    +
Sbjct: 284 GNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASY 343

Query: 301 DLVTDGLKNCGKHDLAEKIELL 322
           + +  G       D A  +ELL
Sbjct: 344 NALIHGFVKAKNMDRA--LELL 363



 Score = 80.1 bits (196), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 104/244 (42%), Gaps = 1/244 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + + +I  F K   +D A+E+ N+      +  +LLY + ++ LC ++    A  ++  M
Sbjct: 342 SYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEM 401

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G   +   Y  L++A+  SG   E    L EM +      V    +L+ GL     +
Sbjct: 402 KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLV 461

Query: 139 ESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             A    N++    G   +   F ++I+ +CK  +VE    ++  + + GL  D + Y  
Sbjct: 462 SKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTS 521

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    K G + EA  L   + E G K     Y  ++ G+    Q   A  F  EM  +G
Sbjct: 522 LMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 581

Query: 258 HPPN 261
             P+
Sbjct: 582 IHPD 585



 Score = 68.2 bits (165), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 1/153 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTA-FNCQQCVLLYNSLLFALC 63
           ++ MK  ++ V+  T  ++I+   K+ LV  AV+ FN+ +  F  Q    ++ +++  LC
Sbjct: 433 LDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLC 492

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +      A  L  +M++KG VPD+  Y  L++     G + EA     +M++ G    + 
Sbjct: 493 KDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLL 552

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
               LV GL +   L+ A+  + +MI +G   D
Sbjct: 553 AYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPD 585



 Score = 42.7 bits (99), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 74/183 (40%), Gaps = 34/183 (18%)

Query: 160 FNSLIETICKSGEVEFCVEMYY---SVCKLGLCA----DV-----STYKILIPAVS---- 203
           F   +E+ C    + FC  MYY   SV K  + +    DV     ST  + +P       
Sbjct: 6   FKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDA 65

Query: 204 ------KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR----GQFDDAFCFFSEM 253
                   GM++EA +    +     + FP   +    G+  R    G+ DD   FF +M
Sbjct: 66  LFSVLIDLGMLEEAIQCFSKMKR--FRVFPKTRS--CNGLLHRFAKLGKTDDVKRFFKDM 121

Query: 254 KIKGHPPNRPVYTMLIT-MCGRGGRFVEAANYLV-EMTEMGLTPISRCFDLVTDGLKNCG 311
              G  P    Y ++I  MC  G   VEAA  L  EM   GL P +  ++ + DG    G
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGD--VEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 179

Query: 312 KHD 314
           + D
Sbjct: 180 RLD 182


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 143/314 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + MK   +  S  T + ++  + K G +D AV+++++      +  V+ Y +L+      
Sbjct: 425 DRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAK 484

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
           K F  AYAL+  M + G   +  TY +L+N  C   ++ E    L+    +GF P +   
Sbjct: 485 KDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTY 544

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++ G + AG + SA  +  +M ++G   ++ T+ S I+  C++G  +  ++M   V +
Sbjct: 545 NSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRR 604

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            GL  D+  Y  LI    + G +  A +LL  L++DG  P   +Y  +I G        +
Sbjct: 605 RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKE 664

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
              F+  M   G   +   YT LI    + G    A     EM   G  P +  F  +T 
Sbjct: 665 VSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTH 724

Query: 306 GLKNCGKHDLAEKI 319
           GL   G  D A+K+
Sbjct: 725 GLCRSGDIDGAKKL 738



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 6/305 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQ---QCVLLYNSL 58
           +  ++ MK   +S +  T +++I       +VD   EV     +F  +     ++ YNS+
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGIC---MVDRVCEVDGMLKSFMSEGFIPTMMTYNSI 547

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           +    +  +   A+ + ++M  KG  P+  TY   ++ +C +G    A + L ++  +G 
Sbjct: 548 INGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGL 607

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
            P +   + L+ G    G +  A Q++  ++K G   +   +NSLI        ++   +
Sbjct: 608 QPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSK 667

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
            Y S+ K G+ AD STY  LI   SK G +  A  L   ++  G+ P    +  +  G+ 
Sbjct: 668 FYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLC 727

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           R G  D A     EM+     PN  +Y MLI    R  +  EA     EM  MG+ P   
Sbjct: 728 RSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDT 787

Query: 299 CFDLV 303
            +D++
Sbjct: 788 TYDIL 792



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 116/265 (43%), Gaps = 5/265 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II  F K G++ +A  V+ +         ++ Y S +   C       A  ++  +
Sbjct: 543 TYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDV 602

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  PD   Y  L+N +C  G M  A + L  +   G  P     + L+ G  N   +
Sbjct: 603 RRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMM 662

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +   +    MIK G V D  T+ +LI+   K G V F +E+Y  +   G   D  T+  L
Sbjct: 663 KEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTAL 722

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
              + ++G ID A +LL  +     +P   +Y  +I G  R  +  +AF    EM   G 
Sbjct: 723 THGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGI 782

Query: 259 PPNRPVYTMLITMCGRGGRFVEAAN 283
            P+   Y +L++      +F+EA N
Sbjct: 783 QPDDTTYDILVS-----KKFLEADN 802



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 133/304 (43%), Gaps = 1/304 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK         T   +++   K G ++ A+ V ++      +  V++  +L+   C  + 
Sbjct: 253 MKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQE 312

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L +  ++ G VP K  Y +L+      G  ++A E  ++M+ +G  P      L
Sbjct: 313 VGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSL 372

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +++GLLN    + A  +  +M   G   D+ T+N+LI   C++ ++   + ++  + K G
Sbjct: 373 VLKGLLNDRRWKDAVCLFEEMADSGLP-DVFTYNNLIHWHCQAHKLREALNLFDRMKKAG 431

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +   ++TY  L+    K G +DEA +L   +  +G KP    Y  +++G   +  FD+A+
Sbjct: 432 VKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAY 491

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EMK  G   N   Y +LI       R  E    L      G  P    ++ + +G 
Sbjct: 492 ALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGF 551

Query: 308 KNCG 311
              G
Sbjct: 552 VKAG 555



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 112/258 (43%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN+L+   C+      A  L  RM + G  P   TY  L+  +C  G M EA +   
Sbjct: 401 VFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYS 460

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  +GF P V     L++G +     ++A  ++++M + G   +  T+N LI  IC   
Sbjct: 461 EMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVD 520

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            V     M  S    G    + TY  +I    KAGM+  AF +   + E G  P    Y 
Sbjct: 521 RVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYT 580

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             I G  R G  D A    ++++ +G  P+   Y  LI    + G    A   LV + + 
Sbjct: 581 SFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKD 640

Query: 292 GLTPISRCFDLVTDGLKN 309
           GL P +  ++ +  G KN
Sbjct: 641 GLAPNTVVYNSLITGYKN 658



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 4/234 (1%)

Query: 78  MIRKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           M+ +G VPD   RT  ++  A  SS K  +A     EM  +G+       D L+   L  
Sbjct: 148 MVARGVVPDIKSRTDLLIRTARGSSAK--DALALFMEMRGRGYRVDAWMFDALMSACLKE 205

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G  E A ++ ++M       D   +   I  +CK G+    + M   + ++G      TY
Sbjct: 206 GMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTY 265

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
           + ++  + K G ++EA R+   + + G K    +   +++G   R +  +A   F E   
Sbjct: 266 RTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLK 325

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309
            G  P + +Y +LI  C + G   +A     +MT  GL P +    LV  GL N
Sbjct: 326 DGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLN 379



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 109/286 (38%), Gaps = 38/286 (13%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A AL   M  +G+  D   +  L++A    G   +A     EM     +P  R   L + 
Sbjct: 176 ALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAIT 235

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE---------------- 174
            L   G    A +M+ +M + GF     T+ ++++ + K+G +E                
Sbjct: 236 ALCKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKM 295

Query: 175 -----------FCVE--------MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
                      +C+         ++    K G+      Y +LI    + GM  +A+ L 
Sbjct: 296 DVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELC 355

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +   G  P     + ++KG+    ++ DA C F EM   G  P+   Y  LI    + 
Sbjct: 356 RQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQA 414

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
            +  EA N    M + G+ P    ++ +  G   C K  + E ++L
Sbjct: 415 HKLREALNLFDRMKKAGVKPSINTYNSLLMGY--CKKGCMDEAVKL 458



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 50/113 (44%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I+ F K G V  A+E++++  A         + +L   LC      GA  L+  
Sbjct: 682 STYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEE 741

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           M R    P+   Y +L+N +    K++EA     EM + G  P     D+LV 
Sbjct: 742 MRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score = 41.6 bits (96), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            + Y  +   G+  D+ +   L+   ++     +A  L   +   G++    ++  ++  
Sbjct: 142 TDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSA 201

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MC--GRGGRFVEAANYLVEMTEMGL 293
             + G  +DA   F EM      P++ VY + IT +C  G GGR   A   L EM E+G 
Sbjct: 202 CLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGR---ALRMLREMKEVGF 258

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIE 320
                 +  + D L   G+ + A ++ 
Sbjct: 259 DTCDFTYRTMVDVLVKTGRMEEALRVN 285


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ +   G   +A+ + +      C+     Y  L+   C++     A+ L   M
Sbjct: 632 TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 691

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P++ TY  L++ +C   K+  A   L+ M   G  P V+  ++L+ GL      
Sbjct: 692 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 751

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++   MI++G   ++ T+ ++I+ +CK+G     +EM+  + + G   ++ TY  L
Sbjct: 752 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 811

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G ++EA  L   L   G  P    Y  +I+     G+ + AF F   M   G 
Sbjct: 812 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 871

Query: 259 PPNRPVYTMLI 269
            P    Y +LI
Sbjct: 872 QPTLWTYGVLI 882



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 146/325 (44%), Gaps = 6/325 (1%)

Query: 7   LMKPYNLSVSPQTL---SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           + K +   +SP T    S+I+    KH L D+A++VFN+     C+   + Y++L+  LC
Sbjct: 408 MKKVFESEMSPDTFTYTSMILGHCRKHDL-DSALQVFNQMAKEGCEPNTVTYSTLINGLC 466

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +    + A+ LIR MI  G +P   T    + A C  G   +A     +M +KG  P V 
Sbjct: 467 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 526

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ GL  +G L+ A  + ++M + G   +  T+N+LI  + ++  +++   +   +
Sbjct: 527 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 586

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            + GL  ++ TY  +I      G   +A  +++N+++ GH      Y  IIKG    G  
Sbjct: 587 GRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 646

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A      M+  G  P+   YT LI    +  +   A     EM + GL P    +  +
Sbjct: 647 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 706

Query: 304 TDGLKNCGKHDLAEKIELLEVSLRS 328
            DG   C    L     LLE   RS
Sbjct: 707 IDGY--CKDEKLDTATSLLEHMKRS 729



 Score =  101 bits (251), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 121/286 (42%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  ++A  +F       C+  V  Y +L+  LC   L   A  L  RM R G  P+  TY
Sbjct: 504 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 563

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N    + +++ A   L  M   G    +   + +++G    G  + A  ++N M++
Sbjct: 564 NALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 623

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +L T+N++I+  C SG     + +   +   G   D  +Y  LI    K   ++ 
Sbjct: 624 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMES 683

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           AF L + +V+DG  P    Y  +I G  +  + D A      MK  G  PN   Y +LI 
Sbjct: 684 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIH 743

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +   F  A      M E G+ P    +  + DGL   G   LA
Sbjct: 744 GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 789



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 110/244 (45%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN ++   C +     A  ++  M+++G   +  TY  ++  +C SG    A   L 
Sbjct: 595 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 654

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M D G  P       L+ G      +ESA  + N+M+  G   +  T+ +LI+  CK  
Sbjct: 655 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 714

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +++    +   + + G   +V TY +LI  ++K      A  L   ++E+G  P    Y 
Sbjct: 715 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 774

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G    A   F++M  +G  PN   Y+ LI   G+ G+  EA N   E+   
Sbjct: 775 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 834

Query: 292 GLTP 295
           GL P
Sbjct: 835 GLIP 838



 Score = 97.4 bits (241), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 16/304 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K Y +   P+   L++    + G   N V                 YN+++   C+ 
Sbjct: 600 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT----------------YNTIIKGYCDS 643

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M   G  PD+ +Y  L+  +C   KM  A     EM D G  P     
Sbjct: 644 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 703

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G      L++A  ++  M + G   +++T+N LI  + K        E+   + +
Sbjct: 704 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 763

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  +I  + K G    A  + + ++E G  P    Y+ +I+ + + G+ ++
Sbjct: 764 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 823

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F+E++  G  P+   Y  +I      G+   A N+L  M + G  P    + ++  
Sbjct: 824 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 883

Query: 306 GLKN 309
           GLKN
Sbjct: 884 GLKN 887



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 97/217 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L  + +         RM+ +G  P+   Y  ++NA C  G + +A+  ++++ 
Sbjct: 353 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 412

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +   +P       ++ G      L+SA Q+ N+M K+G   +  T+++LI  +C SG V 
Sbjct: 413 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 472

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++   +   G+     T    I A+   G  ++A+RL  ++   G +P    Y  +I
Sbjct: 473 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 532

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
            G+   G    A   F  M   G  PN   Y  LI +
Sbjct: 533 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 569



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 24/282 (8%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
            T + +I+   K+G    A+E+FNK     C   +L Y+SL+ AL +      A  L   +
Sbjct: 772  TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 831

Query: 79   IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
             R G +PD+ TY  ++ A+  SGK+  A  FL  M   G  P +    +L++GL N    
Sbjct: 832  ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 891

Query: 136  -----------------GYLESAKQMVNKMIKQGFVLD----LETFNSLIETICKSGEVE 174
                             GY  + +  V+ M  +   LD    ++  N+L+  +  +G   
Sbjct: 892  ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 951

Query: 175  FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               E+  S+   GLC D   Y  L+ ++ +   +D A  +  ++   G +   + Y  +I
Sbjct: 952  EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 1011

Query: 235  KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
              + +  +  +A   F  M ++   P+  V  +LI    R G
Sbjct: 1012 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 1053



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAI-LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL RR++            I L+ +  S   M     FL  +S  G    +     L+  
Sbjct: 300 ALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIH 359

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G   +     ++M+ +G   +L  +N++I  +CK G V     +   V +  +  D
Sbjct: 360 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD 419

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  +I    +   +D A ++ + + ++G +P    Y+ +I G+   G+ ++AF    
Sbjct: 420 TFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 479

Query: 252 EMKIKGHPPNRPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           EM + G  P     T  +I +C  G  + +A    V+M   G  P    +  +  GL
Sbjct: 480 EMILHGILPTAHTCTGPIIALCDMGC-YEDAWRLFVDMKNKGCEPNVYTYTALISGL 535



 Score = 37.7 bits (86), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%)

Query: 55   YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
            YNSLL +L  V+    A  + + M  +G       Y  L+ A C   + +EA+   + M 
Sbjct: 972  YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENML 1031

Query: 115  DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
             + +NP    + +L+ GLL  GY +   + ++ M  + ++     +  L     K
Sbjct: 1032 MRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 1086


>gi|224056475|ref|XP_002298874.1| predicted protein [Populus trichocarpa]
 gi|222846132|gb|EEE83679.1| predicted protein [Populus trichocarpa]
          Length = 948

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 121/252 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN+L+  L + +   GA  +   M+     P++ TY IL++  C  G   +A   L  M 
Sbjct: 83  YNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCGNFEQALRLLDVME 142

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            KG  P       L+ GL      + AK ++ ++   G V+    + ++I+ +CK G ++
Sbjct: 143 AKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLD 202

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
             +++   + K G   D+ T+ +LI    KAG I  A  ++  + + G  P   +YA +I
Sbjct: 203 ESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKAGLAPNYVIYATLI 262

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
               ++G   +AF  ++ M   GH  +  +  +LI+   R GR  EA +++  M+ + L 
Sbjct: 263 YNSCKKGDITEAFRNYATMTRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLA 322

Query: 295 PISRCFDLVTDG 306
           P S  FD + +G
Sbjct: 323 PNSITFDCIING 334



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 142/311 (45%), Gaps = 4/311 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S++I  F K G + NA EV  K          ++Y +L++  C+      A+     M
Sbjct: 222 TFSVLINGFCKAGKIKNAKEVICKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATM 281

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R G   D     +L+++ C +G++ EA++F++ MS     P     D ++ G    G  
Sbjct: 282 TRTGHDVDYFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDA 341

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  M ++MIK G      T+ SL++ +CK G +    ++ Y +  +    D + Y  +
Sbjct: 342 LKAFSMFDEMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTI 401

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K G + +A  L   +V+    P    YA I+ G+ R+G+   A  FF +   +G 
Sbjct: 402 LSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGT 461

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             PN+ +YT L     + G+   A+    EM   G+ P +   + V DG    GK    E
Sbjct: 462 LSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGK---ME 518

Query: 318 KIELLEVSLRS 328
           K+E L + ++S
Sbjct: 519 KVEKLFIKMQS 529



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 139/310 (44%), Gaps = 2/310 (0%)

Query: 12  NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGA 71
           NLS +  T +++I+     G  + A+ + +   A   +   + Y +LL  L ++  F  A
Sbjct: 110 NLSPNRVTYNILIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIA 169

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
            +L+ R+   G V   R Y  +++  C  G + E+ + L  M   G +P +    +L+ G
Sbjct: 170 KSLMERIRMSGMVVGYRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLING 229

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
              AG +++AK+++ KM K G   +   + +LI   CK G++      Y ++ + G   D
Sbjct: 230 FCKAGKIKNAKEVICKMFKAGLAPNYVIYATLIYNSCKKGDITEAFRNYATMTRTGHDVD 289

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
                +LI ++ +AG + EA   + ++      P    +  II G    G    AF  F 
Sbjct: 290 YFICNVLISSLCRAGRVAEAEDFMRHMSTIDLAPNSITFDCIINGYGILGDALKAFSMFD 349

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM   GH P+   Y  L+    +GG   EA   L ++  +     +  ++ +    + C 
Sbjct: 350 EMIKLGHCPSHFTYGSLLKGLCKGGNLREAKKLLYKLHHIPAAVDTNIYNTILS--ETCK 407

Query: 312 KHDLAEKIEL 321
           +  L++ + L
Sbjct: 408 RGKLSDAVAL 417



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 143/350 (40%), Gaps = 38/350 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC-QQCVLLYNSLLFALCEVK 66
           M  +N+     T ++I+    + G +  A+  F K  A        ++Y SL   L +V 
Sbjct: 421 MVQFNVLPDSHTYAIILAGLSRKGKMVPALLFFEKALARGTLSPNKVMYTSLFDGLFKVG 480

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV---- 122
             + A  +   M  KG  PD      +++ +   GKM + ++   +M      P +    
Sbjct: 481 QSNAASYIYEEMEHKGINPDTIAINAVLDGYSRMGKMEKVEKLFIKMQSGSLTPSLATYN 540

Query: 123 -------RGRDLL------------------------VQGLLNAGYLESAKQMVNKMIKQ 151
                  + +DLL                        + GL  +G L+   +M+ KMI +
Sbjct: 541 ILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGMLDVGFKMLKKMIME 600

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
             ++D  T N LI   C++ ++    ++      LG+  DV+TY  +   +++A  + E+
Sbjct: 601 DTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRASALRES 660

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
             LLH+++E G  P  + Y  +I GM R G    AF    EM+  G        + ++  
Sbjct: 661 HLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRG 720

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321
             + G+  EA   L  M +  L P    F  +   L  C K  L+E ++L
Sbjct: 721 LAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHML--CKKAKLSEALKL 768



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 2/266 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN++L   C+   +  A  LI RM  KG   D  TY +L++  C + +  +    L+
Sbjct: 10  IVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKGYLLLK 69

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M  +   P     + L+ GL+    +  A ++ N+M+      +  T+N LI+  C  G
Sbjct: 70  KMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDGHCDCG 129

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
             E  + +   +   GL  D   Y  L+  +SK    D A  L+  +   G       Y 
Sbjct: 130 NFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVGYRAYT 189

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ + G  D++      M   G  P+   +++LI    + G+   A   + +M + 
Sbjct: 190 AMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEVICKMFKA 249

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAE 317
           GL P    +  +     +C K D+ E
Sbjct: 250 GLAPNYVIYATLI--YNSCKKGDITE 273



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/295 (22%), Positives = 119/295 (40%), Gaps = 1/295 (0%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYA 73
           +V     + I+ E  K G + +AV +F +   FN       Y  +L  L        A  
Sbjct: 392 AVDTNIYNTILSETCKRGKLSDAVALFGEMVQFNVLPDSHTYAIILAGLSRKGKMVPALL 451

Query: 74  LIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
              + + +G   P+K  Y  L +     G+   A    +EM  KG NP     + ++ G 
Sbjct: 452 FFEKALARGTLSPNKVMYTSLFDGLFKVGQSNAASYIYEEMEHKGINPDTIAINAVLDGY 511

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E  +++  KM        L T+N L+    K  ++  C + Y  + ++G+  D 
Sbjct: 512 SRMGKMEKVEKLFIKMQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDK 571

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T   +I  + K+GM+D  F++L  ++ +           +I       +   AF   + 
Sbjct: 572 LTCHSIILGLCKSGMLDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNI 631

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             + G  P+   Y  + T   R     E+   L +M E G+TP S  +  + +G+
Sbjct: 632 KNLLGIIPDVNTYNAIFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGM 686



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 103/238 (43%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141
           G+VP   TY  ++N  C  G+ + A + +  M  KG    V   ++L+  L         
Sbjct: 5   GYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNRSAKG 64

Query: 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201
             ++ KM K+    +  T+N+LI  + K  ++     ++  +  L L  +  TY ILI  
Sbjct: 65  YLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNILIDG 124

Query: 202 VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261
               G  ++A RLL  +   G +P    Y  ++ G+ +  +FD A      +++ G    
Sbjct: 125 HCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSGMVVG 184

Query: 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              YT +I    + G   E+   L  M + G +P    F ++ +G    GK   A+++
Sbjct: 185 YRAYTAMIDGLCKHGLLDESLQLLDMMFKDGASPDIITFSVLINGFCKAGKIKNAKEV 242



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/300 (19%), Positives = 137/300 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  +L+ S  T ++++  + K   +    + +N  T        L  +S++  LC+  +
Sbjct: 527 MQSGSLTPSLATYNILLHGYSKKKDLLKCSKFYNIMTRMGISPDKLTCHSIILGLCKSGM 586

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
               + ++++MI +  + D+ T  +L+   C + KM +A + L   +  G  P V   + 
Sbjct: 587 LDVGFKMLKKMIMEDTLVDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNA 646

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           +  GL  A  L  +  +++ M+++G       + SLI  +C+ G+++    +   +  +G
Sbjct: 647 IFTGLNRASALRESHLLLHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIG 706

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + +       ++  +++ G ++EA  +L  +++    P  + +  ++  + ++ +  +A 
Sbjct: 707 VSSWDVAESAMVRGLAQCGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEAL 766

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               +M + G   +   Y +LI+     G  + A N   EM E GL P +  +  + D +
Sbjct: 767 KLRGKMALYGVKLDVVAYNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAI 826



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 2/216 (0%)

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M   G+ P +   + ++      G  ++A  ++++M  +G   D+ T+N LI+ +CK+  
Sbjct: 1   MEGSGYVPTIVTYNTILNWCCKKGRYKAASDLIDRMESKGIEADVCTYNMLIDDLCKNNR 60

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
                 +   + K  +  +  TY  LI  + K   I  A R+ + ++     P    Y  
Sbjct: 61  SAKGYLLLKKMRKRMIAPNEFTYNTLINGLMKERKIGGATRVFNEMLMLNLSPNRVTYNI 120

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G    G F+ A      M+ KG  P+   Y  L++   +  +F  A + +  +   G
Sbjct: 121 LIDGHCDCGNFEQALRLLDVMEAKGLRPDEVNYGALLSGLSKLAKFDIAKSLMERIRMSG 180

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
           +    R +  + DGL  C    L E ++LL++  + 
Sbjct: 181 MVVGYRAYTAMIDGL--CKHGLLDESLQLLDMMFKD 214



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 38/237 (16%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   TL+++I    +   +  A ++ N          V  YN++   L        ++ L
Sbjct: 604 VDQLTLNMLITNSCETDKMGKAFDLLNIKNLLGIIPDVNTYNAIFTGLNRASALRESHLL 663

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +  M+ +G  P    Y  L+N  C  G ++ A     EM   G +        +V+GL  
Sbjct: 664 LHDMLERGITPTSTQYISLINGMCRMGDIQGAFRLKDEMEAIGVSSWDVAESAMVRGLAQ 723

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY-------------- 180
            G +E A  +++ M+++  +  + TF +L+  +CK  ++   +++               
Sbjct: 724 CGKVEEAMLVLDCMLQKRLIPTVATFTTLMHMLCKKAKLSEALKLRGKMALYGVKLDVVA 783

Query: 181 YSVCKLGLCAD---------------------VSTYKILIPAVS-KAGMIDEAFRLL 215
           Y+V   GLCAD                      +TY  LI A+S   G ++E  RLL
Sbjct: 784 YNVLISGLCADGDALAAFNLYEEMKERGLWPNTTTYCTLIDAISTNEGEVEE--RLL 838


>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 136/291 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  V+ A E+ ++  + N +  V +YN+L+           AY +I  M   G  P   
Sbjct: 342 KNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGVV 401

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY IL+N +C+ G M +A+  + +M   G NP     + L++GL     L+ A   V+  
Sbjct: 402 TYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDH 461

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
           ++ G   D+ + N LI+  CK  +V+  +E++  +   G+ AD  TY  LI  +   G  
Sbjct: 462 MEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYY 521

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           + A  L   +++    P  +LY  ++  + + G    A   F  M  K   P+   Y  L
Sbjct: 522 NLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTL 581

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           I   G+  R +EA +   +M   G+ P S  F  + +GL + G+  LA ++
Sbjct: 582 IYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEV 632



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 8/297 (2%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL---CEVKLFHGAYALIRRM 78
           +++  + + G  D+ +  F++     C++  + YN  +  L   C   L    Y +    
Sbjct: 160 ILLSGYVRAGKFDSVIGTFDEMVMSGCREFGIDYNRYIGVLIKNCCFDLVEKYYGM---A 216

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG      TY+  ++A C S ++   +E L +M   GF+P +   ++ +  L     L
Sbjct: 217 LSKGLCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRL 276

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A QMV KM  +G + D+ T+ +++  +C +      V ++  + K+GL  DV     L
Sbjct: 277 HDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGAL 336

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K   ++EAF L   ++    +   S+Y  +I G +R G  D A+   S M+  G 
Sbjct: 337 IFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGC 396

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            P    Y +L+      G   +A N + +M   G+ P    ++ +  GL  C  H L
Sbjct: 397 EPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGL--CKTHQL 451



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 138/317 (43%), Gaps = 4/317 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L ++P T S  I    +   ++   E+      F     +   N  +  LC+    H A 
Sbjct: 221 LCLTPFTYSRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDAL 280

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            ++ +M  KG +PD  TY  +V   C++ +  EA    +EM   G  P V     L+ GL
Sbjct: 281 QMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACGALIFGL 340

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                +E A ++ ++M+     L +  +N+LI    ++G ++    +   +   G    V
Sbjct: 341 CKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKAYTIISFMRTNGCEPGV 400

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY IL+      GM+++A  L+  +   G  P    Y  ++KG+ +  Q D AF F S+
Sbjct: 401 VTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSD 460

Query: 253 -MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            M++ G         ++   C +  +   A     EM   G+   +  +  + +GL + G
Sbjct: 461 HMEVGGFCDIVSCNILIDAFC-KVKKVKSALELFKEMDYKGMQADAVTYGTLINGLFSVG 519

Query: 312 KHDLAEKIELLEVSLRS 328
            ++LAE  EL E  L++
Sbjct: 520 YYNLAE--ELFEQMLKA 534



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 118/270 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +  I  M+         T ++++  +   G+++ A  +  K            YN LL  
Sbjct: 385 YTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQLLKG 444

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A+A +   +  G   D  +  IL++A+C   K++ A E  +EM  KG    
Sbjct: 445 LCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQAD 504

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+ GL + GY   A+++  +M+K     ++  +N ++  +CK G+++   +++ 
Sbjct: 505 AVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFL 564

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + +  +  D+ TY  LI  + K     EA  L  ++   G +P    +  +I G+   G
Sbjct: 565 HMIQKEILPDIVTYNTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEG 624

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
           +   A+  +  M   G   +R V   LI++
Sbjct: 625 RSTLAYEVWEYMMENGIILDREVSERLISV 654



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  + A E+F +         V LYN +L  LC+V     A  +   MI+K  +PD  TY
Sbjct: 519 GYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTY 578

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+     + +  EA +  ++M  KG  P       L+ GLL+ G    A ++   M++
Sbjct: 579 NTLIYWLGKNSRAMEALDLFKDMRTKGVEPDSLTFKYLINGLLDEGRSTLAYEVWEYMME 638

Query: 151 QGFVLDLETFNSLIETI 167
            G +LD E    LI  +
Sbjct: 639 NGIILDREVSERLISVL 655


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 7/317 (2%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +  + +  ++I+    KHG    A+++ +     +C   +  YN L+ ALC+
Sbjct: 27  LEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCK 86

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR----EAQEFLQEMSDKGFNP 120
           V     A  L+  M  +    D  TY  L++  C  G  R     A    +EM DKG  P
Sbjct: 87  VGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTP 146

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                 +++  LL     E A+++++ M + G   DL T+N LI    K+G ++  ++++
Sbjct: 147 TSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF 206

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +   G   DV TY  ++    KAG ++EA +L   +   G  P    Y  I     + 
Sbjct: 207 VEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKA 266

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG-GRFVEAANYLVEMTEMGLTPISRC 299
           G+  DA  +  EM+ +G         ++ T+C  G G+       L EM E G  P    
Sbjct: 267 GRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGKL--GFQLLREMLEKGFKPNLVT 324

Query: 300 FDLVTDGLKNCGKHDLA 316
           F++V + L      D A
Sbjct: 325 FNVVFEALSKESNTDDA 341



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 123/284 (43%), Gaps = 39/284 (13%)

Query: 49  QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
           Q     Y++++   CE      A AL+  M       + + Y I++   C  GK +EA +
Sbjct: 1   QANAFTYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALD 60

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
            L  M+     P +   ++L+  L   G LE A+ +V  M  +    D+ T+N+LI  +C
Sbjct: 61  LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLC 120

Query: 169 KSGEVEFCVE------------------MYYSVCKLGL--------------------CA 190
           + G   F VE                  + Y+V    L                    CA
Sbjct: 121 RKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCA 180

Query: 191 -DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            D+ TY +LI   +KAGM+D+A  L   +   G  P    Y  ++ G  + G+ ++A   
Sbjct: 181 FDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKL 240

Query: 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           F+EMK +G  PN   YT +   C + GR  +A  YLVEM + GL
Sbjct: 241 FAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL 284



 Score = 88.6 bits (218), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 4/235 (1%)

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           TY+ +V  +C  G+ R+A   L+ M +       +  ++++  L   G  + A  +++ M
Sbjct: 6   TYSTIVRGYCEDGETRQALALLEHMKNAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 65

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG-- 206
                  D+ T+N LI  +CK G +E    +   +       D+ TY  LI  + + G  
Sbjct: 66  ATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTDIVTYNTLIHGLCRKGNG 125

Query: 207 --MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              ++ AFRL   +V+ GH P    Y  +I  + R    + A      M   G   +   
Sbjct: 126 RFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVT 185

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           Y MLI    + G   +A +  VEM   G  P    ++ V DG    GK + A K+
Sbjct: 186 YNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKL 240



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 85/173 (49%), Gaps = 1/173 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
            K ++LM     +    T +++I  F K G++D A+++F +     C   V+ YNS++  
Sbjct: 168 QKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDG 227

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C+      A  L   M  +G  P+ RTY  + +A   +G+M++A  +L EM  +G    
Sbjct: 228 FCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDA 287

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +     L+  +   G  +   Q++ +M+++GF  +L TFN + E + K    +
Sbjct: 288 I-SYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTD 339


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 135/298 (45%), Gaps = 1/298 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            + +IE   K G V  A E+  +      +  V  + +L+  LC+      A+ L  +++
Sbjct: 275 FTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLV 334

Query: 80  R-KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           R +   P+  TY  +++ +C   KM  A+  L  M ++G  P       L+ G   AG  
Sbjct: 335 RSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNF 394

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A +++N M ++GF  ++ T+N++++ +CK G V+   ++  S  + GL AD  TY IL
Sbjct: 395 ERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTIL 454

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    K   I +A  L + +V+ G +P    Y  +I    R  +  ++  FF E    G 
Sbjct: 455 ISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGL 514

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            P    YT +I    R G    A  +   M++ G    S  +  +  GL    K D A
Sbjct: 515 VPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDEA 572



 Score =  114 bits (284), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 143/323 (44%), Gaps = 3/323 (0%)

Query: 7   LMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           L+   N   + + +  +++ F + G V  A+E+  +             N ++  + E+ 
Sbjct: 122 LISNKNFEKAHEVMQCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMG 181

Query: 67  LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           L   A  L   M  +G  P+  +Y ++V  +C  G + E+  +L  M ++GF        
Sbjct: 182 LVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLS 241

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           L+V+     G++  A     +  + G   +L  F  +IE +CK G V+   EM   +   
Sbjct: 242 LIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGR 301

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDD 245
           G   +V T+  LI  + K G  ++AFRL   LV  + HKP    Y  +I G  R  + + 
Sbjct: 302 GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNR 361

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A    S MK +G  PN   YT LI    + G F  A   +  M E G +P    ++ + D
Sbjct: 362 AEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVD 421

Query: 306 GLKNCGKHDLAEKIELLEVSLRS 328
           GL  C K  + E  ++L+   R+
Sbjct: 422 GL--CKKGRVQEAYKVLKSGFRN 442



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 123/278 (44%), Gaps = 1/278 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G  + A  +F K   + N +  VL Y +++   C  +  + A  L+ R
Sbjct: 309 THTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSR 368

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  P+  TY  L++  C +G    A E +  M+++GF+P V   + +V GL   G 
Sbjct: 369 MKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGR 428

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A +++    + G   D  T+  LI   CK  E++  + ++  + K G+  D+ +Y  
Sbjct: 429 VQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTT 488

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    +   + E+       V  G  P    Y  +I G  R G    A  FF  M   G
Sbjct: 489 LIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHG 548

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +   Y  LI+   +  +  EA      M E GLTP
Sbjct: 549 CASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTP 586



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 140/305 (45%), Gaps = 1/305 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   TLSLI+ EF + G V  A+  F +      +  ++ +  ++  LC+      A+ +
Sbjct: 235 VDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEM 294

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +  M+ +G+ P+  T+  L++  C  G   +A + FL+ +  +   P V     ++ G  
Sbjct: 295 LEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYC 354

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               +  A+ ++++M +QG   +  T+ +LI+  CK+G  E   E+   + + G   +V 
Sbjct: 355 RDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVC 414

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  ++  + K G + EA+++L +   +G       Y  +I    ++ +   A   F++M
Sbjct: 415 TYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKM 474

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
              G  P+   YT LI +  R  R  E+  +  E    GL P ++ +  +  G    G  
Sbjct: 475 VKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNL 534

Query: 314 DLAEK 318
            LA K
Sbjct: 535 RLALK 539



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 97/218 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L+ +  T + +I+   K G  + A E+ N          V  YN+++  LC+   
Sbjct: 369 MKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGR 428

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY +++   R G   DK TY IL++  C   ++++A     +M   G  P +     
Sbjct: 429 VQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTT 488

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+        ++ ++    + ++ G V   +T+ S+I   C+ G +   ++ ++ +   G
Sbjct: 489 LIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHG 548

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
             +D  TY  LI  + K   +DEA  L   ++E G  P
Sbjct: 549 CASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTP 586


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 14/318 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
              + I+ F   G + NAV VF           V  +N LL AL +  L   A  +  RM
Sbjct: 3   AFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM 62

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R  + PD R+Y  L+ AWC++  + EA     EM + G  P V   + +++GLL     
Sbjct: 63  -RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 121

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M   M  +G   ++ T+  LI   CK G+++  +  +  +  +G   DV+TY  L
Sbjct: 122 PEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCL 181

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     A  +D    LL  + + G  P    Y  +IK +  R   DDA   + +M  KG 
Sbjct: 182 LVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL 241

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLV------EMTEMGLTPISRCFDLVTDGLKNCGK 312
            P    Y M++     GGR     NY++      EM   G+ P    + +  +G    G+
Sbjct: 242 EPTIHTYNMMMKSYFLGGR-----NYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGR 296

Query: 313 HDLAEKI--ELLEVSLRS 328
            + A K   E+++  +++
Sbjct: 297 PEEACKYIEEMIQKGMKT 314



 Score = 67.4 bits (163), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 36/256 (14%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  ELMK    + +  T +++I +  K G +D A+  F +     CQ             
Sbjct: 126 KMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQ------------- 172

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                                 PD  TY  L+  + ++ +M      L+EM+ KG  P  
Sbjct: 173 ----------------------PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDG 210

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYY 181
           R  + L++ L N    + A ++  KMIK+G    + T+N ++++    G        ++ 
Sbjct: 211 RTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWE 270

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+C DV++Y + I    + G  +EA + +  +++ G K     Y        + G
Sbjct: 271 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAG 330

Query: 242 QFDDAFCFFSEMKIKG 257
           + D  +    ++K  G
Sbjct: 331 KPDILYELAQKVKFTG 346


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 136/294 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS+     + +I+   K G +  A +   +    N     ++YN  +  LC +  F  A 
Sbjct: 515 LSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAK 574

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +++  M   G  PD+ TY  ++ + C  G+  +A + L EM      P +   + LV GL
Sbjct: 575 SILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGL 634

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E AK ++N+M+  GF     T   +++   +S  ++  ++++  +   GL AD+
Sbjct: 635 FGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + Y  L+  +   GM  +A  +L  ++  G  P    +  +I G  +    D+AF  +++
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           M  +   PN   +  L+      GR  EA   L+EM + GL P +  +D++  G
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTG 808



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 2/294 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++  GK G  D   +      + N     + Y  L+ ALC+      A  ++  M
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEM 405

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ ++N +   G + +A E+ + M ++G NP V     L+ G       
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A ++ + M+ +G  ++    +SL+  + ++G++E  + ++      GL  D   Y  L
Sbjct: 466 DAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +  AF+    L++    P   +Y   I  +   G+F +A    +EM+  G 
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGL 585

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P++  Y TM+++ C R G   +A   L EM    + P    ++ +  GL   G
Sbjct: 586 KPDQSTYNTMIVSHC-RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTG 638



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 129/299 (43%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++ ++    + +  ++ YN+L+  L     
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGA 639

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+  GF P   T+  ++ A   S ++    +  + M + G +  +   + 
Sbjct: 640 VEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT 699

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q L   G    A  ++ +M+  G   D  TFN+LI   CKS  ++     Y  +    
Sbjct: 700 LLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +++T+  L+  +   G I EA  +L  + + G +P    Y  ++ G  ++    +A 
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAM 819

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EM  KG  P    Y  LI+   + G   +A     +M + G+ P S  +D++  G
Sbjct: 820 RLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 11/305 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ ++    ++G VD A  + ++    +    V+ +N+L+   C V     A ++  RM
Sbjct: 137 TVNTLLAGLCRNGQVDAAAALADRGGGIHALD-VIGWNTLIAGYCRVGDTPAALSVADRM 195

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   D   Y  LV  +C +G++  A+  L  M + G +P V      +        +
Sbjct: 196 TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGV 255

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M++ G +LD+ T ++L+  +C+ G       ++  + K+G   +  TY  L
Sbjct: 256 EEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTL 315

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA-----FCFFSEM 253
           I +++KAG   E   LL  +V  G       Y  ++  + ++G+ D+      F     +
Sbjct: 316 IDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKH 313
            + G       YT+LI    +     EA   L+EM E  ++P    F  V +G    G  
Sbjct: 376 SLNG-----VTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLL 430

Query: 314 DLAEK 318
           D A +
Sbjct: 431 DKATE 435



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 132/307 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   +  +  T +  I  + +   V+ A +++           V+  ++L+  LC 
Sbjct: 227 LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCR 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              F  AYAL R M + G VP+  TY  L+++   +G+ +E    L EM  +G    +  
Sbjct: 287 DGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVT 346

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L+  L   G  +  K  +   +     L+  T+  LI+ +CK+  V+   ++   + 
Sbjct: 347 YTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEME 406

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           +  +  +V T+  +I    K G++D+A      + E G  P    Y  +I G F+    D
Sbjct: 407 EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
            A   + +M  +G   N+ +   L+    + G+  EA     + +  GL+     +  + 
Sbjct: 467 AALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLI 526

Query: 305 DGLKNCG 311
           DGL   G
Sbjct: 527 DGLFKAG 533



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL-------------------- 62
           +I  + + G    A+ V ++ TA      V+ YN+L+                       
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 63  ---------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                          C  K    A+ L   M+R G + D  T + LV   C  G+  EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +EM   G  P       L+  L  AG  +    ++ +M+ +G V+DL T+ +L++ +
Sbjct: 295 ALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWL 354

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G+ +   +         L  +  TY +LI A+ KA  +DEA ++L  + E    P  
Sbjct: 355 GKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNV 414

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             ++ +I G  +RG  D A  +   MK +G  PN   Y  LI
Sbjct: 415 VTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 117/297 (39%), Gaps = 50/297 (16%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+LL++ C ++L   A AL+R        P    Y IL+ A         A   L EM  
Sbjct: 77  NALLYSHCRLRLLRPAIALLRSS-----RPTTVAYNILLAALSDHA---HAPAVLAEMCK 128

Query: 116 KGFNPPVRGR--DLLVQGLLNAGYLESAKQMVNKMIKQGF-VLDLETFNSLIETICKSGE 172
           +G   P  G   + L+ GL   G +++A  + ++    G   LD+  +N+LI   C+ G+
Sbjct: 129 RGV--PFDGVTVNTLLAGLCRNGQVDAAAALADR--GGGIHALDVIGWNTLIAGYCRVGD 184

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
               + +   +   GL  DV  Y  L+    +AG +D A  +L  + E G  P  + Y P
Sbjct: 185 TPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTP 244

Query: 233 -----------------------------------IIKGMFRRGQFDDAFCFFSEMKIKG 257
                                              ++ G+ R G+F +A+  F EM   G
Sbjct: 245 FIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVG 304

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             PN   Y  LI    + GR  E  + L EM   G+      +  + D L   GK D
Sbjct: 305 AVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361



 Score = 80.9 bits (198), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 116/285 (40%), Gaps = 4/285 (1%)

Query: 14  SVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           S+ P  ++   L+   FG  G V+ A  + N+  +       L +  +L A  + +    
Sbjct: 619 SIKPNLITYNTLVAGLFGT-GAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
              +   M+  G   D   Y  L+   C  G  R+A   L+EM   G  P     + L+ 
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   + +L++A     +M+ Q    ++ TFN+L+  +   G +     +   + K GL  
Sbjct: 738 GHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEP 797

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY IL+    K     EA RL   +V  G  P  S Y  +I    + G    A   F
Sbjct: 798 NNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELF 857

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+ +G  P    Y +L++   R     E    L +M E G +P
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSP 902



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 128/301 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            +MK   ++ +  T   +I+ F K    D A+EV++       +    + +SL+  L + 
Sbjct: 438 RMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQN 497

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL +     G   D   Y  L++    +G M  A +F QE+ D+   P     
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ +  L   G  + AK ++ +M   G   D  T+N++I + C+ GE    +++ + +  
Sbjct: 558 NVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  ++ TY  L+  +   G +++A  LL+ +V  G  P    +  +++   +  + D 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                  M   G   +  VY  L+ +    G   +A   L EM   G+ P +  F+ +  
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 306 G 306
           G
Sbjct: 738 G 738



 Score = 44.3 bits (103), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           ++P NL     T  +++   GK      A+ ++ +         V  YN+L+    +  +
Sbjct: 795 LEPNNL-----TYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGM 849

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
              A  L + M ++G  P   TY ILV+ W       E ++ L++M +KGF+P
Sbjct: 850 MTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSP 902


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  115 bits (287), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 150/331 (45%), Gaps = 17/331 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E MK   L     T +++++ F K GL++ A + FN+     C   V+ Y +L+ A  + 
Sbjct: 507 EEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKA 566

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM------------ 113
           K    A  L   M+ +G +P+  TY+ L++  C +G+M +A +  + M            
Sbjct: 567 KKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMY 626

Query: 114 -----SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
                 D    P V     L+ G      +E A+++++ M  +G   +   +++LI+ +C
Sbjct: 627 FKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLC 686

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
           K G+++   E+   + + G  A + TY  LI    K    D A ++L  ++E+   P   
Sbjct: 687 KVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVV 746

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           +Y  +I G+ + G+ D+A+     M+ KG  PN   YT +I   GR G+       L  M
Sbjct: 747 IYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERM 806

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              G+ P    + ++ D     G  D+A  +
Sbjct: 807 GSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 837



 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 128/281 (45%), Gaps = 17/281 (6%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           +S    LC    +  A+++IR MI +GF+PD  TY+ ++   C++ KM  A    +EM  
Sbjct: 452 SSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKR 511

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G    V    ++V     AG +E A++  N+M + G   ++ T+ +LI    K+ +V +
Sbjct: 512 GGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSY 571

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV---------------- 219
             E++ ++   G   ++ TY  LI    KAG +++A ++   +                 
Sbjct: 572 ANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYD 631

Query: 220 -EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278
            ++  +P   +Y  ++ G  +  + ++A      M ++G  PN+ VY  LI    + G+ 
Sbjct: 632 DDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKL 691

Query: 279 VEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            EA     EM+E G       +  + D      + DLA K+
Sbjct: 692 DEAQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKV 732



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 23/328 (7%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK------LFH 69
           SP+  + ++  +   G    A ++  K          ++YN L+ ++C  K      L  
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLE 430

Query: 70  GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
            A      M+  G V +K   +      CS+GK  +A   ++EM  +GF P       ++
Sbjct: 431 LAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
             L NA  +E A  +  +M + G V D+ T+  ++++ CK+G +E   + +  + ++G  
Sbjct: 491 GYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
            +V TY  LI A  KA  +  A  L   ++ +G  P    Y+ +I G  + GQ + A   
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQI 610

Query: 250 FSEM-----------------KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           F  M                       PN  +Y  L+    +  R  EA   L  M+  G
Sbjct: 611 FERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEG 670

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEKIE 320
             P    +D + DGL   GK D A++++
Sbjct: 671 CEPNQIVYDALIDGLCKVGKLDEAQEVK 698



 Score = 92.0 bits (227), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 131/329 (39%), Gaps = 44/329 (13%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K +    S  T + +I+ F K   +D+A  V  + +  N +          ++LC+V  
Sbjct: 226 LKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGK 285

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           +  A  L   M  + FVPD   Y  L++  C +    EA +FL  M      P V     
Sbjct: 286 WREALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYST 342

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G LN   L   K+++N M+ +G     + FNSL+   C SG+  +  ++   + K G
Sbjct: 343 LLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCG 402

Query: 188 LCADVSTYKILIPAV-----------------------------------------SKAG 206
                  Y ILI ++                                           AG
Sbjct: 403 HTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAG 462

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
             ++AF ++  ++  G  P  S Y+ ++  +    + + AF  F EMK  G   +   YT
Sbjct: 463 KYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYT 522

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           +++    + G   +A  +  EM E+G TP
Sbjct: 523 IMVDSFCKAGLIEQARKWFNEMREVGCTP 551



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 138/329 (41%), Gaps = 42/329 (12%)

Query: 2   WK-TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           W+  + LM+  N        + +I    +  L + A++  N+  A +C   V+ Y++LL 
Sbjct: 286 WREALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLC 345

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                K       ++  M+ +G  P  + +  LV+A+C+SG    A + L++M   G  P
Sbjct: 346 GCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTP 405

Query: 121 PVRGRDLLV-----------------------------------------QGLLNAGYLE 139
                ++L+                                         + L +AG  E
Sbjct: 406 GYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYE 465

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A  ++ +MI QGF+ D  T++ ++  +C + ++E    ++  + + GL ADV TY I++
Sbjct: 466 KAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMV 525

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
            +  KAG+I++A +  + + E G  P    Y  +I    +  +   A   F  M  +G  
Sbjct: 526 DSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCL 585

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           PN   Y+ LI    + G+  +A      M
Sbjct: 586 PNIVTYSALIDGHCKAGQMEKACQIFERM 614



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 4/272 (1%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V++Y +LL   C++     A  L+  M  +G  P++  Y  L++  C  GK+ EAQE   
Sbjct: 640 VVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKA 699

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EMS+ GF   +     L+         + A ++++KM++     ++  +  +I+ +CK G
Sbjct: 700 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 759

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + +   ++   + + G   +V TY  +I    + G I+    LL  +   G  P    Y 
Sbjct: 760 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYR 819

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I    + G  D A     EMK    P +   Y  +I   G    F+E+   L E+ + 
Sbjct: 820 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIE--GFNKEFIESLGLLDEIGQD 877

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
              P    + L+ D L    + ++A  + LLE
Sbjct: 878 DTAPFLSLYRLLVDNLIKAQRLEMA--LRLLE 907



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 22/285 (7%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  +    +  T S +I+ + K    D A +V +K    +C   V++Y  ++  LC+V  
Sbjct: 701 MSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 760

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L++ M  KG  P+  TY  +++ +   GK+    E L+ M  KG  P      +
Sbjct: 761 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G L+ A  ++ +M +  +      +  +IE   K    EF       +  LG
Sbjct: 821 LIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNK----EF-------IESLG 869

Query: 188 LCADV---------STYKILIPAVSKAGMIDEAFRLLHNLVEDGHK--PFPSLYAPIIKG 236
           L  ++         S Y++L+  + KA  ++ A RLL  +         + S Y  +I+ 
Sbjct: 870 LLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIES 929

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           +    + D AF  FSEM  KG  P    +  LI    R  +  EA
Sbjct: 930 LCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEA 974



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 122/272 (44%), Gaps = 2/272 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +++ F K   V+ A ++ +  +   C+   ++Y++L+  LC+V     A  +   M   G
Sbjct: 646 LLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHG 705

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
           F     TY+ L++ +    +   A + L +M +    P V     ++ GL   G  + A 
Sbjct: 706 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 765

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++  M ++G   ++ T+ ++I+   + G++E C+E+   +   G+  +  TY++LI   
Sbjct: 766 KLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHC 825

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
            K G +D A  LL  + +       + Y  +I+G  +  +F ++     E+      P  
Sbjct: 826 CKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNK--EFIESLGLLDEIGQDDTAPFL 883

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            +Y +L+    +  R   A   L E+     T
Sbjct: 884 SLYRLLVDNLIKAQRLEMALRLLEEVATFSAT 915



 Score = 63.5 bits (153), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 35/228 (15%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           +I+   K G  D A ++        CQ  V+ Y +++     +        L+ RM  KG
Sbjct: 751 MIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKG 810

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD--------------KGFN--------- 119
             P+  TY +L++  C +G +  A   L+EM                +GFN         
Sbjct: 811 VAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKEFIESLGL 870

Query: 120 ----------PPVRGRDLLVQGLLNAGYLESAKQMVNKMIK-QGFVLDLE-TFNSLIETI 167
                     P +    LLV  L+ A  LE A +++ ++      ++D   T+NSLIE++
Sbjct: 871 LDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESL 930

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           C + +V+    ++  + K G+  ++ T+  LI  + +   I EA  LL
Sbjct: 931 CLANKVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEALLLL 978



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 5/223 (2%)

Query: 92  ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151
           +LV  +C SG    A E L  + D  F P     + L+Q  L A  L+SA  +  +M   
Sbjct: 205 VLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLA 264

Query: 152 GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
              +D  T      ++CK G+    + +  +        D   Y  LI  + +A + +EA
Sbjct: 265 NLRMDGFTLRCYAYSLCKVGKWREALTLMETE---NFVPDTVFYTKLISGLCEASLFEEA 321

Query: 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271
              L+ +      P    Y+ ++ G   + Q        + M ++G  P+  ++  L+  
Sbjct: 322 MDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
               G    A   L +M + G TP    ++++   +  CG  D
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSI--CGDKD 422


>gi|255586858|ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525946|gb|EEF28343.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 137/311 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           +L +   +  +  + S++I    +   +D AV +F       C + +LLYN+L+  LC  
Sbjct: 220 KLFRDEKIRPNTASFSIVINGLMQACKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNS 279

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                +Y L++ M   GF P + T   +    C    +  A + +++M   G  P V+  
Sbjct: 280 DRLEESYKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHY 339

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
            LLV+ L   G    A   +  M+++GF  ++  +++L+  + +  EV+  ++++  +  
Sbjct: 340 TLLVRKLCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISA 399

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G C DV  Y IL+  + +A   +EA  L + +V  G  P    Y  +I G  + G  DD
Sbjct: 400 RGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDD 459

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M  K   PN   YT LI    + GR  +A     EM   G  P    F     
Sbjct: 460 AMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIH 519

Query: 306 GLKNCGKHDLA 316
           GL  C K + A
Sbjct: 520 GLCKCDKPEAA 530



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 134/283 (47%), Gaps = 6/283 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +K ++ M+      +  TL+ I     K   V  A+++  K   + C+  V  Y  L+  
Sbjct: 286 YKLLKEMEESGFKPTQFTLNSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRK 345

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A   +  M+++GF P+   Y+ L+       ++ +A +  +++S +G  P 
Sbjct: 346 LCKHGKAAEASIFLTDMVQEGFPPNIIAYSALLGGLIEVQEVDQALKLFKDISARGRCPD 405

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V   ++L++GL  A   E A+ + N+M+ +G +  + T+N LI+  CK+G ++  +    
Sbjct: 406 VIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNLLIDGWCKNGCIDDAMNCLC 465

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S+       +V TY  LI  + KAG  D+A  L + +   G +P    +   I G+ +  
Sbjct: 466 SMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCD 525

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           + + A   F EM+ +   P+  VY  L++       FV  +N+
Sbjct: 526 KPEAALIHFHEMEEEEMEPDTYVYISLVSA------FVNISNF 562



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 144/329 (43%), Gaps = 16/329 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           IE M+  N  ++ +T   +I  F K   VD  V++F K   +     + LY+ L+   C 
Sbjct: 67  IEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDVLIGGFCS 126

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            K    A +L   M      PD    + L++++   GK+ +  E  + + D         
Sbjct: 127 NKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDILE--ETLEDMNIETQTLL 184

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE--------------TFNSLIETICKS 170
            + ++  L+N+G ++ A  ++  M+  G   D++              +F+ +I  + ++
Sbjct: 185 CNSVLSSLVNSGLIDKACCLLRNMMGNGDDDDVQYKLFRDEKIRPNTASFSIVINGLMQA 244

Query: 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230
            +++  V ++  + ++G   D+  Y  LI  +  +  ++E+++LL  + E G KP     
Sbjct: 245 CKLDLAVCLFQDMAEIGCNRDLLLYNNLINGLCNSDRLEESYKLLKEMEESGFKPTQFTL 304

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             I   + +R     A     +M++ G  P    YT+L+    + G+  EA+ +L +M +
Sbjct: 305 NSIFGCLCKRQDVSGALDLVKKMRLYGCEPWVKHYTLLVRKLCKHGKAAEASIFLTDMVQ 364

Query: 291 MGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G  P    +  +  GL    + D A K+
Sbjct: 365 EGFPPNIIAYSALLGGLIEVQEVDQALKL 393



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%)

Query: 33  VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92
           VD A+++F   +A      V+ YN L+  L E      A  L   M+ KG +P   TY +
Sbjct: 387 VDQALKLFKDISARGRCPDVIAYNILMKGLYEAHRTEEARNLFNEMVMKGLIPSVVTYNL 446

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
           L++ WC +G + +A   L  MS K   P V     L+ GL  AG  + A  + N+M ++G
Sbjct: 447 LIDGWCKNGCIDDAMNCLCSMSAKEREPNVFTYTTLIDGLCKAGRPDDAVMLWNEMRRRG 506

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              +   F   I  +CK  + E  +  ++ + +  +  D   Y  L+ A         AF
Sbjct: 507 CRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYISLVSAFVNISNFPMAF 566

Query: 213 RLLHNLVEDGHKPFP 227
            +L  +V+  + P P
Sbjct: 567 EILKKMVDRRNFPDP 581



 Score = 61.2 bits (147), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 1/168 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G    K T   ++  +C++GK  EA     E+ D G+        +LV      G 
Sbjct: 1   MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGW-LDAYVFSILVLSFSKWGQ 59

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ + + + KM +Q F L+ +TF +LI    K   V+  V+++Y + K GL  D+S Y +
Sbjct: 60  VDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDV 119

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LI        +D+A  L   +     +P   + + +I      G+  D
Sbjct: 120 LIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLID 167



 Score = 53.5 bits (127), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 89/204 (43%), Gaps = 3/204 (1%)

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M D+G +        ++Q   NAG  + A  + N++   G+ LD   F+ L+ +  K G+
Sbjct: 1   MRDQGLSFSKYTLTPVLQVYCNAGKFDEALNVFNEIQDHGW-LDAYVFSILVLSFSKWGQ 59

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V+   E    + +     +  T+  LI    K   +D+  +L + + + G  P  SLY  
Sbjct: 60  VDKSFEFIEKMEEQNFRLNEKTFCNLIHGFVKQSRVDKGVQLFYKMQKYGLSPDISLYDV 119

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           +I G     + D A   ++EMK+    P+  V + LI+     G+ ++     +E  +M 
Sbjct: 120 LIGGFCSNKKLDKALSLYAEMKMLKIQPDIGVVSKLISSFPEEGKLIDILEETLE--DMN 177

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           +   +   + V   L N G  D A
Sbjct: 178 IETQTLLCNSVLSSLVNSGLIDKA 201


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 118/256 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   MI  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYMPS 415



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++     P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ +  K GE+     ++ ++ K  L   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSV 416


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 118/256 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYMPS 415



 Score = 87.4 bits (215), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++     P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y  +M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 84.7 bits (208), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ +  K GE+     ++ ++ K  L   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   K    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSV 416


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 120/243 (49%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V+ Y +++   C V   + A  +   M+++G  P+   Y I++N  C   ++ EA    +
Sbjct: 217 VVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFK 276

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM  K  NP V   ++L+ GL   G + ++ ++V++M   G  +D+ T+NSL+  +CK+ 
Sbjct: 277 EMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNH 336

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++  + +   +   G+  +V TY  LI  + K G +++A+ +   ++ +G+      Y 
Sbjct: 337 HLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYN 396

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I G+ ++G FD+A    S M+     P+   Y  +I      G  V+    L  M   
Sbjct: 397 VMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVR 456

Query: 292 GLT 294
           GL+
Sbjct: 457 GLS 459



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 140/292 (47%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S II+   K   V +A  ++++  A      V  ++ L+ ALC+ +    A  L+  M++
Sbjct: 151 STIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMK 210

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           KG  P+  TY  +++ +C   ++ +A      M  +G  P V   ++++ GL     ++ 
Sbjct: 211 KGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDE 270

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  +  +M  +    D+ T+N LI+ +CK G++   +E+   +  +G   D+ TY  L+ 
Sbjct: 271 AMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLH 330

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A+ K   +D+A  L+  + + G +P    Y  +I G+ + G+ +DA+  F E+  +G+  
Sbjct: 331 ALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHI 390

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
               Y ++I    + G F EA   L  M +    P +  ++ +   L   G+
Sbjct: 391 TVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442



 Score = 94.0 bits (232), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 134/294 (45%), Gaps = 6/294 (2%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A+ +F +      +  ++    L+   C        ++++ ++++ G+ P+  T+  L+ 
Sbjct: 29  AISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIK 88

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
             C +G+  EA  F   +   GF        +L+ GL   G   +A QM+ K        
Sbjct: 89  GMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNA--- 145

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           D+  ++++I+++CK   V     +Y  +   G+  +V T+ IL+ A+ K     +A  LL
Sbjct: 146 DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLL 205

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             +++ G KP    Y  I+ G     Q + A   F+ M  +G  PN   Y ++I    + 
Sbjct: 206 AMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKK 265

Query: 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
            R  EA N   EM    + P    ++++ DGL   GK  ++  +EL++  +RS+
Sbjct: 266 KRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGK--ISTSLELVD-EMRSI 316



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 142/311 (45%), Gaps = 17/311 (5%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC------EVKLFHGAY 72
           TL++++  +   G +     +  K      +   + + +L+  +C      E  LFH   
Sbjct: 47  TLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHD-- 104

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
                ++  GF  D+ +YAIL+N  C  G+ R A + L++      N  V     ++  L
Sbjct: 105 ----HVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRK---TWVNADVVMYSTIIDSL 157

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               ++  A ++ ++MI +G   ++ TF+ L++ +CK  + +  + +   + K G+  +V
Sbjct: 158 CKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNV 217

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  ++        +++A  + + +V++G +P    Y  II G+ ++ + D+A   F E
Sbjct: 218 VTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKE 277

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M  K   P+   Y +LI    + G+   +   + EM  +G T     ++ +   L  C  
Sbjct: 278 MHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL--CKN 335

Query: 313 HDLAEKIELLE 323
           H L + I L++
Sbjct: 336 HHLDQAITLVK 346



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 62/149 (41%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           ++ M+    +V   T + ++    K+  +D A+ +  +      Q  V  Y +L+  LC+
Sbjct: 310 VDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCK 369

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 AY + + ++ +G+     TY +++N  C  G   EA   L  M D    P    
Sbjct: 370 DGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVS 429

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
            + ++  L   G      +++  MI +G 
Sbjct: 430 YETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score = 45.1 bits (105), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 50/107 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G +++A  +F +         V  YN ++  LC+  LF  A AL+ RM
Sbjct: 359 TYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRM 418

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                +PD  +Y  ++ A    G+  +  + L  M  +G +  ++ +
Sbjct: 419 EDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLSKRLKKK 465


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS+     + +I+   K G +  A +   +    N     ++YN  +  LC +  F  A 
Sbjct: 515 LSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAK 574

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           + +  M   G  PD+ TY  ++ + C  G+  +A + L EM      P +   + LV GL
Sbjct: 575 SFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGL 634

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E AK ++N+M+  GF     T   +++   +S  ++  ++++  +   GL AD+
Sbjct: 635 FGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + Y  L+  +   GM  +A  +L  ++  G  P    +  +I G  +    D+AF  +++
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           M  +   PN   +  L+      GR  EA   L+EM + GL P +  +D++  G
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATG 808



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 2/294 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++  GK G  D   +      + N     + Y  L+ ALC+      A  ++  M
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM 405

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ ++N +   G + +A E+ + M ++G NP V     L+ G       
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A ++ + M+ +G  ++    +SL+  + ++G++E  + ++      GL  D   Y  L
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +  AF+    L++    P   +Y   I  +   G+F +A  F +EM+  G 
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            P++  Y TM+++ C R G   +A   L EM    + P    ++ +  GL   G
Sbjct: 586 KPDQSTYNTMIVSHC-RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTG 638



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 131/300 (43%), Gaps = 1/300 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++ ++    ++G VD A  + ++    +    V+ +N+L+   C V     A ++  RM
Sbjct: 137 TVNTLLAGLCRNGQVDAAAALADRGGGIHALD-VIGWNTLIAGYCRVGDTPAALSVADRM 195

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +G   D   Y  LV  +C +G++  A+  L  M + G +P V      +        +
Sbjct: 196 TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGV 255

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E A  +   M++ G +LD+ T ++L+  +C+ G       ++  + K+G   +  TY  L
Sbjct: 256 EEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTL 315

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I +++KAG   E   LL  +V  G       Y  ++  + ++G+ D+             
Sbjct: 316 IDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   YT+LI    +     EA   L+EM E  ++P    F  V +G    G  D A +
Sbjct: 376 SPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATE 435



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 124/289 (42%), Gaps = 34/289 (11%)

Query: 56  NSLLFALCEVKLFHGAYALIR---------------------------RMIRKGFVPDKR 88
           N+LL++ C ++L   A AL+R                            M ++G   D  
Sbjct: 77  NALLYSHCRLRLLRPAIALLRSSRPTTVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGV 136

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           T   L+   C +G++  A      ++D+G       V G + L+ G    G   +A  + 
Sbjct: 137 TVNTLLAGLCRNGQVDAA----AALADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVA 192

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
           ++M  QG  +D+  +N+L+   C++G+V+    +   + + G+  +V+TY   I    + 
Sbjct: 193 DRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT 252

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
             ++EAF L   +V +G        + ++ G+ R G+F +A+  F EM   G  PN   Y
Sbjct: 253 KGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTY 312

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             LI    + GR  E  + L EM   G+      +  + D L   GK D
Sbjct: 313 CTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++ ++    + +  ++ YN+L+  L     
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGA 639

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+  GF P   T+  ++ A   S ++    +  + M + G +  +   + 
Sbjct: 640 VEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT 699

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q L   G    A  ++ +M+  G   D  TFN+LI   CKS  ++     Y  +    
Sbjct: 700 LLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +++T+  L+  +   G I EA  +L  + + G +P    Y  +  G  ++    +A 
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAM 819

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EM  KG  P    Y  LI+   + G   +A     +M + G+ P S  +D++  G
Sbjct: 820 RLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 35/282 (12%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL-------------------- 62
           +I  + + G    A+ V ++ TA      V+ YN+L+                       
Sbjct: 175 LIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAG 234

Query: 63  ---------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107
                          C  K    A+ L   M+R G + D  T + LV   C  G+  EA 
Sbjct: 235 VDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAY 294

Query: 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167
              +EM   G  P       L+  L  AG  +    ++ +M+ +G V+DL T+ +L++ +
Sbjct: 295 ALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWL 354

Query: 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            K G+ +   +         L  +  TY +LI A+ KA  +DEA ++L  + E    P  
Sbjct: 355 GKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNV 414

Query: 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             ++ +I G  +RG  D A  +   MK +G  PN   Y  LI
Sbjct: 415 VTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456



 Score = 85.1 bits (209), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 6/276 (2%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREAQEFLQEM 113
           N+LL  LC       A AL  R    G +   D   +  L+  +C  G    A      M
Sbjct: 139 NTLLAGLCRNGQVDAAAALADR---GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRM 195

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
           + +G    V G + LV G   AG +++A+ +++ M + G   ++ T+   I   C++  V
Sbjct: 196 TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGV 255

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           E   ++Y  + + G+  DV T   L+  + + G   EA+ L   + + G  P    Y  +
Sbjct: 256 EEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTL 315

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I  + + G+  +      EM  +G   +   YT L+   G+ G+  E  + L       L
Sbjct: 316 IDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
           +P    + ++ D L      D AE++ LLE+  +S+
Sbjct: 376 SPNGVTYTVLIDALCKAHNVDEAEQV-LLEMEEKSI 410



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 160/396 (40%), Gaps = 73/396 (18%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   +  +  T +  I  + +   V+ A +++           V+  ++L+  LC 
Sbjct: 227 LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCR 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------- 117
              F  AYAL R M + G  P+  TY  L+++   +G+ +E    L EM  +G       
Sbjct: 287 DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVT 346

Query: 118 ----------------------------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                                        +P      +L+  L  A  ++ A+Q++ +M 
Sbjct: 347 YTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME 406

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++    ++ TF+S+I    K G ++   E    + + G+  +V TY  LI    K    D
Sbjct: 407 EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466

Query: 210 EAFRLLHNLVEDGHKP----FPSL-------------------------------YAPII 234
            A  + H+++ +G K       SL                               Y  +I
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLI 526

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+F+ G    AF F  E+  +   P+  VY + I      G+F EA ++L EM  MGL 
Sbjct: 527 DGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           P    ++ +   + +C K + A+ ++LL E+ + S+
Sbjct: 587 PDQSTYNTMI--VSHCRKGETAKALKLLHEMKMSSI 620



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 4/285 (1%)

Query: 14  SVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           S+ P  ++   L+   FG  G V+ A  + N+  +       L +  +L A  + +    
Sbjct: 619 SIKPNLITYNTLVAGLFGT-GAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
              +   M+  G   D   Y  L+   C  G  R+A   L+EM   G  P     + L+ 
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   + +L++A     +M+ Q    ++ TFN+L+  +   G +     +   + K GL  
Sbjct: 738 GHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEP 797

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY IL     K     EA RL   +V  G  P  S Y  +I    + G    A   F
Sbjct: 798 NNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELF 857

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+ +G  P    Y +L++   R     E    L +M E G +P
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSP 902



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            +MK   ++ +  T   +I+ F K    D A+EV++       +    + +SL+  L + 
Sbjct: 438 RMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQN 497

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL +     G   D   Y  L++    +G M  A +F QE+ D+   P     
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ +  L   G  + AK  + +M   G   D  T+N++I + C+ GE    +++ + +  
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  ++ TY  L+  +   G +++A  LL+ +V  G  P    +  +++   +  + D 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                  M   G   +  VY  L+ +    G   +A   L EM   G+ P +  F+ +  
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 306 G 306
           G
Sbjct: 738 G 738



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 12/143 (8%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC-------VLLYNSLLFALCEVKL 67
           + P  L+  I   G HG   N VE         C+         V  YN+L+    +  +
Sbjct: 795 LEPNNLTYDILATG-HGKQSNKVEAMR----LYCEMVGKGFVPKVSTYNALISDFTKAGM 849

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L + M ++G  P   TY ILV+ W       E ++ L++M +KGF+P       
Sbjct: 850 MTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSF 909

Query: 128 LVQGLLNAGYLESAKQMVNKMIK 150
           + +     G    A++++  + +
Sbjct: 910 ICRAFSKPGMTWQAQRLLKNLYR 932


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 123/269 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+     +      + L   M 
Sbjct: 126 FNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMH 185

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM DKG  P       L+ G    G ++
Sbjct: 186 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVD 245

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+L   +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 246 LAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 305

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +    +Y  +I G+ + G+  DA     EM   G  
Sbjct: 306 DGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           PN   YTM+I    + G     +  L EM
Sbjct: 366 PNXGTYTMIINEFCKKGDVWTGSKLLKEM 394



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 122/270 (45%), Gaps = 2/270 (0%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
            +N L+   C+      A ++   + + G  P   ++  L+N +   G + E       M
Sbjct: 125 FFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAM 184

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V    +L+ GL     ++ A ++ ++M+ +G V +  TF +LI+  CK+G V
Sbjct: 185 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 244

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  +E+Y  +    L  D+ TY  L   + K G + +A  L+  +   G KP    Y  +
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 304

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G  + G  + AF     M  +    +  VYT LI+   + GR V+A   L EM  +GL
Sbjct: 305 IDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGL 364

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            P    + ++ +    C K D+    +LL+
Sbjct: 365 KPNXGTYTMIINEF--CKKGDVWTGSKLLK 392



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +           +     +L  L ++K F   +   + ++
Sbjct: 56  FSGLITXYLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEIL 115

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++ +C  G +R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 116 ECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLD 175

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 176 EGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLI 235

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +  G+ ++G    A     EM +KG  
Sbjct: 236 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLK 295

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI  C + G    A  +   M +  +      +  +  GL   G+   AEK+
Sbjct: 296 PDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 355

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 356 LREMLSVGLK 365



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 112/249 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + + G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 147 DAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKE 206

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+ KG VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 207 SKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 266

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L  GL   G L+ A  ++++M  +G   D  T+ +LI+  CK G++E   E    + +
Sbjct: 267 NTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQ 326

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 327 ENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWT 386

Query: 246 AFCFFSEMK 254
                 EM+
Sbjct: 387 GSKLLKEMQ 395



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 136/294 (46%), Gaps = 21/294 (7%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMI-RKG-------FVP----------DKRTYAILVNA 96
           Y +++  LC  ++   A +LI+ ++ RKG       F            D   ++ L+  
Sbjct: 3   YCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITX 62

Query: 97  WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156
           +  SG +R+A E  +   +  F  P+     +++ L+   Y +       ++++ G+   
Sbjct: 63  YLESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPAS 122

Query: 157 LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
           L  FN L+   CK G++     ++ ++ K GL   V ++  L+    + G +DE FRL +
Sbjct: 123 LYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKN 182

Query: 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
            +   G +P    Y+ +I G+ +  + DDA   F EM  KG  PN   +T LI    + G
Sbjct: 183 AMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNG 242

Query: 277 RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           R   A     +M    L+P    ++ +T GL  C K DL +  +L+ E+S++ +
Sbjct: 243 RVDLAMEIYKQMLSQSLSPDLITYNTLTYGL--CKKGDLKQAHDLIDEMSMKGL 294



 Score = 43.9 bits (102), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 51/109 (46%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   ++Y +L+  LC+
Sbjct: 286 IDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQ 345

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM
Sbjct: 346 EGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEM 394


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 135/294 (45%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LS+     + +I+   K G +  A +   +    N     ++YN  +  LC +  F  A 
Sbjct: 515 LSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAK 574

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           + +  M   G  PD+ TY  ++ + C  G+  +A + L EM      P +   + LV GL
Sbjct: 575 SFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGL 634

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G +E AK ++N+M+  GF     T   +++   +S  ++  ++++  +   GL AD+
Sbjct: 635 FGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADI 694

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
           + Y  L+  +   GM  +A  +L  ++  G  P    +  +I G  +    D+AF  +++
Sbjct: 695 TVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQ 754

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           M  +   PN   +  L+      GR  EA   L+EM + GL P +  +D++  G
Sbjct: 755 MLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATG 808



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 2/300 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++  GK G  D   +      + N     + Y  L+ ALC+      A  ++  M
Sbjct: 346 TYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM 405

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             K   P+  T++ ++N +   G + +A E+ + M ++G NP V     L+ G       
Sbjct: 406 EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ 465

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++A ++ + M+ +G  ++    +SL+  + ++G++E  + ++      GL  D   Y  L
Sbjct: 466 DAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTL 525

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KAG +  AF+    L++    P   +Y   I  +   G+F +A  F +EM+  G 
Sbjct: 526 IDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 259 PPNRPVY-TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P++  Y TM+++ C R G   +A   L EM    + P    ++ +  GL   G  + A+
Sbjct: 586 KPDQSTYNTMIVSHC-RKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAK 644



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 128/299 (42%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   L     T + +I    + G    A+++ ++    + +  ++ YN+L+  L     
Sbjct: 580 MRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGA 639

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L+  M+  GF P   T+  ++ A   S ++    +  + M + G +  +   + 
Sbjct: 640 VEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNT 699

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+Q L   G    A  ++ +M+  G   D  TFN+LI   CKS  ++     Y  +    
Sbjct: 700 LLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQN 759

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  +++T+  L+  +   G I EA  +L  + + G +P    Y  +  G  ++    +A 
Sbjct: 760 ISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAM 819

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
             + EM  KG  P    Y  LI+   + G   +A     +M + G+ P S  +D++  G
Sbjct: 820 RLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSG 878



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 117/289 (40%), Gaps = 37/289 (12%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL------------- 62
           S  TLSL+  +    G    A+ V ++ TA      V+ YN+L+                
Sbjct: 170 SAGTLSLL--DIAGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVL 227

Query: 63  ----------------------CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS 100
                                 C  K    A+ L   M+R G + D  T + LV   C  
Sbjct: 228 DMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRD 287

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           G+  EA    +EM   G  P       L+  L  AG  +    ++ +M+ +G V+DL T+
Sbjct: 288 GRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTY 347

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            +L++ + K G+ +   +         L  +  TY +LI A+ KA  +DEA ++L  + E
Sbjct: 348 TALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
               P    ++ +I G  +RG  D A  +   MK +G  PN   Y  LI
Sbjct: 408 KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLI 456



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 160/396 (40%), Gaps = 73/396 (18%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +++MK   +  +  T +  I  + +   V+ A +++           V+  ++L+  LC 
Sbjct: 227 LDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCR 286

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG------- 117
              F  AYAL R M + G  P+  TY  L+++   +G+ +E    L EM  +G       
Sbjct: 287 DGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVT 346

Query: 118 ----------------------------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
                                        +P      +L+  L  A  ++ A+Q++ +M 
Sbjct: 347 YTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEME 406

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++    ++ TF+S+I    K G ++   E    + + G+  +V TY  LI    K    D
Sbjct: 407 EKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQD 466

Query: 210 EAFRLLHNLVEDGHKP----FPSL-------------------------------YAPII 234
            A  + H+++ +G K       SL                               Y  +I
Sbjct: 467 AALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLI 526

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+F+ G    AF F  E+  +   P+  VY + I      G+F EA ++L EM  MGL 
Sbjct: 527 DGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLK 586

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKIELL-EVSLRSV 329
           P    ++ +   + +C K + A+ ++LL E+ + S+
Sbjct: 587 PDQSTYNTMI--VSHCRKGETAKALKLLHEMKMSSI 620



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 119/287 (41%), Gaps = 30/287 (10%)

Query: 56  NSLLFALCEVKLFHGAYALIR---------------------------RMIRKGFVPDKR 88
           N+LL++ C ++L   A AL+R                            M ++G   D  
Sbjct: 77  NALLYSHCRLRLLRPAIALLRSSRPTTVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGV 136

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL-VQGLLNAGYLESAKQMVNK 147
           T   L+   C +G++  A          G  P +     L +  +   G   +A  + ++
Sbjct: 137 TVNTLLAGLCRNGQVDAAAALADRAG--GITPWMSSAGTLSLLDIAGFGDTPAALSVADR 194

Query: 148 MIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207
           M  QG  +D+  +N+L+   C++G+V+    +   + + G+  +V+TY   I    +   
Sbjct: 195 MTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKG 254

Query: 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTM 267
           ++EAF L   +V +G        + ++ G+ R G+F +A+  F EM   G  PN   Y  
Sbjct: 255 VEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCT 314

Query: 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           LI    + GR  E  + L EM   G+      +  + D L   GK D
Sbjct: 315 LIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 115/285 (40%), Gaps = 4/285 (1%)

Query: 14  SVSPQTLS---LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           S+ P  ++   L+   FG  G V+ A  + N+  +       L +  +L A  + +    
Sbjct: 619 SIKPNLITYNTLVAGLFGT-GAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
              +   M+  G   D   Y  L+   C  G  R+A   L+EM   G  P     + L+ 
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G   + +L++A     +M+ Q    ++ TFN+L+  +   G +     +   + K GL  
Sbjct: 738 GHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEP 797

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           +  TY IL     K     EA RL   +V  G  P  S Y  +I    + G    A   F
Sbjct: 798 NNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELF 857

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +M+ +G  P    Y +L++   R     E    L +M E G +P
Sbjct: 858 KDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSP 902



 Score = 77.4 bits (189), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
            +MK   ++ +  T   +I+ F K    D A+EV++       +    + +SL+  L + 
Sbjct: 438 RMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQN 497

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A AL +     G   D   Y  L++    +G M  A +F QE+ D+   P     
Sbjct: 498 GKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVY 557

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           ++ +  L   G  + AK  + +M   G   D  T+N++I + C+ GE    +++ + +  
Sbjct: 558 NVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKM 617

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  ++ TY  L+  +   G +++A  LL+ +V  G  P    +  +++   +  + D 
Sbjct: 618 SSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDV 677

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
                  M   G   +  VY  L+ +    G   +A   L EM   G+ P +  F+ +  
Sbjct: 678 ILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALIL 737

Query: 306 G 306
           G
Sbjct: 738 G 738



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 102/229 (44%), Gaps = 1/229 (0%)

Query: 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160
           G    A      M+ +G    V G + LV G   AG +++A+ +++ M + G   ++ T+
Sbjct: 183 GDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATY 242

Query: 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
              I   C++  VE   ++Y  + + G+  DV T   L+  + + G   EA+ L   + +
Sbjct: 243 TPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDK 302

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280
            G  P    Y  +I  + + G+  +      EM  +G   +   YT L+   G+ G+  E
Sbjct: 303 VGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDE 362

Query: 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329
             + L       L+P    + ++ D L      D AE++ LLE+  +S+
Sbjct: 363 VKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQV-LLEMEEKSI 410


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 124/276 (44%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVP 414



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 115/256 (44%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  + L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E   +M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ + ++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYVPS 415



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        ++  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++  G  P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 3/247 (1%)

Query: 84  VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143
           + D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +    
Sbjct: 63  ISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWG 122

Query: 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS 203
              + ++ G+   L  FN L+ +  K GE+     ++ ++ K GL   V ++  L+    
Sbjct: 123 FYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYI 182

Query: 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
           K G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN  
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL- 322
            +T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L  
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLXD 300

Query: 323 EVSLRSV 329
           E+S++ +
Sbjct: 301 EMSMKGL 307



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 50/104 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++ A E   +    N +   + Y +L+  LC+      A  ++R M
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREM 372

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           +  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 373 LSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYVPSV 416


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 133/298 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  + K G V  A E+        C+  V  +N L+  LC V   + A  L++RM
Sbjct: 373 TYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRM 432

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  PD  +Y +L++  C  G M  A + L  M+     P       ++      G  
Sbjct: 433 LDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKA 492

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A   +  M+++G  LD  T  +LI+ +CK G+    + +  ++ K+ +     +  ++
Sbjct: 493 DVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVI 552

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +SK   + E   +L  + + G  P    Y  ++ G+ R G    +F     MK+ G 
Sbjct: 553 LDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGC 612

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   YT++I    + GR  EA   L  M + G++P    + ++  G  N GK D A
Sbjct: 613 LPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRA 670



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 1/279 (0%)

Query: 35  NAVEVFNKCTA-FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           +A++VF+  +    C    + Y+ L+  LCEV     A+ L  +M  KG  P  RTY +L
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           + A C  G + +A     EM  +G  P V    +L+ GL   G +E A  +  KM+K   
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI 367

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
              + T+N+LI   CK G V    E+   + K     +V T+  L+  + + G   +A  
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVH 427

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           LL  ++++G  P    Y  +I G+ R G  + A+   S M      P+   +T +I    
Sbjct: 428 LLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFC 487

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           + G+   A+ +L  M   G++        + DG+   GK
Sbjct: 488 KQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGK 526



 Score =  107 bits (268), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 139/310 (44%), Gaps = 4/310 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S +T +++I+     GL+D A  +F++     C+  V  Y  L+  LC       A  + 
Sbjct: 300 STRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVC 359

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           R+M++    P   TY  L+N +C  G++  A E L  M  +   P VR  + L++GL   
Sbjct: 360 RKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRV 419

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G    A  ++ +M+  G   D+ ++N LI+ +C+ G +    ++  S+    +  D  T+
Sbjct: 420 GKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTF 479

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             +I A  K G  D A   L  ++  G          +I G+ + G+  DA  F  E  +
Sbjct: 480 TAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDAL-FILETLV 538

Query: 256 KGHPPNRP-VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
           K      P    +++ M  +G +  E    L ++ ++GL P    +  + DGL   G  D
Sbjct: 539 KMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSG--D 596

Query: 315 LAEKIELLEV 324
           +     +LE+
Sbjct: 597 ITGSFRILEL 606



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 4/308 (1%)

Query: 13  LSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           ++ +P ++S  ++I    + G ++ A  + ++     CQ     Y  L+ ALC+  L   
Sbjct: 260 VTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDK 319

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A+ L   MI +G  P+  TY +L++  C  GK+ EA    ++M      P V   + L+ 
Sbjct: 320 AFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALIN 379

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           G    G +  A +++  M K+    ++ TFN L+E +C+ G+    V +   +   GL  
Sbjct: 380 GYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSP 439

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+ +Y +LI  + + G ++ A++LL ++     +P    +  II    ++G+ D A  F 
Sbjct: 440 DIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFL 499

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KN 309
             M  KG   +    T LI    + G+  +A   L  + +M +       +++ D L K 
Sbjct: 500 GLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKG 559

Query: 310 CG-KHDLA 316
           C  K +LA
Sbjct: 560 CKVKEELA 567



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 119/271 (43%), Gaps = 38/271 (14%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y+SLL +L ++ L   AY   RRM   GFV     Y  +VNA C +G             
Sbjct: 163 YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNG------------- 209

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                                 Y E+A+  ++K++K GFVLD     SL+   C+   + 
Sbjct: 210 ----------------------YTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLR 247

Query: 175 FCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
             ++++  + K   CA  S +Y ILI  + + G ++EAF L   + E G +P    Y  +
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           IK +  RG  D AF  F EM  +G  PN   YT+LI    R G+  EA     +M +  +
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI 367

Query: 294 TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
            P    ++ + +G   C    +    ELL V
Sbjct: 368 FPSVITYNALINGY--CKDGRVVPAFELLTV 396



 Score = 84.0 bits (206), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 127/271 (46%), Gaps = 3/271 (1%)

Query: 2   WKTIELMKP-YNLSVSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58
           +K + L+K   +  +SP  +S  ++I+   + G ++ A ++ +    F+ +   L + ++
Sbjct: 423 YKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAI 482

Query: 59  LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118
           + A C+      A A +  M+RKG   D+ T   L++  C  GK R+A   L+ +     
Sbjct: 483 INAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRI 542

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
                  ++++  L     ++    M+ K+ K G V  + T+ +L++ + +SG++     
Sbjct: 543 LTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFR 602

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
           +   +   G   +V  Y I+I  + + G ++EA +LL  + + G  P    Y  ++KG  
Sbjct: 603 ILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYV 662

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             G+ D A      M  +G+  N  +Y+ L+
Sbjct: 663 NNGKLDRALETVRAMVERGYELNDRIYSSLL 693



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 107/242 (44%), Gaps = 30/242 (12%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E +    +  +P +L++I++   K   V   + +  K         V+ Y +L+  L  
Sbjct: 534 LETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIR 593

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                G++ ++  M   G +P+   Y I++N  C  G++ EA++ L  M D G +P    
Sbjct: 594 SGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVT 653

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE-------TICKSGEVEF-- 175
             ++V+G +N G L+ A + V  M+++G+ L+   ++SL++        I  S E     
Sbjct: 654 YTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSD 713

Query: 176 ---------CVEMYYSV------CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                    C+    SV      C  GLC        L+  + K G  DE+  L+ N++E
Sbjct: 714 IALRETDPECINELISVVEQLGGCISGLCI------FLVTRLCKEGRTDESNDLVQNVLE 767

Query: 221 DG 222
            G
Sbjct: 768 RG 769



 Score = 40.4 bits (93), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      +  L++ ++ +G   +K    I++ ++CS  K  +  E +  +   G
Sbjct: 745 LVTRLCKEGRTDESNDLVQNVLERGVFLEK-AMDIIMESYCSKKKHTKCMELITLVLKSG 803

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P  +   L++QGL   G  E A+++V +++    V++     + +E + +  E   C 
Sbjct: 804 FVPSFKSFCLVIQGLKKEGDAERARELVMELLTSNGVVEKSGVLTYVECLMEGDETGDCS 863

Query: 178 EM 179
           E+
Sbjct: 864 EV 865


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 1/287 (0%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V   TL+LII  F +  LV+ AV  F+K T       ++ Y+S++  LC+      A+ L
Sbjct: 277 VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFEL 336

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           +  M++ G+ P+  T+  L++  C  G    A + FL+ +    + P V     ++ G  
Sbjct: 337 LEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYC 396

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
               L  A+ +  +M +QG V +  T+ +LI+  CK+G      E+   +   G   +  
Sbjct: 397 KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 456

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           TY  ++  + K G  +EAF+LL+   ++  +     Y  +I    +R   + A  F ++M
Sbjct: 457 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 516

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
              G  P+  +YT LI    R     ++     E+ ++GL P    +
Sbjct: 517 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETY 563



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 7/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I    K G  + A  +F K   + N +  V  Y +++   C+ +    A  L  R
Sbjct: 351 THTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER 410

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G VP+  TY  L++  C +G   +A E ++ MS++GF P     + +V GL   G 
Sbjct: 411 MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 470

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
            E A +++N   +     D  T+  LI   CK  ++   +     + K+G   D+  Y  
Sbjct: 471 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 530

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A  +  M+ ++ +L   +++ G  P    Y  +I G  R  +   A  FF +M   G
Sbjct: 531 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 590

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
             P+   Y  LI+   +  R  EA      M + GL+P  ++R    VT   + C   D 
Sbjct: 591 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTR----VTLTYEYCKTEDF 646

Query: 316 AEKIELLE 323
           A  + +LE
Sbjct: 647 ASAMVILE 654



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 3/262 (1%)

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           E+     A  +I  M  +G V   R    ++        +  A     EMS +G  P   
Sbjct: 186 EIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSC 245

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               ++ G    G +  A + + +M+++GFV+D  T   +I   C+   V   V  ++ V
Sbjct: 246 TYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKV 305

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K+GL  ++  Y  +I  + K G + +AF LL  +V++G KP    +  +I G+ ++G  
Sbjct: 306 TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT 365

Query: 244 DDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           + AF  F ++ +   + PN   YT +I+   +  +   A      M E GL P +  +  
Sbjct: 366 ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTT 425

Query: 303 VTDGLKNCGKHDLAEKIELLEV 324
           + DG  +C   + ++  EL+E+
Sbjct: 426 LIDG--HCKAGNFSKAYELMEL 445


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMP 414



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 118/256 (46%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G+ P+
Sbjct: 400 GSKLLKEMQRDGYMPS 415



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++     P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ +  K GE+     ++ ++ K  L   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 54/118 (45%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G+ P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYMPSV 416


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 136/290 (46%), Gaps = 2/290 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   K G +D A+E+            V+LY +L+   C          L   M
Sbjct: 70  TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM 129

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KG   +  TY+ LV+  C  G+ +EA   L  M++ G +P V     L+ GL   G  
Sbjct: 130 LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRA 189

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  ++N M+++G      T+N L+  +CK G V    ++   + + G  ADV TY  L
Sbjct: 190 THAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTL 249

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAFCFFSEMKIK 256
           +  +   G +DEA +L +++ ++ +   P+++    +I G+ + G+   A     +M  K
Sbjct: 250 MKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKK 309

Query: 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           G   N   Y ML+  C + G+  EA     ++ ++G  P S  + ++ DG
Sbjct: 310 GSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDG 359



 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 2/270 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ YN+L+  LC+ K    A  L+  M   G  P+  T   L++  C  G+M EA E L+
Sbjct: 33  IVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLE 92

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KGF+  V     L+ G  N G L+  K++ ++M+ +G   ++ T++ L+  +C+ G
Sbjct: 93  AMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLG 152

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           + +    +  ++ + G+  DV TY  LI  + K G    A  LL+ +VE G +P    Y 
Sbjct: 153 QWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYN 212

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM--T 289
            ++ G+ + G   DAF     M  KG   +   Y  L+      G+  EA      M   
Sbjct: 213 VLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDN 272

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           E  L P    F+++  GL   G+   A KI
Sbjct: 273 ENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 124/264 (46%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N +L  LC       A  LIR M RK   PD  +Y  L+N  C + K++EA   L EM  
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 116 KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175
            G  P       L+ GL   G ++ A +++  M K+GF  D+  + +LI   C +G ++ 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDR 121

Query: 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
             E++  +   G+ A+V TY  L+  + + G   EA  +L+ + E G  P    Y  +I 
Sbjct: 122 GKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLID 181

Query: 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           G+ + G+   A    + M  KG  P+   Y +L++   + G  ++A   L  M E G   
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 241

Query: 296 ISRCFDLVTDGLKNCGKHDLAEKI 319
               ++ +  GL + GK D A K+
Sbjct: 242 DVVTYNTLMKGLCDKGKVDEALKL 265



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 122/252 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +  AV++  K         ++ YN LL    +      A  L +++
Sbjct: 282 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 341

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GFVP+  TY+IL++ +C    +  A+    EM   G NP +   + L+  L   G L
Sbjct: 342 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 401

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK +  +M       D+ +FN++I+   K+G+ +F  E+   + ++GL  D  T+  L
Sbjct: 402 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G +DEA   L  +V  G  P   +Y  ++KG+  +G   +      +M  KG 
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 259 PPNRPVYTMLIT 270
             +R + + ++T
Sbjct: 522 VLDRKIVSTILT 533



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S +  T S ++    + G    A  V N          V+ Y  L+  LC+      A 
Sbjct: 134 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 193

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+ KG  P   TY +L++  C  G + +A + L+ M +KG    V   + L++GL
Sbjct: 194 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 253

Query: 133 LNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            + G ++ A ++ N M      L  ++ TFN LI  +CK G +   V+++  + K G C 
Sbjct: 254 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 313

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++ TY +L+    KAG I EA  L   +++ G  P    Y+ +I G  +    + A   F
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 373

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  P    Y  L+    + G   +A +   EM      P    F+ + DG    
Sbjct: 374 CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 433

Query: 311 GKHDLAEKIE--LLEVSLR 327
           G     ++++  ++E+ LR
Sbjct: 434 GDFQFVKELQMKMVEMGLR 452



 Score =  100 bits (250), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC----VLLYNS 57
           +K + +M          T + +++     G VD A+++FN  + F+ + C    V  +N 
Sbjct: 228 FKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFN--SMFDNENCLEPNVFTFNM 285

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      A  + R+M++KG   +  TY +L+     +GK++EA E  +++ D G
Sbjct: 286 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 345

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P      +L+ G      L  AK +  +M   G    L  +N+L+ ++CK G +E   
Sbjct: 346 FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 405

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  +       D+ ++  +I    KAG       L   +VE G +P    ++ +I  +
Sbjct: 406 SLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRL 465

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            + G+ D+A      M   G  P+  VY  L+      G   E  N L +M   G
Sbjct: 466 SKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 520


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 142/321 (44%), Gaps = 2/321 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L  S  T +++I      G V  AVE+ +       +  V  Y  L+  LC++  
Sbjct: 137 MLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGK 196

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +R+M  + + P+   Y+ +++  C  G + EA     EMS KG  P +     
Sbjct: 197 TSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTC 256

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+QGL N G  + A  ++++M+K G + DL++ N L++ +CK G++     +   +  +G
Sbjct: 257 LIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVG 316

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              DV TY  LI        +DEA R+   +V  G  P    Y  +I G  +    + A 
Sbjct: 317 EVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAM 376

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
               EM   G  P+   +T LI    + GR + A    + M + G  P  +   ++ DGL
Sbjct: 377 HLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGL 436

Query: 308 KNCGKHDLAEKIELLEVSLRS 328
             C    L+E + L     +S
Sbjct: 437 --CKSQLLSEALSLFHAMEKS 455



 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 122/251 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+ +     +D A  VF    +  C   ++ Y SL+   C++K  + A  L+  M
Sbjct: 323 TYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEM 382

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I+ GF PD  T+  L+  +C  G+   A+E    M   G  P ++   +++ GL  +  L
Sbjct: 383 IKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLL 442

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + + M K    L++  ++ +++ +C +G++   +E++  +   GL  +V  Y I+
Sbjct: 443 SEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIM 502

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I   +K G++D+A  LL N+ E+G  P    Y   ++G+    +   +  + + M+ KG 
Sbjct: 503 INGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGF 562

Query: 259 PPNRPVYTMLI 269
             +     M+I
Sbjct: 563 SVDATTTEMII 573



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 131/299 (43%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           +T  ++I    K G    AV    K    N    V++Y++++  LC+  L   A  L   
Sbjct: 182 KTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLE 241

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  KG  P+  TY  L+   C+ G+ +EA   L EM   G  P ++  ++LV  L   G 
Sbjct: 242 MSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGK 301

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           +  AK ++  MI  G V D+ T+NSLI+  C   +++    ++  +   G   D+  Y  
Sbjct: 302 IMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTS 361

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI    K   I++A  LL  +++ G  P    +  +I G  + G+   A   F  M   G
Sbjct: 362 LIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYG 421

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PN     +++    +     EA +    M +  L      + ++ DG+ + GK + A
Sbjct: 422 QVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTA 480



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 149/350 (42%), Gaps = 37/350 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N + +    S +++   K GLV  A+ +  + +    +  ++ Y  L+  LC    
Sbjct: 207 MEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGR 266

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK------------------------- 102
           +  A +L+  M++ G +PD ++  ILV+  C  GK                         
Sbjct: 267 WKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNS 326

Query: 103 ----------MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
                     M EA    + M  +G  P +     L+ G      +  A  ++++MIK G
Sbjct: 327 LIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVG 386

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D+ T+ +LI   C+ G      E++ ++ K G   ++ T  I++  + K+ ++ EA 
Sbjct: 387 FTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEAL 446

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L H + +        +Y+ I+ GM   G+ + A   FS +  KG   N   YT++I   
Sbjct: 447 SLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGF 506

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
            + G   +A + L  M E G  P S  +++   GL    + ++A  I+ L
Sbjct: 507 AKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGL--VAEREIARSIKYL 554



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 138/315 (43%), Gaps = 6/315 (1%)

Query: 6   ELMKPYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           E+MK   + V P  Q+L+++++   K G +  A  V            V  YNSL+   C
Sbjct: 276 EMMK---MGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYC 332

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
                  A  +   M+ +G +PD   Y  L++ WC    + +A   L EM   GF P V 
Sbjct: 333 LQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVV 392

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ G    G   +AK++   M K G V +L+T   +++ +CKS  +   + +++++
Sbjct: 393 TWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAM 452

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            K  L  ++  Y I++  +  AG ++ A  L   L   G +     Y  +I G  ++G  
Sbjct: 453 EKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLL 512

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
           D A    S M+  G  P+   Y + +           +  YL  M + G +  +   +++
Sbjct: 513 DKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMI 572

Query: 304 TDGLK-NCGKHDLAE 317
            + L  N G ++L E
Sbjct: 573 INYLSTNQGDNELRE 587



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 121/286 (42%), Gaps = 36/286 (12%)

Query: 28  GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPD 86
           GK   +D A+  F+     N    V+ +  LL  + ++K +  A +L++ M    G  PD
Sbjct: 51  GKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVKMKHYTTAISLVKEMHSSLGIKPD 110

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                +++N+ C             ++   GF+                        ++ 
Sbjct: 111 TFILNVVINSLCH-----------LKLVAFGFS------------------------VLG 135

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
            M+K G    + TF  LI  +C  G+V   VE+   V K G  +DV TY +LI  + K G
Sbjct: 136 TMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMG 195

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
              EA   L  + E    P   +Y+ ++ G+ + G   +A     EM  KG  PN   YT
Sbjct: 196 KTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYT 255

Query: 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            LI      GR+ EA + L EM +MG+ P  +  +++ D L   GK
Sbjct: 256 CLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGK 301



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 35/294 (11%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           + N ++ +LC +KL    ++++  M++ G  P   T+ IL+N  C  G +  A E +  +
Sbjct: 113 ILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELVDHV 172

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G+   V+   +L+ GL   G    A   + KM ++ +  ++  ++++++ +CK G V
Sbjct: 173 EKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLV 232

Query: 174 E----FCVEM---------------YYSVC----------------KLGLCADVSTYKIL 198
                 C+EM                  +C                K+G+  D+ +  IL
Sbjct: 233 SEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNIL 292

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K G I +A  ++  ++  G  P    Y  +I     + Q D+A   F  M  +G 
Sbjct: 293 VDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGC 352

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            P+   YT LI    +     +A + L EM ++G TP    +  +  G    G+
Sbjct: 353 LPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGR 406


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 132/287 (45%), Gaps = 1/287 (0%)

Query: 15   VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
            V   TL+LII  F +  LV+ AV  F+K T       ++ Y+S++  LC+      A+ L
Sbjct: 864  VDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFEL 923

Query: 75   IRRMIRKGFVPDKRTYAILVNAWCSSGKMREA-QEFLQEMSDKGFNPPVRGRDLLVQGLL 133
            +  M++ G+ P+  T+  L++  C  G    A + FL+ +    + P V     ++ G  
Sbjct: 924  LEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYC 983

Query: 134  NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
                L  A+ +  +M +QG V +  T+ +LI+  CK+G      E+   +   G   +  
Sbjct: 984  KEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTC 1043

Query: 194  TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
            TY  ++  + K G  +EAF+LL+   ++  +     Y  +I    +R   + A  F ++M
Sbjct: 1044 TYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKM 1103

Query: 254  KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
               G  P+  +YT LI    R     ++     E+ ++GL P    +
Sbjct: 1104 FKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETY 1150



 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 7/308 (2%)

Query: 19   TLSLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
            T + +I    K G  + A  +F K   + N +  V  Y +++   C+ +    A  L  R
Sbjct: 938  THTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFER 997

Query: 78   MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
            M  +G VP+  TY  L++  C +G   +A E ++ MS++GF P     + +V GL   G 
Sbjct: 998  MKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 1057

Query: 138  LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
             E A +++N   +     D  T+  LI   CK  ++   +     + K+G   D+  Y  
Sbjct: 1058 AEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTT 1117

Query: 198  LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
            LI A  +  M+ ++ +L   +++ G  P    Y  +I G  R  +   A  FF +M   G
Sbjct: 1118 LIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHG 1177

Query: 258  HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
              P+   Y  LI+   +  R  EA      M + GL+P  ++R    VT   + C   D 
Sbjct: 1178 CAPDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTR----VTLTYEYCKTEDF 1233

Query: 316  AEKIELLE 323
            A  + +LE
Sbjct: 1234 ASAMVILE 1241



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 119/262 (45%), Gaps = 3/262 (1%)

Query: 64   EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            E+     A  +I  M  +G V   R    ++        +  A     EMS +G  P   
Sbjct: 773  EIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSC 832

Query: 124  GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
                ++ G    G +  A + + +M+++GFV+D  T   +I   C+   V   V  ++ V
Sbjct: 833  TYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKV 892

Query: 184  CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
             K+GL  ++  Y  +I  + K G + +AF LL  +V++G KP    +  +I G+ ++G  
Sbjct: 893  TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWT 952

Query: 244  DDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            + AF  F ++ +   + PN   YT +I+   +  +   A      M E GL P +  +  
Sbjct: 953  ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTT 1012

Query: 303  VTDGLKNCGKHDLAEKIELLEV 324
            + DG  +C   + ++  EL+E+
Sbjct: 1013 LIDG--HCKAGNFSKAYELMEL 1032


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 12/316 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K + L+ +  T ++ I+ F + G +  A++VF              Y + +  LC    
Sbjct: 210 LKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLC---- 265

Query: 68  FHG----AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
            HG     + +++ +I      D   Y +++  +CS  K++EA+  L+EM  +GF P V 
Sbjct: 266 LHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVY 325

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ G    G L  A  + ++M+ +G   +    +S+++ + + G        +   
Sbjct: 326 VYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEF 385

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRG 241
            K+G+  D + Y +++ A+ K G ++EA  LL  +   G K  P +  Y  +I G F +G
Sbjct: 386 KKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEM--KGKKMVPDIINYTTVISGYFLKG 443

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           +  DA   + EMK  GH P+   Y +L     R G   EA + L  M   G+ P +   +
Sbjct: 444 KVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHN 503

Query: 302 LVTDGLKNCGKHDLAE 317
           ++ +GL   GK D A+
Sbjct: 504 MIIEGLCIGGKVDDAQ 519



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 112/278 (40%), Gaps = 2/278 (0%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P + S    IE    HG  D   +V            V  Y  ++   C       A 
Sbjct: 250 VTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAE 309

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +++R M ++GF PD   Y  L++ +C  G + +A     EM  KG          ++QGL
Sbjct: 310 SILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGL 369

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G          +  K G   D   +N +++ +CK G+VE  VE+   +    +  D+
Sbjct: 370 SQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDI 429

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  +I      G + +A  +   + + GHKP    Y  +  G  R G   +A    + 
Sbjct: 430 INYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNY 489

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           M+ +G  P+   + M+I     GG+  +A  +   + E
Sbjct: 490 METQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEE 527



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 142/317 (44%), Gaps = 21/317 (6%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           + +I  +   G V +A+ ++ +      +  ++ YN L        L   A +L+  M  
Sbjct: 433 TTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMET 492

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G  PD  T+ +++   C  GK+ +AQ F   + +K     +     +V G   A ++  
Sbjct: 493 QGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEK----CLENYSAMVNGYCEANHVNK 548

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ ++ KQG +L   +F  L+  +C  G+ E  + +  ++  L +   +  Y  +I 
Sbjct: 549 AFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIG 608

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
           A+ +AG +++A  + + LV+ G  P    Y  +I G  R  +  +A+    +MK +G  P
Sbjct: 609 ALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEP 668

Query: 261 NRPVYTMLITMCGR---------------GGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           +   YT+L+  C +                   ++ +    EM +M + P   C+ ++ D
Sbjct: 669 DVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLID 728

Query: 306 GLKNCGKHDLAEKIELL 322
             K+C  +++ + I L 
Sbjct: 729 --KHCKTNNIQDAINLF 743



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 131/298 (43%), Gaps = 21/298 (7%)

Query: 15  VSPQTLS--LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P T++  +IIE     G VD+A   F+       ++C+  Y++++   CE    + A+
Sbjct: 495 VKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLE----EKCLENYSAMVNGYCEANHVNKAF 550

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           AL+ R+ ++G +  K ++  L+   CS G   +A   L+ M     NP +     ++  L
Sbjct: 551 ALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVIGAL 610

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG +E A+ + N ++ +G   D+ T+  +I   C+  +++    +   +   G+  DV
Sbjct: 611 FQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDV 670

Query: 193 STYKILIPAVSKAGMID-----EAFRLLHNLVEDGH----------KPFPSLYAPIIKGM 237
            TY +L+   SK  +       +A +   N+++             KP    Y  +I   
Sbjct: 671 ITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKH 730

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
            +     DA   F+EM  +G  P+   YT L++     G   +A     EM   G+ P
Sbjct: 731 CKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRP 788



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 7/307 (2%)

Query: 21  SLIIEEFGKHGLVD----NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALI 75
           S+++E   K G +D    N  E      A      ++  +  L  +C    +F  A+ ++
Sbjct: 113 SILMEIIKKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVL 172

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
            +    GF P   +   L+N    S K+  A    +++   G NP      + ++G    
Sbjct: 173 LQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRK 232

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L  A  +   M + G   +  ++ + IE +C  G  +   ++   V    +  DV  Y
Sbjct: 233 GNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAY 292

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ++I        + EA  +L  + + G  P   +Y  +I G    G    A     EM  
Sbjct: 293 TVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVS 352

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           KG   N  + + ++    + G   E AN   E  +MG+     C+++V D L   GK  +
Sbjct: 353 KGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGK--V 410

Query: 316 AEKIELL 322
            E +ELL
Sbjct: 411 EEAVELL 417



 Score = 57.8 bits (138), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 15/209 (7%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M   N++ +    S +I    + G ++ A  VFN          V+ Y  ++   C 
Sbjct: 588 LETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCR 647

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVN---------------AWCSSGKMREAQEF 109
           +     A+ ++  M  +G  PD  TY +L+N               A  S   M +    
Sbjct: 648 MNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKENMMDPSAL 707

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
             EM D    P V    +L+        ++ A  + N+MI +G   D  T+ +L+   C 
Sbjct: 708 WSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCN 767

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
            G ++  V ++  +   G+  D  T  +L
Sbjct: 768 VGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796


>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 376

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 3/259 (1%)

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           CE     GA  + + ++     PD   Y  ++N +  +G+M++  E  + M  +G +  V
Sbjct: 1   CESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSV 59

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++++GL +   +E A  +   M K GFV D  T+  L+   CK+G +   + +   
Sbjct: 60  ASFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEI 119

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
             + G   D   Y  +I A+ K   +++A  +L+ ++  G KP   +Y  +IKG+    +
Sbjct: 120 AEQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASK 179

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            DDA   F EM     PPN   Y++LI    +G RF EA + + EM E GL P    + L
Sbjct: 180 RDDAVRIFREMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSL 239

Query: 303 VTDGLKNCGKHDLAEKIEL 321
           +  GL  C  H +   ++L
Sbjct: 240 LMKGL--CLGHKVEMALQL 256



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 110/242 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I    K   ++ AV V N      C+    +YN+L+  L        A  + R M  
Sbjct: 133 SAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIFREMGT 192

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               P+  TY+IL++  C   +  EA + ++EM +KG NP V    LL++GL     +E 
Sbjct: 193 TDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCLGHKVEM 252

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A Q+ N++ K+GF  D++  N LI  +C  G+ +  + +Y  + +     ++ T   L+ 
Sbjct: 253 ALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLME 312

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
              K G +  A  +   ++++  +P    Y   +KG+    +  DA  F  +   K   P
Sbjct: 313 GFYKDGNVRNALVIWARILKNELQPDIISYNITLKGLCSCNRISDAIWFLHDAVRKKIIP 372

Query: 261 NR 262
            +
Sbjct: 373 TK 374



 Score = 84.3 bits (207), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 124/288 (43%), Gaps = 1/288 (0%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           + G +D A  V+            ++YN++L            + L   M R+G      
Sbjct: 2   ESGDIDGAERVYKDIVESKVSPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSVA 60

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
           ++ I++     + K+ EA    + M+  GF        +LV G    GY+  +  ++   
Sbjct: 61  SFNIMMRGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIA 120

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
            ++G VLD   ++++I  +CK  ++E  V +   + + G   +   Y  LI  +  A   
Sbjct: 121 EQKGGVLDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKR 180

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D+A R+   +      P  + Y+ +I G+ +  +F +A+    EM  KG  P+   Y++L
Sbjct: 181 DDAVRIFREMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLL 240

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           +     G +   A     ++T+ G  P  +  +++  GL + GK  LA
Sbjct: 241 MKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLA 288



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 128/303 (42%), Gaps = 7/303 (2%)

Query: 30  HGLVDN-----AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84
            GL DN     A+ ++   T     +  + Y  L+   C+    + +  ++    +KG V
Sbjct: 67  RGLFDNRKVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGV 126

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
            D   Y+ ++NA C   K+ +A   L  M   G  P     + L++GL+ A   + A ++
Sbjct: 127 LDAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRI 186

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204
             +M       ++ T++ LI+ +CK        ++   + + GL   V TY +L+  +  
Sbjct: 187 FREMGTTDCPPNIATYSILIDGLCKGERFGEAYDLVKEMLEKGLNPSVITYSLLMKGLCL 246

Query: 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264
              ++ A +L + + + G KP   ++  +I G+   G+   A   + +M      PN   
Sbjct: 247 GHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVT 306

Query: 265 YTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324
              L+    + G    A      + +  L P    +++   GL +C +  +++ I  L  
Sbjct: 307 QNTLMEGFYKDGNVRNALVIWARILKNELQPDIISYNITLKGLCSCNR--ISDAIWFLHD 364

Query: 325 SLR 327
           ++R
Sbjct: 365 AVR 367


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 143/319 (44%), Gaps = 5/319 (1%)

Query: 9   KPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK 66
           K   L + P  ++   +I    K G +  A E+  +      +  V  + +L+  LC+  
Sbjct: 291 KWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKG 350

Query: 67  LFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
               A+ L  +++R   + P+  TY  +++ +C   K+  A+  L  M ++G  P  +  
Sbjct: 351 WTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTY 410

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G   AG  E A ++++ M K+GF  ++ T+N+ I+++CK G      ++     +
Sbjct: 411 TCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFR 470

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           LGL AD  TY ILI  + +     EA      + + G +P    Y  +I    R+ + ++
Sbjct: 471 LGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEE 530

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           +   F+E    G  P +  YT +I    R      A  +   M++ G TP S  +  +  
Sbjct: 531 SEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALIS 590

Query: 306 GLKNCGKHDLAEKIELLEV 324
           GL  C +  L E  +L E 
Sbjct: 591 GL--CKESKLDEACQLYEA 607



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 136/308 (44%), Gaps = 7/308 (2%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I+   K G  + A  +F K   + + +  V  Y S++   C+    + A  L+ R
Sbjct: 338 THTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSR 397

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G VP+ +TY  L++    +G   +A E +  M  +GF+  +   +  +  L   G 
Sbjct: 398 MKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGR 457

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +++ K  + G   D  T+  LI  +C+  +    +  +  + K G+  D+ TY  
Sbjct: 458 FLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNT 517

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A S+   ++E+ +L    V  G  P    Y  +I G  R      A  FF+ M   G
Sbjct: 518 LIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHG 577

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDL 315
             P+   Y  LI+   +  +  EA      M + GL+P  ++R    +T   + C + D 
Sbjct: 578 CTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTR----LTLAYEYCKQDDS 633

Query: 316 AEKIELLE 323
           A  + +LE
Sbjct: 634 ATAMVILE 641



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 3/313 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+ + L ++ +TL+ +    G+ GLV  A  VF++          + Y  +  A C +  
Sbjct: 187 MENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGR 246

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
                  ++ M+R+GFV D  T  ++++ +C  G       +  +  + G  P +     
Sbjct: 247 ISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTS 306

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL- 186
           L+ GL   G ++ A +M+ +M+K+G+  ++ T  +LI+ +CK G  E    ++  + +  
Sbjct: 307 LINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSD 366

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
               +V TY  +I    K   ++ A  LL  + E G  P    Y  +I G  + G F+ A
Sbjct: 367 DYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKA 426

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           +     M  +G   N   Y   I    + GRF+EA   L +   +GL   +  + ++   
Sbjct: 427 YELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISE 486

Query: 307 LKNCGKHDLAEKI 319
           L  C + D  E +
Sbjct: 487 L--CRRADTREAL 497



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 110/257 (42%), Gaps = 1/257 (0%)

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           E+  F  A  ++  M   G V   RT   +       G +  A+    EM  +G  P   
Sbjct: 173 EIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRVRGVCPDSV 232

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
              L+       G +    + +  M+++GFV+D  T   +I T C+ G        +   
Sbjct: 233 SYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKW 292

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            +LGL  ++  +  LI  + K G I +AF +L  +V+ G KP    +  +I G+ ++G  
Sbjct: 293 VELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALIDGLCKKGWT 352

Query: 244 DDAFCFFSEM-KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
           + AF  F ++ +   + PN   YT +I    +  +   A   L  M E GL P ++ +  
Sbjct: 353 EKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTC 412

Query: 303 VTDGLKNCGKHDLAEKI 319
           + DG    G  + A ++
Sbjct: 413 LIDGHSKAGNFEKAYEL 429



 Score = 60.8 bits (146), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 3/278 (1%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++LM     S +  T +  I+   K G    A ++  K      Q   + Y  L+  
Sbjct: 427 YELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILISE 486

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC       A     +M + G  PD  TY  L+ A+    +M E+++   E    G  P 
Sbjct: 487 LCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEAVGLGLVPT 546

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 ++ G      +  A +  N+M   G   D  T+ +LI  +CK  +++   ++Y 
Sbjct: 547 KETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKLDEACQLYE 606

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++   GL     T   L     K      A  +L  L     K +      +I+ +    
Sbjct: 607 AMVDKGLSPCEVTRLTLAYEYCKQDDSATAMVILERL---DKKLWIRTVNTLIRKLCSER 663

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
           +   A  FF ++  K    +R   T   T C    ++ 
Sbjct: 664 KVGMAVLFFHKLLDKDQNVDRVTLTAFTTACYESNKYA 701



 Score = 57.8 bits (138), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 75/182 (41%)

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           D +V+     G  + A  MV +M   G VL + T N +     + G V +   ++  +  
Sbjct: 165 DCMVRVFAEIGKFQEAVNMVIEMENHGLVLTVRTLNCVTGVAGEMGLVGYAENVFDEMRV 224

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+C D  +YK++  A  + G I +  R L ++V  G     +    +I     +G    
Sbjct: 225 RGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASR 284

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            F +F +    G  PN   +T LI    + G   +A   L EM + G  P       + D
Sbjct: 285 VFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALID 344

Query: 306 GL 307
           GL
Sbjct: 345 GL 346


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T +  +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  T+++L+N  C   KM +A E   EM B G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q  + DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXP 414



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 140/339 (41%), Gaps = 37/339 (10%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        ++  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS------------------------D 115
             G+      + IL++ +C  G++R AQ     ++                        D
Sbjct: 129 ECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLD 188

Query: 116 KGF-----------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           +GF            P V    +L+ GL     ++ A ++ ++M+  G V +  TF +LI
Sbjct: 189 EGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLI 248

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           +  CK+G V+  +E+Y  +    L  D+ TY  LI  + K G + +   L+  +   G K
Sbjct: 249 DGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLK 308

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  +I G  + G  + AF +   M  +    +   YT LI+   + GR V+A   
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKM 368

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
           L EM  +GL P    + ++ +    C K D+    +LL+
Sbjct: 369 LREMLSVGLKPEIGTYTMIINEF--CKKGDVWTGSKLLK 405



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 112/251 (44%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           + L  S  + + ++  + K G +D    + +   A   Q  V  ++ L+  LC+      
Sbjct: 165 WGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDD 224

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +   P +   + L+ 
Sbjct: 225 ANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L+    ++++M  +G   D  T+ +LI+  CK G++E   E    + K  +  
Sbjct: 285 GLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G         
Sbjct: 345 DDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLL 404

Query: 251 SEMKIKGHPPN 261
            EM+  G+ PN
Sbjct: 405 KEMQRXGYXPN 415



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+   CK GE+     ++ S+ K GL   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL   +   G +P    ++ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL--CKKGDLKQXXDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 47.8 bits (112), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 52/116 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +     Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G+ P
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXGYXP 414


>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
          Length = 422

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 139/289 (48%), Gaps = 7/289 (2%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           +K    S++P   S IIE +G+  L D A++ F+    F+ +      N LL  L   + 
Sbjct: 73  LKSEQYSINPSLFSDIIEIYGEANLPDQALKTFHSMLQFHSKPLPKHLNXLLQLLVSHRN 132

Query: 68  F-HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
           +   A+ L +   R G  PD ++Y IL++A+C +G +  A     +M  +   P V    
Sbjct: 133 YIRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYR 192

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           +L+QGL     +  A  ++  M+ +G+V D  ++ +L+ ++C+  +++   E Y  +C++
Sbjct: 193 ILMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLK---EAYKLLCRM 249

Query: 187 ---GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              G   D+  Y  +I    + G   +A ++L ++  +G  P    Y  ++ G+  +G +
Sbjct: 250 KVKGCNPDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLY 309

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           D+A  +  EM  KG  P+  V+  LI      G+  EA   L EM   G
Sbjct: 310 DEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEVLXEMLRHG 358



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 126/297 (42%), Gaps = 1/297 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKH-GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           KT   M  ++    P+ L+ +++    H   +  A ++F     +        YN L+ A
Sbjct: 103 KTFHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSA 162

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       AY L  +M ++   PD  +Y IL+   C   ++  A + L++M +KG+ P 
Sbjct: 163 FCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDMLNKGYVPD 222

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                 L+  L     L+ A +++ +M  +G   D+  +N++I   C+ G      ++  
Sbjct: 223 ALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLE 282

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            +   G   ++ +Y  L+  +   G+ DEA   +  ++  G  P  S++  +I G    G
Sbjct: 283 DMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVG 342

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           + ++A     EM   G   +   +  +I       + V   N   E  ++ +TP +R
Sbjct: 343 KLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENIFDEXLKLEITPNTR 399


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 129/277 (46%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            P    ++++ + + G V   +  F +         V+  N LL  L ++      + + 
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
             M R G  P+  T+ IL +  C  G   +  +FL++M ++GF+P +   + L+      
Sbjct: 292 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 351

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A  +   M ++G V DL ++ +L+  +CK G V    ++++ +   GL  D+ TY
Sbjct: 352 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 411

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G + E+  LLH+++ +G  P       +++G  + G+F  A     E++ 
Sbjct: 412 NTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQR 471

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            G   ++ +Y+ LI    R  R   A N L  M++ G
Sbjct: 472 FGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDG 508



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 126/294 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  E M+ + ++ +  T +++     K G      +   K         ++ YN+L+ +
Sbjct: 288 WEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINS 347

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A+ L + M R+G VPD  +Y  L+N  C  G++REA +    M  +G +P 
Sbjct: 348 YCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPD 407

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L+ G    G ++ ++ +++ MI  G   D  T   L+E   K G+    + +  
Sbjct: 408 IVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVV 467

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+      Y  LI A+ +      A  LL  + +DGHK    +Y  +IK   +  
Sbjct: 468 ELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCD 527

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              +A     EM  K   PN   Y  +J    R  R +E  + + EM   G  P
Sbjct: 528 CIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLP 581



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 104/219 (47%)

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           RRM+R GFVP   T   L+N            E  +EM   G  P +   ++L   L   
Sbjct: 257 RRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKD 316

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G      + + KM ++GF  D+ T+N+LI + C+ G ++    +Y  + + G+  D+ +Y
Sbjct: 317 GDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSY 376

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+  + K G + EA +L H +V  G  P    Y  +I G  + G+  ++     +M  
Sbjct: 377 TALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIW 436

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  P+     +L+   G+ G+F+ A N +VE+   G++
Sbjct: 437 NGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFGVS 475



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 104/227 (45%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   + +LV A+   G++RE     + M   GF P V   + L+ GLL   Y +   ++ 
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            +M + G   +L TFN L   +CK G+     +    + + G   D+ TY  LI +  + 
Sbjct: 292 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 351

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +D+AF L   +   G  P    Y  ++ G+ + G+  +A   F  M  +G  P+   Y
Sbjct: 352 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 411

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             LI    + G+  E+ + L +M   G++P S    ++ +G    GK
Sbjct: 412 NTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGK 458



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 23/252 (9%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEM---------------------SDKGFNP 120
           G  P  + Y I+V+    S    +A +FL E+                      D  ++P
Sbjct: 174 GLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELVKDDLPGEDVFKNLILCTEDCNWDP 233

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            V   D+LV+  L  G +    +   +M++ GFV  + T N L+  + K    + C E+Y
Sbjct: 234 VVF--DMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVY 291

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + + G+  ++ T+ IL   + K G   +  + L  + E+G  P    Y  +I    R+
Sbjct: 292 EEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRK 351

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ DDAF  +  M  +G  P+   YT L+    + GR  EA      M   GL+P    +
Sbjct: 352 GRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTY 411

Query: 301 DLVTDGLKNCGK 312
           + +  G    GK
Sbjct: 412 NTLIHGYCKEGK 423



 Score = 54.3 bits (129), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 70/158 (44%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +YN L+ + C+      A  L   M+ K   P+  TY  ++       +  E +  + EM
Sbjct: 515 IYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEM 574

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P +     L  G      ++ A+ +++   K+  + D E+FN+LI      G++
Sbjct: 575 VASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKGDI 634

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211
              +E+   + K+GL  +  T K +I  + KA  +D A
Sbjct: 635 ARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSA 672


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G    A+E+ +   +      V  YN L+  LC        Y L+R M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++   P++ TY  L+N + + GK+  A + L EM   G +P     + L+ G ++ G  
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M   M  +G      ++  L++ +CK+ E +     Y  + + G+C    TY  +
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +DEA  LL+ + +DG  P    Y+ +I G  + G+F  A      +   G 
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y+ LI  C R G   EA      M   G T     F+++   L   GK   AE+
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 1/295 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G    A E+  +          ++Y++L++  C +     A  +   M
Sbjct: 440 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAM 499

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G   D  T+ +LV + C +GK+ EA+EF++ M+  G  P     D L+ G  N+G  
Sbjct: 500 ILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M K G      T+ SL++ +CK G +    +   S+  +    D   Y  L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K+G + +A  L   +V+    P    Y  +I G+ R+G+   A  F  E + +G+
Sbjct: 620 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN+ +YT  +    + G++     +  +M  +G TP     + + DG    GK
Sbjct: 680 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 734



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 3/323 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + LS +  T + +I+     G    A+++F    A       + Y  LL  LC+   
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 383

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A     RM R G    + TY  +++  C +G + EA   L EMS  G +P +     
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G  ++AK++V ++ + G   +   +++LI   C+ G ++  + +Y ++   G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T+ +L+ ++ KAG + EA   +  +  DG  P    +  +I G    G+   AF
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 563

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM   GH P    Y  L+    +GG   EA  +L  +  +     +  ++ +   +
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623

Query: 308 KNCGKHDLAEKIELL-EVSLRSV 329
             C   +LA+ + L  E+  RS+
Sbjct: 624 --CKSGNLAKAVSLFGEMVQRSI 644



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 144/317 (45%), Gaps = 3/317 (0%)

Query: 7   LMKPYNL-SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           LM  Y L + +P    ++I  + + G++ +++E+F     +     V   N++L ++ + 
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKS 171

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 ++ ++ M+++   PD  T+ IL+N  C+ G   ++   +Q+M   G+ P +   
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++      G  ++A ++++ M  +G   D+ T+N LI  +C+S  +     +   + K
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 291

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  +  TY  LI   S  G +  A +LL+ ++  G  P    +  +I G    G F +
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  M+ KG  P+   Y +L+    +   F  A  + + M   G+      +  + D
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 306 GLKNCGKHDLAEKIELL 322
           GL  C    L E + LL
Sbjct: 412 GL--CKNGFLDEAVVLL 426



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++  LC+      A  L+  M + G  PD  TY+ L+N +C  G+ + A+E +  
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           +   G +P       L+      G L+ A ++   MI +G   D  TFN L+ ++CK+G+
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V    E    +   G+  +  ++  LI     +G   +AF +   + + GH P    Y  
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG+ + G   +A  F   +       +  +Y  L+T   + G   +A +   EM +  
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           + P S  +  +  GL   GK  +A
Sbjct: 644 ILPDSYTYTSLISGLCRKGKTVIA 667



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +N L+  LC    F  +  L+++M + G+ P   TY  +++ +C  G+ + A E L 
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG +  V   ++L+  L  +  +     ++  M K+    +  T+N+LI      G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V    ++   +   GL  +  T+  LI      G   EA ++ + +   G  P    Y 
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ +  +FD A  F+  MK  G    R  YT +I    + G   EA   L EM++ 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + +G    G+   A++I
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEI 460



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 36/296 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------R 104
            ++YN+LL A+C+      A +L   M+++  +PD  TY  L++  C  GK        +
Sbjct: 613 TVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAK 672

Query: 105 EAQE-----------------------------FLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           EA+                              F ++M + G  P +   + ++ G    
Sbjct: 673 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 732

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +E    ++ +M  Q    +L T+N L+    K  +V     +Y S+   G+  D  T 
Sbjct: 733 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+  + ++ M++   ++L   +  G +     +  +I      G+ + AF     M  
Sbjct: 793 HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            G   ++     ++++  R  RF E+   L EM++ G++P SR +  + +GL   G
Sbjct: 853 LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVG 908



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            + V   T +++I +   +G ++ A ++    T+          ++++  L     F  + 
Sbjct: 820  VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 879

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             ++  M ++G  P+ R Y  L+N  C  G ++ A    +EM      PP      +V+ L
Sbjct: 880  MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G  + A  ++  M+K   V  + +F +L+   CK+G V   +E+   +   GL  D+
Sbjct: 940  AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +Y +LI  +   G +  AF L   +  DG     + Y  +I+G+  R
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLAR 1047



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 8/316 (2%)

Query: 12   NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            NL  +P   T + +I+ + + G ++   ++  +    N    +  YN LL    + K   
Sbjct: 712  NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             ++ L R +I  G +PDK T   LV   C S  +    + L+    +G        ++L+
Sbjct: 772  TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 831

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                  G +  A  +V  M   G  LD +T ++++  + ++   +    + + + K G+ 
Sbjct: 832  SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAF 247
             +   Y  LI  + + G I  AF +   ++   HK  P   A   +++ + + G+ D+A 
Sbjct: 892  PESRKYIGLINGLCRVGDIKTAFVVKEEMI--AHKICPPNVAESAMVRALAKCGKADEAT 949

Query: 248  CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                 M      P    +T L+ +C + G  +EA    V M+  GL      ++++  GL
Sbjct: 950  LLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009

Query: 308  KNCGKHDLAEKIELLE 323
              C K D+A   EL E
Sbjct: 1010 --CAKGDMALAFELYE 1023



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NP V   D+L++  L  G ++ + ++   M   GF   + T N+++ ++ KSGE      
Sbjct: 122 NPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
               + K  +C DV+T+ ILI  +   G  +++  L+  + + G+ P    Y  ++    
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++G+F  A      MK KG   +   Y MLI    R  R  +    L +M +  + P   
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299

Query: 299 CFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            ++ + +G  N GK  +A ++  E+L   L
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGL 329


>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 486

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 5/323 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  + +M+   + V+ +T  +I+ ++ +    D AV  FN    +     +  +NSLL 
Sbjct: 122 MWDVVAIMRREGV-VNVETFGIIMRKYARAQKFDEAVYTFNIMEKYGVVPNLAAFNSLLG 180

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ K    A  +  +M  + F PD +TY+IL+  W  +  + + +E   EM D G  P
Sbjct: 181 ALCKSKNVRKAQEIFDKMNGR-FNPDAKTYSILLEGWGKAPNLPKMREVYSEMLDAGCQP 239

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++V  L   G +E A  +V  M  +G       ++ L+ T      +E  V  +
Sbjct: 240 DIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATF 299

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  DV  Y  L+ A  K    + AFR++ ++   G  P    +  I+  +   
Sbjct: 300 LDMEKDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISL 359

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A+  F  M IK   P+   YTM+I M         A      M      P    F
Sbjct: 360 GKDDEAYRVFRRM-IKRCQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTF 418

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ +GL  C K ++++   LLE
Sbjct: 419 SVLINGL--CDKGEVSQACVLLE 439



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 1/242 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K G V+ AV V    ++  CQ    +Y+ L+           A A    M
Sbjct: 243 TYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDM 302

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G VPD   Y  LV A+C   K   A   + +M   G  P  R  ++++  L++ G  
Sbjct: 303 EKDGIVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILNKLISLGKD 362

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++  +MIK+    D +T+  +I+  C++  VE  ++++  +        + T+ +L
Sbjct: 363 DEAYRVFRRMIKR-CQPDSDTYTMMIKMFCENDNVEMALKVWKYMRLKQFLPSMHTFSVL 421

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + +A  LL +++E G +P  S +  + + + + G+ D       +MKI   
Sbjct: 422 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLEFLVDKMKILIQ 481

Query: 259 PP 260
            P
Sbjct: 482 EP 483



 Score = 58.5 bits (140), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+ + ++ + +T ++I+ +    G  D A  VF +     CQ     Y  ++  
Sbjct: 331 FRVMDDMEGHGIAPNSRTWNIILNKLISLGKDDEAYRVFRRMIK-RCQPDSDTYTMMIKM 389

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  + + M  K F+P   T+++L+N  C  G++ +A   L++M +KG  PP
Sbjct: 390 FCENDNVEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPP 449

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L Q LL  G  +  + +V+KM
Sbjct: 450 GSTFGKLRQLLLKEGRKDVLEFLVDKM 476


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G    A+E+ +   +      V  YN L+  LC        Y L+R M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++   P++ TY  L+N + + GK+  A + L EM   G +P     + L+ G ++ G  
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M   M  +G      ++  L++ +CK+ E +     Y  + + G+C    TY  +
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +DEA  LL+ + +DG  P    Y+ +I G  + G+F  A      +   G 
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y+ LI  C R G   EA      M   G T     F+++   L   GK   AE+
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 1/295 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G    A E+  +          ++Y++L++  C +     A  +   M
Sbjct: 440 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAM 499

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G   D  T+ +LV + C +GK+ EA+EF++ M+  G  P     D L+ G  N+G  
Sbjct: 500 ILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 559

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M K G      T+ SL++ +CK G +    +   S+  +    D   Y  L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K+G + +A  L   +V+    P    Y  +I G+ R+G+   A  F  E + +G+
Sbjct: 620 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN+ +YT  +    + G++     +  +M  +G TP     + + DG    GK
Sbjct: 680 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 734



 Score =  106 bits (265), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 3/323 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + LS +  T + +I+     G    A+++F    A       + Y  LL  LC+   
Sbjct: 324 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 383

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A     RM R G    + TY  +++  C +G + EA   L EMS  G +P +     
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 443

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G  ++AK++V ++ + G   +   +++LI   C+ G ++  + +Y ++   G
Sbjct: 444 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 503

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T+ +L+ ++ KAG + EA   +  +  DG  P    +  +I G    G+   AF
Sbjct: 504 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 563

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM   GH P    Y  L+    +GG   EA  +L  +  +     +  ++ +   +
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 623

Query: 308 KNCGKHDLAEKIELL-EVSLRSV 329
             C   +LA+ + L  E+  RS+
Sbjct: 624 --CKSGNLAKAVSLFGEMVQRSI 644



 Score =  105 bits (262), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 144/318 (45%), Gaps = 3/318 (0%)

Query: 7   LMKPYNL-SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           LM  Y L + +P    ++I  + + G++ +++E+F     +     V   N++L ++ + 
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKS 171

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 ++ ++ M+++   PD  T+ IL+N  C+ G   ++   +Q+M   G+ P +   
Sbjct: 172 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 231

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++      G  ++A ++++ M  +G   D+ T+N LI  +C+S  +     +   + K
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 291

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  +  TY  LI   S  G +  A +LL+ ++  G  P    +  +I G    G F +
Sbjct: 292 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  M+ KG  P+   Y +L+    +   F  A  + + M   G+      +  + D
Sbjct: 352 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 306 GLKNCGKHDLAEKIELLE 323
           GL  C    L E + LL 
Sbjct: 412 GL--CKNGFLDEAVVLLN 427



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++  LC+      A  L+  M + G  PD  TY+ L+N +C  G+ + A+E +  
Sbjct: 404 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 463

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           +   G +P       L+      G L+ A ++   MI +G   D  TFN L+ ++CK+G+
Sbjct: 464 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V    E    +   G+  +  ++  LI     +G   +AF +   + + GH P    Y  
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG+ + G   +A  F   +       +  +Y  L+T   + G   +A +   EM +  
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 643

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           + P S  +  +  GL   GK  +A
Sbjct: 644 ILPDSYTYTSLISGLCRKGKTVIA 667



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +N L+  LC    F  +  L+++M + G+ P   TY  +++ +C  G+ + A E L 
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG +  V   ++L+  L  +  +     ++  M K+    +  T+N+LI      G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V    ++   +   GL  +  T+  LI      G   EA ++ + +   G  P    Y 
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ +  +FD A  F+  MK  G    R  YT +I    + G   EA   L EM++ 
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 432

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + +G    G+   A++I
Sbjct: 433 GIDPDIVTYSALINGFCKVGRFKTAKEI 460



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 36/296 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------R 104
            ++YN+LL A+C+      A +L   M+++  +PD  TY  L++  C  GK        +
Sbjct: 613 TVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAK 672

Query: 105 EAQE-----------------------------FLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           EA+                              F ++M + G  P +   + ++ G    
Sbjct: 673 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 732

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +E    ++ +M  Q    +L T+N L+    K  +V     +Y S+   G+  D  T 
Sbjct: 733 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 792

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+  + ++ M++   ++L   +  G +     +  +I      G+ + AF     M  
Sbjct: 793 HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 852

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            G   ++     ++++  R  RF E+   L EM++ G++P SR +  + +GL   G
Sbjct: 853 LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVG 908



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 1/246 (0%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            + V   T +++I +   +G ++ A ++    T+          ++++  L     F  + 
Sbjct: 820  VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 879

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             ++  M ++G  P+ R Y  L+N  C  G ++ A    +EM      PP      +V+ L
Sbjct: 880  MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G  + A  ++  M+K   V  + +F +L+   CK+G V   +E+   +   GL  D+
Sbjct: 940  AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 999

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF-RRGQFDDAFCFFS 251
             +Y +LI  +   G +  AF L   +  DG     + Y  +I+G+  R   F  A     
Sbjct: 1000 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1059

Query: 252  EMKIKG 257
            ++  +G
Sbjct: 1060 DLLARG 1065



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 8/316 (2%)

Query: 12   NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            NL  +P   T + +I+ + + G ++   ++  +    N    +  YN LL    + K   
Sbjct: 712  NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 771

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             ++ L R +I  G +PDK T   LV   C S  +    + L+    +G        ++L+
Sbjct: 772  TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 831

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                  G +  A  +V  M   G  LD +T ++++  + ++   +    + + + K G+ 
Sbjct: 832  SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 891

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAF 247
             +   Y  LI  + + G I  AF +   ++   HK  P   A   +++ + + G+ D+A 
Sbjct: 892  PESRKYIGLINGLCRVGDIKTAFVVKEEMI--AHKICPPNVAESAMVRALAKCGKADEAT 949

Query: 248  CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                 M      P    +T L+ +C + G  +EA    V M+  GL      ++++  GL
Sbjct: 950  LLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1009

Query: 308  KNCGKHDLAEKIELLE 323
              C K D+A   EL E
Sbjct: 1010 --CAKGDMALAFELYE 1023



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NP V   D+L++  L  G ++ + ++   M   GF   + T N+++ ++ KSGE      
Sbjct: 122 NPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 179

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
               + K  +C DV+T+ ILI  +   G  +++  L+  + + G+ P    Y  ++    
Sbjct: 180 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 239

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++G+F  A      MK KG   +   Y MLI    R  R  +    L +M +  + P   
Sbjct: 240 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 299

Query: 299 CFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            ++ + +G  N GK  +A ++  E+L   L
Sbjct: 300 TYNTLINGFSNEGKVLIASQLLNEMLSFGL 329


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 136/300 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G    A+E+ +          V  YN L+  LC        Y L+R M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDM 289

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++   P++ TY  L+N + + GK+  A++ L EM   G +P     + L+ G ++ G  
Sbjct: 290 RKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNF 349

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M + M  +G +    ++  L++ +CK+ E +     Y  + + G+C    TY  +
Sbjct: 350 KEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 409

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +DEA  +L+ + +DG  P    Y+ +I G  R G+   A      +   G 
Sbjct: 410 IDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGL 469

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y+ LI  C R G   E       M   G TP    F+++   L   GK   AE+
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEE 529



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 141/302 (46%), Gaps = 5/302 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F + G +  A E+  +          ++Y++L++  C +        +   M
Sbjct: 440 TYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAM 499

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  PD  T+ +LV + C +GK+ EA+EF++ M+  G  P     D L+ G  ++G  
Sbjct: 500 ILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEG 559

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M K G      T+ SL++ +CK G +    +   S+  +    D      L
Sbjct: 560 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTL 619

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ K+G +D+A  L   +V+    P    Y  +I G+ R+G+   A  F  E + +G+
Sbjct: 620 ITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 259 -PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK----H 313
             PN+ +YT  +    + G++     +  +M ++GLT      + + DG    GK    H
Sbjct: 680 LVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTH 739

Query: 314 DL 315
           DL
Sbjct: 740 DL 741



 Score =  107 bits (267), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 127/278 (45%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + LS +  T + +I+     G    A+++F+   A       + Y  LL  LC+   
Sbjct: 324 MLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAE 383

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A     RM R G    + TY  +++  C +G + EA   L EMS  G +P +     
Sbjct: 384 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSA 443

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L++AK++V ++ + G   +   +++LI   C+ G ++  + +Y ++   G
Sbjct: 444 LINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEG 503

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T+ +L+ ++ KAG + EA   +  +  DG  P    +  +I G    G+   AF
Sbjct: 504 NTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAF 563

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
             F EM   GH P    Y  L+    +GG  + A  +L
Sbjct: 564 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFL 601



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 148/349 (42%), Gaps = 36/349 (10%)

Query: 7   LMKPYNL-SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           LM  Y L + +P    ++I  + + G++ +++E+F     +     V   N++L ++ + 
Sbjct: 112 LMATYRLCNSNPSVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKS 171

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 ++ ++ M+++   PD  T+ IL+N  C+ G  +++   +Q+M   G+ P +   
Sbjct: 172 CEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTY 231

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS--------------- 170
           + ++      G  ++A ++++ M  +G   D+ T+N LI  +C+S               
Sbjct: 232 NTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRK 291

Query: 171 --------------------GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
                               G+V    ++   +   GL  +  T+  LI      G   E
Sbjct: 292 RMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A ++ H +   G       Y  ++ G+ +  +FD A  F+  MK  G    R  YT +I 
Sbjct: 352 ALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + G   EA   L EM++ G+ P    +  + +G    G+   A++I
Sbjct: 412 GLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEI 460



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 131/300 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  F   G V  A ++ N+   F      + +N+L+        F  A  +   M
Sbjct: 300 TYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMM 359

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG +  + +Y +L++  C + +   A+ F   M   G          ++ GL   G+L
Sbjct: 360 EAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFL 419

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  M+N+M K G   D+ T+++LI   C+ G ++   E+   + ++GL  +   Y  L
Sbjct: 420 DEAVVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTL 479

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G + E  R+   ++ +G+ P    +  ++  + + G+  +A  F   M   G 
Sbjct: 480 IYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGI 539

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN   +  LI   G  G  ++A +   EMT++G  P    +  +  GL   G    AEK
Sbjct: 540 LPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEK 599



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 102/229 (44%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            + V   T +++I +   +G ++ A ++ N  T+          ++++  L     F  + 
Sbjct: 820  VEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESR 879

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             ++  M ++G  P+ R Y  L+N  C  G ++ A    +EM      PP      +V+ L
Sbjct: 880  MVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 939

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G  + A  ++  M+K   V  + +F +L+   CK+G V   +E+   +   GL  D+
Sbjct: 940  AKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDL 999

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
             +Y +LI  +   G +  AF L   +  DG     + Y  ++ G+  +G
Sbjct: 1000 VSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQG 1048



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 117/292 (40%), Gaps = 36/292 (12%)

Query: 56  NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115
           N+L+ A+C+      A +L   M+++  +PD  TY  L++  C  GK   A  F +E   
Sbjct: 617 NTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEA 676

Query: 116 KG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +G   P        V G+  AG  ++      +M K G   D+ T N++I+   + G++E
Sbjct: 677 RGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIE 736

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++ + +       +++TY IL+   SK   +  +F L  +++  G  P       II
Sbjct: 737 KTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSII 796

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC---------------------- 272
            G+      +           +G   +R  + MLI+ C                      
Sbjct: 797 LGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGIS 856

Query: 273 -------------GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
                         R  RF E+   L EM++ G++P SR +  + +GL   G
Sbjct: 857 LDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVG 908



 Score = 73.9 bits (180), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 124/315 (39%), Gaps = 39/315 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M    L+    T + +I+ + + G ++   ++  +    N    +  YN LL    + K 
Sbjct: 710 MDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKH 769

Query: 68  FHGAYALIRRMIRKGFVPDKRT-YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126
              ++ L R MI  G +PDK T Y+I++                                
Sbjct: 770 VSTSFMLYRSMILSGILPDKLTCYSIIL-------------------------------- 797

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
               G+  +  LE   +++   I +G  +D  TFN LI   C +GE+ +  +M   +  L
Sbjct: 798 ----GICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSL 853

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+  D +T   ++  +++     E+  +LH + + G  P    Y  ++ G+ R G    A
Sbjct: 854 GISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTA 913

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           F    EM      P     + ++    + G+  EA+  L  M +M L P    F  +   
Sbjct: 914 FVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHL 973

Query: 307 LKNCGKHDLAEKIEL 321
              C   ++ E +EL
Sbjct: 974 F--CKNGNVTEALEL 986



 Score = 42.4 bits (98), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 2/146 (1%)

Query: 21   SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
            S ++    K G  D A  +            +  + +L+   C+      A  L   M  
Sbjct: 933  SAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSN 992

Query: 81   KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
             G   D  +Y +L+   C+ G M  A E  +EM   GF   V     LV G+L+ G   S
Sbjct: 993  CGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQGTEFS 1052

Query: 141  AKQMVNK-MIKQGFVLDLETFNSLIE 165
               ++ K ++ +GF+  + +FN +I 
Sbjct: 1053 GTDIILKDLLARGFITAM-SFNHMIN 1077


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 125/276 (45%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            ++++  F K G +  A  VF+  T ++ +  V+ +N+L+    ++      + L   M 
Sbjct: 139 FNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQ 198

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G  PD  TY++L+N  C   KM +A E   EM D G  P       L+ G    G ++
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            A ++  +M+ Q    DL T+N+LI  +CK G+++   ++   +   GL  D  TY  LI
Sbjct: 259 LAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G ++ AF     ++++  +     Y  +I G+ + G+  DA     EM   G  
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           P    YTM+I    + G     +  L EM   G  P
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMP 414



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 117/256 (45%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           + +  ++L  S  + + ++  + K G +D    + N   A   Q  V  Y+ L+  LC+ 
Sbjct: 160 DAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  L   M+  G VP+  T+  L++  C +G++  A E  ++M  +  +P +   
Sbjct: 220 SKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITY 279

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + L+ GL   G L+ A+ ++++M  +G   D  T+ +LI+  CK G++E   E    + K
Sbjct: 280 NTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIK 339

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  D   Y  LI  + + G   +A ++L  ++  G KP    Y  II    ++G    
Sbjct: 340 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWT 399

Query: 246 AFCFFSEMKIKGHPPN 261
                 EM+  G  P+
Sbjct: 400 GSKLLKEMQRDGCMPS 415



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 131/310 (42%), Gaps = 2/310 (0%)

Query: 20  LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79
            S +I  + + G + +A+E +        +        +L  L ++K F   +      +
Sbjct: 69  FSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESL 128

Query: 80  RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
             G+      + IL++++   G++R AQ     ++     P V   + L+ G +  G L+
Sbjct: 129 ECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLD 188

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
              ++ N M   G   D+ T++ LI  +CK  +++   E++  +   GL  +  T+  LI
Sbjct: 189 EGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLI 248

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G +D A  +   ++     P    Y  +I G+ ++G    A     EM +KG  
Sbjct: 249 DGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLK 308

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           P++  YT LI    + G    A  Y   M +  +      +  +  GL   G+   AEK+
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368

Query: 320 --ELLEVSLR 327
             E+L V L+
Sbjct: 369 LREMLSVGLK 378



 Score = 84.3 bits (207), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 113/245 (46%), Gaps = 3/245 (1%)

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           D   ++ L+ A+  SG +R+A E  +   +  F  P      +++ L+   Y +      
Sbjct: 65  DIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFY 124

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
            + ++ G+   L  FN L+ +  K GE+     ++ ++ K  L   V ++  L+    K 
Sbjct: 125 EESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL 184

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G +DE FRL + +   G +P    Y+ +I G+ +  + DDA   F EM   G  PN   +
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTF 244

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL-EV 324
           T LI    + GR   A     +M    L+P    ++ +  GL  C K DL +  +L+ E+
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL--CKKGDLKQAQDLIDEM 302

Query: 325 SLRSV 329
           S++ +
Sbjct: 303 SMKGL 307



 Score = 47.4 bits (111), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 53/118 (44%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M    L     T + +I+   K G ++ A E   +    N +   + Y +L+  LC+
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQ 358

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                 A  ++R M+  G  P+  TY +++N +C  G +    + L+EM   G  P V
Sbjct: 359 EGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSV 416


>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
          Length = 521

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 143/334 (42%), Gaps = 19/334 (5%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           + + +E+M+   +  +  T +++++       +     +FN+  A N    V LY +++ 
Sbjct: 185 VQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVIN 244

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A C       A  ++   +  G  P++RTY +L+  +C  G+M  A+  L +M  +G   
Sbjct: 245 AYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGL 304

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL----------------- 163
                + ++ G    G ++ A ++   M K G  L++ T+N+L                 
Sbjct: 305 NQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYT 364

Query: 164 --IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221
             I   CK G++     ++  + + G    V TY ++I   +K G I EA R    + + 
Sbjct: 365 TLISIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKK 424

Query: 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           G  P    YA ++ G    G+ D A   F EMK +G  PN   YT LI+   + GR   A
Sbjct: 425 GFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAA 484

Query: 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
                +M + GL P    +  +   L    + D+
Sbjct: 485 FQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDV 518



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 142/357 (39%), Gaps = 54/357 (15%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF------------- 60
           SVSP   S++++   K G VD+A  + +           L YNSLL              
Sbjct: 128 SVSPFAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQE 187

Query: 61  ----------------------ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98
                                 +L   +      AL   M     V D   Y  ++NA+C
Sbjct: 188 ILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYC 247

Query: 99  SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
            +G MR A + L E    G  P  R   +L++G    G +E+A+ ++  M  QG  L+  
Sbjct: 248 RAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQI 307

Query: 159 TFNSLIETICKSGEVEFCVEMYYS-------------------VCKLGLCADVSTYKILI 199
            FN++I+  C+ G V+  +++  +                   +C++G+  +  TY  LI
Sbjct: 308 IFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLI 367

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
               K G + EA RL   + E G  P    Y+ +I G  ++G+  +A  F  EM+ KG  
Sbjct: 368 SIHCKDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFV 427

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
           P+   Y  L+      G+   A     EM + G  P    +  +  GL   G+ + A
Sbjct: 428 PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAA 484



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 133/326 (40%), Gaps = 22/326 (6%)

Query: 14  SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS--LLFALCEVKLFHGA 71
           S+ P++L+  +    + G + +A  +  +    +C   V  + +  ++  LC+      A
Sbjct: 92  SLDPRSLTFSLLSLRRAGRLADAAGLLERALG-SCPGSVSPFAASVVVDGLCKSGRVDDA 150

Query: 72  YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
             L+  M R G   +   Y  L++ +         QE L+ M ++G    V    +LV  
Sbjct: 151 RRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEATVGTYTILVDS 210

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L  A  +   + + N+M     V D+  + ++I   C++G +    ++       G+  +
Sbjct: 211 LSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPN 270

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY +LI    K G ++ A  LL ++   G      ++  +I G  R+G  DDA    +
Sbjct: 271 ERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKA 330

Query: 252 EM-KIK------------------GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            M KI                   G  PN   YT LI++  + G  VEA     EM E G
Sbjct: 331 AMEKIGVELNIYTYNTLACGLCRMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKG 390

Query: 293 LTPISRCFDLVTDGLKNCGKHDLAEK 318
            TP    + ++  G    G+   AE+
Sbjct: 391 ATPSVLTYSVMIHGYAKKGRIREAER 416



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%)

Query: 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186
           ++V GL  +G ++ A+++++ M + G  L+   +NSL++   +  +     E+   +   
Sbjct: 136 VVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENE 195

Query: 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246
           G+ A V TY IL+ ++S A  I +   L + +  +       LY  +I    R G    A
Sbjct: 196 GIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRA 255

Query: 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
                E    G  PN   Y +LI    + G+   A   L +M   G+      F+ + DG
Sbjct: 256 AKVLDECVGNGVEPNERTYGVLIKGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDG 315

Query: 307 LKNCGKHDLAEKIE 320
               G  D A KI+
Sbjct: 316 YCRKGMVDDALKIK 329


>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
 gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
 gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
          Length = 489

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 145/323 (44%), Gaps = 5/323 (1%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  + +M+   ++ + +T  +I+ ++ +   +D AV  FN    +     +  +NSLL 
Sbjct: 125 MWDVVAIMRKEGVA-NVETFGIIMRKYARAQKLDEAVYTFNVMEKYGVAHNLAAFNSLLS 183

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           ALC+ K    A  +  +M  + F PD +TY+IL+  W  +  + + +E   +M   G  P
Sbjct: 184 ALCKSKNVRKAQEIFDKMNNR-FSPDAKTYSILLEGWGRAPSLPKMREVYSDMLAAGCQP 242

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +    ++V  L   G +E A  +V  M  +G       ++ L+ T      +E  V  +
Sbjct: 243 DIVTYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAF 302

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G+  DV  Y  LI A  K    + AFR++ ++   G  P    +  I+  +   
Sbjct: 303 LDMEKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISL 362

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
           G+ D+A+  F  M IK   P+   YTM+I M     +   A      M      P    F
Sbjct: 363 GKDDEAYRVFRSM-IKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTF 421

Query: 301 DLVTDGLKNCGKHDLAEKIELLE 323
            ++ +GL  C K ++++   LLE
Sbjct: 422 SVLINGL--CDKGEVSQACVLLE 442



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 112/242 (46%), Gaps = 1/242 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++++   K G V+ AV V    ++  CQ    +Y+ L+           A A    M
Sbjct: 246 TYGIMVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDM 305

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            + G +PD   Y  L+ A+C   K   A   + +M   G +P  R  ++++  L++ G  
Sbjct: 306 EKDGIMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILNTLISLGKD 365

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A ++   MIK+    D +T+  +I+  C++ ++E  ++++  +        + T+ +L
Sbjct: 366 DEAYRVFRSMIKRC-KPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMHTFSVL 424

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +   G + +A  LL +++E G +P  S +  + + + + G+ D       +MKI   
Sbjct: 425 INGLCDKGEVSQACVLLEDMIEKGIRPPGSTFGKLRQLLLKEGRKDVLDFLVEKMKILAQ 484

Query: 259 PP 260
            P
Sbjct: 485 EP 486



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ ++ M+ + +S + +T ++I+      G  D A  VF       C+     Y  ++  
Sbjct: 334 FRVMDDMQGHGISPNSRTWNIILNTLISLGKDDEAYRVFRSMIK-RCKPDSDTYTMMIKM 392

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            CE      A  + + M  K F+P   T+++L+N  C  G++ +A   L++M +KG  PP
Sbjct: 393 FCENDKIEMALKVWKYMRLKQFLPSMHTFSVLINGLCDKGEVSQACVLLEDMIEKGIRPP 452

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKM 148
                 L Q LL  G  +    +V KM
Sbjct: 453 GSTFGKLRQLLLKEGRKDVLDFLVEKM 479


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 5/317 (1%)

Query: 5    IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
            +E MK   +  + +  ++I+    KHG    A+++ +     +C   +  YN L+ ALC+
Sbjct: 1720 LEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCK 1779

Query: 65   VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR----EAQEFLQEMSDKGFNP 120
            V     A  L+  M  +    D  TY  L++  C  G  R     A    +EM DKG  P
Sbjct: 1780 VGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTP 1839

Query: 121  PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  +++  LL     E A+++++ M + G   DL T+N LI    K+G ++  ++++
Sbjct: 1840 TSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLF 1899

Query: 181  YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
              +   G   DV TY  ++    KAG ++EA +L   +   G  P    Y  I     + 
Sbjct: 1900 VEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKA 1959

Query: 241  GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            G+  DA  +  EM+ +G         ++ T+C + G+       L EM E G  P    F
Sbjct: 1960 GRMQDAHAYLVEMRKEGLVDAISYVALISTIC-KLGKGKLGFQLLREMLEKGFKPNLVTF 2018

Query: 301  DLVTDGLKNCGKHDLAE 317
            ++V + L      D A+
Sbjct: 2019 NVVFEALSKESNTDDAK 2035



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 132/289 (45%), Gaps = 4/289 (1%)

Query: 9    KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF 68
            KP +   +  T S I+  + + G    A+ +              LYN +L  LC+    
Sbjct: 1689 KPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKE 1748

Query: 69   HGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128
              A  L+  M      PD  TY IL+NA C  G++ +AQ  ++ M  +     +   + L
Sbjct: 1749 KEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTL 1808

Query: 129  VQGLLNAG----YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + GL   G     +E A ++  +M+ +G      T+  +I+ + +    E   ++   + 
Sbjct: 1809 IHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMH 1868

Query: 185  KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
            + G   D+ TY +LI   +KAGM+D+A  L   +   G  P    Y  I+ G  + G+ +
Sbjct: 1869 ENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVE 1928

Query: 245  DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
            +A   F+EMK +G  PN   YT +   C + GR  +A  YLVEM + GL
Sbjct: 1929 EANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGL 1977



 Score = 90.9 bits (224), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 106/271 (39%), Gaps = 31/271 (11%)

Query: 49   QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108
            Q     Y++++   CE      A AL+  M +     + + Y I++   C  GK +EA +
Sbjct: 1694 QANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALD 1753

Query: 109  FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
             L  M+     P +   ++L+  L   G LE A+ +V  M  +    D+ T+N+LI  +C
Sbjct: 1754 LLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLC 1813

Query: 169  KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
            + G   F VE                                AFRL   +V+ GH P   
Sbjct: 1814 RKGNGRFRVE-------------------------------RAFRLFEEMVDKGHTPTSV 1842

Query: 229  LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
             Y  +I  + R    + A      M   G   +   Y MLI    + G   +A +  VEM
Sbjct: 1843 TYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEM 1902

Query: 289  TEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
               G  P    ++ + DG    GK + A K+
Sbjct: 1903 PTRGCIPDVVTYNSIVDGFCKAGKVEEANKL 1933



 Score = 75.5 bits (184), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 1/172 (0%)

Query: 3    KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
            K ++LM     +    T +++I  F K G++D A+++F +     C   V+ YNS++   
Sbjct: 1862 KVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGF 1921

Query: 63   CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
            C+      A  L   M  +G  P+ RTY  + +A   +G+M++A  +L EM  +G    +
Sbjct: 1922 CKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAI 1981

Query: 123  RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
                 L+  +   G  +   Q++ +M+++GF  +L TFN + E + K    +
Sbjct: 1982 -SYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTD 2032



 Score = 37.4 bits (85), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/68 (25%), Positives = 36/68 (52%)

Query: 55   YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
            Y +L+  +C++      + L+R M+ KGF P+  T+ ++  A        +A+  +QE+ 
Sbjct: 1983 YVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELR 2042

Query: 115  DKGFNPPV 122
             +  +PP+
Sbjct: 2043 QQHSSPPL 2050


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K G V  A ++F+           ++YN+L+    +++    A  L   M
Sbjct: 128 TFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEM 187

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  PD  T+ ILV+     G+  +    L+++S  G  P     D+ V GL  AG L
Sbjct: 188 RKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRL 247

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+++G    +  FNS+I    ++G  +   E Y  +   GL    ST   L
Sbjct: 248 DEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSL 307

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +S  G + EA  L+  ++E G       +  ++   F+RG    A   + EM+ +G 
Sbjct: 308 LMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGI 367

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   ++  I    + G   EA N  +EM   GL P +  ++ +  G   CGK + A K
Sbjct: 368 FPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALK 427

Query: 319 IE 320
           +E
Sbjct: 428 LE 429



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II  F + G +     + +    F+C+     YN ++ A C       A A    M
Sbjct: 58  TFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLM 117

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P   T+  ++NA+C  G + EA++    + + GF+P     + L+ G +    +
Sbjct: 118 IERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREI 177

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M K+G   D  TFN L+    K G  E    +   +  LGL  D S + I 
Sbjct: 178 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDIS 237

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +  AG +DEA   L +++E G  P    +  +I    + G  D AF  +  M   G 
Sbjct: 238 VSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGL 297

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            P+    + L+      GR  EA   + +M E GL+  +  F ++ D
Sbjct: 298 TPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLD 344



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 132/307 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM  ++   +    +++I      G   +A+  FN      C   V+ +N+++ A C+
Sbjct: 79  LHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCK 138

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   +   GF P+   Y  L+N +    ++ +A    +EM  KG  P    
Sbjct: 139 EGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGIT 198

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++LV G    G  E   +++  +   G + D   F+  +  +C +G ++  +E    + 
Sbjct: 199 FNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDML 258

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL   +  +  +I A S+AG+ D+AF     +V  G  P PS  + ++ G+   G+  
Sbjct: 259 EKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQ 318

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M  KG   N   +T+L+    + G  V A +   EM   G+ P    F    
Sbjct: 319 EATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFI 378

Query: 305 DGLKNCG 311
           DGL   G
Sbjct: 379 DGLSKQG 385



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 4/316 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +  S   ++++ +   + G   N  ++F        Q C   ++ ++   C    
Sbjct: 12  MREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGC 71

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            H   +L+  M +    P+   Y I++NA C  G+  +A  +   M ++G NP V   + 
Sbjct: 72  IHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT 131

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++      G +  A+++ + + + GF  +   +N+L+    K  E++    +Y  + K G
Sbjct: 132 VINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKG 191

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  T+ IL+    K G  ++  RLL ++   G  P  SL+   + G+   G+ D+A 
Sbjct: 192 IAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAM 251

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTDG 306
            F  +M  KG  P+   +  +I    + G   +A      M   GLTP  S C  L+  G
Sbjct: 252 EFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLM-G 310

Query: 307 LKNCGKHDLAEKIELL 322
           L   G+  L E  EL+
Sbjct: 311 LSINGR--LQEATELI 324



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 120/293 (40%), Gaps = 2/293 (0%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           LM      +SP  ++   +I  + + GL D A E +     F         +SLL  L  
Sbjct: 254 LMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSI 313

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  LI +MI KG   +   + +L++ +   G +  AQ    EM  +G  P V  
Sbjct: 314 NGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVA 373

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
               + GL   G +E A  +  +M+++G + +   +NSLI   CK G++   +++   + 
Sbjct: 374 FSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMR 433

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  D+ T  ++I  + K G +  A  +  ++ + G  P    Y  +I G  +     
Sbjct: 434 HRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMV 493

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297
           +A    + M   G  P+   Y + I       R   A   L E+   G+   S
Sbjct: 494 NADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFS 546



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 104/223 (46%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           LSV+    ++++++F K G V  A  ++ +         V+ +++ +  L +  L   AY
Sbjct: 332 LSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAY 391

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +   M+RKG +P+   Y  L+  +C  GK+ EA +  + M  +G  P +   ++++ GL
Sbjct: 392 NVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGL 451

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G + SA  +   M + G   D+ T+N+LI   CK+ ++     +   +   G   D+
Sbjct: 452 CKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDL 511

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235
           +TY I I     +  ++ A  +L  LV  G   F     P + 
Sbjct: 512 TTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFACPPTLN 554


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 140/318 (44%), Gaps = 14/318 (4%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
              + I+ F   G + NAV VF           V  +N LL AL +  L   A  +  RM
Sbjct: 257 AFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R  + PD R+Y  L+ AWC++  + EA     EM + G  P V   + +++GLL     
Sbjct: 317 -RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 375

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M   M  +G   ++ T+  LI   CK G+++  +  +  +  +G   DV+TY  L
Sbjct: 376 PEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCL 435

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     A  +D    LL  + + G  P    Y  +IK +  R   DDA   + +M  KG 
Sbjct: 436 LVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL 495

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLV------EMTEMGLTPISRCFDLVTDGLKNCGK 312
            P    Y M++     GGR     NY++      EM   G+ P    + +  +G    G+
Sbjct: 496 EPTIHTYNMMMKSYFLGGR-----NYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGR 550

Query: 313 HDLAEKI--ELLEVSLRS 328
            + A K   E+++  +++
Sbjct: 551 PEEACKYIEEMIQKGMKT 568



 Score = 81.3 bits (199), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 2/270 (0%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
              + Y  ++  L + + F    ALI+ M ++G +     + I + ++ ++G+++ A   
Sbjct: 219 HTTITYCKMVHILGKARQFQSMVALIQEMGKEGALC-MDAFKIAIKSFAAAGEIKNAVGV 277

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            + M   GF+  V   + L+  L   G    A Q+ ++M +  +  DL ++ +L+   C 
Sbjct: 278 FEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM-RDRYAPDLRSYTALMLAWCN 336

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           +  +     ++  + + GL  DV  +  +I  + +     EA ++   +   G  P    
Sbjct: 337 ARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWT 396

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I+   +RG+ D A   F EM+  G  P+   YT L+   G   R       L EMT
Sbjct: 397 YTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMT 456

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + G  P  R ++ +   L N    D A +I
Sbjct: 457 QKGCPPDGRTYNALIKLLTNRNMPDDAARI 486



 Score = 67.8 bits (164), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 104/256 (40%), Gaps = 36/256 (14%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  ELMK    + +  T +++I +  K G +D A+  F +     CQ             
Sbjct: 380 KMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQ------------- 426

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                                 PD  TY  L+  + ++ +M      L+EM+ KG  P  
Sbjct: 427 ----------------------PDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDG 464

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYY 181
           R  + L++ L N    + A ++  KMIK+G    + T+N ++++    G        ++ 
Sbjct: 465 RTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWE 524

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+C DV++Y + I    + G  +EA + +  +++ G K     Y        + G
Sbjct: 525 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTPQIDYNKFAADFSKAG 584

Query: 242 QFDDAFCFFSEMKIKG 257
           + D  +    ++K  G
Sbjct: 585 KPDILYELAQKVKFTG 600


>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 549

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 150/367 (40%), Gaps = 42/367 (11%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW  I  M      VS  T++ ++          +A++ FNK   F   +     N LL 
Sbjct: 179 MWGLISQMDEIGGLVSLATMTKVMRRLAGASRWTDAIDAFNKMDQFGVVKDTTAMNVLLD 238

Query: 61  ALCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
            LC+   VK   GA+    + +R    PD+ ++  LV+ WC +  M EA++ ++EM + G
Sbjct: 239 TLCKERSVKRARGAF----QELRGSVPPDESSFNTLVHGWCKARMMNEARDMMKEMEEHG 294

Query: 118 FNPPV--------------------------RGR---------DLLVQGLLNAGYLESAK 142
           F P V                          R +          +++  L  AG  + A 
Sbjct: 295 FKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGRTQEAL 354

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            + +K+   G   D   +NSLI  + ++G +E    +   +   G+   V+T+  LI A 
Sbjct: 355 DIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISAA 414

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
                 + A ++L  + E   KP    Y P++K   +R            M  K   P+ 
Sbjct: 415 CDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLCCKRQWIKVLRFLICHMFRKDITPDF 474

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             YT+L+T   R G+  ++  +L EM   G  P    FDLV + L     H   +KI+LL
Sbjct: 475 STYTLLVTWLCRNGKPAQSCLFLEEMVLKGFAPKKETFDLVAEKLDKANLHSAKKKIQLL 534

Query: 323 EVSLRSV 329
            +   +V
Sbjct: 535 TLQAAAV 541


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 157/349 (44%), Gaps = 38/349 (10%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + ++ M  Y  +      S +I  F + G VD A+++ N      C+   + YN+ L  L
Sbjct: 63  QLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLN---TMLCKPNTVCYNAALKGL 119

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C  + +     L+  M+RKG  P++ T+++L+++ C +  +  A E L++M   G  P  
Sbjct: 120 CIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDT 179

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKM----------------------------IKQGFV 154
              ++++  L   G ++ A +++N M                            I Q F 
Sbjct: 180 VNYNIIINSLSERGRVDDALRLLNSMVCKPDALGFNAVLKGFCRAERWHDASELIAQMFR 239

Query: 155 LDLE----TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
            D      TFN LI+ +C++G V +  +++  + +     D+ TY  L+   S+ G+++ 
Sbjct: 240 DDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVEV 299

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           A +L  ++     KP    Y  ++KG+ R  +++DA    +EM  K  PPN   + +LI 
Sbjct: 300 AIQLFRSM---PCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILIN 356

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
              + G    A   L +M   G TP    ++ + +G    G+ D A K+
Sbjct: 357 SLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKL 405



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 133/308 (43%), Gaps = 40/308 (12%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + +E M+ Y         ++II    + G VD+A+ + N   +  C+   L +N++L   
Sbjct: 165 EVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLN---SMVCKPDALGFNAVLKGF 221

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM--------- 113
           C  + +H A  LI +M R      + T+ IL++  C +G +  A +  ++M         
Sbjct: 222 CRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDI 281

Query: 114 ----------SDKGF-------------NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
                     S++G               P +   + +++GL  A   E A +++ +M+ 
Sbjct: 282 VTYSSLLNGFSEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVG 341

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +    +  TFN LI ++C+ G V+  +E+   +   G   D+ TY  LI   S+ G +D+
Sbjct: 342 KDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQGRLDD 401

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV--YTML 268
           A +LL  +     KP    Y   +KG+ R  ++ DA    +EM      PN     Y   
Sbjct: 402 ALKLLSTM---SCKPDAISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTFKYANH 458

Query: 269 ITMCGRGG 276
           + M  R G
Sbjct: 459 LLMPNRAG 466



 Score = 87.8 bits (216), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 6/256 (2%)

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           + C+  L   A  L+ +M R G  PD   Y+ L+N +   G + +A + L  M  K   P
Sbjct: 51  SFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCK---P 107

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                +  ++GL  A   E   +++ +M+++G   +  TF+ LI ++C++  V+  VE+ 
Sbjct: 108 NTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVL 167

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + K G   D   Y I+I ++S+ G +D+A RLL+++V    KP    +  ++KG  R 
Sbjct: 168 EQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMV---CKPDALGFNAVLKGFCRA 224

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            ++ DA    ++M     P     + +LI M  + G    A     +M     TP    +
Sbjct: 225 ERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTY 284

Query: 301 DLVTDGLKNCGKHDLA 316
             + +G    G  ++A
Sbjct: 285 SSLLNGFSEQGLVEVA 300


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  114 bits (286), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 8/284 (2%)

Query: 54  LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           +Y+ ++  LC+ KL   AY L   M+ K   PD  TY  L+  +C  G++ +A     EM
Sbjct: 103 MYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEM 162

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
             K   P V   ++L+ GL   G ++  K ++  MIKQ    D+ T +SLI+      + 
Sbjct: 163 RLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKA 222

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
                ++ ++ + G+  D+ +Y I+I  +SKA M+DEA  L   +      P    Y+ +
Sbjct: 223 NKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTL 282

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
           I G+ + G+    +    EM+  G   N   Y+ L+ +  + G F  A     ++ + G 
Sbjct: 283 IDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGF 342

Query: 294 TPISRCFDLVTDGLKNCGK--------HDLAEKIELLEVSLRSV 329
            P    ++++ DGL   G+        HDL  K   L+V L +V
Sbjct: 343 EPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTV 386



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 126/287 (43%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S+II    K  LV +A +++ +         V+ YN+L++  C V     A  L   M  
Sbjct: 105 SMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRL 164

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           K  VP+  ++ IL++  C  G ++  +  L  M  +   P V     L+ G         
Sbjct: 165 KNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANK 224

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+ + N M + G  +DL ++N +I  + K+  V+  V ++  +    +  D  TY  LI 
Sbjct: 225 ARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLID 284

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K G I   + L+  +   G       Y+ ++  + + G FD A   F+++K KG  P
Sbjct: 285 GLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEP 344

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           N   Y +L+    + GR  +A     ++   G     R + ++ +GL
Sbjct: 345 NMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGL 391



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 140/297 (47%), Gaps = 9/297 (3%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F   G +++A+ +FN+    N    V  +N L+  LC+     G  +++  M
Sbjct: 138 TYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVM 197

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I++   PD  T + L++ +    K  +A+     M+  G    +R  ++++ GL  A  +
Sbjct: 198 IKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMV 257

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M  +    D  T+++LI+ + K G + +  ++   +   G  A+V TY  L
Sbjct: 258 DEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSL 317

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  + K+G  D A R+   + + G +P    Y  ++ G+ + G+  DA   F ++ IKG+
Sbjct: 318 LNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGY 377

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
             +  +YT++I    R   F EA          G TP +  ++++   L    K+ L
Sbjct: 378 RLDVRLYTVMINGLCREALFDEA---------YGCTPNAVTYEIIIRALFKNDKNKL 425



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 9/262 (3%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+  N+  +  + +++I+   K G V     V       + +  V+  +SL+     VK 
Sbjct: 162 MRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKK 221

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            + A  +   M + G   D R+Y I++N    +  + EA    +EM  K   P       
Sbjct: 222 ANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYST 281

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G +     ++++M   G   ++ T++SL+  +CKSG  +  + ++  +   G
Sbjct: 282 LIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKG 341

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              ++ TY IL+  + K G + +A  + H+L+  G++    LY  +I G+ R   FD+A+
Sbjct: 342 FEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEAY 401

Query: 248 CFFSEMKIKGHPPNRPVYTMLI 269
                    G  PN   Y ++I
Sbjct: 402 ---------GCTPNAVTYEIII 414



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 16/227 (7%)

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
           +G   D    +IL+N++    ++  A   L ++   G+ P       L++GL     ++ 
Sbjct: 4   RGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKK 63

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A    + +I +GF LD  ++ +LI  +CKSGE +                D   Y ++I 
Sbjct: 64  ALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETK--------------APDQFMYSMIIN 109

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + K  ++ +A+ L   +V     P    Y  +I G    GQ +DA   F+EM++K   P
Sbjct: 110 RLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVP 169

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDLVTDG 306
           N   + +LI    + G      + L  M +  + P +  C  L+ DG
Sbjct: 170 NVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLI-DG 215



 Score = 47.4 bits (111), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 47/106 (44%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           +W  I+ M+    S +  T S ++    K G  D A+ +F K      +  ++ YN L+ 
Sbjct: 295 VWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVD 354

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
            LC+      A  +   ++ KG+  D R Y +++N  C      EA
Sbjct: 355 GLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEA 400


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 1/292 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++++   K GLV  A  + ++         V  YNSL+   C    F GA  L+  M+ 
Sbjct: 200 NMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVM 259

Query: 81  KGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139
           K  V PD  T+ ILV+A C  G + EA+     M  +G  P V   + L+ G    G + 
Sbjct: 260 KEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMS 319

Query: 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199
            AK++ ++M+++G + ++ ++++LI   CK   V+  + +   + +  L  D  TY  L+
Sbjct: 320 EAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259
             +SK+G +   + L+  +   G  P    Y  ++    +R   D A   F  +   G  
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439

Query: 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           PN   Y +LI    +GGR   A      ++  G  P  R ++++ +GL+  G
Sbjct: 440 PNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 1/295 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           TLS+ I      G +  A  V  K              +L+  LC       A  L    
Sbjct: 93  TLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHA 152

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + KGF  D+  Y  L+N  C  GK R+A E L++M   G  P +   +++V GL   G +
Sbjct: 153 VSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLV 212

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS-VCKLGLCADVSTYKI 197
             A  + ++M+ +G  +D+ T+NSLI   C +G+ +  V +    V K  +  DV T+ I
Sbjct: 213 TEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNI 272

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+ A+ K GM+ EA  +   +++ G +P       ++ G   RG   +A   F  M  +G
Sbjct: 273 LVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERG 332

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN   Y+ LI    +     EA   L EM +  L P +  ++ + DGL   G+
Sbjct: 333 KLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGR 387



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 136/284 (47%), Gaps = 1/284 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77
           T + +I  F   G    AV + N+     + +  V  +N L+ ALC++ +   A  +   
Sbjct: 233 TYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGL 292

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           MI++G  PD  +   L+N WC  G M EA+E    M ++G  P V     L+ G      
Sbjct: 293 MIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKM 352

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           ++ A +++ +M ++  V D  T+N L++ + KSG V +  ++  ++   G   D+ TY +
Sbjct: 353 VDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNV 412

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    K   +D+A  L  ++V+ G  P    Y  +I G+ + G+   A   F  + +KG
Sbjct: 413 LLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKG 472

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
             PN   Y ++I    R G   EA   L+EM + G  P +  FD
Sbjct: 473 CRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFD 516



 Score = 97.1 bits (240), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 131/291 (45%), Gaps = 6/291 (2%)

Query: 15  VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYAL 74
           V P TL+ +++     G    A+ +++   +       + Y +L+  LC++     A  L
Sbjct: 124 VDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIEL 183

Query: 75  IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
           +R+M + G  P+   Y ++V+  C  G + EA     EM  KG    V   + L+ G   
Sbjct: 184 LRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCG 243

Query: 135 AGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
           AG  + A +++N+M+ K+    D+ TFN L++ +CK G V     ++  + K GL  DV 
Sbjct: 244 AGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVV 303

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           +   L+      G + EA  +   +VE G  P    Y+ +I G  +    D+A    +EM
Sbjct: 304 SCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEM 363

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
             +   P+   Y  L+    + GR +   + +  M   G  P     DL+T
Sbjct: 364 HQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAP-----DLIT 409



 Score = 90.9 bits (224), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 112/251 (44%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++++   K G+V  A  VF        +  V+  N+L+   C       A  +  RM
Sbjct: 269 TFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRM 328

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G +P+  +Y+ L+N +C    + EA   L EM  +   P     + L+ GL  +G +
Sbjct: 329 VERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRV 388

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                +V  M   G   DL T+N L++   K   ++  + ++  +   G+  ++ TY IL
Sbjct: 389 LYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNIL 448

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +  A  +   L   G +P    Y  +I G+ R G  D+A     EM   G 
Sbjct: 449 IDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGF 508

Query: 259 PPNRPVYTMLI 269
           PPN   +  L+
Sbjct: 509 PPNAVTFDPLV 519



 Score = 85.5 bits (210), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 106/211 (50%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
            G +  A EVF++         V+ Y++L+   C+VK+   A  L+  M ++  VPD  T
Sbjct: 315 RGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVT 374

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           Y  L++    SG++    + ++ M   G  P +   ++L+   L    L+ A  +   ++
Sbjct: 375 YNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIV 434

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
             G   ++ T+N LI+ +CK G ++   E++  +   G   ++ TY I+I  + + G++D
Sbjct: 435 DTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLD 494

Query: 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
           EA  LL  +V+DG  P    + P+++ +  +
Sbjct: 495 EAEALLLEMVDDGFPPNAVTFDPLVRALLEK 525



 Score = 77.8 bits (190), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 2/264 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAI 92
           D+AV  F++    +    ++  N LL ++ + K +    +L   +  KG   P   T +I
Sbjct: 37  DDAVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLSI 96

Query: 93  LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152
            +N+    G+M  A   + ++  +GF         L++GL   G    A  + +  + +G
Sbjct: 97  FINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKG 156

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
           F  D   + +LI  +CK G+    +E+   + K G+  ++  Y +++  + K G++ EA 
Sbjct: 157 FSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEAC 216

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPNRPVYTMLITM 271
            L   +V  G       Y  +I G    GQF  A    +EM +K    P+   + +L+  
Sbjct: 217 GLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDA 276

Query: 272 CGRGGRFVEAANYLVEMTEMGLTP 295
             + G   EA N    M + GL P
Sbjct: 277 LCKLGMVAEARNVFGLMIKRGLEP 300



 Score = 60.8 bits (146), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 84/182 (46%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S +I  + K  +VD A+ +  +    N     + YN LL  L +       + L+  M  
Sbjct: 341 STLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRA 400

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G  PD  TY +L++ +     + +A    Q + D G +P +R  ++L+ GL   G +++
Sbjct: 401 SGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKA 460

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           AK++   +  +G   ++ T+N +I  + + G ++    +   +   G   +  T+  L+ 
Sbjct: 461 AKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLVR 520

Query: 201 AV 202
           A+
Sbjct: 521 AL 522



 Score = 52.0 bits (123), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W  +E M+    +    T +++++++ K   +D A+ +F           +  YN L+  
Sbjct: 392 WDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDG 451

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+      A  + + +  KG  P+ RTY I++N     G + EA+  L EM D GF P 
Sbjct: 452 LCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPN 511

Query: 122 VRGRDLLVQGLL 133
               D LV+ LL
Sbjct: 512 AVTFDPLVRALL 523


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + ++  + K G    A+E+ +   +      V  YN L+  LC        Y L+R M
Sbjct: 270 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 329

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++   P++ TY  L+N + + GK+  A + L EM   G +P     + L+ G ++ G  
Sbjct: 330 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 389

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A +M   M  +G      ++  L++ +CK+ E +     Y  + + G+C    TY  +
Sbjct: 390 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 449

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + K G +DEA  LL+ + +DG  P    Y+ +I G  + G+F  A      +   G 
Sbjct: 450 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 509

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            PN  +Y+ LI  C R G   EA      M   G T     F+++   L   GK   AE+
Sbjct: 510 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 569



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 136/295 (46%), Gaps = 1/295 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S +I  F K G    A E+  +          ++Y++L++  C +     A  +   M
Sbjct: 480 TYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAM 539

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G   D  T+ +LV + C +GK+ EA+EF++ M+  G  P     D L+ G  N+G  
Sbjct: 540 ILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEG 599

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A  + ++M K G      T+ SL++ +CK G +    +   S+  +    D   Y  L
Sbjct: 600 LKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 659

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           + A+ K+G + +A  L   +V+    P    Y  +I G+ R+G+   A  F  E + +G+
Sbjct: 660 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 719

Query: 259 P-PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
             PN+ +YT  +    + G++     +  +M  +G TP     + + DG    GK
Sbjct: 720 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGK 774



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 144/323 (44%), Gaps = 3/323 (0%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M  + LS +  T + +I+     G    A+++F    A       + Y  LL  LC+   
Sbjct: 364 MLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAE 423

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A     RM R G    + TY  +++  C +G + EA   L EMS  G +P +     
Sbjct: 424 FDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSA 483

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G  ++AK++V ++ + G   +   +++LI   C+ G ++  + +Y ++   G
Sbjct: 484 LINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEG 543

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T+ +L+ ++ KAG + EA   +  +  DG  P    +  +I G    G+   AF
Sbjct: 544 HTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAF 603

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             F EM   GH P    Y  L+    +GG   EA  +L  +  +     +  ++ +   +
Sbjct: 604 SVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAM 663

Query: 308 KNCGKHDLAEKIELL-EVSLRSV 329
             C   +LA+ + L  E+  RS+
Sbjct: 664 --CKSGNLAKAVSLFGEMVQRSI 684



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 144/318 (45%), Gaps = 3/318 (0%)

Query: 7   LMKPYNL-SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           LM  Y L + +P    ++I  + + G++ +++E+F     +     V   N++L ++ + 
Sbjct: 152 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKS 211

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                 ++ ++ M+++   PD  T+ IL+N  C+ G   ++   +Q+M   G+ P +   
Sbjct: 212 GEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTY 271

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + ++      G  ++A ++++ M  +G   D+ T+N LI  +C+S  +     +   + K
Sbjct: 272 NTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRK 331

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
             +  +  TY  LI   S  G +  A +LL+ ++  G  P    +  +I G    G F +
Sbjct: 332 RMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKE 391

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F  M+ KG  P+   Y +L+    +   F  A  + + M   G+      +  + D
Sbjct: 392 ALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 451

Query: 306 GLKNCGKHDLAEKIELLE 323
           GL  C    L E + LL 
Sbjct: 452 GL--CKNGFLDEAVVLLN 467



 Score =  100 bits (249), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 117/264 (44%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++  LC+      A  L+  M + G  PD  TY+ L+N +C  G+ + A+E +  
Sbjct: 444 ITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCR 503

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           +   G +P       L+      G L+ A ++   MI +G   D  TFN L+ ++CK+G+
Sbjct: 504 IYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 563

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           V    E    +   G+  +  ++  LI     +G   +AF +   + + GH P    Y  
Sbjct: 564 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 623

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
           ++KG+ + G   +A  F   +       +  +Y  L+T   + G   +A +   EM +  
Sbjct: 624 LLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRS 683

Query: 293 LTPISRCFDLVTDGLKNCGKHDLA 316
           + P S  +  +  GL   GK  +A
Sbjct: 684 ILPDSYTYTSLISGLCRKGKTVIA 707



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  +N L+  LC    F  +  L+++M + G+ P   TY  +++ +C  G+ + A E L 
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 292

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M  KG +  V   ++L+  L  +  +     ++  M K+    +  T+N+LI      G
Sbjct: 293 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 352

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           +V    ++   +   GL  +  T+  LI      G   EA ++ + +   G  P    Y 
Sbjct: 353 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 412

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            ++ G+ +  +FD A  F+  MK  G    R  YT +I    + G   EA   L EM++ 
Sbjct: 413 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 472

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           G+ P    +  + +G    G+   A++I
Sbjct: 473 GIDPDIVTYSALINGFCKVGRFKTAKEI 500



 Score = 77.8 bits (190), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 36/296 (12%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-------R 104
            ++YN+LL A+C+      A +L   M+++  +PD  TY  L++  C  GK        +
Sbjct: 653 TVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAK 712

Query: 105 EAQE-----------------------------FLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           EA+                              F ++M + G  P +   + ++ G    
Sbjct: 713 EAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRM 772

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G +E    ++ +M  Q    +L T+N L+    K  +V     +Y S+   G+  D  T 
Sbjct: 773 GKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTC 832

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             L+  + ++ M++   ++L   +  G +     +  +I      G+ + AF     M  
Sbjct: 833 HSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTS 892

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
            G   ++     ++++  R  RF E+   L EM++ G++P SR +  + +GL   G
Sbjct: 893 LGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVG 948



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%)

Query: 13   LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
            + V   T +++I +   +G ++ A ++    T+          ++++  L     F  + 
Sbjct: 860  VEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESR 919

Query: 73   ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
             ++  M ++G  P+ R Y  L+N  C  G ++ A    +EM      PP      +V+ L
Sbjct: 920  MVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRAL 979

Query: 133  LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
               G  + A  ++  M+K   V  + +F +L+   CK+G V   +E+   +   GL  D+
Sbjct: 980  AKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDL 1039

Query: 193  STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +Y +LI  +   G +  AF L   +  DG     + Y  +I+G+  R
Sbjct: 1040 VSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLAR 1087



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 8/316 (2%)

Query: 12   NLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFH 69
            NL  +P   T + +I+ + + G ++   ++  +    N    +  YN LL    + K   
Sbjct: 752  NLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVS 811

Query: 70   GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129
             ++ L R +I  G +PDK T   LV   C S  +    + L+    +G        ++L+
Sbjct: 812  TSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLI 871

Query: 130  QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189
                  G +  A  +V  M   G  LD +T ++++  + ++   +    + + + K G+ 
Sbjct: 872  SKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGIS 931

Query: 190  ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--PIIKGMFRRGQFDDAF 247
             +   Y  LI  + + G I  AF +   ++   HK  P   A   +++ + + G+ D+A 
Sbjct: 932  PESRKYIGLINGLCRVGDIKTAFVVKEEMI--AHKICPPNVAESAMVRALAKCGKADEAT 989

Query: 248  CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
                 M      P    +T L+ +C + G  +EA    V M+  GL      ++++  GL
Sbjct: 990  LLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGL 1049

Query: 308  KNCGKHDLAEKIELLE 323
              C K D+A   EL E
Sbjct: 1050 --CAKGDMALAFELYE 1063



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 4/210 (1%)

Query: 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178
           NP V   D+L++  L  G ++ + ++   M   GF   + T N+++ ++ KSGE      
Sbjct: 162 NPSVY--DILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWS 219

Query: 179 MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238
               + K  +C DV+T+ ILI  +   G  +++  L+  + + G+ P    Y  ++    
Sbjct: 220 FLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYC 279

Query: 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISR 298
           ++G+F  A      MK KG   +   Y MLI    R  R  +    L +M +  + P   
Sbjct: 280 KKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEV 339

Query: 299 CFDLVTDGLKNCGKHDLAEKI--ELLEVSL 326
            ++ + +G  N GK  +A ++  E+L   L
Sbjct: 340 TYNTLINGFSNEGKVLIASQLLNEMLSFGL 369


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 1/268 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           VL YN++L AL +  L   A      M+  G  P+  TY ILV A C  G  +EA   L+
Sbjct: 156 VLAYNAVLLALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILR 214

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           +M   G  P V   + LV     AG ++ A+++V  M + G   +L TFNS++  +CK+G
Sbjct: 215 DMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAG 274

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
           ++E   +++  + + GL  D  +Y  L+    KAG   EA  +   + + G  P    + 
Sbjct: 275 KMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFT 334

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
            +I  M + G  + A     +M+ +G   N   +T LI    + G   +A   +  M + 
Sbjct: 335 SLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQC 394

Query: 292 GLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            + P   C++ + +G    G+ D A ++
Sbjct: 395 RIKPSVVCYNALINGYCMVGRMDEAREL 422



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 15/308 (4%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +  M+   L ++  T + +I+ F K G +D+A+           +  V+ YN+L+   C 
Sbjct: 353 VRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCM 412

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V     A  L+  M  KG  PD  TY+ +++A+C +     A E  Q+M +KG  P    
Sbjct: 413 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAIT 472

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              L++ L     L  A  +   MIK G   D  T+ SLI+  CK G VE  + ++  + 
Sbjct: 473 YSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMV 532

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA------------- 231
           K G+  DV TY +LI  +SK+    EA +LL  L  +   P  + Y              
Sbjct: 533 KAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKS 592

Query: 232 --PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
              ++KG   +G  ++A   +  M  +    +  VY++LI    R G  ++A ++  +M 
Sbjct: 593 VLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQML 652

Query: 290 EMGLTPIS 297
           + G  P S
Sbjct: 653 QGGFAPNS 660



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 4/305 (1%)

Query: 15  VSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V+P   T ++++      G    A+ +        C   V+ YN+L+ A        GA 
Sbjct: 186 VAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 245

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M   G  P+  T+  +VN  C +GKM +A++   EM  +G  P     + LV G 
Sbjct: 246 RLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGY 305

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
             AG    A  +  +M ++G + D+ TF SLI  +CK+G +E  V +   + + GL  + 
Sbjct: 306 CKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNE 365

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            T+  LI    K G +D+A   +  + +   KP    Y  +I G    G+ D+A     E
Sbjct: 366 VTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHE 425

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG  P+   Y+ +I+   +      A     +M E G+ P +  +  +   L  CG+
Sbjct: 426 MEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL--CGE 483

Query: 313 HDLAE 317
             L++
Sbjct: 484 KRLSD 488



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 138/301 (45%), Gaps = 3/301 (0%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++  + K G    A+ VF + T       V+ + SL+  +C+      A  L+R+M  +G
Sbjct: 301 LVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERG 360

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
              ++ T+  L++ +C  G + +A   ++ M      P V   + L+ G    G ++ A+
Sbjct: 361 LQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEAR 420

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
           +++++M  +G   D+ T++++I   CK+ +     E+   + + G+  D  TY  LI  +
Sbjct: 421 ELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVL 480

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
                + +A  L  N+++ G +P    Y  +I G  + G  + A     +M   G  P+ 
Sbjct: 481 CGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDV 540

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322
             Y++LI    +  R +EA   L ++      P +  +D +   +  C K +L   + LL
Sbjct: 541 VTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDAL---MHCCRKAELKSVLALL 597

Query: 323 E 323
           +
Sbjct: 598 K 598



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 108/266 (40%), Gaps = 50/266 (18%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G +D A E+ ++  A   +  V+ Y++++ A C+    H A+ L ++M+ KG +PD  TY
Sbjct: 414 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 473

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
           + L+   C   ++ +A    + M   G  P       L+ G    G +ESA  + +KM+K
Sbjct: 474 SSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVK 533

Query: 151 QGFVLDLETFNSLIETICKSGEV------------------------------------- 173
            G + D+ T++ LI  + KS                                        
Sbjct: 534 AGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSV 593

Query: 174 -----EFCVE--------MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
                 FC++        +Y S+       D S Y +LI    +AG + +A      +++
Sbjct: 594 LALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQ 653

Query: 221 DGHKPFPSLYAPIIKGMFRRGQFDDA 246
            G  P  +    +I+G+F  G   +A
Sbjct: 654 GGFAPNSTSTISLIRGLFENGMVVEA 679



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 95/227 (41%), Gaps = 21/227 (9%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G V++A+ + +K         V+ Y+ L+  L +      A  L+ ++
Sbjct: 507 TYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566

Query: 79  IRKGFVPDKRTYAILVN---------------AWCSSGKMREAQEFLQEMSDKGFNPPVR 123
             +  +P    Y  L++                +C  G M EA +  Q M D+ +N    
Sbjct: 567 YHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGS 626

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG---EVEFCVEMY 180
              +L+ G   AG +  A     +M++ GF  +  +  SLI  + ++G   E +  ++  
Sbjct: 627 VYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 686

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227
            + C L   AD    K LI      G +D    +LH + +DG  P P
Sbjct: 687 LNYCSL---ADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPSP 730


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++II   G+ GL++   E+F++  +    + V  Y +L+ A      +  +  L+ RM R
Sbjct: 152 TIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKR 211

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQ--EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +   P+  TY  ++NA C+ G +          EM  +G  P +   + L+      G  
Sbjct: 212 ERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLG 270

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+ +   MI+ G V ++ T++ ++ET  K G++E    +   +   G   D+S+Y +L
Sbjct: 271 DEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVL 330

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K G I EA  +   +   G  P  S Y+ ++    + G++DD    F +MK    
Sbjct: 331 IEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSA 390

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +LI + G GG F E      ++ +  + P    ++ +       G H+ A+K
Sbjct: 391 EPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKK 450

Query: 319 I 319
           I
Sbjct: 451 I 451



 Score =  114 bits (284), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRR 77
           + + +I  +G++G  + ++E+  +         +L YN+++ A     L + G   L   
Sbjct: 185 SYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAE 244

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  PD  TY  L++A  + G   EA+   + M + G  P +     +V+     G 
Sbjct: 245 MRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK 304

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE    ++ +M  +G++ D+ ++N LIE   K G ++  ++++  +   G   + STY I
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    K G  D+   L   + E   +P  + Y  +I+     G F +    F ++  + 
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PN   Y  L+  CG+GG   +A   L  M   G+ P S+ +  + +       +D A
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEA 483



 Score = 97.8 bits (242), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 36/350 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           +E MK   +S +  T + +I    +  L  +  + +F +      Q  ++ YN+LL A  
Sbjct: 206 LERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACA 265

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              L   A  + + MI  G VP+  TY+ +V  +   GK+ +    L+EM  +G+ P + 
Sbjct: 266 ARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDIS 325

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++L++     G ++ A  +  +M   G V +  T++ L+    K G  +   E++  +
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM 385

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV------------------------ 219
            +     D +TY ILI    + G   E   L H+LV                        
Sbjct: 386 KESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLH 445

Query: 220 EDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ED  K           P    Y+ +I+   +   +D+A   F+ M   G       Y  L
Sbjct: 446 EDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSL 505

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           I    RGG + E    L  M E G++  ++ F  + +G +  G+++ A K
Sbjct: 506 IHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 119/273 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+E FGK G ++    +  +  +      +  YN L+ A  ++     A  + ++M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP+  TY+IL+N +   G+  + +E   +M +    P     ++L++     GY 
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYF 410

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    + + ++ +    ++ET+  L+    K G  E   ++ + +   G+      Y  L
Sbjct: 411 KEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGL 470

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  +A + DEA    + + E G K     Y  +I    R G + +     S M+  G 
Sbjct: 471 IEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGI 530

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             N   ++ +I    + G++ EA    VEM +M
Sbjct: 531 SRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKM 563



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR-- 76
           + +++IE   K G +  A++VF +  A  C      Y+ LL    +    HG Y  +R  
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK----HGRYDDVREL 381

Query: 77  --RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
             +M      PD  TY IL+  +   G  +E      ++ D+  +P +   + LV     
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGK 441

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G  E AK+++  M  +G V   + ++ LIE   ++   +  +  + ++ ++G  + + T
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA-------- 246
           Y  LI   ++ G+  E   +L  + E G       ++ II+G  + GQ+++A        
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEME 561

Query: 247 -----------------FCF----------FSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
                            +CF          F E+K  G  P+   Y M++ +  + GR+ 
Sbjct: 562 KMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWD 621

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDG 306
           +A+  L EM +  ++ I +    +  G
Sbjct: 622 DASELLDEMIKTRVSSIHQVIGQMIKG 648



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P++  Y I+++     G + +  E   EM+ +G    V     L+      G  E++ ++
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLEL 205

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEF--CVEMYYSVCKLGLCADVSTYKILIPAV 202
           + +M ++    ++ T+N++I   C  G++++   + ++  +   G+  D+ TY  L+ A 
Sbjct: 206 LERMKRERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSAC 264

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           +  G+ DEA  +   ++E G  P  + Y+ I++   + G+ +       EM+ +G+ P+ 
Sbjct: 265 AARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDI 324

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             Y +LI    + G   EA +   +M   G  P +  + ++ +     G++D
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD 376



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 36/324 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  +      T +++I  FG+ G     V +F+     N    +  Y  L+FA  +  L
Sbjct: 385 MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGL 444

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M  KG VP  + Y+ L+ A+  +    EA      M++ G    +   + 
Sbjct: 445 HEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNS 504

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G  +  + ++++M + G   + ++F+ +IE   +SG+ E  ++ +  + K+ 
Sbjct: 505 LIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMR 564

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T + ++     AG++DE+      +   G  P    Y  ++    + G++DDA 
Sbjct: 565 CELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDAS 624

Query: 248 CFFSEM--------------KIKGHPPNRPVYTMLITM--------CGRGGRFV------ 279
               EM               IKG   +   + M+  +        CG G RF       
Sbjct: 625 ELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEA 684

Query: 280 --------EAANYLVEMTEMGLTP 295
                    AA  L E T+ GL P
Sbjct: 685 LWWLGQKGRAARVLTEATKRGLFP 708


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 8/272 (2%)

Query: 45  AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104
             N +  V+ Y+ ++ ALC+ +    A  L   M  +G  P   +Y  L+  W       
Sbjct: 235 GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM--W------E 286

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA+    EM ++G  P V   ++L+  L   G +  AK ++  MI++G V +L T+NSLI
Sbjct: 287 EAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 346

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
           E  C  G++    E++ S+   G   DV  Y +LI    K   ++EA +L + +++ G +
Sbjct: 347 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR 406

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P    Y  ++ G+F+ G+  DA   F  MK+ G P +  +Y + +    + G   EA   
Sbjct: 407 PDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMEL 466

Query: 285 LVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++    +     CF+ + DGL   GK + A
Sbjct: 467 FNKLKSYNIKLDIECFNCLIDGLCKAGKLETA 498



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 138/294 (46%), Gaps = 2/294 (0%)

Query: 34  DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93
           + A  +FN+      Q  V+ +N L+  LC+      A  L+  MI++G VP+  TY  L
Sbjct: 286 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 345

Query: 94  VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF 153
           +  +C  G +  A+E    M  KG  P V    +L+ G      +E A ++ N M++ G 
Sbjct: 346 IEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGK 405

Query: 154 VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213
             D++T+ +L+  + + G+V    +++  +   G+  D+  Y I +  + K G + EA  
Sbjct: 406 RPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAME 465

Query: 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273
           L + L     K     +  +I G+ + G+ + A+  F ++  +   P+   Y ++I    
Sbjct: 466 LFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFC 525

Query: 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327
           RGG+ V+A     +M + G TP    +  +  G     K  L + +ELL + ++
Sbjct: 526 RGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKK--LEKVVELLHMMVQ 577



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 4/273 (1%)

Query: 1   MWKTIELM--KPYNLSVSPQ--TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           MW+  + +  +  N  V P   T +++I+   K G V  A ++            +L YN
Sbjct: 284 MWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
           SL+   C V   + A  L   M  KG  PD   Y +L+N +C + K+ EA +    M   
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQV 403

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G  P V+    L+ GL   G +  AK++   M   G   DL  +   +  +CK+G +   
Sbjct: 404 GKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEA 463

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
           +E++  +    +  D+  +  LI  + KAG ++ A+ L   L ++  +P    Y  +I  
Sbjct: 464 MELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE 523

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269
             R GQ   A   F +M+  G  P++  Y  LI
Sbjct: 524 FCRGGQVVKANILFQKMEKNGCTPDKITYATLI 556



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 109/226 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +IE F   G +++A E+F    +  C+  V+ Y  L+   C+      A  L   M
Sbjct: 341 TYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGM 400

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           ++ G  PD +TY  L+      GK+ +A++    M   G    +    + + GL   G L
Sbjct: 401 LQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCL 460

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A ++ NK+      LD+E FN LI+ +CK+G++E   E++  + +  L  DV TY I+
Sbjct: 461 FEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIM 520

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           I    + G + +A  L   + ++G  P    YA +I+G F   + +
Sbjct: 521 IHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLE 566



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 127/280 (45%), Gaps = 17/280 (6%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           +  LL  L ++K +   + L  +M   G  PD  T  IL+N  C+  ++ E    +  + 
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
            +G+ P +     L++GL     +  A  +  +M K G   +  T+ +L++ +C++G + 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 175 FCVEMYY------SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS 228
             ++++       S+  +     V +Y I+I A+ K    DEA  L   +   G  P   
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
            Y  ++        +++A   F+EM  +G  PN   + +LI +  + G+ +EA + L  M
Sbjct: 279 SYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVM 330

Query: 289 TEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328
            + G+ P    ++ + +G   C   DL    EL  VS+ S
Sbjct: 331 IQRGIVPNLLTYNSLIEGF--CLVGDLNSARELF-VSMPS 367



 Score = 80.5 bits (197), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 116/274 (42%), Gaps = 14/274 (5%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           ++ Y +L+  LC       A  L  RM + G  P+  TY  L+   C +G +  A +  Q
Sbjct: 166 IVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQ 225

Query: 112 EMSDKG------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165
           EM +        F P V    +++  L      + A+ +  +M  QG    + ++ SL+ 
Sbjct: 226 EMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMW 285

Query: 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225
              K         ++  +   G+  +V T+ +LI  + K G + EA  LL  +++ G  P
Sbjct: 286 EEAK--------RLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVP 337

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  +I+G    G  + A   F  M  KG  P+   YT+LI    +  +  EA    
Sbjct: 338 NLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 397

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
             M ++G  P  + +  +  GL   GK   A+K+
Sbjct: 398 NGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKL 431



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 130/304 (42%), Gaps = 20/304 (6%)

Query: 30  HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89
           H  ++ + + FN   +F  Q  + L+N     +  ++    A+     M+     P   +
Sbjct: 43  HKSLNVSPQNFNTPISFQQQLSMFLHNCKTGNITAIQ----AFQFFHLMMYSNPTPPLSS 98

Query: 90  YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149
           +  L++         +      +M   G +P     ++L+  L N   +     ++  ++
Sbjct: 99  FTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGIL 158

Query: 150 KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209
           ++G++ D+ T+ +LI+ +C    +     ++  + KLG   +  TY  L+  + + G I 
Sbjct: 159 RRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNIS 218

Query: 210 EAFRLLHNLVEDGH------KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP 263
            A +L   ++ D        KP    Y+ II  + +  + D+A   F EMK++G  P   
Sbjct: 219 IALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVI 278

Query: 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323
            YT L+        + EA     EM   G+ P    F+++ D L  C +  + E  +LLE
Sbjct: 279 SYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVL--CKEGKVIEAKDLLE 328

Query: 324 VSLR 327
           V ++
Sbjct: 329 VMIQ 332



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 91/200 (45%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I  + K   V+ A++++N       +  V  Y +LL  L +      A  L   M  
Sbjct: 378 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 437

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G   D   Y I +N  C +G + EA E   ++        +   + L+ GL  AG LE+
Sbjct: 438 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 497

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A ++  K+ ++    D+ T+N +I   C+ G+V     ++  + K G   D  TY  LI 
Sbjct: 498 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 557

Query: 201 AVSKAGMIDEAFRLLHNLVE 220
              ++  +++   LLH +V+
Sbjct: 558 GFFESKKLEKVVELLHMMVQ 577



 Score = 65.5 bits (158), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 76/156 (48%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K   +MK Y +        + +    K+G +  A+E+FNK  ++N +  +  +N L+  L
Sbjct: 430 KLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGL 489

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
           C+      A+ L  ++ ++   PD  TY I+++ +C  G++ +A    Q+M   G  P  
Sbjct: 490 CKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDK 549

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158
                L++G   +  LE   ++++ M+++   LD+ 
Sbjct: 550 ITYATLIRGFFESKKLEKVVELLHMMVQRDVSLDVN 585



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 84/200 (42%), Gaps = 6/200 (3%)

Query: 3   KTIELMKPYN--LSVSP----QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN 56
           K  E MK YN  L V      +T   ++    + G V +A ++F     +     + +Y 
Sbjct: 389 KVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYG 448

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
             L  LC+      A  L  ++       D   +  L++  C +GK+  A E  +++  +
Sbjct: 449 IFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQE 508

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
              P V   ++++      G +  A  +  KM K G   D  T+ +LI    +S ++E  
Sbjct: 509 ELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKV 568

Query: 177 VEMYYSVCKLGLCADVSTYK 196
           VE+ + + +  +  DV+  +
Sbjct: 569 VELLHMMVQRDVSLDVNILR 588


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I  F K G V  A ++F+           ++YN+L+    +++    A  L   M
Sbjct: 338 TFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEM 397

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            +KG  PD  T+ ILV+     G+  +    L+++S  G  P     D+ V GL  AG L
Sbjct: 398 RKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRL 457

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A + +  M+++G    +  FNS+I    ++G  +   E Y  +   GL    ST   L
Sbjct: 458 DEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSL 517

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +S  G + EA  L+  ++E G       +  ++   F+RG    A   + EM+ +G 
Sbjct: 518 LMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGI 577

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   ++  I    + G   EA N  +EM   GL P +  ++ +  G   CGK + A K
Sbjct: 578 FPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALK 637

Query: 319 IE 320
           +E
Sbjct: 638 LE 639



 Score =  103 bits (256), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 126/287 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S II  F + G +     + +    F+C+     YN ++ A C       A A    M
Sbjct: 268 TFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLM 327

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           I +G  P   T+  ++NA+C  G + EA++    + + GF+P     + L+ G +    +
Sbjct: 328 IERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREI 387

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +M K+G   D  TFN L+    K G  E    +   +  LGL  D S + I 
Sbjct: 388 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDIS 447

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +  +  AG +DEA   L +++E G  P    +  +I    + G  D AF  +  M   G 
Sbjct: 448 VSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGL 507

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
            P+    + L+      GR  EA   + +M E GL+  +  F ++ D
Sbjct: 508 TPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLD 554



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 132/307 (42%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           + LM  ++   +    +++I      G   +A+  FN      C   V+ +N+++ A C+
Sbjct: 289 LHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCK 348

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L   +   GF P+   Y  L+N +    ++ +A    +EM  KG  P    
Sbjct: 349 EGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGIT 408

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            ++LV G    G  E   +++  +   G + D   F+  +  +C +G ++  +E    + 
Sbjct: 409 FNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDML 468

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
           + GL   +  +  +I A S+AG+ D+AF     +V  G  P PS  + ++ G+   G+  
Sbjct: 469 EKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQ 528

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A     +M  KG   N   +T+L+    + G  V A +   EM   G+ P    F    
Sbjct: 529 EATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFI 588

Query: 305 DGLKNCG 311
           DGL   G
Sbjct: 589 DGLSKQG 595



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 127/303 (41%), Gaps = 2/303 (0%)

Query: 7   LMKPYNLSVSPQTLSL--IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           LM      +SP  ++   +I  + + GL D A E +     F         +SLL  L  
Sbjct: 464 LMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSI 523

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  LI +MI KG   +   + +L++ +   G +  AQ    EM  +G  P V  
Sbjct: 524 NGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVA 583

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
               + GL   G +E A  +  +M+++G + +   +NSLI   CK G++   +++   + 
Sbjct: 584 FSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMR 643

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  D+ T  ++I  + K G +  A  +  ++ + G  P    Y  +I G  +     
Sbjct: 644 HRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMV 703

Query: 245 DAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304
           +A    + M   G  P+   Y + I       R   A   L E+   G+ P +  ++ + 
Sbjct: 704 NADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSML 763

Query: 305 DGL 307
           +G+
Sbjct: 764 NGV 766



 Score = 90.5 bits (223), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 4/316 (1%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   +  S   ++++ +   + G   N  ++F        Q C   ++ ++   C    
Sbjct: 222 MREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGC 281

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
            H   +L+  M +    P+   Y I++NA C  G+  +A  +   M ++G NP V   + 
Sbjct: 282 IHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT 341

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           ++      G +  A+++ + + + GF  +   +N+L+    K  E++    +Y  + K G
Sbjct: 342 VINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKG 401

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +  D  T+ IL+    K G  ++  RLL ++   G  P  SL+   + G+   G+ D+A 
Sbjct: 402 IAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAM 461

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTDG 306
            F  +M  KG  P+   +  +I    + G   +A      M   GLTP  S C  L+  G
Sbjct: 462 EFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLM-G 520

Query: 307 LKNCGKHDLAEKIELL 322
           L   G+  L E  EL+
Sbjct: 521 LSINGR--LQEATELI 534



 Score = 67.4 bits (163), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 1/183 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II    K G + +A+ VF           ++ YN+L+   C+      A  L+ RM
Sbjct: 653 TTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRM 712

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G  PD  TY I ++ +CSS +M  A   L E+   G  P     + ++ G+  +  L
Sbjct: 713 YASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC-SDIL 771

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A  +  +++K  FV ++ T N L+    K G  E  +   + + ++    D  TYKI+
Sbjct: 772 DRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERTLMWGHKLSEIPYAFDEITYKIM 831

Query: 199 IPA 201
             A
Sbjct: 832 DKA 834



 Score = 65.1 bits (157), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 1/169 (0%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           +   N ++  LC+      A  +   M + G  PD  TY  L+N +C +  M  A   + 
Sbjct: 651 IFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVN 710

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G NP +   ++ + G  ++  +  A  M+++++  G V +  T+NS++  +C S 
Sbjct: 711 RMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC-SD 769

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220
            ++  + +   + K+    +V T  +L+    K GM +      H L E
Sbjct: 770 ILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERTLMWGHKLSE 818


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ +   G   +A+ + +      C+     Y  L+   C++     A+ L   M
Sbjct: 462 TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P++ TY  L++ +C   K+  A   L+ M   G  P V+  ++L+ GL      
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++   MI++G   ++ T+ ++I+ +CK+G     +EM+  + + G   ++ TY  L
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G ++EA  L   L   G  P    Y  +I+     G+ + AF F   M   G 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 259 PPNRPVYTMLI 269
            P    Y +LI
Sbjct: 702 QPTLWTYGVLI 712



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 6/323 (1%)

Query: 9   KPYNLSVSPQTL---SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           K +   +SP T    S+I+    KH L D+A++VFN+     C+   + Y++L+  LC+ 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDL-DSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A+ LIR MI  G +P   T    + A C  G   +A     +M +KG  P V   
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL  +G L+ A  + ++M + G   +  T+N+LI  + ++  +++   +   + +
Sbjct: 359 TALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR 418

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   ++ TY  +I      G   +A  +++N+++ GH      Y  IIKG    G    
Sbjct: 419 NGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS 478

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M+  G  P+   YT LI    +  +   A     EM + GL P    +  + D
Sbjct: 479 ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 306 GLKNCGKHDLAEKIELLEVSLRS 328
           G   C    L     LLE   RS
Sbjct: 539 GY--CKDEKLDTATSLLEHMKRS 559



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 123/286 (43%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  ++A  +F       C+  V  Y +L+  LC   L   A  L  RM R G  P+  TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N    + +++ A   L  M   G +P +   + +++G    G  + A  ++N M++
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +L T+N++I+  C SG     + +   +   G   D  +Y  LI    K   ++ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           AF L + +V+DG  P    Y  +I G  +  + D A      MK  G  PN   Y +LI 
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIH 573

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +   F  A      M E G+ P    +  + DGL   G   LA
Sbjct: 574 GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 114/260 (43%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  V N      C   ++ YN ++   C +     A  ++  M+++G   +  TY  ++ 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C SG    A   L  M D G  P       L+ G      +ESA  + N+M+  G   
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP 528

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T+ +LI+  CK  +++    +   + + G   +V TY +LI  ++K      A  L 
Sbjct: 529 NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 588

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E+G  P    Y  +I G+ + G    A   F++M  +G  PN   Y+ LI   G+ 
Sbjct: 589 KVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           G+  EA N   E+   GL P
Sbjct: 649 GKVEEAENLFAELERHGLIP 668



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 16/304 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K Y +   P+   L++    + G   N V                 YN+++   C+ 
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT----------------YNTIIKGYCDS 473

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M   G  PD+ +Y  L+  +C   KM  A     EM D G  P     
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G      L++A  ++  M + G   +++T+N LI  + K        E+   + +
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  +I  + K G    A  + + ++E G  P    Y+ +I+ + + G+ ++
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F+E++  G  P+   Y  +I      G+   A N+L  M + G  P    + ++  
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 306 GLKN 309
           GLKN
Sbjct: 714 GLKN 717



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 119/283 (42%), Gaps = 2/283 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  L  + +I    K G V +A  +  K            Y S++   C       A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M ++G  P+  TY+ L+N  C SG++ EA + ++EM   G  P        +  L
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G  E A ++   M  +G   ++ T+ +LI  +C SG ++  + +++ + + G+  + 
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT 390

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   I  AF +L+ +  +G  P    Y  +IKG    G    A    + 
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           M  +GH  N   Y  +I      G    A   L  M + G  P
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 106/249 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S ++    + G+    ++ +++  +   Q  +L+YN+++ ALC+      A  +++++  
Sbjct: 184 SALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD  TY  ++   C    +  A +   +M+ +G  P       L+ GL ++G +  
Sbjct: 244 SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +MI  G +    T    I  +C  G  E    ++  +   G   +V TY  LI 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +  +G++  A  L H +  DG  P    Y  +I  +    +   AF   + M   G  P
Sbjct: 364 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 261 NRPVYTMLI 269
           N   Y  +I
Sbjct: 424 NIVTYNEMI 432



 Score = 82.0 bits (201), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 104/241 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L  + +         RM+ +G  P+   Y  ++NA C  G + +A+  ++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +   +P       ++ G      L+SA Q+ N+M K+G   +  T+++LI  +C SG V 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++   +   G+     T    I A+   G  ++A+RL  ++   G +P    Y  +I
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   G    A   F  M   G  PN   Y  LI +     R   A   L  M   G +
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 295 P 295
           P
Sbjct: 423 P 423



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 24/282 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K+G    A+E+FNK     C   +L Y+SL+ AL +      A  L   +
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
            R G +PD+ TY  ++ A+  SGK+  A  FL  M   G  P +    +L++GL N    
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 136 -----------------GYLESAKQMVNKMIKQGFVLD----LETFNSLIETICKSGEVE 174
                            GY  + +  V+ M  +   LD    ++  N+L+  +  +G   
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+  S+   GLC D   Y  L+ ++ +   +D A  +  ++   G +   + Y  +I
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
             + +  +  +A   F  M ++   P+  V  +LI    R G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAI-LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL RR++            I L+ +  S   M     FL  +S  G    +     L+  
Sbjct: 130 ALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIH 189

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G   +     ++M+ +G   +L  +N++I  +CK G V     +   V +  +  D
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD 249

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  +I    +   +D A ++ + + ++G +P    Y+ +I G+   G+ ++AF    
Sbjct: 250 TFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309

Query: 252 EMKIKGHPPNRPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           EM + G  P     T  +I +C  G  + +A    V+M   G  P    +  +  GL
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMGC-YEDAWRLFVDMKNKGCEPNVYTYTALISGL 365



 Score = 37.4 bits (85), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSLL +L  V+    A  + + M  +G       Y  L+ A C   + +EA+   + M 
Sbjct: 802 YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENML 861

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            + +NP    + +L+ GLL  GY +   + ++ M  + ++     +  L     K
Sbjct: 862 MRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 916


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ +   G   +A+ + +      C+     Y  L+   C++     A+ L   M
Sbjct: 462 TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P++ TY  L++ +C   K+  A   L+ M   G  P V+  ++L+ GL      
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++   MI++G   ++ T+ ++I+ +CK+G     +EM+  + + G   ++ TY  L
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G ++EA  L   L   G  P    Y  +I+     G+ + AF F   M   G 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 259 PPNRPVYTMLI 269
            P    Y +LI
Sbjct: 702 QPTLWTYGVLI 712



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 6/323 (1%)

Query: 9   KPYNLSVSPQTL---SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           K +   +SP T    S+I+    KH L D+A++VFN+     C+   + Y++L+  LC+ 
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDL-DSALQVFNQMAKEGCEPNTVTYSTLINGLCDS 298

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
              + A+ LIR MI  G +P   T    + A C  G   +A     +M +KG  P V   
Sbjct: 299 GRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ GL  +G L+ A  + ++M + G   +  T+N+LI  + ++  +++   +   + +
Sbjct: 359 TALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR 418

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G   ++ TY  +I      G   +A  +++N+++ GH      Y  IIKG    G    
Sbjct: 419 NGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS 478

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A      M+  G  P+   YT LI    +  +   A     EM + GL P    +  + D
Sbjct: 479 ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 306 GLKNCGKHDLAEKIELLEVSLRS 328
           G   C    L     LLE   RS
Sbjct: 539 GY--CKDEKLDTATSLLEHMKRS 559



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 123/286 (43%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  ++A  +F       C+  V  Y +L+  LC   +   A  L  RM R G  P+  TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTY 393

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N    + +++ A   L  M   G +P +   + +++G    G  + A  ++N M++
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +L T+N++I+  C SG     + +   +   G   D  +Y  LI    K   ++ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           AF L + +V+DG  P    Y  +I G  +  + D A      MK  G  PN   Y +LI 
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIH 573

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +   F  A      M E G+ P    +  + DGL   G   LA
Sbjct: 574 GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619



 Score =  102 bits (253), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 114/260 (43%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  V N      C   ++ YN ++   C +     A  ++  M+++G   +  TY  ++ 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C SG    A   L  M D G  P       L+ G      +ESA  + N+M+  G   
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP 528

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T+ +LI+  CK  +++    +   + + G   +V TY +LI  ++K      A  L 
Sbjct: 529 NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 588

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E+G  P    Y  +I G+ + G    A   F++M  +G  PN   Y+ LI   G+ 
Sbjct: 589 KVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           G+  EA N   E+   GL P
Sbjct: 649 GKVEEAENLFAELERHGLIP 668



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 16/304 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K Y +   P+   L++    + G   N V                 YN+++   C+ 
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT----------------YNTIIKGYCDS 473

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M   G  PD+ +Y  L+  +C   KM  A     EM D G  P     
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G      L++A  ++  M + G   +++T+N LI  + K        E+   + +
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  +I  + K G    A  + + ++E G  P    Y+ +I+ + + G+ ++
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F+E++  G  P+   Y  +I      G+   A N+L  M + G  P    + ++  
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 306 GLKN 309
           GLKN
Sbjct: 714 GLKN 717



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 119/283 (42%), Gaps = 2/283 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  L  + +I    K G V +A  +  K            Y S++   C       A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M ++G  P+  TY+ L+N  C SG++ EA + ++EM   G  P        +  L
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G  E A ++   M  +G   ++ T+ +LI  +C SG ++  + +++ + + G+  + 
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNT 390

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   I  AF +L+ +  +G  P    Y  +IKG    G    A    + 
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           M  +GH  N   Y  +I      G    A   L  M + G  P
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 106/249 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S ++    + G+    ++ +++  +   Q  +L+YN+++ ALC+      A  +++++  
Sbjct: 184 SALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD  TY  ++   C    +  A +   +M+ +G  P       L+ GL ++G +  
Sbjct: 244 SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +MI  G +    T    I  +C  G  E    ++  +   G   +V TY  LI 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +  +G++  A  L H +  DG  P    Y  +I  +    +   AF   + M   G  P
Sbjct: 364 GLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 261 NRPVYTMLI 269
           N   Y  +I
Sbjct: 424 NIVTYNEMI 432



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 104/241 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L  + +         RM+ +G  P+   Y  ++NA C  G + +A+  ++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +   +P       ++ G      L+SA Q+ N+M K+G   +  T+++LI  +C SG V 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++   +   G+     T    I A+   G  ++A+RL  ++   G +P    Y  +I
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   G    A   F  M   G  PN   Y  LI +     R   A   L  M   G +
Sbjct: 363 SGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 295 P 295
           P
Sbjct: 423 P 423



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 24/282 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K+G    A+E+FNK     C   +L Y+SL+ AL +      A  L   +
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
            R G +PD+ TY  ++ A+  SGK+  A  FL  M   G  P +    +L++GL N    
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 136 -----------------GYLESAKQMVNKMIKQGFVLD----LETFNSLIETICKSGEVE 174
                            GY  + +  V+ M  +   LD    ++  N+L+  +  +G   
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+  S+   GLC D   Y  L+ ++ +   +D A  +  ++   G +   + Y  +I
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
             + +  +  +A   F  M ++   P+  V  +LI    R G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 64.3 bits (155), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAI-LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL RR++            I L+ +  S   M     FL  +S  G    +     L+  
Sbjct: 130 ALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIH 189

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G   +     ++M+ +G   +L  +N++I  +CK G V     +   V +  +  D
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD 249

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  +I    +   +D A ++ + + ++G +P    Y+ +I G+   G+ ++AF    
Sbjct: 250 TFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309

Query: 252 EMKIKGHPPNRPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           EM + G  P     T  +I +C  G  + +A    V+M   G  P    +  +  GL
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMGC-YEDAWRLFVDMKNKGCEPNVYTYTALISGL 365



 Score = 37.4 bits (85), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 51/115 (44%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSLL +L  V+    A  + + M  +G       Y  L+ A C   + +EA+   + M 
Sbjct: 802 YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENML 861

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            + +NP    + +L+ GLL  GY +   + ++ M  + ++     +  L     K
Sbjct: 862 MRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASK 916


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 138/313 (44%), Gaps = 4/313 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
              + I+ F   G + NAV VF           V  +N LL AL +  L   A  +  RM
Sbjct: 257 AFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM 316

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R  + PD R+Y  L+ AWC++  + EA     EM + G  P V   + +++GLL     
Sbjct: 317 -RDRYAPDLRSYTALMLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRR 375

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A +M   M  +G   ++ T+  LI   CK G+++  +  +  +  +G   DV+TY  L
Sbjct: 376 PEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCL 435

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +     A  +D    LL  + + G  P    Y  +IK +  R   DDA   + +M  KG 
Sbjct: 436 LVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGL 495

Query: 259 PPNRPVYTMLITMCGRGGR-FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
            P    Y M++     GGR ++       EM   G+ P    + +  +G    G+ + A 
Sbjct: 496 EPTIHTYNMMMKSYFLGGRNYMMGCAVWEEMHRKGICPDVNSYTVFINGHIRHGRPEEAC 555

Query: 318 KI--ELLEVSLRS 328
           K   E+++  +++
Sbjct: 556 KYIEEMIQKGMKT 568



 Score = 81.3 bits (199), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 118/270 (43%), Gaps = 2/270 (0%)

Query: 50  QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109
              + Y  ++  L + + F    ALI+ M ++G +     + I + ++ ++G+++ A   
Sbjct: 219 HTTITYCKMVHILGKARQFQSMVALIQEMGKEGALC-MDAFKIAIKSFAAAGEIKNAVGV 277

Query: 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169
            + M   GF+  V   + L+  L   G    A Q+ ++M +  +  DL ++ +L+   C 
Sbjct: 278 FEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM-RDRYAPDLRSYTALMLAWCN 336

Query: 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229
           +  +     ++  + + GL  DV  +  +I  + +     EA ++   +   G  P    
Sbjct: 337 ARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWT 396

Query: 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289
           Y  +I+   +RG+ D A   F EM+  G  P+   YT L+   G   R       L EMT
Sbjct: 397 YTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMT 456

Query: 290 EMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           + G  P  R ++ +   L N    D A +I
Sbjct: 457 QKGCPPDGRTYNALIKLLTNRNMPDDAARI 486



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 34/222 (15%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K  ELMK    + +  T +++I +  K G +D A+  F +     CQ  V  Y  LL   
Sbjct: 380 KMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGY 439

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
              K      AL+  M +KG  PD RTY  L+    +     +A    ++M  KG  P +
Sbjct: 440 GNAKRMDRVTALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTI 499

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              +++++     G              + +++    +                 EM+  
Sbjct: 500 HTYNMMMKSYFLGG--------------RNYMMGCAVWE----------------EMH-- 527

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             + G+C DV++Y + I    + G  +EA + +  +++ G K
Sbjct: 528 --RKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMK 567



 Score = 43.9 bits (102), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 18  QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA-LCEVKLFHGAYALIR 76
           +T + +I+      + D+A  ++ K      +  +  YN ++ +     + +    A+  
Sbjct: 465 RTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGCAVWE 524

Query: 77  RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            M RKG  PD  +Y + +N     G+  EA ++++EM  KG   P
Sbjct: 525 EMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGMKTP 569


>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
          Length = 584

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 133/275 (48%), Gaps = 10/275 (3%)

Query: 55  YNSLLFALC-EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113
           YN+++ ALC E +++   ++++  M+++G  P+  TY  +V+A+C + ++R A   L  M
Sbjct: 172 YNAVVHALCGEFRMWE-VFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARM 230

Query: 114 SDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173
              G  P V     LV+G    G +  A  M + M+ +G+     ++N LI  +C  G++
Sbjct: 231 VSMGCTPNVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDL 290

Query: 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233
           +  ++ + S+ +  L  + +TY  L+   S AG +D A  + + +   G KP   +Y  +
Sbjct: 291 KGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNM 350

Query: 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM---CGRGGRFVEAANYLVEMTE 290
           I  + ++  FD A     +M +   PPN   +  LI     CGR GR   A N    M  
Sbjct: 351 IDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGR---ALNVFHGMRR 407

Query: 291 MGLTPISRCFDLVTDGLKNCGKHD--LAEKIELLE 323
            G  P  R ++ +  GL   G H    A  IE+L 
Sbjct: 408 NGCHPNDRTYNELLHGLFREGNHKDAFAMVIEMLN 442



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 136/323 (42%), Gaps = 31/323 (9%)

Query: 4   TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYNSLLFAL 62
            ++ M+   ++ +   L   I  F + G  D A++ F + +   C+   V +YN LL AL
Sbjct: 20  ALQEMRLRGVACTEDALVAAIGAFARAGSADRALKTFYRASDLGCRDPGVRVYNHLLDAL 79

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
               +      +   M + G  P+  TY +L+ A C + ++  A++ L EMS KG +P  
Sbjct: 80  LRENMVGAVVPVYDNMRKAGVDPNVYTYNLLIRALCQNDRVDAARKMLDEMSRKGCHPDE 139

Query: 123 RGRDLLVQGLLNAGYLESAK------------------------------QMVNKMIKQG 152
                +V G+   G +E A+                               +VN+M+++G
Sbjct: 140 VSHGTIVSGMCKLGRVEEARGFLAETVPVQASYNAVVHALCGEFRMWEVFSVVNEMVQRG 199

Query: 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212
              ++ T+ ++++  CK+ E+     +   +  +G   +V T+  L+    + G + +A 
Sbjct: 200 LQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTALVKGFFEDGKVHDAL 259

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            + H +V++G  P    Y  +I+G+   G    A  FF+ MK     PN   Y+ L+   
Sbjct: 260 SMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGF 319

Query: 273 GRGGRFVEAANYLVEMTEMGLTP 295
              G    A     EM   G  P
Sbjct: 320 SNAGDLDGAMLIWNEMKSSGCKP 342



 Score = 98.2 bits (243), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 35/288 (12%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK   L  +  T S +++ F   G +D A+ ++N+  +  C+  V++Y +++  LC+  +
Sbjct: 300 MKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMM 359

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A +LI +M+     P+  T+  L+   C  G++  A      M   G +P  R  + 
Sbjct: 360 FDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNE 419

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ GL   G  + A  MV +M+  GF L L T+N++I  +C+                  
Sbjct: 420 LLHGLFREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQ------------------ 461

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           +C                 M   A  LL  ++  G +P    +  II    + G+   A 
Sbjct: 462 MC-----------------MRKHAMLLLGRMMVQGIQPDAFTFNAIIHAYCKEGKVSIAA 504

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           C   +M     P N   YT+LI+     G+   A  YL++M   G+ P
Sbjct: 505 CLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKMLYEGICP 552



 Score = 94.7 bits (234), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 128/323 (39%), Gaps = 11/323 (3%)

Query: 1   MWKTIEL---MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS 57
           MW+   +   M    L  +  T + I++ F K   +  A  +  +  +  C   VL + +
Sbjct: 185 MWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRMACAILARMVSMGCTPNVLTFTA 244

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+    E    H A ++   M+ +G+ P   +Y +L+   C  G ++ A +F   M    
Sbjct: 245 LVKGFFEDGKVHDALSMWHWMVDEGWAPSTISYNVLIRGLCCIGDLKGALDFFNSMKRNA 304

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
             P       LV G  NAG L+ A  + N+M   G   ++  + ++I+ +CK    +   
Sbjct: 305 LLPNATTYSTLVDGFSNAGDLDGAMLIWNEMKSSGCKPNVVVYTNMIDVLCKKMMFDQAE 364

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            +   +       +  T+  LI  +   G +  A  + H +  +G  P    Y  ++ G+
Sbjct: 365 SLIDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGL 424

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT----MCGRGGRFVEAANYLVEMTEMGL 293
           FR G   DAF    EM   G   +   Y  +I     MC R      A   L  M   G+
Sbjct: 425 FREGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRK----HAMLLLGRMMVQGI 480

Query: 294 TPISRCFDLVTDGLKNCGKHDLA 316
            P +  F+ +       GK  +A
Sbjct: 481 QPDAFTFNAIIHAYCKEGKVSIA 503



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 2/218 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           I+ M   N   +  T + +I      G V  A+ VF+      C      YN LL  L  
Sbjct: 367 IDKMLMDNCPPNTVTFNTLIGRLCDCGRVGRALNVFHGMRRNGCHPNDRTYNELLHGLFR 426

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A+A++  M+  GF     TY  ++N  C     + A   L  M  +G  P    
Sbjct: 427 EGNHKDAFAMVIEMLNNGFELSLVTYNTVINCLCQMCMRKHAMLLLGRMMVQGIQPDAFT 486

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + ++      G +  A  ++ +M       ++  +  LI  +C  G++   +     + 
Sbjct: 487 FNAIIHAYCKEGKVSIAACLLGQMNAVNCPRNVVAYTILISELCNQGKLSNAMVYLLKML 546

Query: 185 KLGLCADVSTYKILIPAV-SKAGMIDEAFRLLHNLVED 221
             G+C + +T+ +L+ A+ +  G I     L   +VED
Sbjct: 547 YEGICPNEATWNVLVRAIFTNIGTIGP-IHLFKYIVED 583


>gi|302143887|emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M      V+ +T  ++I   G+ GL   AVE F K   FN +     YN++L 
Sbjct: 212 MWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILH 271

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  +K +     + ++M+ + + PD  TY I++      GK+ +    L+E+   GF+P
Sbjct: 272 CLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSP 331

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + GF   +  F +LI+ + ++G ++ C   +
Sbjct: 332 DFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFF 391

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + KLG   DV  Y ++I     AG ++ A  L   +   G  P    Y  +I+G+   
Sbjct: 392 DEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMA 451

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            +F++A     EM+ +G  PN  VY  L+      G+  EA   +  M + G
Sbjct: 452 EKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKG 503



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 122/308 (39%), Gaps = 35/308 (11%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N +  V  Y+ ++    E   F   + L+  MI +GF    RT+ IL+     +G  R A
Sbjct: 188 NYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRA 247

Query: 107 QE-----------------------------------FLQEMSDKGFNPPVRGRDLLVQG 131
            E                                     Q+M  + ++P +   ++++  
Sbjct: 248 VERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCT 307

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L+   +++ ++   GF  D  TFN L+  + K  +    +++   + ++G    
Sbjct: 308 KYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPS 367

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  +  LI  +S+AG +D        +++ G  P    Y  +I G    G+ + A   F 
Sbjct: 368 VLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFE 427

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM +KG  PN   Y  +I       +F EA + L EM   G  P    ++ +   L+N G
Sbjct: 428 EMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAG 487

Query: 312 KHDLAEKI 319
           K   A ++
Sbjct: 488 KLKEAHEV 495



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 6/209 (2%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F+     + +   V    L+++    +   ++  ++V++MI+QGF +   TF  LI T  
Sbjct: 180 FMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCG 239

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIP---AVSKAGMIDEAFRLLHNLVEDGHKP 225
           ++G     VE +             +Y  ++     + +  +++  ++ +  L+ED + P
Sbjct: 240 EAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQM--LLED-YSP 296

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  ++   +R G+ D       E+   G  P+   + +L+ + G+G + + A + L
Sbjct: 297 DILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLL 356

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             M E+G  P    F  + DGL   G  D
Sbjct: 357 NHMKEVGFDPSVLHFTTLIDGLSRAGNLD 385


>gi|110289270|gb|ABG66143.1| expressed protein [Oryza sativa Japonica Group]
 gi|125575153|gb|EAZ16437.1| hypothetical protein OsJ_31906 [Oryza sativa Japonica Group]
          Length = 829

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 4/268 (1%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + +  +V +A+ V +K ++ N Q  V  Y+SLL  L   ++   A  L   M   G  P 
Sbjct: 179 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGL---RMTDVALELFEEMESCGVSPS 235

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           + +++I++N  C   K+ EA  FLQE   +G F P     ++L+  L N G+++SAK  +
Sbjct: 236 EYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFL 295

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
             M+K G V D  TF++LI  +CK G +E  ++++  V K G+  ++ TY  LI      
Sbjct: 296 CLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLL 355

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G+  E  +++  +   G +P    Y  +I G    G  ++      ++  +G   N   Y
Sbjct: 356 GLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTY 415

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGL 293
           ++L+    + G F E  N L E+  +GL
Sbjct: 416 SVLLNALFKKGMFCEIDNLLGEIYNIGL 443



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 1/243 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCE 64
           E M+   +S S  + S+II    K   V  A+    +       +   + +N L+ ALC 
Sbjct: 225 EEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCN 284

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A + +  M++ G VPD+ T++ L++  C  G M EA +  + ++ +G    +  
Sbjct: 285 WGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVT 344

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G  +   +++  M  QG   DL T+  LI   C+SG+VE  +++   V 
Sbjct: 345 YNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVL 404

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  ++ TY +L+ A+ K GM  E   LL  +   G       Y+ +I G  + G+ +
Sbjct: 405 DQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIE 464

Query: 245 DAF 247
            A 
Sbjct: 465 KAL 467



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ + K G + NAV ++++ T       ++  NSLL+  C++     A +  R +  
Sbjct: 522 NVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQL 581

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G +P   TY  L++A   +G++        EM  K          ++V+GL      + 
Sbjct: 582 SGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDE 641

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++  M  +G   D  T+N+LI+  C+S  V+    ++  +   GL     TY +LI 
Sbjct: 642 AINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLIN 701

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +   G + +A  LL +L E+G K     Y  +IK    +G   +A     ++   G   
Sbjct: 702 VLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEA 761

Query: 261 NRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCF 300
           +   ++  I  +C R  +F + A   V  M  +G+ P ++ +
Sbjct: 762 SIEDFSAAINRLCKR--QFAKEAFMFVPIMLSVGIYPDTQIY 801



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 127/303 (41%), Gaps = 36/303 (11%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K I++M+   +     T +++I    + G V+  ++V         Q  ++ Y+ LL AL
Sbjct: 363 KIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL 422

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR------------------ 104
            +  +F     L+  +   G   D   Y+IL++ +C  G++                   
Sbjct: 423 FKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPT 482

Query: 105 ------------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                             EA+ +L+ ++ K     V   ++++ G    G + +A ++ +
Sbjct: 483 SLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVRLYD 542

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           ++   G    + T NSL+   CK G+++     + ++   GL     TY  L+ A+S+AG
Sbjct: 543 QITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAG 602

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            ++    L   +V    K     Y+ I+KG+ ++ +FD+A     +M  KG   +   Y 
Sbjct: 603 EVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYN 662

Query: 267 MLI 269
            LI
Sbjct: 663 TLI 665



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 126/286 (44%), Gaps = 3/286 (1%)

Query: 11  YNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKL 67
           YN+ +    +  S++I  + K G ++ A++V N  C++       L + S+L  LC+  L
Sbjct: 439 YNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGL 498

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  + RK    D   Y ++++ +   G +  A     +++  G +P +   + 
Sbjct: 499 LVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNS 558

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L+ A+     +   G +    T+ +L++ + ++GEV   + ++  +    
Sbjct: 559 LLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKR 618

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + A+  TY +++  + K    DEA  +L ++   G    P  Y  +I+G         AF
Sbjct: 619 IKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAF 678

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
                M  +G  P    Y +LI +    G+ ++A   L  + E G+
Sbjct: 679 HIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGI 724



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 6/207 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M    +  +  T S+I++   K    D A+ V     +       + YN+L+ 
Sbjct: 607 MLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQ 666

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             CE +    A+ +   M+ +G VP   TY +L+N  C  GK+ +A+  L+ + + G   
Sbjct: 667 GFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKL 726

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  L++     G   +A  +V K++  GF   +E F++ I  +CK    +F  E +
Sbjct: 727 RKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAAINRLCKR---QFAKEAF 783

Query: 181 YSV---CKLGLCADVSTYKILIPAVSK 204
             V     +G+  D   Y +L  A+ K
Sbjct: 784 MFVPIMLSVGIYPDTQIYCVLGRALQK 810



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 94/225 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   + G V+  + +F++  A   +   + Y+ ++  LC+   F  A  +++ M
Sbjct: 590 TYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDM 649

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D  TY  L+  +C S  ++ A      M  +G  P     +LL+  L   G +
Sbjct: 650 DSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKV 709

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ ++  + + G  L    + +LI+  C  G     V +   +   G  A +  +   
Sbjct: 710 IQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAA 769

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           I  + K     EAF  +  ++  G  P   +Y  + + + +  + 
Sbjct: 770 INRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSEL 814


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + II+ +   G   +A+ + +      C+     Y  L+   C++     A+ L   M
Sbjct: 462 TYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P++ TY  L++ +C   K+  A   L+ M   G  P V+  ++L+ GL      
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+++   MI++G   ++ T+ ++I+ +CK+G     +EM+  + + G   ++ TY  L
Sbjct: 582 SGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSL 641

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A+ + G ++EA  L   L   G  P    Y  +I+     G+ + AF F   M   G 
Sbjct: 642 IRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGC 701

Query: 259 PPNRPVYTMLI 269
            P    Y +LI
Sbjct: 702 QPTLWTYGVLI 712



 Score =  112 bits (280), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 145/325 (44%), Gaps = 6/325 (1%)

Query: 7   LMKPYNLSVSPQTL---SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           + K +   +SP T    S+I+    KH L D+A++VFN+     C+   + Y++L+  LC
Sbjct: 238 MKKVFESEMSPDTFTYTSMILGHCRKHDL-DSALQVFNQMAKEGCEPNTVTYSTLINGLC 296

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
           +    + A+ LIR MI  G +P   T    + A C  G   +A     +M +KG  P V 
Sbjct: 297 DSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVY 356

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
               L+ GL  +G L+ A  + ++M + G   +  T+N+LI  + ++  +++   +   +
Sbjct: 357 TYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
            + G   ++ TY  +I      G   +A  +++N+++ GH      Y  IIKG    G  
Sbjct: 417 GRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNT 476

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303
             A      M+  G  P+   YT LI    +  +   A     EM + GL P    +  +
Sbjct: 477 TSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTAL 536

Query: 304 TDGLKNCGKHDLAEKIELLEVSLRS 328
            DG   C    L     LLE   RS
Sbjct: 537 IDGY--CKDEKLDTATSLLEHMKRS 559



 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 123/286 (43%)

Query: 31  GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90
           G  ++A  +F       C+  V  Y +L+  LC   L   A  L  RM R G  P+  TY
Sbjct: 334 GCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTY 393

Query: 91  AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150
             L+N    + +++ A   L  M   G +P +   + +++G    G  + A  ++N M++
Sbjct: 394 NALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQ 453

Query: 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210
           +G   +L T+N++I+  C SG     + +   +   G   D  +Y  LI    K   ++ 
Sbjct: 454 RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMES 513

Query: 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
           AF L + +V+DG  P    Y  +I G  +  + D A      MK  G  PN   Y +LI 
Sbjct: 514 AFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIH 573

Query: 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
              +   F  A      M E G+ P    +  + DGL   G   LA
Sbjct: 574 GLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619



 Score =  101 bits (252), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 114/260 (43%)

Query: 36  AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95
           A  V N      C   ++ YN ++   C +     A  ++  M+++G   +  TY  ++ 
Sbjct: 409 AFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIK 468

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
            +C SG    A   L  M D G  P       L+ G      +ESA  + N+M+  G   
Sbjct: 469 GYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCP 528

Query: 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +  T+ +LI+  CK  +++    +   + + G   +V TY +LI  ++K      A  L 
Sbjct: 529 NEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELC 588

Query: 216 HNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275
             ++E+G  P    Y  +I G+ + G    A   F++M  +G  PN   Y+ LI   G+ 
Sbjct: 589 KVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQE 648

Query: 276 GRFVEAANYLVEMTEMGLTP 295
           G+  EA N   E+   GL P
Sbjct: 649 GKVEEAENLFAELERHGLIP 668



 Score = 96.7 bits (239), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 16/304 (5%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E++K Y +   P+   L++    + G   N V                 YN+++   C+ 
Sbjct: 430 EMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT----------------YNTIIKGYCDS 473

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                A  ++  M   G  PD+ +Y  L+  +C   KM  A     EM D G  P     
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTY 533

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G      L++A  ++  M + G   +++T+N LI  + K        E+   + +
Sbjct: 534 TALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE 593

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  +V TY  +I  + K G    A  + + ++E G  P    Y+ +I+ + + G+ ++
Sbjct: 594 EGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEE 653

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305
           A   F+E++  G  P+   Y  +I      G+   A N+L  M + G  P    + ++  
Sbjct: 654 AENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIK 713

Query: 306 GLKN 309
           GLKN
Sbjct: 714 GLKN 717



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 119/283 (42%), Gaps = 2/283 (0%)

Query: 15  VSPQTL--SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           V P  L  + +I    K G V +A  +  K            Y S++   C       A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            +  +M ++G  P+  TY+ L+N  C SG++ EA + ++EM   G  P        +  L
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIAL 330

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
            + G  E A ++   M  +G   ++ T+ +LI  +C SG ++  + +++ + + G+  + 
Sbjct: 331 CDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT 390

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
            TY  LI  + +   I  AF +L+ +  +G  P    Y  +IKG    G    A    + 
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
           M  +GH  N   Y  +I      G    A   L  M + G  P
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 106/249 (42%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           S ++    + G+    ++ +++  +   Q  +L+YN+++ ALC+      A  +++++  
Sbjct: 184 SALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFE 243

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
               PD  TY  ++   C    +  A +   +M+ +G  P       L+ GL ++G +  
Sbjct: 244 SEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++ +MI  G +    T    I  +C  G  E    ++  +   G   +V TY  LI 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +  +G++  A  L H +  DG  P    Y  +I  +    +   AF   + M   G  P
Sbjct: 364 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 261 NRPVYTMLI 269
           N   Y  +I
Sbjct: 424 NIVTYNEMI 432



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 104/241 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           Y++LL  L  + +         RM+ +G  P+   Y  ++NA C  G + +A+  ++++ 
Sbjct: 183 YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVF 242

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
           +   +P       ++ G      L+SA Q+ N+M K+G   +  T+++LI  +C SG V 
Sbjct: 243 ESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVN 302

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              ++   +   G+     T    I A+   G  ++A+RL  ++   G +P    Y  +I
Sbjct: 303 EAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALI 362

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G+   G    A   F  M   G  PN   Y  LI +     R   A   L  M   G +
Sbjct: 363 SGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCS 422

Query: 295 P 295
           P
Sbjct: 423 P 423



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 24/282 (8%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K+G    A+E+FNK     C   +L Y+SL+ AL +      A  L   +
Sbjct: 602 TYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAEL 661

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA--- 135
            R G +PD+ TY  ++ A+  SGK+  A  FL  M   G  P +    +L++GL N    
Sbjct: 662 ERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLL 721

Query: 136 -----------------GYLESAKQMVNKMIKQGFVLD----LETFNSLIETICKSGEVE 174
                            GY  + +  V+ M  +   LD    ++  N+L+  +  +G   
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
              E+  S+   GLC D   Y  L+ ++ +   +D A  +  ++   G +   + Y  +I
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG 276
             + +  +  +A   F  M ++   P+  V  +LI    R G
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 3/237 (1%)

Query: 73  ALIRRMIRKGFVPDKRTYAI-LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131
           AL RR++            I L+ +  S   M     FL  +S  G    +     L+  
Sbjct: 130 ALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIH 189

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
           L   G   +     ++M+ +G   +L  +N++I  +CK G V     +   V +  +  D
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPD 249

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
             TY  +I    +   +D A ++ + + ++G +P    Y+ +I G+   G+ ++AF    
Sbjct: 250 TFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIR 309

Query: 252 EMKIKGHPPNRPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           EM + G  P     T  +I +C  G  + +A    V+M   G  P    +  +  GL
Sbjct: 310 EMILHGILPTAHTCTGPIIALCDMGC-YEDAWRLFVDMKNKGCEPNVYTYTALISGL 365



 Score = 37.7 bits (86), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 40/83 (48%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YNSLL +L  V+    A  + + M  +G       Y  L+ A C   + +EA+   + M 
Sbjct: 802 YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENML 861

Query: 115 DKGFNPPVRGRDLLVQGLLNAGY 137
            + +NP    + +L+ GLL  GY
Sbjct: 862 MRTWNPDDVVQAVLIDGLLRDGY 884


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 140/301 (46%), Gaps = 3/301 (0%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           ++II   G+ GL++   E+F++  +    + V  Y +L+ A      +  +  L+ RM R
Sbjct: 152 TIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKR 211

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQ--EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +   P+  TY  ++NA C+ G +          EM  +G  P +   + L+      G  
Sbjct: 212 ERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLG 270

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           + A+ +   MI+ G V ++ T++ ++ET  K G++E    +   +   G   D+S+Y +L
Sbjct: 271 DEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVL 330

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A +K G I EA  +   +   G  P  S Y+ ++    + G++DD    F +MK    
Sbjct: 331 IEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSA 390

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P+   Y +LI + G GG F E      ++ +  + P    ++ +       G H+ A+K
Sbjct: 391 EPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKK 450

Query: 319 I 319
           I
Sbjct: 451 I 451



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 134/299 (44%), Gaps = 1/299 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRR 77
           + + +I  +G++G  + ++E+  +         +L YN+++ A     L + G   L   
Sbjct: 185 SYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAE 244

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  PD  TY  L++A  + G   EA+   + M + G  P +     +V+     G 
Sbjct: 245 MRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK 304

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           LE    ++ +M  +G++ D+ ++N LIE   K G ++  ++++  +   G   + STY I
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           L+    K G  D+   L   + E   +P  + Y  +I+     G F +    F ++  + 
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             PN   Y  L+  CG+GG   +A   L  M   G+ P S+ +  + +       +D A
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEA 483



 Score = 97.8 bits (242), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 36/350 (10%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63
           +E MK   +S +  T + +I    +  L  +  + +F +      Q  ++ YN+LL A  
Sbjct: 206 LERMKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACA 265

Query: 64  EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123
              L   A  + + MI  G VP+  TY+ +V  +   GK+ +    L+EM  +G+ P + 
Sbjct: 266 ARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDIS 325

Query: 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183
             ++L++     G ++ A  +  +M   G V +  T++ L+    K G  +   E++  +
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQM 385

Query: 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV------------------------ 219
            +     D +TY ILI    + G   E   L H+LV                        
Sbjct: 386 KESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLH 445

Query: 220 EDGHK-----------PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           ED  K           P    Y+ +I+   +   +D+A   F+ M   G       Y  L
Sbjct: 446 EDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSL 505

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
           I    RGG + E    L  M E G++  ++ F  + +G +  G+++ A K
Sbjct: 506 IHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555



 Score = 91.7 bits (226), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 119/273 (43%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T S I+E FGK G ++    +  +  +      +  YN L+ A  ++     A  + ++M
Sbjct: 291 TYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQM 350

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
              G VP+  TY+IL+N +   G+  + +E   +M +    P     ++L++     GY 
Sbjct: 351 QAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYF 410

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +    + + ++ +    ++ET+  L+    K G  E   ++ + +   G+      Y  L
Sbjct: 411 KEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGL 470

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I A  +A + DEA    + + E G K     Y  +I    R G + +     S M+  G 
Sbjct: 471 IEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGI 530

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291
             N   ++ +I    + G++ EA    VEM +M
Sbjct: 531 SRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKM 563



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 138/327 (42%), Gaps = 43/327 (13%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIR-- 76
           + +++IE   K G +  A++VF +  A  C      Y+ LL    +    HG Y  +R  
Sbjct: 326 SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGK----HGRYDDVREL 381

Query: 77  --RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134
             +M      PD  TY IL+  +   G  +E      ++ D+  +P +   + LV     
Sbjct: 382 FLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGK 441

Query: 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194
            G  E AK+++  M  +G V   + ++ LIE   ++   +  +  + ++ ++G  + + T
Sbjct: 442 GGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDT 501

Query: 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA-------- 246
           Y  LI   ++ G+  E   +L  + E G       ++ II+G  + GQ+++A        
Sbjct: 502 YNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEME 561

Query: 247 -----------------FCF----------FSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
                            +CF          F E+K  G  P+   Y M++ +  + GR+ 
Sbjct: 562 KMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWD 621

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDG 306
           +A+  L EM +  ++ I +    +  G
Sbjct: 622 DASELLDEMIKTRVSSIHQVIGQMIKG 648



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 110/232 (47%), Gaps = 3/232 (1%)

Query: 85  PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144
           P++  Y I+++     G + +  E   EM+ +G    V     L+      G  E++ ++
Sbjct: 146 PNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLEL 205

Query: 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEF--CVEMYYSVCKLGLCADVSTYKILIPAV 202
           + +M ++    ++ T+N++I   C  G++++   + ++  +   G+  D+ TY  L+ A 
Sbjct: 206 LERMKRERVSPNILTYNTVINA-CARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSAC 264

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262
           +  G+ DEA  +   ++E G  P  + Y+ I++   + G+ +       EM+ +G+ P+ 
Sbjct: 265 AARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDI 324

Query: 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             Y +LI    + G   EA +   +M   G  P +  + ++ +     G++D
Sbjct: 325 SSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYD 376



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 36/324 (11%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK  +      T +++I  FG+ G     V +F+     N    +  Y  L+FA  +  L
Sbjct: 385 MKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGL 444

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  ++  M  KG VP  + Y+ L+ A+  +    EA      M++ G    +   + 
Sbjct: 445 HEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNS 504

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+      G  +  + ++++M + G   + ++F+ +IE   +SG+ E  ++ +  + K+ 
Sbjct: 505 LIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMR 564

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
              D  T + ++     AG++DE+      +   G  P    Y  ++    + G++DDA 
Sbjct: 565 CELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAVYAKNGRWDDAS 624

Query: 248 CFFSEM--------------KIKGHPPNRPVYTMLITM--------CGRGGRFV------ 279
               EM               IKG   +   + M+  +        CG G RF       
Sbjct: 625 ELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGFGMRFYNTLLEA 684

Query: 280 --------EAANYLVEMTEMGLTP 295
                    AA  L E T+ GL P
Sbjct: 685 LWWLGQKGRAARVLTEATKRGLFP 708


>gi|225470179|ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 137/292 (46%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           MW+ ++ M      V+ +T  ++I   G+ GL   AVE F K   FN +     YN++L 
Sbjct: 208 MWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILH 267

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
            L  +K +     + ++M+ + + PD  TY I++      GK+ +    L+E+   GF+P
Sbjct: 268 CLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSP 327

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                ++L+  L       +A  ++N M + GF   +  F +LI+ + ++G ++ C   +
Sbjct: 328 DFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFF 387

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             + KLG   DV  Y ++I     AG ++ A  L   +   G  P    Y  +I+G+   
Sbjct: 388 DEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMA 447

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            +F++A     EM+ +G  PN  VY  L+      G+  EA   +  M + G
Sbjct: 448 EKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAGKLKEAHEVIRHMVDKG 499



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 122/308 (39%), Gaps = 35/308 (11%)

Query: 47  NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106
           N +  V  Y+ ++    E   F   + L+  MI +GF    RT+ IL+     +G  R A
Sbjct: 184 NYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCGEAGLARRA 243

Query: 107 QE-----------------------------------FLQEMSDKGFNPPVRGRDLLVQG 131
            E                                     Q+M  + ++P +   ++++  
Sbjct: 244 VERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLEDYSPDILTYNIVMCT 303

Query: 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191
               G L+   +++ ++   GF  D  TFN L+  + K  +    +++   + ++G    
Sbjct: 304 KYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLLNHMKEVGFDPS 363

Query: 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251
           V  +  LI  +S+AG +D        +++ G  P    Y  +I G    G+ + A   F 
Sbjct: 364 VLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITGYIVAGELEMAQGLFE 423

Query: 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311
           EM +KG  PN   Y  +I       +F EA + L EM   G  P    ++ +   L+N G
Sbjct: 424 EMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPNFLVYNTLVGNLRNAG 483

Query: 312 KHDLAEKI 319
           K   A ++
Sbjct: 484 KLKEAHEV 491



 Score = 55.5 bits (132), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 6/209 (2%)

Query: 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168
           F+     + +   V    L+++    +   ++  ++V++MI+QGF +   TF  LI T  
Sbjct: 176 FMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQILICTCG 235

Query: 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIP---AVSKAGMIDEAFRLLHNLVEDGHKP 225
           ++G     VE +             +Y  ++     + +  +++  ++ +  L+ED + P
Sbjct: 236 EAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQM--LLED-YSP 292

Query: 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285
               Y  ++   +R G+ D       E+   G  P+   + +L+ + G+G + + A + L
Sbjct: 293 DILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAALDLL 352

Query: 286 VEMTEMGLTPISRCFDLVTDGLKNCGKHD 314
             M E+G  P    F  + DGL   G  D
Sbjct: 353 NHMKEVGFDPSVLHFTTLIDGLSRAGNLD 381


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 130/272 (47%), Gaps = 3/272 (1%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           S    S +I+E  K  LV+ A  +  K         V  YN+L+  LC+ + F  A  L 
Sbjct: 302 SEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLF 361

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M  +G  P++ TYAIL++A C  G + +A     +M DKG    V   + L+ G    
Sbjct: 362 KEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQ 421

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A+ +++ M+K+G      +++ LI  +C++G++   +E++  + + G+  +  T+
Sbjct: 422 GSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTF 481

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K   +DEA RL   +++    P    +  +I+G    G    AF  + +M  
Sbjct: 482 TALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVE 541

Query: 256 KGHPPNRPVYTMLIT-MCGRGGRFVEAANYLV 286
            G  P+   Y  LI+ +C   G  V  AN  V
Sbjct: 542 MGLKPDNYTYRSLISGLCLTSG--VSKANEFV 571



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 122/278 (43%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K+  V  AVEV N           + Y +L++  C ++    A  +   MIR GFVP + 
Sbjct: 245 KNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEA 304

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
             + +++       + EA     ++ D G  P V   + L+  L      + A ++  +M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G   +  T+  LI  +CK G +E  + ++  +   G+   V  Y  LI    K G +
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSL 424

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           D A  LL  +V++G  P  + Y+P+I G+ R G    A     EM  +G   N   +T L
Sbjct: 425 DRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTAL 484

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306
           I    +  +  EAA    +M +  + P    F+++ +G
Sbjct: 485 INGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEG 522



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 133/309 (43%), Gaps = 2/309 (0%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           ++V+  T S I+    K      A ++F+K           +Y + + A CE +   GA 
Sbjct: 159 ITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGAR 218

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+ RM  +G       Y +L+   C + +++EA E    M + G          LV G 
Sbjct: 219 GLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGF 278

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
                LE A ++ + MI+ GFV      + +I+ + K   VE    +   +  LG+  +V
Sbjct: 279 CRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNV 338

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  LI  + K    D+A RL   +   G +P    YA +I  + +RG  +DA C F +
Sbjct: 339 FAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDK 398

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           M+ KG       Y  LI    + G    A   L  M + GLTP +  +  +  GL  C  
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL--CRN 456

Query: 313 HDLAEKIEL 321
            DL+  +EL
Sbjct: 457 GDLSSAMEL 465



 Score = 95.5 bits (236), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 1/222 (0%)

Query: 74  LIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133
           L R M  +G  PD   Y  +++A      M +A     +M   G++P      +L+  L 
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLC 699

Query: 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS 193
            +GYL SA+ +  +M+    + +  T+N  ++     G++E   +++ ++ + G  A + 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQ-GHLASIV 758

Query: 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253
           ++ ILI  + KAG I EA  L+  + E G  P    Y+ II  + + G  + AF  ++EM
Sbjct: 759 SFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818

Query: 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
             KG  P+   Y + I  C   G   +A      M   G+ P
Sbjct: 819 LYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQP 860



 Score = 94.4 bits (233), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 114/265 (43%)

Query: 55  YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114
           YN L++ LC+      A  +   M+  G   D+ TY  LV  +C   ++  A     +M 
Sbjct: 236 YNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMI 295

Query: 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174
             GF P       ++  L     +E A  +  K+   G V ++  +N+LI+ +CK+   +
Sbjct: 296 RLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFD 355

Query: 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234
               ++  +   GL  +  TY ILI A+ K GMI++A  L   + + G K     Y  +I
Sbjct: 356 DADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLI 415

Query: 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294
            G  ++G  D A    S M  +G  P    Y+ LI    R G    A     EM E G+ 
Sbjct: 416 NGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIA 475

Query: 295 PISRCFDLVTDGLKNCGKHDLAEKI 319
             +  F  + +G     K D A ++
Sbjct: 476 WNNYTFTALINGFCKDKKMDEAARL 500



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 1/218 (0%)

Query: 53  LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112
           + Y  ++ AL + +    A     +M+  G+ P+  T+ +L+N  C SG +  A+   +E
Sbjct: 654 IFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKE 713

Query: 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172
           M      P     +  +      G +E AK + + M+ QG +  + +FN LI+ +CK+G+
Sbjct: 714 MLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGK 772

Query: 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232
           ++  +++   + + G   D  +Y  +I  + K G I++AF L + ++  G KP    Y  
Sbjct: 773 IQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNI 832

Query: 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270
            I+     G+ D A   ++ M   G  PN   Y  L++
Sbjct: 833 FIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLS 870



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 107/227 (47%), Gaps = 11/227 (4%)

Query: 32  LVDNAVEVFNKCTAFNCQQCVLL---------YNSLLFALCEVKLFHGAYALIRRMIRKG 82
           ++D   +  N   A NC   +++         +  L+  LC+      A  L + M+   
Sbjct: 659 MIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 83  FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142
            +P+K TY   ++ + + G M +A++    M  +G    +   ++L++GL  AG ++ A 
Sbjct: 719 VLPNKFTYNCFLDYFATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202
            ++ K+ + GF  D  +++++I  +CK G++    E++  +   GL  DV  Y I I   
Sbjct: 778 DLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249
           +  G  D+A  +  N++  G +P    Y  ++ G+     +D + CF
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFS-CF 883



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 137/359 (38%), Gaps = 37/359 (10%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           M+   + V+    + +I  + K G +D A  + +             Y+ L+  LC    
Sbjct: 399 MRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD 458

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A  L R M  +G   +  T+  L+N +C   KM EA     +M D    P     ++
Sbjct: 459 LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNV 518

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV----EFCVEMYYSV 183
           +++G    G +  A Q+ ++M++ G   D  T+ SLI  +C +  V    EF  ++  S 
Sbjct: 519 MIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSY 578

Query: 184 CKL-------------------------------GLCADVSTYKILIPAVSKAGMIDEAF 212
             L                               G+  D+ ++ I++ A  K    +++ 
Sbjct: 579 AVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSC 638

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            L   + E G KP    Y  +I  + +      A   + +M I G+ PN   +T+LI   
Sbjct: 639 VLFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNL 698

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE--LLEVSLRSV 329
            + G    A     EM    + P    ++   D     G  + A+ +   +L+  L S+
Sbjct: 699 CKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASI 757



 Score = 41.6 bits (96), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I+   K G +  A+++  K T        + Y++++  LC++   + A+ L   M
Sbjct: 759 SFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEM 818

Query: 79  IRKGFVPDKRTYAILVNAWCS-SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           + KG  PD   Y I +  WC+  G+  +A      M   G  P       L+ G+
Sbjct: 819 LYKGLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGI 872


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 150/320 (46%), Gaps = 5/320 (1%)

Query: 4   TIELMKPY---NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLL 59
           TIEL+K       ++S Q L+  +    K G VD A+E   +   +F+ +  V  Y+ L+
Sbjct: 35  TIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRASVSTYSILV 94

Query: 60  FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119
            AL   K  + A  L+ +M   G   DK TY++++++ C SG + +A+  ++ M  +   
Sbjct: 95  AALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCV 154

Query: 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179
           P  R  D +++ L   G ++ A + + K         + T+NSL+    K+  ++  +++
Sbjct: 155 PDARIYDPVIEELSKTGRVDEAVE-IAKEADAKHCTSVVTYNSLVLGFLKARRLKRGIKV 213

Query: 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +  + + G   D+ TY IL   +S+ G+   A++LL  + +DG  P    +  +I G+  
Sbjct: 214 FTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVE 273

Query: 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRC 299
             ++  A     EM  +G  PN   YT+L+    R  R  E       + +  L P    
Sbjct: 274 DNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYT 333

Query: 300 FDLVTDGLKNCGKHDLAEKI 319
           ++ V   L   G+ D A ++
Sbjct: 334 YNTVMSALCKAGRLDQAHRL 353



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 126/285 (44%), Gaps = 2/285 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M   N     +    +IEE  K G VD AVE+  +  A +C   V+ YNSL+    +
Sbjct: 145 VERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCTS-VVTYNSLVLGFLK 203

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
            +       +  RM R G  PD  TY IL       G  R A + L  M+  G  P V  
Sbjct: 204 ARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVT 263

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ GL+       A  ++ +M+ +G   +  T+  L++ + ++   + CVE++  + 
Sbjct: 264 FNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRLL 323

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLH-NLVEDGHKPFPSLYAPIIKGMFRRGQF 243
              L  +V TY  ++ A+ KAG +D+A RL    L  D   P    Y  +I G+  + + 
Sbjct: 324 DRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMEL 383

Query: 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288
           + A      M  +G  P+   Y  ++    + GR  EA   L  M
Sbjct: 384 ERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFELLERM 428



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 1/290 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E    ++L  S  T S+++         ++A+E+  +  +   +     Y+ ++ +LC+ 
Sbjct: 76  EAKNSFSLRASVSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKS 135

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
            +   A  L+ RMI +  VPD R Y  ++     +G++ EA E  +E +D      V   
Sbjct: 136 GMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKE-ADAKHCTSVVTY 194

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
           + LV G L A  L+   ++  +M + G   D+ T+N L E + + G   F  ++   + +
Sbjct: 195 NSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQ 254

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
            G+  DV T+  LI  + +      A  L+  +V  G  P    Y  ++K + R  + D+
Sbjct: 255 DGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDE 314

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
               F  +  +   PN   Y  +++   + GR  +A      M     TP
Sbjct: 315 CVELFQRLLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTP 364



 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 2/223 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++ E   +HGL   A ++  +         V+ +NSL+  L E   +H A  LI+ M
Sbjct: 228 TYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEM 287

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +G  P+  TY IL+     + +  E  E  Q + D+   P V   + ++  L  AG L
Sbjct: 288 VSRGCDPNAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGRL 347

Query: 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           + A ++   M+       +  T+ +LI  +C   E+E  V +  ++ K G   DV+ Y  
Sbjct: 348 DQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGT 407

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKP-FPSLYAPIIKGMFR 239
           ++ A  K G IDEAF LL  +   G K  F +L   + K   R
Sbjct: 408 IVAAFCKQGRIDEAFELLERMPFAGDKVMFRTLVRALCKLQLR 450


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 133/300 (44%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +++   T S+++    K G V  A EV             ++YN+L+   C+     GA+
Sbjct: 199 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 258

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +   +M  +   PD  TY  L+N  C + ++  AQ+ L EM D G NP V   + L+   
Sbjct: 259 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 318

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G LE    ++++M + G   ++ ++ S++   CK+G++   V +   +    +  + 
Sbjct: 319 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 378

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  +I A  + G  D+AF L+  +  +G  P    Y  +IKG+  + Q  +A    + 
Sbjct: 379 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS 438

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +      P+   Y  LI+ C   G   +A +    M + G+    R +  +  GL   G+
Sbjct: 439 LSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGR 498



 Score = 98.6 bits (244), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 129/305 (42%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    + G   +AVEVF++ T        + YN+++    +       + L  +M
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 124

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY +L++  C +G+M E    L EM+ +   P      +L  GL   G  
Sbjct: 125 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 184

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++   +  K +K G  +   T + L+  +CK G+V    E+  S+   GL      Y  L
Sbjct: 185 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 244

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G ++ AF     +     KP    Y  +I G+ +  +  +A     EM+  G 
Sbjct: 245 INGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGV 304

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    +  LI   GR G+  +    L EM E GL P    +  + +    C    + E 
Sbjct: 305 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF--CKNGKIPEA 362

Query: 319 IELLE 323
           + +L+
Sbjct: 363 VAILD 367



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 125/298 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++    + ++      +   + YN LL  LC         AL+  M
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 159

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +  VPD  TY+IL +    +G  +       +    G         +L+ GL   G +
Sbjct: 160 ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKV 219

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++++  ++  G V     +N+LI   C++GE+E     +  +    +  D  TY  L
Sbjct: 220 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 279

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  I  A  LL  + ++G  P    +  +I    R GQ +  F   SEM+  G 
Sbjct: 280 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 339

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y  ++    + G+  EA   L +M    + P ++ ++ + D     G +D A
Sbjct: 340 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 397



 Score = 93.2 bits (230), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 7   LMKPYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           LM+  +  V+P  +T + +I+ +G+ G ++    V ++      +  V+ Y S++ A C+
Sbjct: 296 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 355

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A A++  M  K  +P+ + Y  +++A+   G   +A   +++M   G +P +  
Sbjct: 356 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 415

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +LL++GL N   +  A++++N +     + D  ++N+LI   C  G ++  +++   + 
Sbjct: 416 YNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMH 475

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           K G+ + V TY  LI  +  AG ++E   L   ++++   P  +++  +++   + G 
Sbjct: 476 KYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 533



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 123/289 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           + T   MK  ++     T + +I    K   + NA ++  +         V  +N+L+ A
Sbjct: 258 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 317

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                     + ++  M   G  P+  +Y  +VNA+C +GK+ EA   L +M  K   P 
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            +  + ++   +  G  + A  +V KM   G    + T+N LI+ +C   ++    E+  
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 437

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S+    L  D  +Y  LI A    G ID+A  L   + + G K     Y  +I G+   G
Sbjct: 438 SLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAG 497

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           + ++    + +M      P+  ++ +++    + G  ++A +   EM +
Sbjct: 498 RLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 546



 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 39/322 (12%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP- 85
            G+H  V  A  +     A   +     +N  + A         A  ++RRM R G  P 
Sbjct: 5   LGRHADVRRAFGILASAGA---RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPP 61

Query: 86  DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           +  +Y +++     +G+  +A E   EM+++   P     + ++ G +  G LE+  ++ 
Sbjct: 62  NAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLR 121

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS-- 203
           ++M+  G   +  T+N L+  +C++G +     +   +    +  D  TY IL   +S  
Sbjct: 122 DQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRN 181

Query: 204 ---------------------------------KAGMIDEAFRLLHNLVEDGHKPFPSLY 230
                                            K G +  A  +L +LV  G  P   +Y
Sbjct: 182 GDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 241

Query: 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
             +I G  + G+ + AF  F +MK +   P+   Y  LI    +  R   A + L+EM +
Sbjct: 242 NTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQD 301

Query: 291 MGLTPISRCFDLVTDGLKNCGK 312
            G+ P    F+ + D     G+
Sbjct: 302 NGVNPTVETFNTLIDAYGRTGQ 323



 Score = 57.8 bits (138), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 1/225 (0%)

Query: 96  AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL 155
           A  S G+  + +     ++  G  P     +  VQ  + AG L  A  M+ +M + G   
Sbjct: 1   ALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPP 60

Query: 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214
            +  ++N +I  + ++G     VE++  + +  +  +  TY  +I    K G ++  FRL
Sbjct: 61  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 120

Query: 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274
              +V  G KP    Y  ++ G+ R G+  +      EM  +   P+   Y++L     R
Sbjct: 121 RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
            G      +   +  + G+T       ++ +GL   GK  +AE++
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 225



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S S  T +L+I+       +  A E+ N  +        + YN+L+ A C 
Sbjct: 401 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 460

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L +RM + G     RTY  L++    +G++ E +   Q+M      P    
Sbjct: 461 RGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI 520

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            +++V+     G    A+ +  +M+++
Sbjct: 521 HNIMVEAYSKYGNEIKAEDLRKEMLQK 547


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 2/321 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           +  + L+     +V+   ++++++   ++G V  A+ +  +    +    ++ YN+L+  
Sbjct: 129 FGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLING 188

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
           LC+ K    A  L+  M   G  P+  T   L++  C  G+M EA E L+ M  KGF+  
Sbjct: 189 LCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDAD 248

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           V     L+ G  N G L+  K++ ++M+ +G   ++ T++ L+  +C+ G+ +    +  
Sbjct: 249 VVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLN 308

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           ++ + G+  DV TY  LI  + K G    A  LL+ +VE G +P    Y  ++ G+ + G
Sbjct: 309 AMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEG 368

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM--TEMGLTPISRC 299
              DAF     M  KG   +   Y  L+      G+  EA      M   E  L P    
Sbjct: 369 LVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFT 428

Query: 300 FDLVTDGLKNCGKHDLAEKIE 320
           F+++  GL   G+   A KI 
Sbjct: 429 FNMLIGGLCKEGRLTKAVKIH 449



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 122/252 (48%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T +++I    K G +  AV++  K         ++ YN LL    +      A  L +++
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQV 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  GFVP+  TY+IL++ +C    +  A+    EM   G NP +   + L+  L   G L
Sbjct: 488 LDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSL 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E AK +  +M       D+ +FN++I+   K+G+ +F  E+   + ++GL  D  T+  L
Sbjct: 548 EQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  +SK G +DEA   L  +V  G  P   +Y  ++KG+  +G   +      +M  KG 
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 259 PPNRPVYTMLIT 270
             +R + + ++T
Sbjct: 668 VLDRKIVSTILT 679



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 143/319 (44%), Gaps = 4/319 (1%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +S +  T S ++    + G    A  V N          V+ Y  L+  LC+      A 
Sbjct: 280 ISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAM 339

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L+  M+ KG  P   TY +L++  C  G + +A + L+ M +KG    V   + L++GL
Sbjct: 340 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 399

Query: 133 LNAGYLESAKQMVNKMIKQGFVL--DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
            + G ++ A ++ N M      L  ++ TFN LI  +CK G +   V+++  + K G C 
Sbjct: 400 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 459

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           ++ TY +L+    KAG I EA  L   +++ G  P    Y+ +I G  +    + A   F
Sbjct: 460 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLF 519

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310
            EM+  G  P    Y  L+    + G   +A +   EM      P    F+ + DG    
Sbjct: 520 CEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKA 579

Query: 311 GKHDLAEKIE--LLEVSLR 327
           G     ++++  ++E+ LR
Sbjct: 580 GDFQFVKELQMKMVEMGLR 598



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 6/295 (2%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC----VLLYNS 57
           +K + +M          T + +++     G VD A+++FN  + F+ + C    V  +N 
Sbjct: 374 FKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFN--SMFDNENCLEPNVFTFNM 431

Query: 58  LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117
           L+  LC+      A  + R+M++KG   +  TY +L+     +GK++EA E  +++ D G
Sbjct: 432 LIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLG 491

Query: 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177
           F P      +L+ G      L  AK +  +M   G    L  +N+L+ ++CK G +E   
Sbjct: 492 FVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAK 551

Query: 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237
            ++  +       D+ ++  +I    KAG       L   +VE G +P    ++ +I  +
Sbjct: 552 SLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINRL 611

Query: 238 FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292
            + G+ D+A      M   G  P+  VY  L+      G   E  N L +M   G
Sbjct: 612 SKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKG 666



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 133/297 (44%)

Query: 11  YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG 70
           +NL  S  T + +++   +      A  V+ + T  +        ++L+    + +    
Sbjct: 68  FNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQL 127

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
            + ++  ++++GF  +     I++   C +G + EA   ++EM  K  +P +   + L+ 
Sbjct: 128 GFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLIN 187

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL  A  L+ A  ++ +M   G   +  T  +L++ +CK G ++  +E+  ++ K G  A
Sbjct: 188 GLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDA 247

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           DV  Y  LI      G +D    L   ++  G       Y+ ++ G+ R GQ+ +A    
Sbjct: 248 DVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVL 307

Query: 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
           + M   G  P+   YT LI    + GR   A + L  M E G  P +  ++++  GL
Sbjct: 308 NAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGL 364



 Score = 61.6 bits (148), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 105/280 (37%), Gaps = 35/280 (12%)

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
           F  A +L    +    +P   T   LV+A   S     A    + M+     P       
Sbjct: 55  FTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSA 114

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L++   +A   +    +V  ++K+GF +++   N +++ +C++G V   + +   + +  
Sbjct: 115 LIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKS 174

Query: 188 LCADVSTYKILIPAVSKA-----------------------------------GMIDEAF 212
           +  D+ +Y  LI  + KA                                   G +DEA 
Sbjct: 175 VSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAM 234

Query: 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272
            LL  + + G      LY  +I G    G  D     F EM  KG   N   Y+ L+   
Sbjct: 235 ELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGL 294

Query: 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
            R G++ EA   L  M E G+ P    +  + DGL   G+
Sbjct: 295 CRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGR 334



 Score = 42.0 bits (97), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 44/220 (20%), Positives = 80/220 (36%)

Query: 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET 159
           + +  EA        D    P     + LV  L  +     A  +  +M     +    +
Sbjct: 52  NSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGS 111

Query: 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219
            ++LIE    + + +    +   V K G   +V    I++  + + G + EA  L+  + 
Sbjct: 112 LSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMG 171

Query: 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279
                P    Y  +I G+ +  +  +A     EM+  G  PN    T L+    + GR  
Sbjct: 172 RKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMD 231

Query: 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319
           EA   L  M + G       +  +  G  N G  D  +++
Sbjct: 232 EAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 271


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 98/206 (47%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V  YN L+   C+      A  L   MI +G  PDK TY  L++  C  G++REAQ+  +
Sbjct: 29  VFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFK 88

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
            M   G  P +    +L+ GL   GYL  A ++   M       DL  +N L++ +CKSG
Sbjct: 89  NMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAMCKSG 148

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA 231
            ++   E++  +   GL  +V  Y  +I  + K G++DEA     N+ EDG  P    Y 
Sbjct: 149 NLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYN 208

Query: 232 PIIKGMFRRGQFDDAFCFFSEMKIKG 257
            II+G  +      A     EM+ +G
Sbjct: 209 VIIRGFLQHKDESRAVHLIGEMRDRG 234



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 101/203 (49%)

Query: 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164
           EA++    M  KG+ P V   ++L+ G   A  ++ AKQ+ N+MI QG   D  T+N+LI
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK 224
             +C+ G +    +++ ++ K G   D+  Y IL+  + K G + +AFRL   +     K
Sbjct: 72  HGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLK 131

Query: 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284
           P   +Y  ++  M + G   DA   FSE+ +KG  PN  +YT +I    + G   EA   
Sbjct: 132 PDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEA 191

Query: 285 LVEMTEMGLTPISRCFDLVTDGL 307
              M E G  P    ++++  G 
Sbjct: 192 FRNMEEDGCPPDEFSYNVIIRGF 214



 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 100/199 (50%)

Query: 71  AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130
           A  L   MI KG+ PD   Y IL+N +C + ++ +A++   EM  +G  P     + L+ 
Sbjct: 13  ARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIH 72

Query: 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190
           GL   G L  A+ +   M K G + DL  ++ L++ +CK G +     ++ ++    L  
Sbjct: 73  GLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKP 132

Query: 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250
           D+  Y IL+ A+ K+G + +A  L   L   G +P   +Y  II G+ + G  D+A   F
Sbjct: 133 DLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAF 192

Query: 251 SEMKIKGHPPNRPVYTMLI 269
             M+  G PP+   Y ++I
Sbjct: 193 RNMEEDGCPPDEFSYNVII 211



 Score = 75.1 bits (183), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 2/180 (1%)

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A+++ + MI +G+  D+  +N LI   CK+  ++   ++Y  +   GL  D  TY  LI 
Sbjct: 13  ARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLIH 72

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            + + G + EA  L  N+ ++G+ P    Y+ ++ G+ ++G    AF  F  M+     P
Sbjct: 73  GLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKP 132

Query: 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320
           +  +Y +L+    + G   +A     E+   GL P  + +  + +GL  C +  L E +E
Sbjct: 133 DLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGL--CKEGLLDEALE 190



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 78/182 (42%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           L+    T + +I    + G +  A ++F           +  Y+ LL  LC+      A+
Sbjct: 60  LTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAF 119

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
            L R M      PD   Y ILV+A C SG +++A+E   E+  KG  P V+    ++ GL
Sbjct: 120 RLFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGL 179

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G L+ A +    M + G   D  ++N +I    +  +    V +   +   G  ADV
Sbjct: 180 CKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIADV 239

Query: 193 ST 194
            T
Sbjct: 240 GT 241


>gi|10140738|gb|AAG13570.1|AC037425_1 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 811

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 133/268 (49%), Gaps = 4/268 (1%)

Query: 27  FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86
           + +  +V +A+ V +K ++ N Q  V  Y+SLL  L   ++   A  L   M   G  P 
Sbjct: 161 YARAQMVHDALYVLSKMSSLNMQISVFTYDSLLHGL---RMTDVALELFEEMESCGVSPS 217

Query: 87  KRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMV 145
           + +++I++N  C   K+ EA  FLQE   +G F P     ++L+  L N G+++SAK  +
Sbjct: 218 EYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCNWGFVQSAKSFL 277

Query: 146 NKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205
             M+K G V D  TF++LI  +CK G +E  ++++  V K G+  ++ TY  LI      
Sbjct: 278 CLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLL 337

Query: 206 GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY 265
           G+  E  +++  +   G +P    Y  +I G    G  ++      ++  +G   N   Y
Sbjct: 338 GLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTY 397

Query: 266 TMLITMCGRGGRFVEAANYLVEMTEMGL 293
           ++L+    + G F E  N L E+  +GL
Sbjct: 398 SVLLNALFKKGMFCEIDNLLGEIYNIGL 425



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 112/243 (46%), Gaps = 1/243 (0%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC-TAFNCQQCVLLYNSLLFALCE 64
           E M+   +S S  + S+II    K   V  A+    +       +   + +N L+ ALC 
Sbjct: 207 EEMESCGVSPSEYSHSIIINGLCKQDKVGEALSFLQEARKEGKFKPLGMTFNILMSALCN 266

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A + +  M++ G VPD+ T++ L++  C  G M EA +  + ++ +G    +  
Sbjct: 267 WGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVT 326

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            + L+ G    G  +   +++  M  QG   DL T+  LI   C+SG+VE  +++   V 
Sbjct: 327 YNSLINGYRLLGLTKEIPKIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVL 386

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             GL  ++ TY +L+ A+ K GM  E   LL  +   G       Y+ +I G  + G+ +
Sbjct: 387 DQGLQLNIVTYSVLLNALFKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIE 446

Query: 245 DAF 247
            A 
Sbjct: 447 KAL 449



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 127/282 (45%), Gaps = 4/282 (1%)

Query: 21  SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80
           +++I+ + K G + NAV ++++ T       ++  NSLL+  C++     A +  R +  
Sbjct: 504 NVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQL 563

Query: 81  KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140
            G +P   TY  L++A   +G++        EM  K          ++V+GL      + 
Sbjct: 564 SGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDE 623

Query: 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200
           A  ++  M  +G   D  T+N+LI+  C+S  V+    ++  +   GL     TY +LI 
Sbjct: 624 AINVLKDMDSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLIN 683

Query: 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260
            +   G + +A  LL +L E+G K     Y  +IK    +G   +A     ++   G   
Sbjct: 684 VLCLKGKVIQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEA 743

Query: 261 NRPVYTMLIT-MCGRGGRFVEAANYLVE-MTEMGLTPISRCF 300
           +   ++  I  +C R  +F + A   V  M  +G+ P ++ +
Sbjct: 744 SIEDFSAAINRLCKR--QFAKEAFMFVPIMLSVGIYPDTQIY 783



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 127/303 (41%), Gaps = 36/303 (11%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           K I++M+   +     T +++I    + G V+  ++V         Q  ++ Y+ LL AL
Sbjct: 345 KIIQMMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNAL 404

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR------------------ 104
            +  +F     L+  +   G   D   Y+IL++ +C  G++                   
Sbjct: 405 FKKGMFCEIDNLLGEIYNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPT 464

Query: 105 ------------------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146
                             EA+ +L+ ++ K     V   ++++ G    G + +A ++ +
Sbjct: 465 SLNHFSILLGLCKKGLLVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVRLYD 524

Query: 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206
           ++   G    + T NSL+   CK G+++     + ++   GL     TY  L+ A+S+AG
Sbjct: 525 QITVAGMHPTIVTCNSLLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAG 584

Query: 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266
            ++    L   +V    K     Y+ I+KG+ ++ +FD+A     +M  KG   +   Y 
Sbjct: 585 EVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYN 644

Query: 267 MLI 269
            LI
Sbjct: 645 TLI 647



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 126/286 (44%), Gaps = 3/286 (1%)

Query: 11  YNLSVSPQTL--SLIIEEFGKHGLVDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKL 67
           YN+ +    +  S++I  + K G ++ A++V N  C++       L + S+L  LC+  L
Sbjct: 421 YNIGLDMDVIAYSILIHGYCKLGEIEKALQVCNAMCSSQRVMPTSLNHFSILLGLCKKGL 480

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              A   +  + RK    D   Y ++++ +   G +  A     +++  G +P +   + 
Sbjct: 481 LVEARWYLENVARKYQPTDVVFYNVVIDGYAKLGDIVNAVRLYDQITVAGMHPTIVTCNS 540

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+ G    G L+ A+     +   G +    T+ +L++ + ++GEV   + ++  +    
Sbjct: 541 LLYGYCKIGDLQLAESYFRAIQLSGLLPTAVTYTTLMDALSEAGEVNTMLSLFDEMVAKR 600

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           + A+  TY +++  + K    DEA  +L ++   G    P  Y  +I+G         AF
Sbjct: 601 IKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQGFCESENVQMAF 660

Query: 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293
                M  +G  P    Y +LI +    G+ ++A   L  + E G+
Sbjct: 661 HIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGI 706



 Score = 64.7 bits (156), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 6/207 (2%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M    + M    +  +  T S+I++   K    D A+ V     +       + YN+L+ 
Sbjct: 589 MLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDMDSKGINADPITYNTLIQ 648

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
             CE +    A+ +   M+ +G VP   TY +L+N  C  GK+ +A+  L+ + + G   
Sbjct: 649 GFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKVIQAEILLESLRENGIKL 708

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
                  L++     G   +A  +V K++  GF   +E F++ I  +CK    +F  E +
Sbjct: 709 RKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAAINRLCKR---QFAKEAF 765

Query: 181 YSV---CKLGLCADVSTYKILIPAVSK 204
             V     +G+  D   Y +L  A+ K
Sbjct: 766 MFVPIMLSVGIYPDTQIYCVLGRALQK 792



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 94/225 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +++   + G V+  + +F++  A   +   + Y+ ++  LC+   F  A  +++ M
Sbjct: 572 TYTTLMDALSEAGEVNTMLSLFDEMVAKRIKANAVTYSVIVKGLCKQLRFDEAINVLKDM 631

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             KG   D  TY  L+  +C S  ++ A      M  +G  P     +LL+  L   G +
Sbjct: 632 DSKGINADPITYNTLIQGFCESENVQMAFHIHDIMLCRGLVPTPVTYNLLINVLCLKGKV 691

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ ++  + + G  L    + +LI+  C  G     V +   +   G  A +  +   
Sbjct: 692 IQAEILLESLRENGIKLRKFAYTTLIKAQCAKGMPINAVLLVGKLLDAGFEASIEDFSAA 751

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243
           I  + K     EAF  +  ++  G  P   +Y  + + + +  + 
Sbjct: 752 INRLCKRQFAKEAFMFVPIMLSVGIYPDTQIYCVLGRALQKNSEL 796


>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
          Length = 375

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 147/298 (49%), Gaps = 1/298 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T ++II+   + G VD A E+ N   + +C+   + YN++L   C ++ +  A  ++  +
Sbjct: 12  TYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIERWVDANEILDEV 71

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           + +   P++ T  + +N  C  G +++   +L++MS  G    V   + ++ GL   G +
Sbjct: 72  VSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNAIIGGLCEQGNV 131

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           +SA ++++ M   G   D+ T+N++++ +C +   E   E+   + +     D ST+  +
Sbjct: 132 DSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFNTI 191

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G+I +A  +   + E G  P  + Y+ II G+ +  + + A    +EM  KG 
Sbjct: 192 ISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELLNEMANKGF 251

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
             ++ +Y +L     +  +  E    + ++ + G++P +  ++ V  GL   GK + A
Sbjct: 252 NTDK-MYLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNYA 308



 Score =  107 bits (267), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 126/249 (50%), Gaps = 1/249 (0%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M  +  + +  T + II    + G VD+A+E+ +   +F C+  ++ YN++L  LC 
Sbjct: 103 LEKMSKHGCTTNVVTYNAIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCS 162

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
              +  A  L+ +M +   + D  T+  +++ WC  G + +A E  ++M +KG NP    
Sbjct: 163 ADRWEDAEELMIKMSQNDRLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTT 222

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
              ++ GL+ A  +E A +++N+M  +GF  D + +  L +++ K  ++E  V++ + + 
Sbjct: 223 YSTIIGGLVKASKMEQALELLNEMANKGFNTD-KMYLVLTKSLNKEDKIEEVVQVVHKLQ 281

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244
             G+      Y  ++  + + G  + A  +L ++V  G  P  S Y  +I+G+F  G   
Sbjct: 282 DSGISPQTVLYNTVLLGLCRNGKTNYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYLK 341

Query: 245 DAFCFFSEM 253
           +A    S +
Sbjct: 342 EARELLSRL 350



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 111/245 (45%), Gaps = 2/245 (0%)

Query: 78  MIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137
           M  +G  P+  TY ++++A C  G + +A+E L  +  +   P     + +++G  +   
Sbjct: 1   MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIER 60

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
              A +++++++ +    +  T N  I T+C+ G ++        + K G   +V TY  
Sbjct: 61  WVDANEILDEVVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNA 120

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           +I  + + G +D A  LL N+   G KP    Y  ++KG+    +++DA     +M    
Sbjct: 121 IIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 180

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
              +   +  +I+   + G  ++A     +M E G  P S  +  +  GL    K + A 
Sbjct: 181 RLRDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQA- 239

Query: 318 KIELL 322
            +ELL
Sbjct: 240 -LELL 243



 Score = 45.1 bits (105), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 22  LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81
           ++ +   K   ++  V+V +K          +LYN++L  LC     + A  ++  M+  
Sbjct: 259 VLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNYAIDVLADMVSC 318

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLV 129
           G +PD+ TY IL+      G ++EA+E L  +  +    N  ++   LL+
Sbjct: 319 GCMPDESTYIILIEGLFYEGYLKEARELLSRLCSRDVLSNSLIKNEALLL 368


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 129/294 (43%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           W+  + M    +  +  T +++   F + G VD   +   +      +  ++ YN+L+  
Sbjct: 234 WQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISC 293

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
            C       A+ L R M R+  +PD  +Y  L+N  C  GK+REA +    M  +G NP 
Sbjct: 294 YCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPD 353

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
           +   + L+ G    G +  ++ ++++MI  G   D  T   LIE   K   +   + +  
Sbjct: 354 IVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVV 413

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
            + + G+      Y  L+ ++ + G    A  LL  + + G+ P   +Y  +I+ + +  
Sbjct: 414 ELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSD 473

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295
              DA    SEM  +   P+   Y  LI    R  R +EA + + EM + G+ P
Sbjct: 474 SIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLP 527



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 137/304 (45%), Gaps = 2/304 (0%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
            P    ++++ + + G++      F K     C   V+  N LL  L ++      + + 
Sbjct: 178 DPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVY 237

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
           + M R G  P+  T+ IL + +C  G + +  +FL+ M ++GF P +   + L+      
Sbjct: 238 KEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRK 297

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G L+ A  +   M ++  + DL ++ +L+  +CK G+V    ++++ +   GL  D+ ++
Sbjct: 298 GRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSF 357

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
             LI    K G + E+  LLH ++  G  P       +I+G  +  +   A     E++ 
Sbjct: 358 NTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELER 417

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
            G P +  +Y  L+      GR   A + L  +++ G  P    ++ + + L  C    +
Sbjct: 418 FGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESL--CKSDSI 475

Query: 316 AEKI 319
           A+ +
Sbjct: 476 ADAL 479



 Score = 78.2 bits (191), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 24/249 (9%)

Query: 82  GFVPDKRTYAILVNAWCSSGKMREAQEFLQEM----SDKGFNPPVRGR------------ 125
           G  P  + Y  LV+    S + +EA +FL E+     D  FN  V               
Sbjct: 120 GLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQTLLFCCQDCNWDP 179

Query: 126 ---DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
              D+LV+  +  G ++       K+++ G V  + + N L+  + K   ++ C ++Y  
Sbjct: 180 VIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKE 239

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + ++G+  +  T+ IL     + G +D+    L  + E+G +P    Y  +I    R+G+
Sbjct: 240 MARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGR 299

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            DDAF  +  M  +   P+   YT L+    + G+  EA      M   GL P     D+
Sbjct: 300 LDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNP-----DI 354

Query: 303 VTDGLKNCG 311
           V+     CG
Sbjct: 355 VSFNTLICG 363



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 93/221 (42%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T  ++IE + K   + +A+ +  +   F       +Y+ L+ ++CE      A +L++R+
Sbjct: 391 TCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRI 450

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            ++G+VP    Y  L+ + C S  + +A     EM  +   P       L+  L      
Sbjct: 451 SQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRS 510

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A+ ++ +M++ G + D +   +L+   CK  ++     +  +  K     D  +Y  L
Sbjct: 511 MEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTL 570

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239
           +    +         L   +++ G  P    +  +I G+++
Sbjct: 571 VKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWK 611



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 76/164 (46%)

Query: 52  VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111
           V +YN L+ +LC+      A  +   M  +   P   TY  L+   C + +  EA+  ++
Sbjct: 459 VEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLME 518

Query: 112 EMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171
           EM   G  P       L+        +  A+ ++    K+  + D E++N+L++T C+  
Sbjct: 519 EMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDA 578

Query: 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215
           +    +E+   + K+G   ++ T++ +I  + KA  +++   LL
Sbjct: 579 DATRLMELQDRMLKVGFAPNIQTFRQMIHGLWKAMAVEKDKLLL 622


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 133/300 (44%)

Query: 13  LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72
           +++   T S+++    K G V  A EV             ++YN+L+   C+     GA+
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 210

Query: 73  ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           +   +M  +   PD  TY  L+N  C + ++  AQ+ L EM D G NP V   + L+   
Sbjct: 211 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
              G LE    ++++M + G   ++ ++ S++   CK+G++   V +   +    +  + 
Sbjct: 271 GRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNA 330

Query: 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252
             Y  +I A  + G  D+AF L+  +  +G  P    Y  +IKG+  + Q  +A    + 
Sbjct: 331 QVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINS 390

Query: 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           +      P+   Y  LI+ C   G   +A +    M + G+    R +  +  GL   G+
Sbjct: 391 LSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGR 450



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 129/305 (42%), Gaps = 2/305 (0%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           + +++I    + G   +AVEVF++ T        + YN+++    +       + L  +M
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQM 76

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G  P+  TY +L++  C +G+M E    L EM+ +   P      +L  GL   G  
Sbjct: 77  VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 136

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           ++   +  K +K G  +   T + L+  +CK G+V    E+  S+   GL      Y  L
Sbjct: 137 KAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTL 196

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I    + G ++ AF     +     KP    Y  +I G+ +  +  +A     EM+  G 
Sbjct: 197 INGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGV 256

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318
            P    +  LI   GR G+  +    L EM E GL P    +  + +    C    + E 
Sbjct: 257 NPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF--CKNGKIPEA 314

Query: 319 IELLE 323
           + +L+
Sbjct: 315 VAILD 319



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 125/298 (41%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T + +I+   K G ++    + ++      +   + YN LL  LC         AL+  M
Sbjct: 52  TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 111

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
             +  VPD  TY+IL +    +G  +       +    G         +L+ GL   G +
Sbjct: 112 ASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKV 171

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
             A++++  ++  G V     +N+LI   C++GE+E     +  +    +  D  TY  L
Sbjct: 172 SIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNAL 231

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  + KA  I  A  LL  + ++G  P    +  +I    R GQ +  F   SEM+  G 
Sbjct: 232 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 291

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   Y  ++    + G+  EA   L +M    + P ++ ++ + D     G +D A
Sbjct: 292 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQA 349



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 120/238 (50%), Gaps = 2/238 (0%)

Query: 7   LMKPYNLSVSP--QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           LM+  +  V+P  +T + +I+ +G+ G ++    V ++      +  V+ Y S++ A C+
Sbjct: 248 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 307

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A A++  M  K  +P+ + Y  +++A+   G   +A   +++M   G +P +  
Sbjct: 308 NGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVT 367

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184
            +LL++GL N   +  A++++N +     + D  ++N+LI   C  G ++  +++   + 
Sbjct: 368 YNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMH 427

Query: 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           K G+ + V TY  LI  +  AG ++E   L   ++++   P  +++  +++   + G 
Sbjct: 428 KYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGN 485



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/289 (22%), Positives = 123/289 (42%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           + T   MK  ++     T + +I    K   + NA ++  +         V  +N+L+ A
Sbjct: 210 FSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 269

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                     + ++  M   G  P+  +Y  +VNA+C +GK+ EA   L +M  K   P 
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
            +  + ++   +  G  + A  +V KM   G    + T+N LI+ +C   ++    E+  
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIIN 389

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           S+    L  D  +Y  LI A    G ID+A  L   + + G K     Y  +I G+   G
Sbjct: 390 SLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAG 449

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290
           + ++    + +M      P+  ++ +++    + G  ++A +   EM +
Sbjct: 450 RLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEMLQ 498



 Score = 84.7 bits (208), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 36/275 (13%)

Query: 74  LIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132
           ++RRM R G  P +  +Y +++     +G+  +A E   EM+++   P     + ++ G 
Sbjct: 1   MLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGH 60

Query: 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192
           +  G LE+  ++ ++M+  G   +  T+N L+  +C++G +     +   +    +  D 
Sbjct: 61  IKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDG 120

Query: 193 STYKILIPAVS-----------------------------------KAGMIDEAFRLLHN 217
            TY IL   +S                                   K G +  A  +L +
Sbjct: 121 FTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQS 180

Query: 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277
           LV  G  P   +Y  +I G  + G+ + AF  F +MK +   P+   Y  LI    +  R
Sbjct: 181 LVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAER 240

Query: 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
              A + L+EM + G+ P    F+ + D     G+
Sbjct: 241 ITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 275



 Score = 46.6 bits (109), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E MK   +S S  T +L+I+       +  A E+ N  +        + YN+L+ A C 
Sbjct: 353 VEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCY 412

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
                 A  L +RM + G     RTY  L++    +G++ E +   Q+M      P    
Sbjct: 413 RGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAI 472

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQ 151
            +++V+     G    A+ +  +M+++
Sbjct: 473 HNIMVEAYSKYGNEIKAEDLRKEMLQK 499


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 136/311 (43%), Gaps = 1/311 (0%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           WK    +K   L     + + +I    K G +  A E+F +        C   YN+++  
Sbjct: 272 WKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMG 331

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
                 F  AY L+ ++  +G +P   ++  ++       K+ EA    + M  K   P 
Sbjct: 332 YGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMK-KDAEPN 390

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
               ++++  L  AG +E A  + ++M   G   +L T N +++ +CK+ + E   EM+ 
Sbjct: 391 SSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFE 450

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241
           +  + G   +  TY  LI  + K G +D+A+RL  N+++ GH   P +Y  +I+  F  G
Sbjct: 451 TASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHG 510

Query: 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301
           + +D    F EM  +G  P+  +    +    + G   +      ++   G  P  R + 
Sbjct: 511 RKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYS 570

Query: 302 LVTDGLKNCGK 312
           ++  GL   G+
Sbjct: 571 ILIHGLTKAGQ 581



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 132/284 (46%)

Query: 29  KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88
           K G V+    +F     +     V  Y+ L+  L +        ++   M ++GF  D R
Sbjct: 543 KAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR 602

Query: 89  TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148
            Y  +V+ +C SGK+ +A E L+EM  K   P V     ++ GL     L+ A  +  + 
Sbjct: 603 AYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEA 662

Query: 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208
             +G  L++  ++SLI+   K G ++    +   + K GL  +V T+  L+ A+ KA  I
Sbjct: 663 KSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEI 722

Query: 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268
           +EA     ++ E    P    Y+ +I G+ R  +++ AF F+ EM+ +G  PN   YT +
Sbjct: 723 NEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTM 782

Query: 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312
           I    + G   +A +        G TP +  F+ + +G+ +  +
Sbjct: 783 IAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANR 826



 Score =  112 bits (279), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 135/289 (46%)

Query: 19  TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78
           T++++++   K    + A E+F   +   C    + Y SL+  L +      AY L   M
Sbjct: 428 TVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENM 487

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
           +  G   +   Y  L+  +   G+  +  +  +EM+ +G  P +   +  +  +  AG +
Sbjct: 488 LDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDV 547

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
           E  + +   +   GF+ D+ +++ LI  + K+G+      +++++ + G   D   Y  +
Sbjct: 548 EKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAV 607

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           +    K+G +D+A+ +L  +      P  + Y  II G+ +  + D+A+  F E K KG 
Sbjct: 608 VDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGI 667

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307
             N  VY+ LI   G+ GR  EA   L EM + GLTP    ++ + D L
Sbjct: 668 ELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDAL 716



 Score =  111 bits (278), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 135/298 (45%), Gaps = 8/298 (2%)

Query: 23  IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG----AYALIRRM 78
           +I+  GK G VD+A  +F            ++Y SL+         HG     + + + M
Sbjct: 467 LIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNF----FMHGRKEDGHKIFKEM 522

Query: 79  IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138
            R+G  PD       ++    +G + + +   +++   GF P VR   +L+ GL  AG  
Sbjct: 523 NRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQA 582

Query: 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198
                + + M +QGF LD   +N++++  CKSG+++   E+   +    +   V+TY  +
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSI 642

Query: 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258
           I  ++K   +DEA+ L       G +    +Y+ +I G  + G+ D+A+    EM  KG 
Sbjct: 643 IDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGL 702

Query: 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLA 316
            PN   +  L+    +     EA      M EM  +P +  + ++ +GL    K++ A
Sbjct: 703 TPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKA 760



 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 128/301 (42%)

Query: 16  SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI 75
           +  T ++II+     G V+ A  + ++         +L  N ++  LC+ K F  AY + 
Sbjct: 390 NSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMF 449

Query: 76  RRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135
               ++G  P+  TY  L++     G + +A    + M D G N        L++     
Sbjct: 450 ETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMH 509

Query: 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195
           G  E   ++  +M ++G   DL   N+ ++ + K+G+VE    ++  +   G   DV +Y
Sbjct: 510 GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 569

Query: 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255
            ILI  ++KAG   E   + H + + G       Y  ++ G  + G+ D A+    EMK+
Sbjct: 570 SILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKV 629

Query: 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDL 315
           K  PP    Y  +I    +  R  EA     E    G+      +  + DG    G+ D 
Sbjct: 630 KRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 316 A 316
           A
Sbjct: 690 A 690



 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 115/276 (41%)

Query: 6   ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65
           E +K Y      ++ S++I    K G       +F+             YN+++   C+ 
Sbjct: 555 EDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKS 614

Query: 66  KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR 125
                AY ++  M  K   P   TY  +++      ++ EA    +E   KG    V   
Sbjct: 615 GKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVY 674

Query: 126 DLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185
             L+ G    G ++ A  ++ +M+K+G   ++ T+NSL++ + K+ E+   +  + S+ +
Sbjct: 675 SSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKE 734

Query: 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245
           +    +  TY ILI  + +    ++AF     + + G  P    Y  +I G+ + G   D
Sbjct: 735 MKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITD 794

Query: 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281
           A   F   K  G  P+   +  LI       R +EA
Sbjct: 795 ACSLFERFKANGGTPDAASFNALIEGMSHANRAIEA 830



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 110/250 (44%)

Query: 8   MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL 67
           MK    ++  +  + +++ F K G +D A EV  +         V  Y S++  L ++  
Sbjct: 592 MKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDR 651

Query: 68  FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127
              AY L      KG   +   Y+ L++ +   G++ EA   L+EM  KG  P V   + 
Sbjct: 652 LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNS 711

Query: 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187
           L+  L+ A  +  A      M +     +  T++ LI  +C+  +       +  + K G
Sbjct: 712 LMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQG 771

Query: 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247
           L  +V TY  +I  ++K G I +A  L      +G  P  + +  +I+GM    +  +A+
Sbjct: 772 LVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAY 831

Query: 248 CFFSEMKIKG 257
             F E ++KG
Sbjct: 832 HVFEETRLKG 841



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 1/256 (0%)

Query: 57  SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116
            L+ AL   +    A  +I  M R  F P    Y +L+ A   + +   A E L++M + 
Sbjct: 152 DLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEV 211

Query: 117 GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176
           G+   V     LV+ L   G +E A  +V+++       D+  +N  I+   K+G V+  
Sbjct: 212 GYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMA 271

Query: 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236
            + ++ +   GL  D  +Y  +I  + KAG + EA  L   +  +   P    Y  +I G
Sbjct: 272 WKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMG 331

Query: 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296
               GQF++A+    ++K +G  P+   +  ++T  G+  R V+ A  L E  +    P 
Sbjct: 332 YGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGK-KRKVDEALTLFEAMKKDAEPN 390

Query: 297 SRCFDLVTDGLKNCGK 312
           S  ++++ D L   GK
Sbjct: 391 SSTYNIIIDMLCMAGK 406



 Score = 81.6 bits (200), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 129/325 (39%), Gaps = 3/325 (0%)

Query: 1   MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF 60
           M K +E M      V     + ++    +   +D+A  V         +     Y  L+ 
Sbjct: 131 MEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIG 190

Query: 61  ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120
           A+ E +    A  L+R+M   G+      +  LV A    G++  A   + E+      P
Sbjct: 191 AMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEP 250

Query: 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180
            +   ++ +     AG ++ A +  +++  QG   D  ++ S+I  +CK+G +    E++
Sbjct: 251 DIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELF 310

Query: 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240
             +           Y  +I     AG  + A++LL  L E G  P    +  I+  + ++
Sbjct: 311 GQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKK 370

Query: 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300
            + D+A   F  MK K   PN   Y ++I M    G+  EA     EM   GL P     
Sbjct: 371 RKVDEALTLFEAMK-KDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTV 429

Query: 301 DLVTDGLKNCGKHDLAEKIELLEVS 325
           +++ D L  C         E+ E +
Sbjct: 430 NIMVDRL--CKAKKFEPAYEMFETA 452



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/317 (20%), Positives = 133/317 (41%), Gaps = 1/317 (0%)

Query: 3   KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL 62
           + I  M+      +    +++I    +    + A+E+  +      +  V L+ +L+ AL
Sbjct: 168 RVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRAL 227

Query: 63  CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV 122
                  GA AL+  +      PD   Y + ++ +  +G +  A +F  E+  +G  P  
Sbjct: 228 AREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDD 287

Query: 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182
                ++  L  AG L  A+++  +M  +  V     +N++I     +G+ E   ++   
Sbjct: 288 VSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQ 347

Query: 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ 242
           + + G    V ++  ++  + K   +DEA  L   + +D  +P  S Y  II  +   G+
Sbjct: 348 LKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPNSSTYNIIIDMLCMAGK 406

Query: 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDL 302
            ++A+    EM+  G  PN     +++    +  +F  A       ++ G  P S  +  
Sbjct: 407 VEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCS 466

Query: 303 VTDGLKNCGKHDLAEKI 319
           + DGL   G  D A ++
Sbjct: 467 LIDGLGKKGNVDDAYRL 483



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%)

Query: 2   WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFA 61
           ++ +E MK   +  +  T   II+   K   +D A  +F +  +   +  V++Y+SL+  
Sbjct: 621 YEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDG 680

Query: 62  LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121
             +V     AY ++  M++KG  P+  T+  L++A   + ++ EA    Q M +   +P 
Sbjct: 681 FGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPN 740

Query: 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181
                +L+ GL        A     +M KQG V ++ T+ ++I  + K G +     ++ 
Sbjct: 741 TYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFE 800

Query: 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH 216
                G   D +++  LI  +S A    EA+ +  
Sbjct: 801 RFKANGGTPDAASFNALIEGMSHANRAIEAYHVFE 835



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/166 (19%), Positives = 73/166 (43%)

Query: 5   IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64
           +E M    L+ +  T + +++   K   ++ A+  F       C      Y+ L+  LC 
Sbjct: 694 LEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCR 753

Query: 65  VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124
           V+ ++ A+   + M ++G VP+  TY  ++      G + +A    +     G  P    
Sbjct: 754 VQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAAS 813

Query: 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170
            + L++G+ +A     A  +  +   +G  ++++   SL++ + K+
Sbjct: 814 FNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKA 859



 Score = 47.8 bits (112), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/182 (19%), Positives = 81/182 (44%)

Query: 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197
           L + ++++ +M   G+ +       L+  + ++  ++    +  ++ +L      S Y +
Sbjct: 128 LAAMEKVLEEMSVLGYGVPNPACADLVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTV 187

Query: 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257
           LI A+++A   + A  LL  + E G++    L+  +++ + R G+ + A     E+K   
Sbjct: 188 LIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSC 247

Query: 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317
             P+  +Y + I   G+ G    A  +  E+   GL P    +  +   L   G+   AE
Sbjct: 248 LEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAE 307

Query: 318 KI 319
           ++
Sbjct: 308 EL 309


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.140    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,073,447,258
Number of Sequences: 23463169
Number of extensions: 206847271
Number of successful extensions: 675270
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5610
Number of HSP's successfully gapped in prelim test: 5231
Number of HSP's that attempted gapping in prelim test: 563712
Number of HSP's gapped (non-prelim): 60409
length of query: 329
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 187
effective length of database: 9,027,425,369
effective search space: 1688128544003
effective search space used: 1688128544003
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)