Query 020193
Match_columns 329
No_of_seqs 697 out of 1389
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 07:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.6E-59 1E-63 415.3 42.0 325 1-325 456-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.6E-57 7.7E-62 403.3 41.3 311 15-325 435-747 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.6E-52 5.5E-57 368.7 33.8 310 2-323 143-488 (697)
4 PLN03081 pentatricopeptide (PP 100.0 5.2E-51 1.1E-55 360.4 34.0 304 9-325 251-556 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.9E-50 1.1E-54 362.0 35.0 314 2-323 273-651 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 5E-50 1.1E-54 361.9 33.8 315 5-327 210-619 (857)
7 PRK11788 tetratricopeptide rep 100.0 3.4E-24 7.4E-29 178.7 35.0 296 23-325 41-346 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-23 2.4E-28 194.0 39.2 301 14-324 598-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 8.4E-24 1.8E-28 176.3 30.9 290 2-298 55-354 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.4E-22 3E-27 186.7 39.8 304 14-325 462-798 (899)
11 PRK15174 Vi polysaccharide exp 99.9 2E-20 4.4E-25 163.7 39.0 306 14-328 73-383 (656)
12 PRK15174 Vi polysaccharide exp 99.9 2E-19 4.4E-24 157.5 36.4 300 20-327 45-348 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-18 3.8E-23 151.9 39.0 309 13-327 156-572 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 1E-17 2.2E-22 147.1 38.2 302 19-327 129-497 (615)
15 PRK11447 cellulose synthase su 99.8 7.1E-17 1.5E-21 150.8 38.4 305 14-324 300-698 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 3.5E-18 7.7E-23 139.4 24.8 306 14-328 113-453 (966)
17 PRK11447 cellulose synthase su 99.8 9.1E-17 2E-21 150.0 37.8 300 15-325 383-739 (1157)
18 KOG4626 O-linked N-acetylgluco 99.8 4.7E-18 1E-22 138.7 23.8 314 4-328 138-487 (966)
19 PRK10049 pgaA outer membrane p 99.8 7.9E-16 1.7E-20 137.8 38.4 308 14-327 46-423 (765)
20 PRK10049 pgaA outer membrane p 99.8 7.6E-16 1.7E-20 137.9 38.1 318 3-327 70-457 (765)
21 KOG4422 Uncharacterized conser 99.8 4.6E-16 1E-20 121.9 30.2 308 13-324 203-588 (625)
22 PRK10747 putative protoheme IX 99.8 9.2E-16 2E-20 127.2 32.7 284 30-326 97-390 (398)
23 TIGR00540 hemY_coli hemY prote 99.8 1.5E-15 3.4E-20 126.5 32.7 292 29-324 96-397 (409)
24 PF13429 TPR_15: Tetratricopep 99.8 8.4E-19 1.8E-23 139.1 12.7 258 23-287 14-273 (280)
25 KOG4422 Uncharacterized conser 99.8 8.5E-16 1.8E-20 120.4 27.8 304 4-311 137-482 (625)
26 PF13429 TPR_15: Tetratricopep 99.8 1.4E-18 3.1E-23 137.8 12.9 260 57-323 13-274 (280)
27 PRK14574 hmsH outer membrane p 99.8 2.2E-14 4.7E-19 127.0 37.2 302 21-327 106-480 (822)
28 PRK14574 hmsH outer membrane p 99.8 5.1E-14 1.1E-18 124.6 37.5 300 22-326 73-445 (822)
29 KOG1126 DNA-binding cell divis 99.8 2.1E-15 4.5E-20 124.3 24.8 286 32-328 334-622 (638)
30 PRK09782 bacteriophage N4 rece 99.7 1.4E-13 3.1E-18 124.3 38.6 303 15-327 374-707 (987)
31 COG3071 HemY Uncharacterized e 99.7 1E-13 2.3E-18 107.9 32.2 287 29-325 96-389 (400)
32 PRK09782 bacteriophage N4 rece 99.7 1.3E-13 2.9E-18 124.5 35.1 264 51-326 476-740 (987)
33 PRK10747 putative protoheme IX 99.7 1.1E-13 2.4E-18 114.8 31.2 263 17-290 117-389 (398)
34 TIGR00540 hemY_coli hemY prote 99.7 2E-13 4.4E-18 113.9 31.2 274 14-290 114-398 (409)
35 COG2956 Predicted N-acetylgluc 99.7 2.5E-13 5.4E-18 102.9 28.1 272 30-308 48-326 (389)
36 KOG2076 RNA polymerase III tra 99.7 4.1E-13 8.8E-18 114.5 32.3 300 19-322 141-508 (895)
37 KOG1126 DNA-binding cell divis 99.7 1.8E-14 3.8E-19 118.9 23.1 272 14-295 350-624 (638)
38 COG2956 Predicted N-acetylgluc 99.7 4.1E-13 8.9E-18 101.8 28.1 282 2-290 55-346 (389)
39 KOG1155 Anaphase-promoting com 99.7 3.2E-13 7E-18 107.1 28.7 288 24-320 234-530 (559)
40 PRK12370 invasion protein regu 99.7 7.7E-13 1.7E-17 114.6 29.9 233 49-289 253-500 (553)
41 KOG2076 RNA polymerase III tra 99.6 3.5E-12 7.6E-17 109.0 31.5 281 4-289 161-510 (895)
42 KOG1155 Anaphase-promoting com 99.6 9.5E-12 2.1E-16 98.9 31.7 305 12-325 159-494 (559)
43 KOG4318 Bicoid mRNA stability 99.6 4.1E-14 8.8E-19 120.3 19.3 254 3-277 11-286 (1088)
44 TIGR02521 type_IV_pilW type IV 99.6 1.7E-12 3.6E-17 100.5 25.8 202 50-255 29-231 (234)
45 TIGR02521 type_IV_pilW type IV 99.6 2.2E-12 4.8E-17 99.8 25.0 199 123-325 32-231 (234)
46 KOG2003 TPR repeat-containing 99.6 1.6E-12 3.4E-17 103.3 23.9 280 25-312 427-709 (840)
47 PRK12370 invasion protein regu 99.6 5.7E-12 1.2E-16 109.2 29.5 268 15-292 254-536 (553)
48 COG3071 HemY Uncharacterized e 99.6 3.6E-11 7.9E-16 94.0 30.5 270 17-295 118-394 (400)
49 KOG1129 TPR repeat-containing 99.6 1E-12 2.3E-17 99.9 18.4 229 56-290 227-457 (478)
50 KOG1129 TPR repeat-containing 99.6 1.1E-12 2.4E-17 99.7 18.5 231 91-327 227-459 (478)
51 PF12569 NARP1: NMDA receptor- 99.6 1.1E-10 2.4E-15 98.4 32.2 297 19-324 6-332 (517)
52 KOG2002 TPR-containing nuclear 99.6 1.7E-11 3.7E-16 105.7 27.1 307 15-326 412-745 (1018)
53 KOG1173 Anaphase-promoting com 99.5 4.8E-11 1E-15 97.3 27.6 288 12-307 239-532 (611)
54 KOG2002 TPR-containing nuclear 99.5 2.3E-11 5.1E-16 104.9 26.7 293 5-302 440-756 (1018)
55 KOG0547 Translocase of outer m 99.5 8E-11 1.7E-15 94.4 27.5 197 125-326 363-566 (606)
56 KOG0495 HAT repeat protein [RN 99.5 3E-10 6.5E-15 94.4 29.9 302 17-327 550-881 (913)
57 KOG2003 TPR repeat-containing 99.5 8.4E-11 1.8E-15 93.7 23.9 298 18-323 277-686 (840)
58 PF12569 NARP1: NMDA receptor- 99.5 7E-10 1.5E-14 93.6 30.6 269 13-289 34-332 (517)
59 PF13041 PPR_2: PPR repeat fam 99.5 1.7E-13 3.6E-18 77.4 6.4 49 50-98 1-49 (50)
60 KOG0495 HAT repeat protein [RN 99.5 3.6E-09 7.9E-14 88.2 33.7 311 6-324 468-780 (913)
61 KOG1173 Anaphase-promoting com 99.5 5.2E-10 1.1E-14 91.4 28.1 274 49-328 241-520 (611)
62 KOG1840 Kinesin light chain [C 99.5 1.2E-10 2.7E-15 97.0 24.4 240 87-326 199-479 (508)
63 PF13041 PPR_2: PPR repeat fam 99.5 2.6E-13 5.7E-18 76.6 6.1 49 260-308 1-49 (50)
64 KOG1840 Kinesin light chain [C 99.4 1.5E-10 3.3E-15 96.5 23.2 241 49-289 196-477 (508)
65 COG3063 PilF Tfp pilus assembl 99.4 5E-10 1.1E-14 81.4 22.7 197 89-289 37-234 (250)
66 cd05804 StaR_like StaR_like; a 99.4 1.2E-08 2.5E-13 84.4 33.9 305 16-325 5-335 (355)
67 COG3063 PilF Tfp pilus assembl 99.4 1.8E-09 3.8E-14 78.6 24.1 197 55-255 38-235 (250)
68 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-09 2.6E-14 87.2 25.9 218 66-292 40-266 (296)
69 PRK11189 lipoprotein NlpI; Pro 99.4 1.6E-09 3.4E-14 86.5 26.2 220 29-257 38-266 (296)
70 KOG0547 Translocase of outer m 99.4 4.5E-10 9.8E-15 90.2 22.4 220 29-254 338-564 (606)
71 KOG1174 Anaphase-promoting com 99.4 4.3E-09 9.3E-14 83.1 27.2 307 13-328 190-502 (564)
72 KOG1174 Anaphase-promoting com 99.4 3.9E-09 8.5E-14 83.3 26.2 272 12-292 227-501 (564)
73 KOG1915 Cell cycle control pro 99.4 2.1E-08 4.6E-13 80.7 30.4 83 240-325 417-499 (677)
74 KOG4340 Uncharacterized conser 99.4 9.6E-10 2.1E-14 83.1 21.5 299 10-320 3-333 (459)
75 KOG1915 Cell cycle control pro 99.3 1.1E-07 2.5E-12 76.7 30.8 306 13-326 170-536 (677)
76 KOG4162 Predicted calmodulin-b 99.3 6.8E-08 1.5E-12 82.2 30.7 318 5-327 311-784 (799)
77 cd05804 StaR_like StaR_like; a 99.3 5.1E-08 1.1E-12 80.6 29.1 263 23-290 49-335 (355)
78 PF04733 Coatomer_E: Coatomer 99.3 9.3E-10 2E-14 86.6 17.6 252 24-291 8-265 (290)
79 KOG4318 Bicoid mRNA stability 99.3 8.1E-10 1.8E-14 94.9 18.2 262 38-319 11-293 (1088)
80 PF04733 Coatomer_E: Coatomer 99.2 2.2E-09 4.8E-14 84.5 16.6 149 96-255 111-264 (290)
81 KOG0624 dsRNA-activated protei 99.2 4.1E-07 8.9E-12 70.6 27.9 305 12-327 33-371 (504)
82 KOG1156 N-terminal acetyltrans 99.2 7.9E-07 1.7E-11 74.5 30.7 67 259-327 366-435 (700)
83 PLN02789 farnesyltranstransfer 99.2 1.8E-07 3.9E-12 74.8 26.0 214 54-273 39-266 (320)
84 PLN02789 farnesyltranstransfer 99.1 2.4E-07 5.1E-12 74.1 26.0 215 19-239 39-267 (320)
85 KOG1125 TPR repeat-containing 99.1 5.1E-08 1.1E-12 80.3 20.8 223 26-254 294-525 (579)
86 KOG2047 mRNA splicing factor [ 99.1 3.7E-06 8E-11 70.7 30.0 300 18-324 249-613 (835)
87 PRK04841 transcriptional regul 99.1 1.8E-06 4E-11 80.5 32.0 308 19-326 411-760 (903)
88 KOG1156 N-terminal acetyltrans 99.1 5E-06 1.1E-10 69.9 30.5 92 230-324 374-466 (700)
89 KOG1070 rRNA processing protei 99.0 7E-07 1.5E-11 81.0 26.2 231 86-320 1457-1694(1710)
90 PRK14720 transcript cleavage f 99.0 5.1E-07 1.1E-11 80.5 25.2 221 15-273 29-268 (906)
91 KOG0548 Molecular co-chaperone 99.0 1.8E-06 3.9E-11 70.9 26.3 126 200-327 306-456 (539)
92 KOG1128 Uncharacterized conser 99.0 6.3E-08 1.4E-12 82.0 18.5 241 11-272 392-633 (777)
93 TIGR03302 OM_YfiO outer membra 99.0 1.9E-07 4.1E-12 72.3 20.4 185 16-221 32-232 (235)
94 KOG1125 TPR repeat-containing 99.0 2.3E-07 4.9E-12 76.6 21.2 252 61-319 294-564 (579)
95 KOG1070 rRNA processing protei 99.0 8.9E-07 1.9E-11 80.4 26.4 239 40-284 1447-1693(1710)
96 KOG2047 mRNA splicing factor [ 99.0 5.2E-06 1.1E-10 69.9 28.5 296 23-327 108-507 (835)
97 KOG3785 Uncharacterized conser 99.0 5.4E-06 1.2E-10 64.9 25.2 92 233-328 399-492 (557)
98 KOG1128 Uncharacterized conser 99.0 7.7E-07 1.7E-11 75.6 22.2 216 91-327 402-617 (777)
99 KOG4340 Uncharacterized conser 98.9 2.4E-06 5.2E-11 65.2 22.3 261 16-287 43-335 (459)
100 PRK10370 formate-dependent nit 98.9 1.4E-06 3E-11 65.0 20.5 118 136-256 53-173 (198)
101 PF12854 PPR_1: PPR repeat 98.9 2.5E-09 5.5E-14 54.2 4.1 32 12-43 2-33 (34)
102 TIGR03302 OM_YfiO outer membra 98.9 1E-06 2.2E-11 68.3 20.4 188 49-256 30-232 (235)
103 COG5010 TadD Flp pilus assembl 98.9 9.7E-07 2.1E-11 66.0 18.8 160 91-254 70-229 (257)
104 KOG1914 mRNA cleavage and poly 98.9 2.2E-05 4.7E-10 64.9 31.1 130 193-324 367-499 (656)
105 PRK15359 type III secretion sy 98.9 9.4E-08 2E-12 67.4 13.0 95 55-151 27-121 (144)
106 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6.1E-14 54.0 3.7 32 257-288 2-33 (34)
107 PRK10370 formate-dependent nit 98.9 1.9E-06 4.2E-11 64.2 20.0 121 65-188 52-175 (198)
108 KOG4162 Predicted calmodulin-b 98.9 9.8E-06 2.1E-10 69.6 26.1 254 33-291 460-783 (799)
109 COG5010 TadD Flp pilus assembl 98.9 6.7E-07 1.5E-11 66.8 17.1 167 49-220 64-230 (257)
110 PRK04841 transcriptional regul 98.9 2.8E-05 6E-10 72.7 32.0 297 29-325 386-719 (903)
111 PRK15179 Vi polysaccharide bio 98.9 5E-06 1.1E-10 73.4 24.9 148 48-199 82-229 (694)
112 KOG3081 Vesicle coat complex C 98.8 8E-06 1.7E-10 61.4 21.7 250 24-290 15-270 (299)
113 KOG3081 Vesicle coat complex C 98.8 6.1E-06 1.3E-10 62.0 20.9 84 203-290 148-235 (299)
114 KOG3785 Uncharacterized conser 98.8 1.9E-05 4E-10 62.0 23.9 56 267-322 398-453 (557)
115 PRK15359 type III secretion sy 98.8 1.3E-06 2.8E-11 61.7 16.1 96 19-116 26-121 (144)
116 KOG2376 Signal recognition par 98.8 5.5E-05 1.2E-09 63.3 27.8 198 19-223 14-255 (652)
117 PRK15179 Vi polysaccharide bio 98.8 3.8E-06 8.3E-11 74.2 21.1 163 12-184 81-243 (694)
118 TIGR02552 LcrH_SycD type III s 98.7 1.5E-06 3.2E-11 61.0 14.4 92 57-150 22-113 (135)
119 TIGR02552 LcrH_SycD type III s 98.7 2E-06 4.4E-11 60.2 15.1 107 16-126 16-122 (135)
120 KOG0985 Vesicle coat protein c 98.7 6.2E-05 1.4E-09 67.0 26.5 276 3-316 968-1268(1666)
121 PRK14720 transcript cleavage f 98.7 1.8E-05 3.8E-10 71.1 23.0 234 49-308 28-268 (906)
122 KOG0985 Vesicle coat protein c 98.7 2.7E-05 5.8E-10 69.2 23.3 203 87-324 1104-1306(1666)
123 KOG0624 dsRNA-activated protei 98.6 0.00011 2.3E-09 57.6 25.2 273 13-292 65-371 (504)
124 COG4783 Putative Zn-dependent 98.6 7E-05 1.5E-09 61.3 22.7 200 32-256 252-454 (484)
125 KOG3617 WD40 and TPR repeat-co 98.6 1.2E-05 2.7E-10 69.7 18.9 240 16-289 725-994 (1416)
126 KOG1127 TPR repeat-containing 98.6 1.9E-05 4.2E-10 69.8 19.7 162 18-184 493-657 (1238)
127 KOG3616 Selective LIM binding 98.6 2E-05 4.2E-10 67.8 19.1 190 98-321 743-932 (1636)
128 COG4783 Putative Zn-dependent 98.6 8.5E-05 1.8E-09 60.8 21.8 238 25-291 210-454 (484)
129 KOG3060 Uncharacterized conser 98.6 0.00012 2.7E-09 54.8 20.7 191 29-223 24-222 (289)
130 KOG2376 Signal recognition par 98.5 0.00035 7.5E-09 58.7 29.7 147 172-322 356-516 (652)
131 KOG3616 Selective LIM binding 98.5 4E-05 8.7E-10 66.0 20.2 134 166-321 741-874 (1636)
132 KOG3060 Uncharacterized conser 98.5 0.00016 3.4E-09 54.3 22.4 188 65-256 25-220 (289)
133 PF09976 TPR_21: Tetratricopep 98.5 1.2E-05 2.5E-10 57.0 14.3 85 95-181 56-142 (145)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 9.1E-06 2E-10 66.6 14.8 125 54-184 171-295 (395)
135 KOG3617 WD40 and TPR repeat-co 98.5 4E-05 8.7E-10 66.7 18.7 261 15-320 755-1058(1416)
136 PF10037 MRP-S27: Mitochondria 98.5 1.2E-05 2.7E-10 66.2 14.9 121 84-204 63-185 (429)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.6E-05 3.6E-10 65.1 15.4 122 127-254 174-295 (395)
138 PF10037 MRP-S27: Mitochondria 98.4 5.8E-06 1.3E-10 68.0 12.5 124 12-135 61-186 (429)
139 TIGR00756 PPR pentatricopeptid 98.4 5E-07 1.1E-11 46.5 4.2 33 264-296 2-34 (35)
140 PF09976 TPR_21: Tetratricopep 98.4 3E-05 6.5E-10 54.9 14.5 116 205-322 24-143 (145)
141 KOG2053 Mitochondrial inherita 98.4 0.00095 2.1E-08 58.9 25.7 109 29-143 21-131 (932)
142 TIGR00756 PPR pentatricopeptid 98.4 5.4E-07 1.2E-11 46.3 4.0 33 54-86 2-34 (35)
143 KOG0548 Molecular co-chaperone 98.4 0.00046 9.9E-09 57.3 22.3 222 20-256 227-455 (539)
144 PF13812 PPR_3: Pentatricopept 98.4 6.7E-07 1.5E-11 45.6 4.1 33 263-295 2-34 (34)
145 PF13812 PPR_3: Pentatricopept 98.4 7.7E-07 1.7E-11 45.4 3.9 31 54-84 3-33 (34)
146 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.6E-05 7.9E-10 52.4 13.0 97 19-116 4-105 (119)
147 PF08579 RPM2: Mitochondrial r 98.3 2E-05 4.4E-10 51.1 10.3 74 24-97 32-114 (120)
148 PF08579 RPM2: Mitochondrial r 98.3 1.7E-05 3.7E-10 51.4 9.5 80 55-134 28-116 (120)
149 PRK15363 pathogenicity island 98.3 5E-05 1.1E-09 53.1 12.5 99 51-151 34-132 (157)
150 cd00189 TPR Tetratricopeptide 98.3 3E-05 6.6E-10 50.2 11.1 94 20-115 3-96 (100)
151 KOG1914 mRNA cleavage and poly 98.3 0.0019 4.1E-08 54.0 22.6 208 34-244 310-527 (656)
152 PRK10866 outer membrane biogen 98.2 0.00087 1.9E-08 51.8 19.6 183 52-254 32-239 (243)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00011 2.4E-09 50.0 13.1 98 54-151 4-105 (119)
154 PF05843 Suf: Suppressor of fo 98.2 7.4E-05 1.6E-09 59.2 13.1 143 158-305 2-148 (280)
155 KOG2053 Mitochondrial inherita 98.2 0.0045 9.8E-08 54.9 30.2 209 9-223 37-257 (932)
156 cd00189 TPR Tetratricopeptide 98.2 6.9E-05 1.5E-09 48.4 10.9 94 55-150 3-96 (100)
157 PF05843 Suf: Suppressor of fo 98.2 9.8E-05 2.1E-09 58.5 13.4 130 19-151 3-136 (280)
158 KOG1127 TPR repeat-containing 98.2 0.00045 9.8E-09 61.6 18.1 182 33-220 474-658 (1238)
159 PF12895 Apc3: Anaphase-promot 98.1 1.8E-05 3.9E-10 50.1 7.5 81 30-112 2-83 (84)
160 PLN03088 SGT1, suppressor of 98.1 0.00012 2.6E-09 60.1 14.2 102 23-128 8-109 (356)
161 PF12895 Apc3: Anaphase-promot 98.1 6.7E-06 1.4E-10 52.1 5.2 81 65-147 2-83 (84)
162 PRK15363 pathogenicity island 98.1 0.00013 2.8E-09 51.1 11.8 95 90-186 38-132 (157)
163 PRK02603 photosystem I assembl 98.1 0.0004 8.7E-09 50.8 14.8 88 52-140 35-124 (172)
164 PRK10866 outer membrane biogen 98.1 0.0018 4E-08 50.1 18.8 58 93-151 38-98 (243)
165 PF01535 PPR: PPR repeat; Int 98.1 6.2E-06 1.4E-10 40.9 3.6 29 264-292 2-30 (31)
166 PRK10153 DNA-binding transcrip 98.1 0.00076 1.6E-08 58.1 18.0 136 49-187 334-483 (517)
167 CHL00033 ycf3 photosystem I as 98.1 0.0002 4.3E-09 52.2 12.4 94 193-287 36-138 (168)
168 PF14938 SNAP: Soluble NSF att 98.0 0.0034 7.3E-08 50.0 20.2 92 130-221 122-225 (282)
169 CHL00033 ycf3 photosystem I as 98.0 0.00022 4.7E-09 52.0 12.4 81 52-133 35-117 (168)
170 PF14938 SNAP: Soluble NSF att 98.0 0.0003 6.5E-09 56.0 13.9 26 89-114 37-62 (282)
171 PF01535 PPR: PPR repeat; Int 98.0 9.8E-06 2.1E-10 40.2 3.6 26 125-150 3-28 (31)
172 PLN03088 SGT1, suppressor of 98.0 0.00029 6.2E-09 58.0 13.9 92 59-152 9-100 (356)
173 PF14559 TPR_19: Tetratricopep 98.0 3.2E-05 7E-10 46.7 6.5 53 28-81 2-54 (68)
174 PF13414 TPR_11: TPR repeat; P 98.0 0.00011 2.3E-09 44.5 8.1 64 16-80 2-66 (69)
175 PRK02603 photosystem I assembl 98.0 0.001 2.2E-08 48.7 14.7 83 160-243 38-122 (172)
176 PF13432 TPR_16: Tetratricopep 97.9 0.0001 2.2E-09 44.0 7.5 58 23-81 3-60 (65)
177 PF06239 ECSIT: Evolutionarily 97.9 0.00042 9.1E-09 51.0 11.3 49 15-63 45-98 (228)
178 KOG1130 Predicted G-alpha GTPa 97.9 0.0003 6.5E-09 56.6 11.3 132 194-325 197-343 (639)
179 PRK10153 DNA-binding transcrip 97.9 0.0016 3.6E-08 56.1 16.5 63 263-327 421-483 (517)
180 PF13525 YfiO: Outer membrane 97.9 0.0063 1.4E-07 45.8 18.6 65 17-81 5-71 (203)
181 PF13414 TPR_11: TPR repeat; P 97.8 0.00011 2.4E-09 44.5 6.7 67 261-328 2-69 (69)
182 PF06239 ECSIT: Evolutionarily 97.8 0.00089 1.9E-08 49.4 12.1 104 50-172 45-153 (228)
183 KOG0550 Molecular chaperone (D 97.8 0.009 2E-07 48.5 18.5 280 22-310 54-370 (486)
184 PF12688 TPR_5: Tetratrico pep 97.8 0.003 6.4E-08 42.7 13.3 56 60-115 9-66 (120)
185 KOG2796 Uncharacterized conser 97.8 0.0083 1.8E-07 45.7 16.6 131 55-186 180-315 (366)
186 COG4700 Uncharacterized protei 97.8 0.0072 1.6E-07 43.5 18.7 128 84-213 86-214 (251)
187 PF13281 DUF4071: Domain of un 97.7 0.014 3.1E-07 47.6 18.5 166 54-221 143-334 (374)
188 PF14559 TPR_19: Tetratricopep 97.7 0.0002 4.3E-09 43.1 6.4 52 64-116 3-54 (68)
189 COG4235 Cytochrome c biogenesi 97.7 0.0024 5.1E-08 49.6 13.3 128 33-165 138-268 (287)
190 COG4235 Cytochrome c biogenesi 97.7 0.0043 9.4E-08 48.2 14.7 103 84-188 153-258 (287)
191 PF13525 YfiO: Outer membrane 97.7 0.012 2.5E-07 44.4 18.0 49 268-318 147-199 (203)
192 KOG0553 TPR repeat-containing 97.7 0.00097 2.1E-08 51.5 10.7 101 61-165 90-190 (304)
193 PF03704 BTAD: Bacterial trans 97.7 0.00092 2E-08 47.4 10.2 73 52-125 62-139 (146)
194 PF04840 Vps16_C: Vps16, C-ter 97.7 0.02 4.4E-07 46.1 26.5 110 193-322 178-287 (319)
195 KOG0553 TPR repeat-containing 97.7 0.0012 2.6E-08 51.0 10.9 86 98-185 92-177 (304)
196 PF12688 TPR_5: Tetratrico pep 97.6 0.0052 1.1E-07 41.5 12.8 54 202-255 11-66 (120)
197 PF13432 TPR_16: Tetratricopep 97.6 0.00035 7.7E-09 41.6 6.6 56 234-290 4-59 (65)
198 KOG0550 Molecular chaperone (D 97.6 0.015 3.3E-07 47.2 16.8 261 58-327 55-351 (486)
199 KOG1538 Uncharacterized conser 97.6 0.013 2.9E-07 50.4 17.0 259 13-291 552-846 (1081)
200 PF03704 BTAD: Bacterial trans 97.6 0.0061 1.3E-07 43.2 13.5 72 229-301 64-140 (146)
201 COG3898 Uncharacterized membra 97.5 0.031 6.7E-07 45.3 25.4 286 20-322 85-388 (531)
202 PRK10803 tol-pal system protei 97.5 0.0042 9.1E-08 48.6 12.6 97 55-151 146-246 (263)
203 KOG1130 Predicted G-alpha GTPa 97.5 0.0024 5.1E-08 51.7 11.2 264 25-289 25-342 (639)
204 PF13371 TPR_9: Tetratricopept 97.5 0.001 2.2E-08 40.7 7.5 57 25-82 3-59 (73)
205 PF12921 ATP13: Mitochondrial 97.5 0.0042 9E-08 42.4 10.6 102 191-312 1-103 (126)
206 PRK10803 tol-pal system protei 97.5 0.0056 1.2E-07 47.9 12.7 88 168-255 154-245 (263)
207 COG4700 Uncharacterized protei 97.4 0.025 5.4E-07 40.8 18.0 135 119-255 86-225 (251)
208 KOG2280 Vacuolar assembly/sort 97.4 0.092 2E-06 46.2 24.0 109 194-321 686-794 (829)
209 PRK15331 chaperone protein Sic 97.3 0.0069 1.5E-07 42.9 10.6 93 57-151 42-134 (165)
210 PF13281 DUF4071: Domain of un 97.3 0.072 1.6E-06 43.7 19.0 97 89-185 143-254 (374)
211 PF13371 TPR_9: Tetratricopept 97.2 0.0037 8E-08 38.1 7.7 52 98-150 6-57 (73)
212 PF13424 TPR_12: Tetratricopep 97.2 0.0028 6E-08 39.3 6.9 25 89-113 48-72 (78)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.03 6.6E-07 46.6 14.2 67 14-81 72-141 (453)
214 PF12921 ATP13: Mitochondrial 97.2 0.011 2.4E-07 40.3 9.9 98 156-273 1-99 (126)
215 PF13424 TPR_12: Tetratricopep 97.1 0.0026 5.7E-08 39.4 6.5 64 17-80 5-74 (78)
216 PRK15331 chaperone protein Sic 97.1 0.051 1.1E-06 38.6 14.4 85 204-290 49-133 (165)
217 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.17 3.7E-06 42.0 27.6 69 14-83 39-107 (660)
218 COG3118 Thioredoxin domain-con 96.9 0.14 3E-06 40.1 15.8 144 60-206 142-286 (304)
219 COG3898 Uncharacterized membra 96.9 0.17 3.8E-06 41.2 30.6 256 55-323 85-355 (531)
220 KOG2796 Uncharacterized conser 96.9 0.13 2.8E-06 39.5 22.6 140 159-301 179-323 (366)
221 PF04840 Vps16_C: Vps16, C-ter 96.9 0.17 3.8E-06 40.9 23.0 109 159-287 179-287 (319)
222 smart00299 CLH Clathrin heavy 96.8 0.089 1.9E-06 36.9 14.0 126 20-168 10-136 (140)
223 PF13428 TPR_14: Tetratricopep 96.8 0.0039 8.5E-08 33.6 4.5 40 18-58 2-41 (44)
224 PF10300 DUF3808: Protein of u 96.8 0.18 4E-06 43.4 16.7 176 37-219 177-374 (468)
225 KOG1538 Uncharacterized conser 96.6 0.2 4.3E-06 43.6 15.0 189 5-221 623-846 (1081)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.16 3.5E-06 42.4 13.9 66 49-116 72-141 (453)
227 PF08631 SPO22: Meiosis protei 96.5 0.3 6.4E-06 39.0 24.3 123 27-151 3-150 (278)
228 PF09205 DUF1955: Domain of un 96.5 0.14 3E-06 34.8 12.6 136 28-188 13-151 (161)
229 PF10300 DUF3808: Protein of u 96.5 0.39 8.5E-06 41.4 16.4 161 160-323 191-373 (468)
230 PRK11906 transcriptional regul 96.5 0.45 9.7E-06 40.0 16.8 117 32-151 273-401 (458)
231 COG4105 ComL DNA uptake lipopr 96.4 0.28 6.1E-06 37.7 19.2 54 233-287 173-229 (254)
232 PF04053 Coatomer_WDAD: Coatom 96.4 0.18 3.8E-06 42.9 13.8 23 159-181 349-371 (443)
233 KOG0543 FKBP-type peptidyl-pro 96.4 0.11 2.4E-06 42.4 11.7 95 89-185 259-354 (397)
234 COG3629 DnrI DNA-binding trans 96.4 0.061 1.3E-06 42.1 10.0 80 52-132 153-237 (280)
235 KOG2041 WD40 repeat protein [G 96.4 0.64 1.4E-05 41.1 18.6 204 49-287 689-903 (1189)
236 KOG0543 FKBP-type peptidyl-pro 96.4 0.21 4.6E-06 40.8 13.1 98 122-221 257-355 (397)
237 KOG2610 Uncharacterized conser 96.4 0.16 3.5E-06 40.5 12.0 152 29-183 115-273 (491)
238 KOG1585 Protein required for f 96.3 0.32 6.9E-06 37.1 16.2 90 195-285 153-250 (308)
239 PF04053 Coatomer_WDAD: Coatom 96.3 0.18 3.9E-06 42.9 13.1 158 25-217 269-427 (443)
240 KOG4555 TPR repeat-containing 96.3 0.14 3.1E-06 34.7 9.8 91 61-152 52-145 (175)
241 KOG1941 Acetylcholine receptor 96.2 0.49 1.1E-05 38.3 14.4 45 64-108 18-64 (518)
242 KOG3941 Intermediate in Toll s 96.2 0.066 1.4E-06 41.5 9.1 86 16-101 66-172 (406)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.62 1.3E-05 38.9 18.7 128 124-255 399-530 (660)
244 KOG2041 WD40 repeat protein [G 96.2 0.86 1.9E-05 40.4 23.1 31 14-44 689-719 (1189)
245 COG1729 Uncharacterized protei 96.2 0.26 5.6E-06 38.2 12.1 97 194-291 144-244 (262)
246 KOG1585 Protein required for f 96.2 0.4 8.7E-06 36.5 16.7 115 135-250 123-250 (308)
247 KOG3941 Intermediate in Toll s 96.1 0.059 1.3E-06 41.7 8.6 46 138-183 139-185 (406)
248 COG1729 Uncharacterized protei 96.1 0.18 4E-06 38.9 11.2 97 159-256 144-244 (262)
249 PF08631 SPO22: Meiosis protei 96.1 0.53 1.1E-05 37.5 24.8 19 63-81 4-22 (278)
250 PRK11906 transcriptional regul 96.1 0.74 1.6E-05 38.8 15.7 163 158-326 252-436 (458)
251 COG3118 Thioredoxin domain-con 95.9 0.64 1.4E-05 36.6 17.0 51 98-149 145-195 (304)
252 PF13512 TPR_18: Tetratricopep 95.9 0.36 7.8E-06 33.6 12.0 56 167-222 20-77 (142)
253 PF09205 DUF1955: Domain of un 95.9 0.33 7.2E-06 33.1 15.4 135 64-223 14-151 (161)
254 KOG4555 TPR repeat-containing 95.8 0.28 6E-06 33.3 9.6 93 201-294 52-147 (175)
255 PF04184 ST7: ST7 protein; In 95.8 1 2.2E-05 38.3 16.7 79 124-202 261-341 (539)
256 PF13428 TPR_14: Tetratricopep 95.8 0.046 9.9E-07 29.3 5.1 26 126-151 5-30 (44)
257 smart00299 CLH Clathrin heavy 95.7 0.43 9.2E-06 33.4 15.9 42 127-169 12-53 (140)
258 PF07079 DUF1347: Protein of u 95.7 1 2.2E-05 37.7 23.2 138 27-169 16-179 (549)
259 PF13512 TPR_18: Tetratricopep 95.7 0.42 9.1E-06 33.2 12.2 54 28-81 21-76 (142)
260 PF10602 RPN7: 26S proteasome 95.6 0.24 5.2E-06 36.3 9.8 63 53-115 37-101 (177)
261 KOG2114 Vacuolar assembly/sort 95.5 0.49 1.1E-05 42.6 12.6 176 55-253 337-516 (933)
262 PF13170 DUF4003: Protein of u 95.5 1.1 2.3E-05 36.1 21.1 135 138-274 78-229 (297)
263 COG4105 ComL DNA uptake lipopr 95.4 0.93 2E-05 34.9 20.4 72 62-133 44-117 (254)
264 KOG1941 Acetylcholine receptor 95.4 1 2.3E-05 36.6 12.9 228 27-255 16-274 (518)
265 COG0457 NrfG FOG: TPR repeat [ 95.4 0.88 1.9E-05 34.6 28.1 224 65-291 36-265 (291)
266 COG3629 DnrI DNA-binding trans 95.3 0.35 7.7E-06 38.0 10.1 60 159-219 155-214 (280)
267 PF10602 RPN7: 26S proteasome 95.3 0.71 1.5E-05 33.9 11.2 96 18-113 37-139 (177)
268 COG4785 NlpI Lipoprotein NlpI, 95.2 0.94 2E-05 34.0 15.4 28 229-256 239-266 (297)
269 PF13176 TPR_7: Tetratricopept 95.1 0.042 9.1E-07 28.0 3.3 25 300-324 2-26 (36)
270 PF07035 Mic1: Colon cancer-as 95.1 0.85 1.9E-05 32.9 15.2 28 76-103 18-45 (167)
271 COG0457 NrfG FOG: TPR repeat [ 95.1 1.1 2.4E-05 34.0 28.7 225 30-256 36-265 (291)
272 PF04184 ST7: ST7 protein; In 95.1 1.9 4.1E-05 36.8 16.8 60 231-290 263-323 (539)
273 PF13431 TPR_17: Tetratricopep 95.0 0.038 8.3E-07 27.7 2.8 31 41-72 3-33 (34)
274 COG4649 Uncharacterized protei 94.9 0.95 2.1E-05 32.6 12.8 123 64-186 70-196 (221)
275 PF02259 FAT: FAT domain; Int 94.9 1.8 3.9E-05 35.8 22.7 54 23-80 4-57 (352)
276 PF07035 Mic1: Colon cancer-as 94.8 1.1 2.3E-05 32.4 15.0 132 39-184 16-147 (167)
277 KOG1920 IkappaB kinase complex 94.7 4.1 9E-05 38.7 21.0 108 161-286 943-1050(1265)
278 PF09613 HrpB1_HrpK: Bacterial 94.4 1.3 2.7E-05 31.6 12.5 53 28-81 21-73 (160)
279 PF11207 DUF2989: Protein of u 94.3 1.1 2.3E-05 33.3 9.9 74 68-142 122-198 (203)
280 PF13176 TPR_7: Tetratricopept 94.3 0.13 2.9E-06 26.0 4.0 23 55-77 2-24 (36)
281 KOG1920 IkappaB kinase complex 94.2 5.2 0.00011 38.1 19.2 115 190-324 933-1053(1265)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 94.2 0.28 6.1E-06 31.2 5.8 64 32-96 22-85 (103)
283 KOG4570 Uncharacterized conser 94.2 0.91 2E-05 36.1 9.8 102 153-256 60-164 (418)
284 KOG2114 Vacuolar assembly/sort 94.1 4.6 0.0001 36.8 15.8 176 90-288 337-516 (933)
285 KOG2280 Vacuolar assembly/sort 93.9 4.7 0.0001 36.3 22.7 87 226-322 683-769 (829)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.79 1.7E-05 29.3 7.2 44 211-254 26-69 (103)
287 PF00515 TPR_1: Tetratricopept 93.8 0.19 4.2E-06 24.9 3.9 29 299-327 3-31 (34)
288 PF02284 COX5A: Cytochrome c o 93.7 0.72 1.6E-05 29.8 7.0 44 212-255 30-73 (108)
289 PF02259 FAT: FAT domain; Int 93.7 3.4 7.4E-05 34.2 19.9 192 59-256 5-213 (352)
290 PF07719 TPR_2: Tetratricopept 93.6 0.22 4.7E-06 24.6 3.9 29 299-327 3-31 (34)
291 COG4649 Uncharacterized protei 93.6 2 4.4E-05 31.0 13.6 51 135-185 71-122 (221)
292 PF11207 DUF2989: Protein of u 93.3 1.2 2.7E-05 33.0 8.6 71 175-246 124-197 (203)
293 KOG4570 Uncharacterized conser 93.2 2.7 5.9E-05 33.6 10.8 137 82-221 15-164 (418)
294 COG4455 ImpE Protein of avirul 93.2 0.96 2.1E-05 34.0 7.9 77 19-96 3-81 (273)
295 PF07079 DUF1347: Protein of u 93.0 5.1 0.00011 33.9 29.2 45 20-64 131-179 (549)
296 PF00637 Clathrin: Region in C 92.8 0.066 1.4E-06 37.7 1.7 85 198-289 13-97 (143)
297 PF13170 DUF4003: Protein of u 92.8 4.3 9.4E-05 32.7 22.9 132 103-236 78-226 (297)
298 KOG4234 TPR repeat-containing 92.8 2 4.3E-05 31.9 8.9 90 201-292 104-198 (271)
299 PF13431 TPR_17: Tetratricopep 92.5 0.19 4.2E-06 25.1 2.7 20 157-176 13-32 (34)
300 PF13929 mRNA_stabil: mRNA sta 92.5 4.4 9.6E-05 32.1 16.2 118 65-182 141-263 (292)
301 PF13181 TPR_8: Tetratricopept 92.4 0.4 8.6E-06 23.7 3.9 29 299-327 3-31 (34)
302 PF04097 Nic96: Nup93/Nic96; 92.3 8.5 0.00018 34.8 16.4 159 164-327 265-444 (613)
303 PF07719 TPR_2: Tetratricopept 92.2 0.51 1.1E-05 23.2 4.2 26 55-80 4-29 (34)
304 COG4455 ImpE Protein of avirul 92.1 2 4.3E-05 32.4 8.4 56 93-149 7-62 (273)
305 PF13374 TPR_10: Tetratricopep 92.1 0.37 8.1E-06 25.1 3.8 27 299-325 4-30 (42)
306 COG2976 Uncharacterized protei 92.0 3.9 8.4E-05 30.3 12.5 90 93-187 95-189 (207)
307 PF02284 COX5A: Cytochrome c o 92.0 2.3 5E-05 27.6 9.6 47 35-81 28-74 (108)
308 COG3947 Response regulator con 91.9 1.7 3.7E-05 34.2 8.2 61 52-113 279-339 (361)
309 KOG2610 Uncharacterized conser 91.9 5.9 0.00013 32.1 16.7 114 101-217 117-234 (491)
310 KOG1258 mRNA processing protei 91.7 8.6 0.00019 33.7 23.0 122 192-317 297-420 (577)
311 PF13374 TPR_10: Tetratricopep 91.4 0.69 1.5E-05 24.0 4.3 26 54-79 4-29 (42)
312 PF00637 Clathrin: Region in C 91.1 0.073 1.6E-06 37.5 0.3 83 23-112 13-95 (143)
313 PF00515 TPR_1: Tetratricopept 91.0 0.98 2.1E-05 22.2 4.5 25 55-79 4-28 (34)
314 PRK15180 Vi polysaccharide bio 90.9 3.5 7.5E-05 35.1 9.5 87 96-184 332-418 (831)
315 TIGR02561 HrpB1_HrpK type III 90.8 4.3 9.4E-05 28.6 10.2 52 29-81 22-73 (153)
316 COG4785 NlpI Lipoprotein NlpI, 90.8 5.8 0.00013 30.0 15.1 185 97-293 75-268 (297)
317 KOG4648 Uncharacterized conser 90.7 0.83 1.8E-05 36.7 5.7 86 200-297 105-198 (536)
318 PF07163 Pex26: Pex26 protein; 90.5 6.2 0.00013 31.1 9.9 89 92-180 88-181 (309)
319 PF07163 Pex26: Pex26 protein; 90.4 6.7 0.00015 30.9 10.0 127 19-145 37-181 (309)
320 KOG1550 Extracellular protein 90.4 13 0.00028 33.3 20.6 183 68-258 228-428 (552)
321 KOG2471 TPR repeat-containing 90.3 11 0.00024 32.4 11.9 106 202-309 250-381 (696)
322 KOG1550 Extracellular protein 90.2 13 0.00029 33.2 24.5 244 33-292 228-505 (552)
323 KOG0276 Vesicle coat complex C 90.1 7.8 0.00017 34.1 11.1 150 28-217 597-746 (794)
324 KOG4077 Cytochrome c oxidase, 90.0 1.9 4.2E-05 29.1 6.0 79 16-95 46-126 (149)
325 PF09613 HrpB1_HrpK: Bacterial 89.9 5.6 0.00012 28.4 13.5 51 64-116 22-73 (160)
326 COG1747 Uncharacterized N-term 89.9 12 0.00027 32.3 25.3 165 85-256 64-234 (711)
327 PF10579 Rapsyn_N: Rapsyn N-te 89.6 2.1 4.6E-05 26.2 5.5 47 274-320 18-66 (80)
328 PF13762 MNE1: Mitochondrial s 89.6 5.6 0.00012 28.0 10.3 83 55-137 42-130 (145)
329 PF13174 TPR_6: Tetratricopept 89.2 1.4 2.9E-05 21.3 4.1 21 60-80 8-28 (33)
330 PF13929 mRNA_stabil: mRNA sta 89.1 10 0.00022 30.2 18.2 137 173-309 144-290 (292)
331 PF06552 TOM20_plant: Plant sp 89.0 6.1 0.00013 28.9 8.4 110 33-151 7-136 (186)
332 PF07721 TPR_4: Tetratricopept 88.7 0.71 1.5E-05 21.3 2.6 20 21-40 5-24 (26)
333 KOG4234 TPR repeat-containing 88.7 8.3 0.00018 28.8 9.2 89 97-187 105-198 (271)
334 TIGR03504 FimV_Cterm FimV C-te 88.3 1.6 3.5E-05 23.4 4.0 22 129-150 6-27 (44)
335 TIGR03504 FimV_Cterm FimV C-te 88.2 1.6 3.4E-05 23.4 4.0 21 59-79 6-26 (44)
336 PF07575 Nucleopor_Nup85: Nup8 87.3 16 0.00035 32.7 12.0 33 274-306 507-539 (566)
337 PF13181 TPR_8: Tetratricopept 87.1 2.1 4.5E-05 20.9 4.0 27 264-290 3-29 (34)
338 COG2909 MalT ATP-dependent tra 86.5 28 0.0006 32.4 23.3 90 132-221 425-526 (894)
339 KOG0276 Vesicle coat complex C 86.3 17 0.00037 32.2 10.8 25 193-217 667-691 (794)
340 PRK09687 putative lyase; Provi 85.3 17 0.00038 29.1 26.5 235 50-309 35-279 (280)
341 PRK15180 Vi polysaccharide bio 84.8 25 0.00054 30.3 14.2 130 21-154 293-423 (831)
342 COG0735 Fur Fe2+/Zn2+ uptake r 84.5 6.7 0.00015 27.7 6.7 44 58-101 26-69 (145)
343 KOG1586 Protein required for f 84.4 17 0.00036 28.1 16.8 24 201-224 163-186 (288)
344 KOG4077 Cytochrome c oxidase, 84.4 10 0.00022 25.8 6.9 44 213-256 70-113 (149)
345 TIGR02561 HrpB1_HrpK type III 84.4 12 0.00026 26.4 12.3 20 132-151 54-73 (153)
346 PF12926 MOZART2: Mitotic-spin 83.4 5.7 0.00012 24.8 5.1 65 15-81 8-72 (88)
347 KOG4648 Uncharacterized conser 83.3 6.8 0.00015 31.9 6.8 89 25-115 105-193 (536)
348 COG1747 Uncharacterized N-term 82.4 33 0.00071 29.9 25.0 180 119-306 63-248 (711)
349 KOG0890 Protein kinase of the 82.3 71 0.0015 33.8 22.7 122 22-150 1388-1511(2382)
350 COG2976 Uncharacterized protei 81.6 20 0.00042 26.8 12.9 91 200-292 97-189 (207)
351 PHA02875 ankyrin repeat protei 81.1 34 0.00073 29.2 13.2 208 61-297 8-230 (413)
352 PRK09462 fur ferric uptake reg 80.7 13 0.00028 26.4 7.1 58 6-64 6-64 (148)
353 COG5159 RPN6 26S proteasome re 80.6 27 0.00059 27.8 11.0 54 127-180 8-68 (421)
354 KOG1464 COP9 signalosome, subu 80.5 26 0.00057 27.6 18.0 202 11-213 20-252 (440)
355 KOG2063 Vacuolar assembly/sort 80.4 54 0.0012 31.1 15.1 18 27-44 356-373 (877)
356 cd08819 CARD_MDA5_2 Caspase ac 80.0 12 0.00027 23.5 7.1 36 99-139 48-83 (88)
357 PF11846 DUF3366: Domain of un 79.9 12 0.00027 27.8 7.2 53 239-291 120-173 (193)
358 KOG4507 Uncharacterized conser 79.9 23 0.0005 31.3 9.2 99 65-165 620-718 (886)
359 cd08819 CARD_MDA5_2 Caspase ac 79.7 13 0.00028 23.5 7.3 39 274-317 48-86 (88)
360 cd00280 TRFH Telomeric Repeat 79.7 19 0.0004 26.6 7.4 20 236-255 120-139 (200)
361 KOG0686 COP9 signalosome, subu 79.6 36 0.00079 28.6 14.1 64 53-116 151-216 (466)
362 PF10579 Rapsyn_N: Rapsyn N-te 79.4 10 0.00022 23.4 5.2 17 91-107 47-63 (80)
363 PHA02875 ankyrin repeat protei 78.6 41 0.00089 28.7 15.6 17 94-110 72-88 (413)
364 TIGR02508 type_III_yscG type I 78.5 16 0.00034 23.8 7.7 49 132-186 49-97 (115)
365 PF11846 DUF3366: Domain of un 78.2 14 0.0003 27.6 7.0 54 203-256 119-173 (193)
366 PRK09687 putative lyase; Provi 78.0 34 0.00074 27.4 26.9 18 190-207 204-221 (280)
367 TIGR02508 type_III_yscG type I 78.0 16 0.00036 23.8 7.9 79 32-117 20-98 (115)
368 PRK11639 zinc uptake transcrip 77.8 12 0.00026 27.3 6.3 61 43-104 17-77 (169)
369 smart00028 TPR Tetratricopepti 77.6 4.2 9.1E-05 18.7 3.0 26 264-289 3-28 (34)
370 PF08424 NRDE-2: NRDE-2, neces 77.5 39 0.00083 27.8 16.9 138 49-188 16-185 (321)
371 PF08424 NRDE-2: NRDE-2, neces 77.5 39 0.00084 27.8 16.9 117 175-293 49-185 (321)
372 PF07678 A2M_comp: A-macroglob 76.8 34 0.00074 26.8 9.4 29 86-114 131-159 (246)
373 PF11663 Toxin_YhaV: Toxin wit 76.1 3.9 8.4E-05 28.1 3.1 29 276-306 109-137 (140)
374 PF13762 MNE1: Mitochondrial s 75.9 25 0.00054 24.8 10.2 83 90-172 42-130 (145)
375 PF10366 Vps39_1: Vacuolar sor 75.6 21 0.00045 23.7 7.2 26 230-255 42-67 (108)
376 PF14689 SPOB_a: Sensor_kinase 74.7 9.8 0.00021 22.2 4.2 21 268-288 29-49 (62)
377 COG0735 Fur Fe2+/Zn2+ uptake r 74.4 26 0.00057 24.7 7.1 30 127-156 25-54 (145)
378 PF14689 SPOB_a: Sensor_kinase 74.2 15 0.00032 21.4 5.2 21 93-113 29-49 (62)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 74.0 26 0.00056 24.1 9.9 43 280-322 81-124 (126)
380 PRK10564 maltose regulon perip 73.3 11 0.00023 30.2 5.3 37 54-90 259-295 (303)
381 PF09454 Vps23_core: Vps23 cor 73.2 16 0.00034 21.6 4.8 49 50-99 6-54 (65)
382 KOG4507 Uncharacterized conser 73.2 69 0.0015 28.7 10.9 101 132-234 617-717 (886)
383 PF09477 Type_III_YscG: Bacter 73.2 24 0.00052 23.3 8.2 15 169-183 81-95 (116)
384 PF09477 Type_III_YscG: Bacter 73.2 24 0.00052 23.3 8.3 81 30-117 19-99 (116)
385 PF06552 TOM20_plant: Plant sp 72.9 35 0.00076 25.1 9.7 75 34-117 52-137 (186)
386 PF14853 Fis1_TPR_C: Fis1 C-te 72.6 11 0.00023 21.2 3.9 23 268-290 7-29 (53)
387 KOG2066 Vacuolar assembly/sort 72.3 82 0.0018 29.2 22.1 151 24-185 363-533 (846)
388 COG5187 RPN7 26S proteasome re 71.9 50 0.0011 26.5 12.7 28 52-79 115-142 (412)
389 KOG3807 Predicted membrane pro 71.9 48 0.001 27.1 8.5 56 93-150 281-339 (556)
390 PF11663 Toxin_YhaV: Toxin wit 71.8 4.7 0.0001 27.7 2.7 29 100-130 108-136 (140)
391 PF11848 DUF3368: Domain of un 70.6 15 0.00033 20.0 4.8 11 283-293 23-33 (48)
392 PF09454 Vps23_core: Vps23 cor 69.8 21 0.00044 21.2 5.1 51 14-65 5-55 (65)
393 PF11848 DUF3368: Domain of un 69.5 16 0.00035 19.9 4.8 28 66-93 16-43 (48)
394 smart00386 HAT HAT (Half-A-TPR 69.2 11 0.00023 17.7 4.0 28 31-59 1-28 (33)
395 PRK10564 maltose regulon perip 68.9 13 0.00027 29.8 4.8 30 125-154 260-289 (303)
396 PF14561 TPR_20: Tetratricopep 68.4 28 0.00061 22.2 8.6 54 49-102 19-73 (90)
397 COG5108 RPO41 Mitochondrial DN 68.0 66 0.0014 29.2 9.2 75 162-239 33-115 (1117)
398 PRK11619 lytic murein transgly 67.0 1.1E+02 0.0023 28.3 26.8 118 205-325 254-374 (644)
399 KOG4567 GTPase-activating prot 66.9 43 0.00094 27.1 7.2 71 37-112 263-343 (370)
400 cd00280 TRFH Telomeric Repeat 66.8 50 0.0011 24.5 7.2 49 173-221 85-140 (200)
401 PF10345 Cohesin_load: Cohesin 66.7 1E+02 0.0023 28.1 29.2 178 5-183 44-251 (608)
402 KOG1464 COP9 signalosome, subu 66.6 64 0.0014 25.6 17.7 207 47-254 21-259 (440)
403 PF10345 Cohesin_load: Cohesin 66.3 1.1E+02 0.0023 28.0 28.1 183 36-219 40-252 (608)
404 PF11817 Foie-gras_1: Foie gra 66.1 39 0.00086 26.5 7.2 57 127-183 183-244 (247)
405 KOG4642 Chaperone-dependent E3 65.9 62 0.0013 25.2 10.4 118 167-288 20-143 (284)
406 COG5108 RPO41 Mitochondrial DN 65.7 59 0.0013 29.5 8.4 76 21-99 32-115 (1117)
407 PF09670 Cas_Cas02710: CRISPR- 65.6 84 0.0018 26.6 10.3 56 60-116 139-198 (379)
408 PF09868 DUF2095: Uncharacteri 65.6 31 0.00066 23.0 5.2 23 60-82 69-91 (128)
409 KOG2063 Vacuolar assembly/sort 65.6 1.3E+02 0.0028 28.8 20.8 26 20-45 507-532 (877)
410 KOG4567 GTPase-activating prot 65.4 62 0.0014 26.2 7.8 70 212-286 263-342 (370)
411 PF12926 MOZART2: Mitotic-spin 63.9 34 0.00074 21.5 7.7 64 51-116 9-72 (88)
412 PF12862 Apc5: Anaphase-promot 62.9 38 0.00081 21.7 6.6 54 27-80 8-69 (94)
413 COG2909 MalT ATP-dependent tra 62.8 1.4E+02 0.003 28.3 28.1 52 134-185 470-525 (894)
414 PRK10941 hypothetical protein; 62.7 78 0.0017 25.3 9.9 77 231-308 185-262 (269)
415 PF11817 Foie-gras_1: Foie gra 62.6 45 0.00098 26.1 7.0 52 268-319 184-240 (247)
416 COG3947 Response regulator con 62.6 81 0.0018 25.4 16.7 43 138-182 149-191 (361)
417 KOG3364 Membrane protein invol 61.8 52 0.0011 23.0 7.7 68 224-291 29-100 (149)
418 PRK11639 zinc uptake transcrip 61.6 61 0.0013 23.7 7.4 63 217-280 16-78 (169)
419 KOG1308 Hsp70-interacting prot 61.5 4.7 0.0001 32.7 1.3 92 64-157 126-217 (377)
420 PRK10941 hypothetical protein; 61.5 82 0.0018 25.1 10.3 77 55-132 184-261 (269)
421 PF07064 RIC1: RIC1; InterPro 61.2 81 0.0018 25.0 14.7 62 267-328 184-251 (258)
422 KOG1258 mRNA processing protei 61.1 1.2E+02 0.0027 27.1 24.4 125 156-283 296-421 (577)
423 KOG2908 26S proteasome regulat 60.9 94 0.002 25.6 9.2 67 197-263 80-156 (380)
424 KOG4642 Chaperone-dependent E3 60.5 80 0.0017 24.7 10.8 117 27-147 20-142 (284)
425 PF09670 Cas_Cas02710: CRISPR- 60.2 1.1E+02 0.0023 26.0 11.8 58 23-81 137-198 (379)
426 KOG0376 Serine-threonine phosp 59.9 53 0.0012 28.3 7.0 100 60-164 12-112 (476)
427 KOG2659 LisH motif-containing 59.5 79 0.0017 24.3 9.1 22 93-114 70-91 (228)
428 PF11838 ERAP1_C: ERAP1-like C 59.3 97 0.0021 25.3 22.1 132 138-274 146-287 (324)
429 PF04762 IKI3: IKI3 family; I 58.4 1.9E+02 0.004 28.2 11.8 28 124-151 814-843 (928)
430 KOG2396 HAT (Half-A-TPR) repea 58.3 1.3E+02 0.0028 26.4 28.4 97 225-324 457-557 (568)
431 PHA03100 ankyrin repeat protei 58.2 1.3E+02 0.0028 26.3 12.0 16 25-40 40-55 (480)
432 COG4003 Uncharacterized protei 57.6 43 0.00094 20.7 4.9 24 24-47 38-61 (98)
433 PF05944 Phage_term_smal: Phag 57.6 62 0.0013 22.5 7.2 98 4-106 35-132 (132)
434 KOG0686 COP9 signalosome, subu 56.8 1.2E+02 0.0027 25.7 13.8 62 124-185 152-215 (466)
435 KOG1839 Uncharacterized protei 56.7 2.2E+02 0.0047 28.5 11.1 130 156-285 972-1122(1236)
436 COG0790 FOG: TPR repeat, SEL1 56.5 1E+02 0.0022 24.7 21.9 25 242-266 252-276 (292)
437 PRK09462 fur ferric uptake reg 56.5 69 0.0015 22.7 7.2 63 216-279 6-69 (148)
438 PF04910 Tcf25: Transcriptiona 56.2 1.2E+02 0.0027 25.5 17.9 30 14-43 37-66 (360)
439 cd07153 Fur_like Ferric uptake 56.0 33 0.00071 22.9 4.6 44 59-102 7-50 (116)
440 KOG0376 Serine-threonine phosp 55.9 51 0.0011 28.4 6.3 107 22-132 9-115 (476)
441 smart00777 Mad3_BUB1_I Mad3/BU 55.9 64 0.0014 22.2 8.4 42 281-322 82-124 (125)
442 PF12862 Apc5: Anaphase-promot 55.9 52 0.0011 21.0 6.3 56 237-292 8-71 (94)
443 PF03745 DUF309: Domain of unk 55.6 40 0.00087 19.7 4.8 9 68-76 15-23 (62)
444 KOG2034 Vacuolar sorting prote 55.2 1.9E+02 0.0042 27.4 25.3 50 24-79 365-416 (911)
445 PF10475 DUF2450: Protein of u 55.1 1.1E+02 0.0024 24.7 8.9 109 128-247 104-217 (291)
446 PF04762 IKI3: IKI3 family; I 55.0 2.1E+02 0.0046 27.9 12.5 133 137-288 793-927 (928)
447 KOG0991 Replication factor C, 55.0 1E+02 0.0022 24.1 11.6 135 128-272 136-282 (333)
448 KOG3677 RNA polymerase I-assoc 54.7 1.4E+02 0.003 25.6 9.1 60 125-184 238-299 (525)
449 cd07153 Fur_like Ferric uptake 54.5 40 0.00086 22.5 4.8 49 232-280 5-53 (116)
450 KOG0687 26S proteasome regulat 54.1 1.2E+02 0.0027 24.9 13.8 97 123-221 105-210 (393)
451 PRK14958 DNA polymerase III su 52.9 1.7E+02 0.0037 26.1 10.7 30 89-119 248-277 (509)
452 KOG2066 Vacuolar assembly/sort 52.6 2E+02 0.0044 26.9 13.8 25 265-289 508-532 (846)
453 COG0790 FOG: TPR repeat, SEL1 52.3 1.2E+02 0.0026 24.3 23.1 85 210-301 173-276 (292)
454 KOG3364 Membrane protein invol 51.9 81 0.0017 22.1 8.9 66 86-151 31-100 (149)
455 PF07720 TPR_3: Tetratricopept 51.6 32 0.00069 17.4 4.0 18 302-319 6-23 (36)
456 PF01475 FUR: Ferric uptake re 51.6 34 0.00073 23.1 4.1 45 57-101 12-56 (120)
457 PF10366 Vps39_1: Vacuolar sor 51.6 70 0.0015 21.3 7.9 27 124-150 41-67 (108)
458 KOG1308 Hsp70-interacting prot 51.3 12 0.00026 30.5 2.1 93 98-192 125-217 (377)
459 PF01475 FUR: Ferric uptake re 50.6 36 0.00077 23.0 4.1 32 233-264 13-44 (120)
460 PF11123 DNA_Packaging_2: DNA 50.5 56 0.0012 19.8 5.3 36 29-65 9-44 (82)
461 PF00244 14-3-3: 14-3-3 protei 50.5 1.2E+02 0.0026 23.7 11.4 163 93-255 7-197 (236)
462 PRK09857 putative transposase; 50.5 1.4E+02 0.0029 24.3 8.6 68 53-121 207-274 (292)
463 PF10475 DUF2450: Protein of u 50.4 1.4E+02 0.0029 24.3 9.7 116 56-182 102-222 (291)
464 PF04910 Tcf25: Transcriptiona 49.5 1.6E+02 0.0035 24.8 20.6 28 86-113 39-66 (360)
465 PRK09857 putative transposase; 49.3 1.4E+02 0.0031 24.2 9.2 63 127-190 211-273 (292)
466 COG5159 RPN6 26S proteasome re 49.2 1.4E+02 0.003 24.1 14.7 55 57-111 8-69 (421)
467 COG5187 RPN7 26S proteasome re 49.0 1.4E+02 0.0031 24.1 12.9 26 158-183 116-141 (412)
468 PF04090 RNA_pol_I_TF: RNA pol 49.0 1.1E+02 0.0025 23.0 7.2 60 229-289 43-103 (199)
469 PRK14962 DNA polymerase III su 48.7 1.9E+02 0.0041 25.5 13.5 33 90-123 247-279 (472)
470 KOG2297 Predicted translation 48.4 1.5E+02 0.0033 24.2 17.5 19 263-281 322-340 (412)
471 KOG2297 Predicted translation 48.1 1.5E+02 0.0033 24.2 14.9 21 227-247 321-341 (412)
472 KOG2422 Uncharacterized conser 48.1 2.1E+02 0.0045 25.8 16.4 138 14-151 281-448 (665)
473 KOG0403 Neoplastic transformat 48.1 1.9E+02 0.004 25.2 17.1 61 231-292 513-573 (645)
474 KOG0890 Protein kinase of the 47.1 4.1E+02 0.0089 28.9 20.8 62 227-291 1670-1731(2382)
475 PF04090 RNA_pol_I_TF: RNA pol 46.9 1.2E+02 0.0027 22.8 6.9 27 20-46 44-70 (199)
476 KOG0687 26S proteasome regulat 45.7 1.7E+02 0.0037 24.1 15.3 95 193-289 105-208 (393)
477 PRK14963 DNA polymerase III su 45.2 2.2E+02 0.0049 25.3 9.6 26 92-118 247-272 (504)
478 PF10255 Paf67: RNA polymerase 44.5 2E+02 0.0044 24.6 12.9 59 126-184 126-191 (404)
479 COG5191 Uncharacterized conser 43.7 90 0.002 25.5 5.6 77 13-91 103-180 (435)
480 KOG1839 Uncharacterized protei 43.4 3.6E+02 0.0077 27.1 12.5 157 167-323 942-1125(1236)
481 cd08332 CARD_CASP2 Caspase act 43.4 86 0.0019 20.0 7.7 33 66-102 48-80 (90)
482 PRK06645 DNA polymerase III su 42.6 2.5E+02 0.0054 25.1 9.6 18 101-118 271-288 (507)
483 PRK13342 recombination factor 40.9 2.4E+02 0.0051 24.3 18.0 60 205-264 243-307 (413)
484 KOG3636 Uncharacterized conser 40.7 2.4E+02 0.0052 24.4 15.5 197 40-238 42-271 (669)
485 COG4259 Uncharacterized protei 40.5 1E+02 0.0023 20.1 6.7 43 107-149 57-99 (121)
486 PF09986 DUF2225: Uncharacteri 40.2 1.7E+02 0.0037 22.4 10.7 104 202-305 87-208 (214)
487 PRK13342 recombination factor 39.4 2.5E+02 0.0054 24.2 19.3 21 136-156 244-264 (413)
488 PRK13341 recombination factor 39.4 3.4E+02 0.0073 25.7 15.6 145 1-150 173-360 (725)
489 PF04348 LppC: LppC putative l 39.3 9.9 0.00021 33.7 0.0 88 198-285 30-121 (536)
490 PRK14956 DNA polymerase III su 39.0 2.8E+02 0.006 24.6 10.4 36 86-121 247-282 (484)
491 PF11838 ERAP1_C: ERAP1-like C 38.8 2.1E+02 0.0047 23.3 20.6 111 103-217 146-262 (324)
492 PF07575 Nucleopor_Nup85: Nup8 38.1 3.1E+02 0.0067 24.9 19.7 26 17-43 149-174 (566)
493 PRK08691 DNA polymerase III su 38.0 3.4E+02 0.0075 25.4 11.5 74 9-85 192-278 (709)
494 PF00772 DnaB: DnaB-like helic 37.9 1.1E+02 0.0024 19.7 5.9 10 45-54 52-61 (103)
495 COG4976 Predicted methyltransf 37.8 98 0.0021 24.1 4.8 56 26-82 4-59 (287)
496 PF11768 DUF3312: Protein of u 37.1 3.1E+02 0.0067 24.6 10.9 61 161-221 412-473 (545)
497 COG2178 Predicted RNA-binding 37.0 1.8E+02 0.0039 21.9 9.1 17 132-148 39-55 (204)
498 PF04190 DUF410: Protein of un 36.8 2.2E+02 0.0047 22.7 16.6 25 121-145 89-113 (260)
499 KOG4521 Nuclear pore complex, 36.7 4.5E+02 0.0097 26.3 13.1 56 194-249 985-1043(1480)
500 PF02847 MA3: MA3 domain; Int 36.6 1.3E+02 0.0027 19.9 9.4 62 21-84 6-69 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-59 Score=415.29 Aligned_cols=325 Identities=20% Similarity=0.300 Sum_probs=316.9
Q ss_pred ChHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 1 MWKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 1 ~~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
++++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 020193 81 KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD--KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158 (329)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (329)
.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 99999999999999999999999999999999976 5789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (329)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHH
Q 020193 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
+.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 020193 319 IELLEVS 325 (329)
Q Consensus 319 ~~~~~~~ 325 (329)
+++.|.+
T Consensus 776 l~~~M~k 782 (1060)
T PLN03218 776 LLSQAKE 782 (1060)
T ss_pred HHHHHHH
Confidence 9998865
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.6e-57 Score=403.27 Aligned_cols=311 Identities=16% Similarity=0.259 Sum_probs=305.3
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
||..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH--cCCccCHHhHHHHHHHHHccCC
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK--QGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 020193 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
+++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++++.|..
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-52 Score=368.65 Aligned_cols=310 Identities=17% Similarity=0.262 Sum_probs=224.4
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.+++..|.+.|+.||+.+|+.++..|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.
T Consensus 143 ~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 143 KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 46778888888888888999999999999999999999988864 67888999999999999999999999999887
Q ss_pred CCccChHHHH-----------------------------------HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH
Q 020193 82 GFVPDKRTYA-----------------------------------ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126 (329)
Q Consensus 82 ~~~~~~~~~~-----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (329)
|+.||..+|+ .++.+|++.|++++|.++|+.|. .+|..+|+
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n 294 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWN 294 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHH
Confidence 7777666554 44555555555666666665553 24556666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 286 (329)
++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+
T Consensus 375 ~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 375 RMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666666666642 46667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHh-CCCCCChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 287 EMTE-MGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 287 ~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
.|.+ .|+.|+..+|+.++++|++.|++++|.++++.+
T Consensus 451 ~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 451 SMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 7764 567777777777777777777777777766543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-51 Score=360.38 Aligned_cols=304 Identities=18% Similarity=0.271 Sum_probs=218.1
Q ss_pred hhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChH
Q 020193 9 KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88 (329)
Q Consensus 9 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (329)
.+.|+.||..+|+.|+..|++.|++++|.++|+.|.. +|..+||.++.+|++.|++++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 3344444555556666777777777777777777643 456777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
||+.++.+|++.|++++|.++++.|.+.|++|+..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777653 46677777777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccCChhHHH
Q 020193 169 KSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (329)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 7777777777777777777777777777777777777777777777777764 467777777777777777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
+++++| +..|+..+|+.++.+|...|+++.|..+++++.+. .| +..+|..|+..|.+.|++++|.++++.|.+
T Consensus 483 ~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 483 AMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 776654 35677777777777777777777777777776543 33 356777777777777777777777777654
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-50 Score=361.98 Aligned_cols=314 Identities=17% Similarity=0.213 Sum_probs=228.5
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..+.+.|+.||..+||.|+.+|++.|++++|.++|++|.
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--
Confidence 466777777777777777777777777777777777777777777777777777777777777777777777776664
Q ss_pred CCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 82 GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
.||..+|+.++.+|.+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 346666777777777777777777777777666666777777777777766666666666666666666666666666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE--------------------- 220 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------- 220 (329)
.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|..+|++|..
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 666666666666666666666543 3344444444444444444444444444432
Q ss_pred -------------CCC------------------------------CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020193 221 -------------DGH------------------------------KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257 (329)
Q Consensus 221 -------------~~~------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (329)
.|+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|
T Consensus 505 l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 111 3456677888888888999999999999999999
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|.+.|++++|.++++.|
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 99999999999999999999999999999998 6889999999999999999999999999998876
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5e-50 Score=361.95 Aligned_cols=315 Identities=17% Similarity=0.159 Sum_probs=220.5
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (329)
+..|.+.|+.||+.+|+.|+.+|++.|++++|.++|+.|.. ||..+||++|.+|++.|++++|+++|.+|.+.|+.
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 33444444445555556667777777777777777777753 45677777777777777777777777777777777
Q ss_pred cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHH
Q 020193 85 PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 164 (329)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 77777777777777777777777777777777777777666666666666666666666666664 24556666666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 020193 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (329)
.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666666666666666666666666666666666666665555555555555555555555555
Q ss_pred HHHHHHHHHHHc------------------------------CC------------------------------------
Q 020193 245 DAFCFFSEMKIK------------------------------GH------------------------------------ 258 (329)
Q Consensus 245 ~a~~~~~~~~~~------------------------------~~------------------------------------ 258 (329)
+|.++|++|.+. ++
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 555544443221 23
Q ss_pred -----------------------------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 020193 259 -----------------------------PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309 (329)
Q Consensus 259 -----------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 309 (329)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 345566788888889999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhhhc
Q 020193 310 CGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 310 ~g~~~~a~~~~~~~~~~~ 327 (329)
.|.+++|.++++.|.+..
T Consensus 602 ~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred cChHHHHHHHHHHHHHHh
Confidence 999999999999987543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=3.4e-24 Score=178.66 Aligned_cols=296 Identities=13% Similarity=0.074 Sum_probs=247.8
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC---hHHHHHHHHHHHh
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD---KRTYAILVNAWCS 99 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 99 (329)
....+...|++++|...|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999886 67788999999999999999999999999987542222 2567888999999
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH----HhHHHHHHHHHccCCHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL----ETFNSLIETICKSGEVEF 175 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 175 (329)
.|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999998764 456788999999999999999999999999887544322 245567778889999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
|...++++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987653 346678888899999999999999999998764433356788899999999999999999999987
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---CCchhHHHHHHHHHhh
Q 020193 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN---CGKHDLAEKIELLEVS 325 (329)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 325 (329)
. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++.+.+
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 6 467777788999999999999999999998875 5888888888887764 5688898888776654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.1e-23 Score=193.97 Aligned_cols=301 Identities=14% Similarity=0.060 Sum_probs=215.7
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+.++..|..+...+...|++++|...|+.+.+.+ +.+...+..+..++...|++++|...|+++.+.. +.+..++..+
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 675 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGL 675 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4456666666666666677777777666666554 4556666666666666677777777776666543 2245566666
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++++...+ |+..++..+..++.+.|++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 677777777777777777766654 4455666667777777777777777777777663 3345666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
++|.+.++.+.+..+ .+...+..+...|...|++++|...|+++.+..+ .+..+++.+...+...|+ ++|+..++++
T Consensus 753 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 753 AEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 777777777776543 5666777777788888888888888888777643 366777778888888888 7788888887
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
.... +.+..++..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|++++|.++++.+.
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 830 LKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7652 335566777788888889999999999999887643 78888889999999999999999888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=8.4e-24 Score=176.31 Aligned_cols=290 Identities=15% Similarity=0.103 Sum_probs=240.6
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc---cHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ---CVLLYNSLLFALCEVKLFHGAYALIRRM 78 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (329)
.+.|+.+.+.+ +.+..++..+...+...|++++|..+++.+......+ ....+..+...|.+.|++++|..+|+++
T Consensus 55 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 55 IDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677777664 4567889999999999999999999999998754222 1356888999999999999999999999
Q ss_pred HHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 79 IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP----VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
.+.. +++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.++++.+...
T Consensus 134 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 211 (389)
T PRK11788 134 VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP- 211 (389)
T ss_pred HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-
Confidence 8763 34678899999999999999999999999987652221 12345677788899999999999999988743
Q ss_pred cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 020193 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234 (329)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (329)
.+...+..+...+.+.|++++|.+.++++...++.....++..++.+|...|++++|...++++.+.. |+...+..++
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la 289 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALA 289 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHH
Confidence 25667888889999999999999999999876543345678899999999999999999999998864 5666678899
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHhCCCCCChh
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR---GGRFVEAANYLVEMTEMGLTPISR 298 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~ 298 (329)
..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998876 6888899988887664 568999999999999877777655
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.4e-22 Score=186.72 Aligned_cols=304 Identities=14% Similarity=0.054 Sum_probs=165.1
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+.++.++..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++++...+. .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHH
Confidence 4566677777777777777777777777776654 45556666666666666777777777766665432 245555556
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
...+.+.|+.++|..+++++...+ +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+..++...|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 666666666666666666554443 3334444455555555555555555555555432 22444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------------------
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH------------------------------ 223 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------ 223 (329)
++|...|+.+.+..+ .+...+..+..++.+.|++++|...++++.+...
T Consensus 618 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555544322 2334444455555555555555555555444321
Q ss_pred ---CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 224 ---KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300 (329)
Q Consensus 224 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 300 (329)
+.+...+..+...+...|++++|...++.+... .|+..++..+..++.+.|++++|.+.++.+.+.. +.+...+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 123334444444455555555555555554443 2333444445555555555555555555555432 2345555
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 301 DLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
..+...|...|++++|.+.++....
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555556666666666666555544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2e-20 Score=163.73 Aligned_cols=306 Identities=15% Similarity=0.094 Sum_probs=250.6
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+-++..+..++......|++++|.+.|+++.... |.+...+..+...+...|++++|...++++.... +.+...+..+
T Consensus 73 p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~l 150 (656)
T PRK15174 73 KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALH 150 (656)
T ss_pred CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4456667777788888999999999999999887 7788899999999999999999999999998763 3356788889
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++......+..++...|++
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 999999999999999999887654 2333334333 35788999999999999988775444555556667888999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE----AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (329)
++|...+++.....+ .+...+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|...
T Consensus 229 ~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~ 306 (656)
T PRK15174 229 QEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPL 306 (656)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999988754 457788889999999999985 89999999886533 677889999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
+++..... +.+...+..+..++.+.|++++|...++.+.+.. |+. ..+..+..++...|++++|.+.++...+.++
T Consensus 307 l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 307 LQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 99998863 3356677888899999999999999999998754 443 3444567789999999999999998776653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=2e-19 Score=157.47 Aligned_cols=300 Identities=8% Similarity=0.009 Sum_probs=248.9
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
...++..+.+.|++++|..+++...... |-+...+..++.+....|++++|...++++....+ .+...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence 4456677889999999999999998876 66677788888888899999999999999998743 366788889999999
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 179 (329)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998864 456778888999999999999999999988776443 33334333 347889999999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH----HHHHHHHHHH
Q 020193 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD----AFCFFSEMKI 255 (329)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 255 (329)
++.+.+....++...+..+..++...|++++|...++++.+.... +...+..+...+...|++++ |...+++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 999887654455555666678889999999999999999887533 57778889999999999986 8999999987
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 256 KGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 256 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++......
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 63 4467788999999999999999999999998764 2346678888999999999999999988776543
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.7e-18 Score=151.90 Aligned_cols=309 Identities=15% Similarity=0.055 Sum_probs=208.3
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHH--------------
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRM-------------- 78 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------------- 78 (329)
+.|++..|..+..+|.+.|++++|++.++...+.+ |.+...|..+..++...|++++|+.-|...
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 45677788888888888899999998888888776 666777777887887778777776543222
Q ss_pred --------------------------------------------------------------------------------
Q 020193 79 -------------------------------------------------------------------------------- 78 (329)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (329)
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence
Q ss_pred ------HHcC-Ccc-ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 79 ------IRKG-FVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 79 ------~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
...+ ..| ....+..+...+...|++++|+..+++..... +.....|..+...+...|++++|...+++..+
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 393 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 011 12234444455556677777777777776653 22344666677777777777777777777766
Q ss_pred cCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 151 QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230 (329)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (329)
.... +..++..+...+...|++++|...|++..+..+ .+...+..+..++.+.|++++|...|++..+... .+...+
T Consensus 394 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~ 470 (615)
T TIGR00990 394 LNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVY 470 (615)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 6432 566777777777778888888888877776543 3455666777777788888888888887776532 246677
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCChh------hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP------VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 304 (329)
+.+...+...|++++|...|++........+.. .++.....+...|++++|.+++++..+.. +.+...+..+.
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 777788888888888888888877652211111 11112222334688888888888877654 22345678888
Q ss_pred HHHHhCCchhHHHHHHHHHhhhc
Q 020193 305 DGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..+.+.|++++|.+.++...++.
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHh
Confidence 89999999999998888776653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1e-17 Score=147.11 Aligned_cols=302 Identities=12% Similarity=0.000 Sum_probs=239.8
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+......+.+.|++++|+..|++..... |+...|..+..+|.+.|++++|++.++...+... .+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 35567788899999999999999998764 6788999999999999999999999999998643 25678888999999
Q ss_pred hcCchhHHHHHHHHHHhCC-----------------------------CCCCcccHHHHHHH------------------
Q 020193 99 SSGKMREAQEFLQEMSDKG-----------------------------FNPPVRGRDLLVQG------------------ 131 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~------------------ 131 (329)
..|++++|+..+......+ .+++...+..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999987654432111 01111111111110
Q ss_pred ------------H------HhcCChHHHHHHHHHHHHcC-Ccc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 020193 132 ------------L------LNAGYLESAKQMVNKMIKQG-FVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191 (329)
Q Consensus 132 ------------~------~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 191 (329)
. ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++.....+ ..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Confidence 0 11257889999999988764 223 456788888889999999999999999987643 34
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 020193 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271 (329)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (329)
...|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...|++..... +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 66888889999999999999999999987643 357888999999999999999999999998863 3466778888899
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 272 CGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+.+.|++++|...+++..+.. +.+...+..+..++...|++++|.+.++....+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999988653 3357889999999999999999999998877764
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=7.1e-17 Score=150.78 Aligned_cols=305 Identities=13% Similarity=0.063 Sum_probs=158.3
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc-cHHHHH------------HHHHHHHhcchHHHHHHHHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYN------------SLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
|-++..+..+...+.+.|++++|...|++..+..... ....|. .....+.+.|++++|...|+++.+
T Consensus 300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3356677777777777777777777777776544111 111111 123345566777777777777776
Q ss_pred cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH--------------------------------
Q 020193 81 KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL-------------------------------- 128 (329)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------------------------- 128 (329)
... .+...+..+..++...|++++|++.|++..+.. +.+...+..+
T Consensus 380 ~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 380 VDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 532 245556667777777777777777777776543 2222222222
Q ss_pred ----------HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 020193 129 ----------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198 (329)
Q Consensus 129 ----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (329)
...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...++++.+..+ .+...+..+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~ 535 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAY 535 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 22334567777777777777666433 455666677777777777777777777665332 111111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---------------------------------------CCCCChhhHHHHHHHHHc
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVED---------------------------------------GHKPFPSLYAPIIKGMFR 239 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~~ 239 (329)
...+...++.++|...++.+... ..+.+...+..+...+.+
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 11112222222222222111000 011222333444455555
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHH
Q 020193 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..++...|++++|.++
T Consensus 616 ~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555555555555442 2244455555555555555555555555544321 11233444455555555555555555
Q ss_pred HHHHh
Q 020193 320 ELLEV 324 (329)
Q Consensus 320 ~~~~~ 324 (329)
++...
T Consensus 694 ~~~al 698 (1157)
T PRK11447 694 FNRLI 698 (1157)
T ss_pred HHHHh
Confidence 55443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.5e-18 Score=139.40 Aligned_cols=306 Identities=13% Similarity=0.114 Sum_probs=183.6
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHH-HH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY-AI 92 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ 92 (329)
+--.++|..+.+.+...|++++|+..++.+.+.. |..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3346789999999999999999999999999887 778899999999999999999999999888765 3433222 22
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------------
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF------------------- 153 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------- 153 (329)
+.......|+.++|...+.+..+.. +--...|+.|.-.+...|+...|++.|++..+...
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 2333334455555555554444432 11233444444444444444444444444443311
Q ss_pred -------------cc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 154 -------------VL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 154 -------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
.| ....+..+...|...|..+-|+..|++..+..+ .-...|+.|..++-..|+..+|.+.|.+..
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 11 233444444445555555555555555554322 124456666666666666666666666655
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hh
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-SR 298 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~ 298 (329)
..... .....+.|...|...|.++.|..+|....+. .+--...++.|...|-+.|++++|+..+++.+. +.|+ ..
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 54221 3445555666666666666666666665553 111234556666666666666666666666653 4455 45
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
.|+.+...|...|+.+.|.+-+......++
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 666666666666666666666666655543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=9.1e-17 Score=150.05 Aligned_cols=300 Identities=11% Similarity=-0.001 Sum_probs=194.0
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--------cC
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--------PD 86 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~ 86 (329)
.++..+..+...+...|++++|.+.|+++.+.. |.+...+..+...+. .++.++|..+++.+...... ..
T Consensus 383 ~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~ 460 (1157)
T PRK11447 383 TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQ 460 (1157)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 345556666667777777777777777766654 444444444444432 22334444443332211000 00
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHH---
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL--- 163 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 163 (329)
...+..+...+...|++++|.+.+++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~ 538 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLY 538 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 1122333444555667777777777666653 334455556666667777777777777666654321 22222222
Q ss_pred -----------------------------------------HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 020193 164 -----------------------------------------IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202 (329)
Q Consensus 164 -----------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (329)
...+...|+.++|..+++. .+.+...+..+...+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWA 613 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence 3334455555555555541 224556677888999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 020193 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (329)
.+.|++++|...|+++.+..+. +...+..++..+...|++++|.+.++.+... -+.+...+..+..++...|++++|.
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999987543 6788899999999999999999999988765 2235566777888899999999999
Q ss_pred HHHHHHHhCCCC--C---ChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 283 NYLVEMTEMGLT--P---ISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 283 ~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
++++.+...... | +...+..+...+...|++++|.+.++....
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999864322 2 234667778899999999999999887753
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=4.7e-18 Score=138.72 Aligned_cols=314 Identities=14% Similarity=0.115 Sum_probs=237.6
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCC---------------------------------Cc
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC---------------------------------QQ 50 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------------~~ 50 (329)
+++.+.+.. +-..+.|-.+..++...|+.+.|.+.|....+.+. |-
T Consensus 138 ~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 138 LYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc
Confidence 344444433 23456677777777777777777777776665540 11
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC-hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
-...|..|...+-.+|+...|++.|++..... |+ ...|-.|...|...+.+++|...+.+..... +.....+..+.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla 293 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLA 293 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceE
Confidence 12234444445555666666666666665542 22 3456677777777777777777777776553 33455666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (329)
-.|...|..+-|+..+++..+.... =...|+.|..++-..|++.+|.+.|.+.....+ ......+.|...|...|.++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccch
Confidence 7778889999999999998887432 367899999999999999999999999987643 34678889999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR-PVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
.|..+|....+-... -...++.|...|-+.|++++|+..+++..+. .|+. ..|+.+...|-..|+.+.|.+.+.+.
T Consensus 372 ~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 372 EATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 999999998875322 3567899999999999999999999999874 5654 68999999999999999999999999
Q ss_pred HhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 289 TEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 289 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
+..+ |. ...++.|...|..+|...+|+.-++....+++
T Consensus 449 I~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 449 IQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 8654 54 67899999999999999999999998887764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=7.9e-16 Score=137.81 Aligned_cols=308 Identities=11% Similarity=0.064 Sum_probs=181.6
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+.+...+..+...+...|++++|.++|+...+.. |.+...+..+...+...|++++|...++++.+.. +.+.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 3445567777777888888888888888877765 5666777777777777888888888888777653 22444 6677
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHH---------------------------
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN--------------------------- 146 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------------------------- 146 (329)
..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|++.++
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 777777788888888887777654 3334444455555555555444443333
Q ss_pred -------------------HHHHc-CCccCHH-hHH----HHHHHHHccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHH
Q 020193 147 -------------------KMIKQ-GFVLDLE-TFN----SLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIP 200 (329)
Q Consensus 147 -------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 200 (329)
.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+..
T Consensus 202 ~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~ 280 (765)
T PRK10049 202 TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVAS 280 (765)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHH
Confidence 22221 1111111 010 0122334556777777777777665431 221 2222455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----------CCCh---h
Q 020193 201 AVSKAGMIDEAFRLLHNLVEDGHKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----------PPNR---P 263 (329)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~ 263 (329)
+|...|++++|...|+++.+..... .......+..++...|++++|..+++.+..... .|+. .
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6777777777777777765542211 123344455566677777777777777665410 1121 2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.+..+...+...|++++|+++++++.... +.+...+..+...+...|++++|++.++....++
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 33445556666777777777777766543 3345666666666777777777777766665544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=7.6e-16 Score=137.92 Aligned_cols=318 Identities=8% Similarity=-0.049 Sum_probs=234.9
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
++++...+.. |.++..+..+...+...|++++|+..++++.+.. |.+.. +..+..++...|+.++|+..++++.+..
T Consensus 70 ~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 70 TLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3444444333 5567888899999999999999999999998875 67777 8899999999999999999999999874
Q ss_pred CccChHHHHHHHHHHHhcCchhHHH----------------------------------------------HHHHHHHhC
Q 020193 83 FVPDKRTYAILVNAWCSSGKMREAQ----------------------------------------------EFLQEMSDK 116 (329)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~----------------------------------------------~~~~~~~~~ 116 (329)
+. +...+..+..++...+..+.|+ +.++.+.+.
T Consensus 147 P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 147 PQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 33 4555555666665555555444 334444322
Q ss_pred -CCCCCcc-cHH----HHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 020193 117 -GFNPPVR-GRD----LLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC 189 (329)
Q Consensus 117 -~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 189 (329)
...|+.. .+. ..+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|...|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1112211 111 1133456779999999999999987532 322 2233577899999999999999998765432
Q ss_pred C---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHccCChhHHHHHHHH
Q 020193 190 A---DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-----------KPF---PSLYAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 190 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
. .......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|+..+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 134566677788999999999999999887532 123 22455677888999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 253 MKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+... .+.+...+..+...+...|++++|++.+++..+.. +-+...+......+.+.|++++|+++++...+..
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9876 45577888999999999999999999999998754 2346677778888999999999999998877654
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=4.6e-16 Score=121.85 Aligned_cols=308 Identities=17% Similarity=0.220 Sum_probs=213.9
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHH
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (329)
.|-++.+|..+|..+++--..+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|......||..|+|.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 466889999999999999999999999999987777999999999987755432 3788999999999999999999
Q ss_pred HHHHHHhcCchhH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCcc----CHHh
Q 020193 93 LVNAWCSSGKMRE----AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES-AKQMVNKMIK----QGFVL----DLET 159 (329)
Q Consensus 93 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~ 159 (329)
++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. ..+.| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999999888754 4444444443 22222 4455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 020193 160 FNSLIETICKSGEVEFCVEMYYSVCKLG----LCAD---VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAP 232 (329)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 232 (329)
|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.-...|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 6677778888888887777765553221 1222 12345556666666677777777777776656666676666
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCC-----------------------------------------------------
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIKGHP----------------------------------------------------- 259 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------------------------------------------- 259 (329)
++++....|.++-.-++|.++...|..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 777666666666666666665554421
Q ss_pred -CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 260 -PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL----TPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 260 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
......+.+.-.+.+.|+.++|.+++..+.+.+- .|.......+++.-.+......|..+++.+.
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 1222334444455667777777777766643322 1222333355555566666666666666553
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=9.2e-16 Score=127.19 Aligned_cols=284 Identities=10% Similarity=0.034 Sum_probs=220.5
Q ss_pred cCchhHHHHHHHHhhhcCCCccHHHHH-HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH--HHHHHHHhcCchhHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQQCVLLYN-SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA--ILVNAWCSSGKMREA 106 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 106 (329)
.|+++.|.+......+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 599999998888766542 2333333 3345558899999999999999875 45543333 346788899999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH-------HhHHHHHHHHHccCCHHHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL-------ETFNSLIETICKSGEVEFCVEM 179 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 179 (329)
.+.++.+.+.. |-++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998876 567788899999999999999999999999988655322 1233334444445566677777
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 020193 180 YYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259 (329)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (329)
++.+.+. .+.++.....+...+...|+.++|..++++..+. .|+... .++.+....++.+++.+..+...+. .+
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CC
Confidence 7766443 2357778889999999999999999999998874 344432 2344445669999999999998876 34
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+..++.+.|+.++|.+.++....+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677889999999999999999999999975 589999999999999999999999999876543
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=1.5e-15 Score=126.50 Aligned_cols=292 Identities=10% Similarity=0.017 Sum_probs=214.0
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
..|+++.|.+.+....+.. +.....+-....+....|+++.|.+.+.+..+....++..........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 5799999999998887764 223344455567788899999999999998765323222334445788889999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH-HHHHHH---HccCCHHHHHHHHHHHH
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN-SLIETI---CKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~ 184 (329)
.++.+.+.. |-++.....+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999886 557778889999999999999999999999998755 333332 111211 22233333344555554
Q ss_pred HcCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 185 KLGLC---ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 185 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
+..+. .+...+..+...+...|+.++|.+++++..+......... ...........++.+.+.+.++...+. .+-
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~ 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDD 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCC
Confidence 43321 3778888999999999999999999999988643322111 111222234457788899999888765 233
Q ss_pred Ch--hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 261 NR--PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 261 ~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44 56678899999999999999999964444557898889999999999999999999988753
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=8.4e-19 Score=139.08 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=61.4
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcC-CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFN-CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
+...+.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455555555555555553332221 1333444444444444555555555555555544322 33344444444 4555
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CccCHHhHHHHHHHHHccCCHHHHHHHH
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMY 180 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 180 (329)
++++|.++++...+.. +++..+...+..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555554443322 333444445555555555555555555544321 1223444444445555555555555555
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
++..+..+ .|......++..+...|+.+++..++....+.. +.++..+..+..++...|+.++|..++++.... .+.
T Consensus 170 ~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~ 246 (280)
T PF13429_consen 170 RKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD 246 (280)
T ss_dssp HHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred HHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence 55544332 233444444444555555555444444444332 223334444455555555555555555554443 122
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 261 NRPVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
|+.....+..++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444455555555555555544443
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=8.5e-16 Score=120.41 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=234.1
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHccC--chhHH-HHHHHHhhhcC-------------------CCccHHHHHHHHHH
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGKHG--LVDNA-VEVFNKCTAFN-------------------CQQCVLLYNSLLFA 61 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a-~~~~~~~~~~~-------------------~~~~~~~~~~l~~~ 61 (329)
+++.|++.|++.++..-..|++.-+-.+ ++.-| .+.|-.|.+.| .|.+..++..+|.+
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI~G 216 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSIMIAG 216 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHHHHHH
Confidence 5788999999999988777766544222 22111 12222222221 35677899999999
Q ss_pred HHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH-
Q 020193 62 LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES- 140 (329)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 140 (329)
+++--..+.|.++|++-.....+.+..+||.+|.+..-..+ .+++.+|.+..+.||..|+|+++++..+.|+++.
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 99999999999999999888778899999999977554333 6788999999999999999999999999998765
Q ss_pred ---HHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH-HHHHHHHHHHc----CCCC----chhhHHHHHHHHHhcCCH
Q 020193 141 ---AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF-CVEMYYSVCKL----GLCA----DVSTYKILIPAVSKAGMI 208 (329)
Q Consensus 141 ---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~ 208 (329)
|.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++... ..+| |...|...+..|.+..+.
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~ 372 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL 372 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH
Confidence 55778889999999999999999999999888644 55555555432 2222 455677888899999999
Q ss_pred HHHHHHHHHHHhC----CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 020193 209 DEAFRLLHNLVED----GHKPF---PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 209 ~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 281 (329)
+.|.++..-+... -+.|+ ..-|..+....++....+.-...|+.|...-.-|+..+...++++....|+++-.
T Consensus 373 ~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 373 ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhH
Confidence 9999887766533 11222 2246667777888888999999999999887889999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 020193 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 311 (329)
.++|.+++..|...+...-..++..+++..
T Consensus 453 pRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 453 PRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 999999998886666666666666666655
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=1.4e-18 Score=137.78 Aligned_cols=260 Identities=18% Similarity=0.184 Sum_probs=115.6
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcC-CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKG-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
.+...+.+.|++++|++++.+..... .+.|...|..+...+...++++.|.+.++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56888999999999999997655443 23355566667778888999999999999998876 3356677777777 799
Q ss_pred CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcCCHHHHHHH
Q 020193 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYKILIPAVSKAGMIDEAFRL 214 (329)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 214 (329)
+++++|.+++.+..+.. +++..+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877653 466778888899999999999999999987543 345777888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 020193 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294 (329)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 294 (329)
+++..+..+. |......++..+...|+.+++..+++...... +.|+..+..+..++...|+.++|..++++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999987533 57788899999999999999999998887763 5577788899999999999999999999988754 4
Q ss_pred CChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 295 PISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 295 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
.|......+.+++...|+.++|.++++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 47889999999999999999999997654
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=2.2e-14 Score=126.97 Aligned_cols=302 Identities=11% Similarity=0.014 Sum_probs=181.3
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhc
Q 020193 21 SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS 100 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (329)
..+...+...|++++|+++|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 333556777788888888888887776 666777777777777788888888888777665 34444454444444445
Q ss_pred CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHH-----------------------------------
Q 020193 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMV----------------------------------- 145 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----------------------------------- 145 (329)
++..+|++.++++.+.. |.+...+..+..++.+.|-...|.++.
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 55555777777777654 334444444444444444322222222
Q ss_pred -------------HHHHHc-CCccCH-Hh----HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 146 -------------NKMIKQ-GFVLDL-ET----FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 146 -------------~~~~~~-~~~~~~-~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
+.+... +..|.. .. ..-.+-++...++..++++.|+.+...+.+....+-..+..+|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 222211 111211 11 11233455667777777777777776665444556677777777777
Q ss_pred CHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----------CCCh---hhHHH
Q 020193 207 MIDEAFRLLHNLVEDGH-----KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----------PPNR---PVYTM 267 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~ 267 (329)
++++|+.+|+.+..... .++......|.-++...+++++|..+++.+.+... .||. ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 77777777777755321 22233345677777777777777777777766311 1222 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 268 LITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
++..+.-.|+..+|++.++++.... +-|......+.+.+...|.+.+|++.++....+.
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 4555667777777777777776543 3466677777777777777777777776655443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.1e-14 Score=124.63 Aligned_cols=300 Identities=13% Similarity=0.043 Sum_probs=209.0
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.++..+...|+.++|+..+++..... +........+...+...|++++|+++|+++.+.... +...+..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC
Confidence 77777778888888888888887322 233334444466788888888888888888877533 4666677778888888
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHH--
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM-- 179 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-- 179 (329)
+.++|++.++.+.... |+...+..++..+...++..+|++.++++.+.... +...+..+..++.+.|-...|.++
T Consensus 151 q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 151 RGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 8888888888887653 55445544444444456666688888888887432 455555555555554433333322
Q ss_pred ----------------------------------------------HHHHHHc-CCCCch-h----hHHHHHHHHHhcCC
Q 020193 180 ----------------------------------------------YYSVCKL-GLCADV-S----TYKILIPAVSKAGM 207 (329)
Q Consensus 180 ----------------------------------------------~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~ 207 (329)
++.+... +..|.. . ...-.+-++...++
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 2222221 111221 1 12234456778899
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHhccCCHHHHH
Q 020193 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-----HPPNRPVYTMLITMCGRGGRFVEAA 282 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (329)
..++++.|+.+...+.+....+-..+..+|...+++++|..+++.+.... .+++......|.-++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999999988765456678889999999999999999999987643 2334444678999999999999999
Q ss_pred HHHHHHHhCCC-----------CCC---hhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 283 NYLVEMTEMGL-----------TPI---SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 283 ~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
.+++.+.+... .|+ ...+..++..+...|+..+|++.++.....
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999987322 233 335566778889999999999998887654
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.1e-15 Score=124.27 Aligned_cols=286 Identities=16% Similarity=0.069 Sum_probs=225.2
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC--CccChHHHHHHHHHHHhcCchhHHHHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
+..+|+..|..+...- ..+..+...+.++|...+++++|.++|+.+.+.. ..-+..+|.+.+--+.+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 5678999999965543 5566788889999999999999999999998763 122566777776554332 22333
Q ss_pred H-HHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 110 L-QEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 110 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
+ +.+.+.. +-.+.+|-++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+....++|.|...|+......+
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 3333333 567889999999999999999999999999987433 678888888888999999999999998876332
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 020193 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268 (329)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (329)
.+-..|-.+...|.+.++++.|+-.|+.+.+.++. +......+...+.+.|+.++|+++++++.....+ |+-.--.-
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 23445556778899999999999999999887654 6677777888899999999999999999876443 55555556
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
+..+...+++++|+..++++.+.- +-+...|..+...|.+.|..+.|..-+-.+..+++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 677788899999999999998753 33577889999999999999999988888777764
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=1.4e-13 Score=124.31 Aligned_cols=303 Identities=13% Similarity=0.029 Sum_probs=210.8
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhc--CCCccHHHHHHHHHHHHhcch---HHHHHHH---------------
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFALCEVKL---FHGAYAL--------------- 74 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~--------------- 74 (329)
-+......+.....+.|+.++|.++|+..... +-..+....+.++..|.+.+. ..++..+
T Consensus 374 ~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 453 (987)
T PRK09782 374 ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQ 453 (987)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhh
Confidence 35666666666677888888898888887652 112344455566777766654 2223222
Q ss_pred -------HHHHHHc-CC-cc--ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 020193 75 -------IRRMIRK-GF-VP--DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143 (329)
Q Consensus 75 -------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (329)
+...... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|..
T Consensus 454 ~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~ 530 (987)
T PRK09782 454 LPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALA 530 (987)
T ss_pred hhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHH
Confidence 2222211 11 23 55667777777766 77888888777776653 554433344555568899999999
Q ss_pred HHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 020193 144 MVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223 (329)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (329)
.++++... .|+...+..+..++.+.|+.++|...++...+..+ .+...+..+.......|++++|...+++..+..
T Consensus 531 ~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~- 606 (987)
T PRK09782 531 AWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA- 606 (987)
T ss_pred HHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-
Confidence 98887654 34445566677778888999999999988877653 233333344444455689999999998888753
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 020193 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLV 303 (329)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 303 (329)
|+...+..+...+.+.|++++|...+++..... +.+...++.+..++...|++++|+..+++..+.. +-+...+..+
T Consensus 607 -P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nL 683 (987)
T PRK09782 607 -PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQL 683 (987)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 467788888888899999999999998888763 3466677778888888899999999998888754 2357788888
Q ss_pred HHHHHhCCchhHHHHHHHHHhhhc
Q 020193 304 TDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 304 ~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..++...|++++|...++....++
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888999999999998888877665
No 31
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=1e-13 Score=107.86 Aligned_cols=287 Identities=13% Similarity=0.101 Sum_probs=230.7
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
..|+|.+|.+...+-.+.+ +.....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-...+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3689999999999887777 444556667777888899999999999998876445566667777888899999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH-------HhHHHHHHHHHccCCHHHHHHHHH
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL-------ETFNSLIETICKSGEVEFCVEMYY 181 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~ 181 (329)
-++++.+.+ +.++.......++|.+.|++.....++.++.+.|.-.+. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998876 566788889999999999999999999999998876554 457777777777777776666776
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC
Q 020193 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN 261 (329)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (329)
..... ...++..-..++.-+...|+.++|.++..+..+.+..|+ .. ..-.+.+.++.+.-++..+.-... .+.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCC
Confidence 66443 335566777888889999999999999999998877665 22 233456778888777777766654 3445
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 262 RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
+..+..|...|.+.+.|.+|...|+...+. .|+..+|..+..++.+.|+..+|.++++....
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 688999999999999999999999987764 58999999999999999999999999877653
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=1.3e-13 Score=124.48 Aligned_cols=264 Identities=10% Similarity=0.002 Sum_probs=208.5
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...|..+..++.. +++++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 77888888888877 7888899988887765 356554444555667899999999999998654 455556677788
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (329)
++.+.|+.++|...+++..+.... +...+..+.......|++++|...+++..+.. |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 899999999999999999887522 33334444445556699999999999998765 567889999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
|...+++..+..+. +...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999887543 66788888889999999999999999998863 44677889999999999999999999999986
Q ss_pred CCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 291 MGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 291 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
.. |+ ..+.........+..+++.|.+-+.....+
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 54 44 455566666677777788887766655443
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.1e-13 Score=114.83 Aligned_cols=263 Identities=13% Similarity=0.093 Sum_probs=205.6
Q ss_pred HHHHHHH-HHHHHccCchhHHHHHHHHhhhcCCCccHHHHH--HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 17 PQTLSLI-IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN--SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 17 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+..+..+ .....+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|.+.++++.+..+. +......+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll 193 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLA 193 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHH
Confidence 4444444 455589999999999999998754 5543332 3467888999999999999999987633 67788899
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPV-------RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
...|.+.|+|++|..++..+.+.+..++. .+|..++.......+.+...++++.+.+.- +.++.....+...
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~ 272 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEH 272 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHH
Confidence 99999999999999999999988643222 123333444444555667777777765542 3477888999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (329)
+...|+.++|.+++++..+.. |+... .++.+....++.+++.+..+...+..+. |+..+..+...+.+.+++++|
T Consensus 273 l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 273 LIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999988743 44422 2334444669999999999999877543 667788999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999985 68999999999999999999999999998654
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=2e-13 Score=113.89 Aligned_cols=274 Identities=13% Similarity=0.086 Sum_probs=199.6
Q ss_pred CCCHHH-HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHH
Q 020193 14 SVSPQT-LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92 (329)
Q Consensus 14 ~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (329)
.|++.. +-.......+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|...++.+.+..+. +...+..
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~l 192 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKL 192 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 455443 44556778889999999999999876541222234444688889999999999999999988633 6678889
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH-HHHHHH---HhcCChHHHHHHHHHHHHcCC---ccCHHhHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD-LLVQGL---LNAGYLESAKQMVNKMIKQGF---VLDLETFNSLIE 165 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~ 165 (329)
+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..+.+... +.+...+..+..
T Consensus 193 l~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 193 AEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 999999999999999999999988743 333332 111222 333333333445555554422 137788899999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCchhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCC
Q 020193 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTY-KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP--SLYAPIIKGMFRRGQ 242 (329)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~ 242 (329)
.+...|+.++|.+++++..+..+......+ ..........++.+.+.+.++...+.... |+ ....++...+.+.|+
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~ 350 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGE 350 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHccc
Confidence 999999999999999999886542221111 12222233457888899999888776322 44 566788999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
+++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 351 ~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 351 FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999655544578999999999999999999999999998653
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.5e-13 Score=102.94 Aligned_cols=272 Identities=14% Similarity=0.107 Sum_probs=201.1
Q ss_pred cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC---hHHHHHHHHHHHhcCchhHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD---KRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 106 (329)
..+.++|.+.|-+|.+.+ +.+..+.-+|.+.|-+.|..+.|+.+-+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567889999999998866 66677777888889999999999999988887521111 12334566778888899999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH----HhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL----ETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988765 334567788899999999999999999988887655432 3455666666778888999999988
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh
Q 020193 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (329)
..+.+. ..+..-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++...++..+.+.. ++.
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 877653 33444455667888899999999999999888776667788888899999999999999988888763 344
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 308 (329)
..-..+...-....-.+.|..++.+-..+ +|+...+..+++.-.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 44444444444444456666666655543 588888888887654
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=4.1e-13 Score=114.55 Aligned_cols=300 Identities=13% Similarity=0.047 Sum_probs=202.4
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
..-...+.+...|++++|.+++.++++.+ |.+...|..|...|-..|+.+++...+-...... +-|...|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33344445555699999999999999987 8889999999999999999999988775554443 336788999999999
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhH----HHHHHHHHccCCHH
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF----NSLIETICKSGEVE 174 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 174 (329)
+.|+++.|.-+|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ ...++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999886 566666667788899999999999999999887543233222 23455566677778
Q ss_pred HHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCC-
Q 020193 175 FCVEMYYSVCKL-GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG---------------------------HKP- 225 (329)
Q Consensus 175 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~- 225 (329)
.|.+.++..... +-..+...++.++..+.+...++.+........... ..+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 888887776652 222445566777777777777777766665554410 011
Q ss_pred -----------------------------------ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 020193 226 -----------------------------------FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270 (329)
Q Consensus 226 -----------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 270 (329)
+...|.-+..++.+.|++.+|+.+|..+......-+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 122244455556666666666666666665544344555666666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 271 MCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 271 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
+|...|.+++|.+.++..+... +-+...--.|...+.+.|+.++|.+.++-
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 6666666666666666655432 12233444455555666666666555443
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.8e-14 Score=118.92 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHH-HHHHHcCCccChHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALI-RRMIRKGFVPDKRTY 90 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~ 90 (329)
.-+..+...+..+|...+++++|.++|+.+.+.. ...+.++|.+.+.-+-+. -++..+ +.+.... +-.+.+|
T Consensus 350 ~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~Laq~Li~~~-~~sPesW 424 (638)
T KOG1126|consen 350 YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLAQDLIDTD-PNSPESW 424 (638)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHHHHHHhhC-CCCcHHH
Confidence 3455788899999999999999999999998653 123577888877655432 122222 3333332 3367899
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
..+.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+........ +-..|..+...|.+.
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kq 502 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQ 502 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheecc
Confidence 999999999999999999999998865 336788888888899999999999999998865322 445566678889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
++++.|+-.|++..+.++ .+.+....+...+.+.|+.++|+++++++...+.+ |+-.--.-+..+...+++++|+..+
T Consensus 503 ek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred chhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHH
Confidence 999999999999988765 56667777888899999999999999999877654 4444444666788899999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 020193 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295 (329)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 295 (329)
+++++. ++-+...|..+.+.|.+.|+.+.|+.-|.-+.+...++
T Consensus 581 EeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 581 EELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 999986 55567788899999999999999999998888655443
No 38
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=4.1e-13 Score=101.78 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=214.6
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC-CCcc--HHHHHHHHHHHHhcchHHHHHHHHHHH
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-CQQC--VLLYNSLLFALCEVKLFHGAYALIRRM 78 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (329)
.++|-+|.+.. +-+.++.-+|.+.|.+.|..+.|+++.+.+.++. .+-+ ......|.+-|...|-++.|+++|..+
T Consensus 55 vdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L 133 (389)
T COG2956 55 VDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQL 133 (389)
T ss_pred HHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 35666776633 4456677889999999999999999999987642 1111 234556778889999999999999999
Q ss_pred HHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 79 IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPV----RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
.+.+. .-......|+..|....+|++|+.+-+++.+.+-.+.. ..|.-+...+....+.+.|..++.+..+.+..
T Consensus 134 ~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 134 VDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK 212 (389)
T ss_pred hcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc
Confidence 87652 24557888999999999999999999999887633321 23344555556678899999999999887543
Q ss_pred cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 020193 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII 234 (329)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 234 (329)
.+..-..+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+..+.+.... ...-..+.
T Consensus 213 -cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~ 289 (389)
T COG2956 213 -CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--ADAELMLA 289 (389)
T ss_pred -ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--ccHHHHHH
Confidence 455556677888999999999999999999887667788999999999999999999999999886443 33334454
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh---ccCCHHHHHHHHHHHHh
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG---RGGRFVEAANYLVEMTE 290 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 290 (329)
.......-.+.|...+.+-... +|+...+..++..-. ..|+..+-...++.|..
T Consensus 290 ~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 290 DLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5444555566777666655554 699999999998765 34567777888888874
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.2e-13 Score=107.09 Aligned_cols=288 Identities=12% Similarity=0.101 Sum_probs=225.4
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cChHHHHHHHHHHHhcC
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PDKRTYAILVNAWCSSG 101 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 101 (329)
..++....+.+++.+=.+.....|.+.+...-+....+.....++++|+.+|+++.+..+- -|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3455556677888888888888887777777777777778889999999999999987421 15667777764433322
Q ss_pred chhHHHHHHHH-HHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHH
Q 020193 102 KMREAQEFLQE-MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180 (329)
Q Consensus 102 ~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 180 (329)
.. .++.+ ....+ +-.+.|+.++.+.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-|
T Consensus 314 kL----s~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KL----SYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH----HHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 21 12211 11111 234578888999999999999999999999998654 6778999999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 181 YSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
+...+-.+ .|-..|-.+.++|.-.+.+.=|+-+|++..+..+. |+..|..|..+|.+.++.++|++.|.+....|-.
T Consensus 388 RrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 99998765 68889999999999999999999999998886433 7899999999999999999999999999887543
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHh----CC-CCC-ChhhHHHHHHHHHhCCchhHHHHHH
Q 020193 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTE----MG-LTP-ISRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
+...+..|.+.|-+.++..+|...+..-++ .| +.| ....-..|...+.+.+++++|....
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 668899999999999999999998887664 23 223 2334444777788999999987643
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=7.7e-13 Score=114.56 Aligned_cols=233 Identities=12% Similarity=0.016 Sum_probs=136.2
Q ss_pred CccHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH---------hcCchhHHHHHHHHHH
Q 020193 49 QQCVLLYNSLLFALCE-----VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC---------SSGKMREAQEFLQEMS 114 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 114 (329)
+.+...|...+++... .+++++|.+.|++..+..+. +...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455555555544321 23456777777777665322 3344544444333 2234667777777777
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhh
Q 020193 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194 (329)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 194 (329)
+.+ +.+...+..+...+...|++++|...+++..+.++. +...+..+..++...|++++|...+++..+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 664 445566666667777777777777777777776432 4556666777777777777777777777765442 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 020193 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN-RPVYTMLITMCG 273 (329)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 273 (329)
+..++..+...|++++|...++++.+...+-++..+..+..++...|++++|...+.++... .|+ ....+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 23333345556777777777777665432223444556666677777777777777766543 223 233344444555
Q ss_pred ccCCHHHHHHHHHHHH
Q 020193 274 RGGRFVEAANYLVEMT 289 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~ 289 (329)
..| ++|...++.+.
T Consensus 487 ~~g--~~a~~~l~~ll 500 (553)
T PRK12370 487 QNS--ERALPTIREFL 500 (553)
T ss_pred ccH--HHHHHHHHHHH
Confidence 555 36666665555
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=3.5e-12 Score=109.00 Aligned_cols=281 Identities=15% Similarity=0.164 Sum_probs=165.6
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (329)
++.+..+.. |-.+..|..|...|-..|+.+++...+-.+-..+ |.|...|..+.....+.|.++.|.-.|.+.++..
T Consensus 161 i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~- 237 (895)
T KOG2076|consen 161 ILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQAN- 237 (895)
T ss_pred HHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 334444333 4455566666666666666666665555544443 5555666666666666666666666666655543
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC----------------------------------------CCCcc
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF----------------------------------------NPPVR 123 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------------~~~~~ 123 (329)
+++...+-.-...|-+.|+...|..-|.++..... ..+..
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e 317 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE 317 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 22333333344455555555555555555544321 12233
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc---------------------------CHHhHHHHHHHHHccCCHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL---------------------------DLETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~a 176 (329)
.++.++..+.+...++.|.............+ +..+ --++-++...+..+..
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELL 396 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchH
Confidence 34444444444444444444444333311011 1111 0111122222223333
Q ss_pred HHHHHHHHHcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 177 VEMYYSVCKLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
..+........ +.-+...|.-+..++...|++.+|..+|..+......-+...|-.+..+|...|.+++|.+.|+..+
T Consensus 397 e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl 476 (895)
T KOG2076|consen 397 EALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL 476 (895)
T ss_pred HHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333 2234567788889999999999999999999887555567899999999999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
.. -+.+...--.|...+.+.|+.++|.+.+..+.
T Consensus 477 ~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 477 IL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 76 23345555667777889999999999998876
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.5e-12 Score=98.95 Aligned_cols=305 Identities=12% Similarity=0.011 Sum_probs=214.5
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHH-----------------------------HHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLL-----------------------------FAL 62 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----------------------------~~~ 62 (329)
+...|+..+......+.+.|....|...|-.....- |-.=..|-.|. .++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 445666666667777778888888888887766543 32222222222 222
Q ss_pred HhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChHH
Q 020193 63 CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
......+++.+-.+.+...|++-+...-+....+.....|+++|+.+|+++.+... --|..+|+.++- .+..+-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s-- 313 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS-- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH--
Confidence 23334455555555555555544443334444445556677777777777766530 013344444332 222111
Q ss_pred HHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
.+..+.+-...--+--+.|+..+.+-|.-.++.++|...|++..+.++ .....|+.+..-|....+...|..-+++.++
T Consensus 314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111111110112345667777888888999999999999998765 4567899999999999999999999999998
Q ss_pred CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300 (329)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 300 (329)
-.+. |-..|-.|.++|.-.+.+.-|+-.|++.... .|.|+..|..|..+|.+.++.++|++.|+.....|- .+...+
T Consensus 393 i~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l 469 (559)
T KOG1155|consen 393 INPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSAL 469 (559)
T ss_pred cCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHH
Confidence 7544 7889999999999999999999999999887 456889999999999999999999999999998774 367899
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 301 DLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
..|.+.|.+.++.++|...++.-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999887665
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=4.1e-14 Score=120.27 Aligned_cols=254 Identities=17% Similarity=0.188 Sum_probs=174.1
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
+++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56788999999999999999999999999999998 9999998888899999999999999999887775
Q ss_pred CccChHHHHHHHHHHHhcCchhH---HHHHHHHHH----hCCCCCCcccH--------------HHHHHHHHhcCChHHH
Q 020193 83 FVPDKRTYAILVNAWCSSGKMRE---AQEFLQEMS----DKGFNPPVRGR--------------DLLVQGLLNAGYLESA 141 (329)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 141 (329)
.|...||..|..+|...||... +.+.+..+. ..|+......+ ...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999998655 333222221 12211111111 1122222333444444
Q ss_pred HHHHHHHHHcCCccCHHhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 142 KQMVNKMIKQGFVLDLETFNSLIETICKSG-EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
++++..+...... . .+..+++-+.... .+++-..+-....+ .|+..+|..++.+-..+|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 4444433322111 0 1111233333222 23333333222222 47888888888888888888888888888888
Q ss_pred CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 020193 221 DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277 (329)
Q Consensus 221 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
.|++.+...|..++.+ .++...++.+++-|...|+.|+..|+...+..+..+|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888777777755 77777888888888888888888888888877777554
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.7e-12 Score=100.47 Aligned_cols=202 Identities=11% Similarity=0.030 Sum_probs=133.8
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
.....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 335566667777777777777777777766543 2245566666777777777777777777776654 33455666667
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCc-cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (329)
..+...|++++|.+.+++..+.... .....+..+..++...|++++|...+.+...... .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 7777777777777777777654221 2334556666777777777777777777766543 3455666777777777888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8887777777665 233455566666777777777777777766654
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2.2e-12 Score=99.77 Aligned_cols=199 Identities=17% Similarity=0.154 Sum_probs=113.5
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 020193 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV 202 (329)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (329)
..+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 3444555555566666666666665554431 1344555555566666666666666666555432 2334555555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 020193 203 SKAGMIDEAFRLLHNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 281 (329)
...|++++|...+++...... ......+..+...+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666654321 1123344555666666677777777666666542 22345566666666667777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
...+++..+. .+.+...+..+...+...|+.++|..+.+....
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777666654 233455555666666666777777666555443
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.6e-12 Score=103.32 Aligned_cols=280 Identities=14% Similarity=0.121 Sum_probs=207.2
Q ss_pred HHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh--cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 25 EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE--VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
..+.+.|+++.|++++.-..+.+-+.....-|.|-..+.- -+++..|.+.-+..+... .-+......-.+.....|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 3467899999999999988776534333344433333222 346777777766655432 2233333333344556799
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+++|...+.+.......-....|| +.-.+...|+.++|++.|-++..- +..+..+...+.+.|-...+..+|++++.+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999999998764222222333 334567789999999999877653 123677888888999999999999999977
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh
Q 020193 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (329)
.... ++.|+...+.|...|-+.|+..+|.+.+-+--+- ++-+..+...|...|....-+++++..|++..- +.|+.
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 6543 4467888999999999999999999887654332 345778888899999999999999999998764 58999
Q ss_pred hhHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCc
Q 020193 263 PVYTMLITMCG-RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGK 312 (329)
Q Consensus 263 ~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 312 (329)
.-|..++..|. +.|++.+|..+++....+ ++.|..+...|++.+...|.
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999987765 689999999999998754 67789999999999888774
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=5.7e-12 Score=109.24 Aligned_cols=268 Identities=10% Similarity=0.021 Sum_probs=186.5
Q ss_pred CCHHHHHHHHHHHHc-----cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc---------chHHHHHHHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGK-----HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV---------KLFHGAYALIRRMIR 80 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~ 80 (329)
.+...|...++.... .+++++|...|++..+.+ |.+...|..+..++... +++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 455556566655322 235678999999998877 66677787777766532 347899999999888
Q ss_pred cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhH
Q 020193 81 KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
.+.. +...+..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7533 67788888888889999999999999998875 455677888888999999999999999999887544 23333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
..++..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++..... .+....+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhcc
Confidence 444555666889999999999887654323455577778888899999999999988765422 1334455566667777
Q ss_pred CChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 241 GQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
| ++|...++.+.+. ...+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4777777776653 112222223 33334445665555555 7776543
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.60 E-value=3.6e-11 Score=93.97 Aligned_cols=270 Identities=12% Similarity=0.069 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...|-.-..+.-+.|+.+.+-+.+.+..+..-.++....-+..+.....|+++.|..-+.++.+.+.. ++.......++
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~ 196 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRA 196 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHH
Confidence 34566667888899999999999999988633567778888889999999999999999999988654 66788999999
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPV-------RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...++..... ...++..-..++.-+.+
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHH
Confidence 99999999999999999998854443 46777777777777777766777776654 23467777888899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 020193 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (329)
.|+.++|.++..+..+.+..|. -...-.+.+-++...-.+..+.-.+... -++..+.+|...|.+.+.+.+|...
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999998876565 2222345567788777777777655432 2557889999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 020193 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295 (329)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 295 (329)
|+...+. .|+..+|+.+.+++.+.|+..+|.++.++....-.+|
T Consensus 351 leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 351 LEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 9977764 7999999999999999999999999998876433333
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1e-12 Score=99.89 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=118.0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 56 NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
+.+.++|.+.|.+.+|.+.++..+.. .|-+.||..|-+.|.+..+...|+.++.+-.+. .+-++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555555555555555555555543 334445555555555555555555555555443 122222233344555555
Q ss_pred CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 020193 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLL 215 (329)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (329)
++.++|.++++...+.... ++.....+...|.-.++++-|+..|+++.+.|. -++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 5555555555555544221 344444444455555555555555555555555 44455555555555555555555555
Q ss_pred HHHHhCCCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 216 HNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 216 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
++....-..|+ ..+|..+.......|++..|.+.|+-.+..+ ..+...++.|...-.+.|+.++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 55544322222 2344445555555555555555555555442 22444555555555555555555555555443
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=99.72 Aligned_cols=231 Identities=15% Similarity=0.060 Sum_probs=197.9
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-++|.+..++..|+.++.+-.+.- +-++.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56889999999999999999988876 4778899999999999999999999999988873 22555555677888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
++.++|.++|+...+... .++.....+...|.-.++++-|..+|+++.+.|.. ++..|+.+.-+|.-.++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999988754 56777778888889999999999999999999976 8899999999999999999999999
Q ss_pred HHHHHcCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 251 SEMKIKGHPPN--RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 251 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.+....--.|+ ...|-.+.......||+..|.+.|+-....+ .-+...++.|.-.-.+.|++++|+.++.-..++.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99887644344 3568888888889999999999999887655 3357889999988999999999999998877654
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.1e-10 Score=98.38 Aligned_cols=297 Identities=15% Similarity=0.124 Sum_probs=211.1
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
..-.....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. |..-|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHh
Confidence 3344456778899999999999886554 3555677788899999999999999999999998532 4445555555552
Q ss_pred hc-----CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 99 SS-----GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL-ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 99 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
.. .+.+...++++++...- |.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence 22 25677788888886653 4333333332222222233 3445566677777765 366677677776666
Q ss_pred HHHHHHHHHHHHHc----C----------CCCchh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 173 VEFCVEMYYSVCKL----G----------LCADVS--TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236 (329)
Q Consensus 173 ~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (329)
..-..+++...... + -.|... ++..+...|...|++++|..++++.++..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 66666666665432 1 123332 4456677888999999999999999887432 47788888999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH--------HHHHHHHH
Q 020193 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF--------DLVTDGLK 308 (329)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--------~~l~~~~~ 308 (329)
+-+.|++.+|.+.++..+..... |...-+..+..+.+.|+.++|.+++......+..|....+ .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654 7777777888889999999999999988766644433222 44567899
Q ss_pred hCCchhHHHHHHHHHh
Q 020193 309 NCGKHDLAEKIELLEV 324 (329)
Q Consensus 309 ~~g~~~~a~~~~~~~~ 324 (329)
+.|++..|.+.+....
T Consensus 317 r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVL 332 (517)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 9999999988765543
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.7e-11 Score=105.71 Aligned_cols=307 Identities=12% Similarity=0.025 Sum_probs=195.0
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhh----hcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc---CCccCh
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCT----AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK---GFVPDK 87 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 87 (329)
.|...|-.+...+-. ++...++.+|..+. ..+-++-+...|.+...+...|++..|...|...... ...+|.
T Consensus 412 ~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 344555555554433 33333355554432 3333455667777777777777777777777666544 112222
Q ss_pred ------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 88 ------RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 88 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
.+--.+..+.-..++.+.|.+.|..+.+.. |.-+..|.-+.-.....+...+|...++...+..-. ++..+.
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~ars 568 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARS 568 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHH
Confidence 223334555556667777777777776653 111222333332222345667777777776665422 556666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCChh
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKL-GLCADVSTYKILIPAVSK------------AGMIDEAFRLLHNLVEDGHKPFPS 228 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~ 228 (329)
.+...+.....+..|.+-|..+.+. ...+|..+...|...|.. .+..++|+++|.++.+..+. |..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence 6666777777777777766665543 222455555555555542 24467788888888776543 667
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHH
Q 020193 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE-MGLTPISRCFDLVTDGL 307 (329)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~ 307 (329)
.-|-+.-.++..|++..|..+|....+... .+..+|-.+.++|...|++..|+++|+...+ ....-+......|.+++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 777777888888999999999988887633 3556788888999999999999999887664 44445677888899999
Q ss_pred HhCCchhHHHHHHHHHhhh
Q 020193 308 KNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 308 ~~~g~~~~a~~~~~~~~~~ 326 (329)
.+.|.+.+|.+.......+
T Consensus 727 y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 9999999988887666544
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.8e-11 Score=97.26 Aligned_cols=288 Identities=8% Similarity=0.018 Sum_probs=212.4
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
|+.-++.......+.+...+++.+..++++...+.+ |+....+..-|.++...|+..+-..+=.+|.+.- +-.+.+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 344566667777777888888888888888888877 7788888777888888888777777777777653 33667888
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
++.--|.-.|+..+|.+.|.+....+ +.-...|-.+...|.-.|..+.|...+....+.-.. ....+--+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 88888888888899999988876544 223457888888888888888888888777664111 1122233344567788
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C-CChhhHHHHHHHHHccCChhH
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GH-K-PFPSLYAPIIKGMFRRGQFDD 245 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~~~~~~~ 245 (329)
+.+.|.+.|.+.....+ .|+...+-+.-.....+.+.+|..+|+..... +. . ....+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 88889888888776543 56667777777777778888888888876622 11 1 245568888888999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 020193 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL 307 (329)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 307 (329)
|+..++..+.. .+.+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+-..++..+
T Consensus 474 AI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 99999888876 45588888888888888999999999888876 4567766655555543
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.54 E-value=2.3e-11 Score=104.92 Aligned_cols=293 Identities=16% Similarity=0.186 Sum_probs=225.7
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc---CCC------ccHHHHHHHHHHHHhcchHHHHHHHH
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF---NCQ------QCVLLYNSLLFALCEVKLFHGAYALI 75 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 75 (329)
++.|...+-++.++..|.+.......|+++.|...|...... ... +++.+-..+..++-..++++.|.+.|
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455667777789999999999999999999999999988754 112 22333445667777788999999999
Q ss_pred HHHHHcCCccC-hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-C
Q 020193 76 RRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-F 153 (329)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 153 (329)
....+.. |+ +..|..+.......+...+|...+....... ..++..+..+...+.+...+..|.+-|....+.- .
T Consensus 520 k~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 520 KSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred HHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 9999863 33 2344555544445578899999999988765 5677788888889999999999999887766542 2
Q ss_pred ccCHHhHHHHHHHHHc------------cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 154 VLDLETFNSLIETICK------------SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 154 ~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
.+|+.+...|.+.|.+ .+..++|+++|.+..+..+ .|...-+-+.-+++..|++..|..+|.++.+.
T Consensus 597 ~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 597 KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREA 675 (1018)
T ss_pred CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHH
Confidence 3566666666665543 3457889999999888765 67777788888899999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 222 GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCF 300 (329)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 300 (329)
... ...+|-.+.++|...|++-.|+++|+...+. .-..++.+...|.+++.+.|.+.+|.+.+.......+.-....|
T Consensus 676 ~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 676 TSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred Hhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 542 5678888999999999999999999987765 44557788999999999999999999998887765433333444
Q ss_pred HH
Q 020193 301 DL 302 (329)
Q Consensus 301 ~~ 302 (329)
+.
T Consensus 755 N~ 756 (1018)
T KOG2002|consen 755 NL 756 (1018)
T ss_pred HH
Confidence 44
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=8e-11 Score=94.43 Aligned_cols=197 Identities=14% Similarity=0.072 Sum_probs=137.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (329)
|--+..+|...++.++..+.|+...+.+.. ++.+|..-.+.+.-.+++++|..-|++.....+ .+...|..+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHH
Confidence 555556666666677777777776666544 566666666666667777777777777766543 345566666666678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----CCChhhH--HHHHHHHhccCC
Q 020193 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVY--TMLITMCGRGGR 277 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~--~~l~~~~~~~~~ 277 (329)
.++++++...|++..+. ++..+..|+.....+...++++.|.+.|+....... ..+...+ -.++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 88899999999988776 444678888888999999999999999988876521 1122221 1122111 2478
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 278 FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 278 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
+..|..++++.++...+ ....|..|...-.+.|+.++|+++++....+
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999888865422 3567888888899999999999999887654
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=3e-10 Score=94.44 Aligned_cols=302 Identities=11% Similarity=0.051 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...|......=-..|..+....+|++....- |.....|-.....+-..|+...|..++....+.... +...|..-+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKl 627 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKL 627 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3444444444445555555555555555432 344444444455555555555555555555544322 44455555555
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC-HHhHHHHHHHHHccCCHHH
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGEVEF 175 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 175 (329)
-.....++.|..+|.+....+ |+...|.--++..--.++.++|.+++++..+. .|+ ...|..+.+.+-+.++.+.
T Consensus 628 e~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence 555555555555555554432 44445544444444555555555555555544 222 2344444555555555555
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
|.+.|..-.+. ++.....|..+...--+.|.+-.|..++++..-.++. +...|...|..-.+.|+.+.|..+..+.++
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555443322 1122334444444444555555555555555444332 444555555555555555555544444332
Q ss_pred c----C-------------------------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 256 K----G-------------------------HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 256 ~----~-------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
. | ...|+...-.+...|.....+++|.+.|.+.++.+ +-+..+|..+...
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykf 860 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKF 860 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHH
Confidence 2 0 23466667777778888889999999999988765 2246788889999
Q ss_pred HHhCCchhHHHHHHHHHhhhc
Q 020193 307 LKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 307 ~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+.++|.-++-.+++.....-+
T Consensus 861 el~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHhCCHHHHHHHHHHHhccC
Confidence 999998888888887765543
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=8.4e-11 Score=93.72 Aligned_cols=298 Identities=14% Similarity=0.114 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc------------
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP------------ 85 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------ 85 (329)
...+.+.-.+.+.|+++.|+.-|+...+.. |+..+--.|+-++..-|+-++..+.|.+|..-...|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 445555666788899999999999988765 666555555556667788888888888887642222
Q ss_pred ChHHHHHHH---------------------------------------------------------------HHHHhcCc
Q 020193 86 DKRTYAILV---------------------------------------------------------------NAWCSSGK 102 (329)
Q Consensus 86 ~~~~~~~l~---------------------------------------------------------------~~~~~~~~ 102 (329)
+....+.-+ ..+.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 111111111 11334556
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHH--HH----------------------------------HHHhcCChHHHHHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLL--VQ----------------------------------GLLNAGYLESAKQMVN 146 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~----------------------------------~~~~~~~~~~a~~~~~ 146 (329)
++.|.+++.-+.+..-+.-...-+.| +. .....|++++|.+.++
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 66666655555433211100000000 00 0012245555555555
Q ss_pred HHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 020193 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226 (329)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 226 (329)
+.......-....|+ +.-.+-..|++++|++.|-++... ...+......+...|....+..+|.+++-+.... ++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 555432111111111 122344456666666666555432 1234555556666677777777777777665443 3446
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-
Q 020193 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD- 305 (329)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~- 305 (329)
+...+-|...|-+.|+-..|.+..-+--.. ++-|..+...|...|....-+++++.+|++.. -+.|+..-|..++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHH
Confidence 777788888888888888888776544333 56677888888888888888899999998765 36799999988765
Q ss_pred HHHhCCchhHHHHHHHHH
Q 020193 306 GLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 306 ~~~~~g~~~~a~~~~~~~ 323 (329)
++.+.|++++|.++++..
T Consensus 669 c~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHhcccHHHHHHHHHHH
Confidence 567899999999988653
No 58
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.48 E-value=7e-10 Score=93.61 Aligned_cols=269 Identities=16% Similarity=0.064 Sum_probs=194.2
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHcCCccCh
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV-----KLFHGAYALIRRMIRKGFVPDK 87 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 87 (329)
+.............+.+.|+.++|..+|..+.+++ |.|..-|..+..+..-. .+.+...++|+++...- |..
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s 110 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRS 110 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccc
Confidence 33445667888999999999999999999999998 77777777777776333 35778888999887653 443
Q ss_pred HHHHHHHHHHHhcCch-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc----C----------
Q 020193 88 RTYAILVNAWCSSGKM-REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----G---------- 152 (329)
Q Consensus 88 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---------- 152 (329)
.....+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-..+++...... +
T Consensus 111 ~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~ 187 (517)
T PF12569_consen 111 DAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEK 187 (517)
T ss_pred cchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCcccccc
Confidence 3333333233332233 3455677777888864 46777777777666666666666655432 1
Q ss_pred CccCH--HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 153 FVLDL--ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230 (329)
Q Consensus 153 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (329)
-+|+. .++..+.+.|...|++++|++.+++.+...+ ..+..|..-.+.+-+.|++.+|...++.....+.. |...-
T Consensus 188 ~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiN 265 (517)
T PF12569_consen 188 EPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYIN 265 (517)
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHH
Confidence 12333 3556678888999999999999999988753 34678888899999999999999999999887654 67777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhH--------HHHHHHHhccCCHHHHHHHHHHHH
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVY--------TMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
+-.+..+.++|+.++|.+++......+..|-...+ .....+|.+.|++..|++.|....
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77888899999999999999988876654333222 335567889999998888765544
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.7e-13 Score=77.44 Aligned_cols=49 Identities=37% Similarity=0.712 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 60
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.48 E-value=3.6e-09 Score=88.21 Aligned_cols=311 Identities=11% Similarity=0.056 Sum_probs=224.5
Q ss_pred hhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc--cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC
Q 020193 6 ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ--CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83 (329)
Q Consensus 6 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (329)
.++...|+..+...|-.=...|-+.|..-.+..+....+..|+.. --.+|+.-...|.+.+.++-|..+|...++.-
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf- 546 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF- 546 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-
Confidence 345556666677776666666767777777777776666555332 24567777777777777887888887777652
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (329)
+-+...|......=-..|..+....++++....- +-....|-.....+-..|+...|..++.+..+.... +...|-..
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3355667777666667778888888888887763 445566666777777888888998888888887544 67788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 020193 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (329)
+.......+++.|..+|.+.... .|+...|.--+..-.-.+..++|.+++++..+. ++--...|..+.+.+-+.++.
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHH
Confidence 88888888899998888887664 366666666666666678888898888887775 222345677777888888888
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
+.|...|..-.+. ++..+..|-.+.+.=-+.|.+-+|..++++..-++. -+...|-..++.=.+.|..+.|..+...+
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888887766554 343445566666666677888999999988877663 36788888899989999999888775544
Q ss_pred h
Q 020193 324 V 324 (329)
Q Consensus 324 ~ 324 (329)
.
T Consensus 780 L 780 (913)
T KOG0495|consen 780 L 780 (913)
T ss_pred H
Confidence 3
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.2e-10 Score=91.41 Aligned_cols=274 Identities=11% Similarity=0.037 Sum_probs=217.2
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
..++.......+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-.-+-.++.+. .|..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3455666666777888899999999999998874 456666777777889999988877777777776 36678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (329)
.-.|...|+..+|.+.|.+....+.. =...|-.+...++-.|.-++|...+....+.=. -...-+--+.--|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccH
Confidence 99999999999999999988765322 245788999999999999999999988765411 1112223344467789999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc------CCCCChhhHHHHHHHHhccCCHHHHH
Q 020193 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK------GHPPNRPVYTMLITMCGRGGRFVEAA 282 (329)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (329)
+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. ...-...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999987653 336777787777778889999999999888732 11124567899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 283 NYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 283 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
..++...... +-+..++.++.-.|...|+++.|.+.+.....+++
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 9999998765 45789999999999999999999999988877664
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=1.2e-10 Score=97.03 Aligned_cols=240 Identities=16% Similarity=0.170 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhC-----C-CCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCc
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDK-----G-FNPPV-RGRDLLVQGLLNAGYLESAKQMVNKMIKQ-----GFV 154 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 154 (329)
..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++..- |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888999999999999998887654 2 01222 23344677888899999999999987653 221
Q ss_pred -c-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 020193 155 -L-DLETFNSLIETICKSGEVEFCVEMYYSVCKL-----GL-CAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVED---G 222 (329)
Q Consensus 155 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 222 (329)
| -..+++.|..+|.+.|++++|...+++..+. +. .|. ...++.+...|+..+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2346777888899999999888887776432 11 122 234667778888899999999999876532 1
Q ss_pred CCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHH--
Q 020193 223 HKP----FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----G--HPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-- 289 (329)
Q Consensus 223 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 289 (329)
+.+ -..+++.|...|...|++++|.++++.+... | ..-....++.+...|.+.+++.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 122 2457889999999999999999999888754 1 12224567888889999999999988887754
Q ss_pred --hCCC-CCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 290 --EMGL-TPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 290 --~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
..|. .|+ ..+|..|...|.+.|++++|.++.+.....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2332 133 568899999999999999999998776644
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=2.6e-13 Score=76.62 Aligned_cols=49 Identities=31% Similarity=0.563 Sum_probs=27.1
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 260 PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 308 (329)
||..+||.++.+|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.5e-10 Score=96.47 Aligned_cols=241 Identities=17% Similarity=0.145 Sum_probs=152.2
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-----C-CccChHH-HHHHHHHHHhcCchhHHHHHHHHHHhC-----
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-----G-FVPDKRT-YAILVNAWCSSGKMREAQEFLQEMSDK----- 116 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 116 (329)
|.-..+...+...|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333445555777777777777777777666543 1 1223322 334666777777777777777776432
Q ss_pred C--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCc-cCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 020193 117 G--FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-----GFV-LDL-ETFNSLIETICKSGEVEFCVEMYYSVCKL- 186 (329)
Q Consensus 117 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 186 (329)
| .+.-..+++.|..+|.+.|++++|...+++..+- +.. |.. ..++.+...+...+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1 1112345566666777788877777777654431 111 122 23555666777788888888877765432
Q ss_pred --CCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--C-CChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 187 --GLCAD----VSTYKILIPAVSKAGMIDEAFRLLHNLVED----GH--K-PFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 187 --~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
-+.++ ..+++.|...|...|++++|..+++.++.. +- . -....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11122 357888888888888888888888876643 11 1 12345677888888888888888887765
Q ss_pred HHc----CC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 254 KIK----GH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 254 ~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
..- |. +-...+|..|...|.+.|+++.|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 22 2234678888888888888888888877665
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=5e-10 Score=81.43 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34445555666666666666666666554 334455566666666666666666666666655333 4455556666666
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHH
Q 020193 169 KSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (329)
..|++++|...|++....-.- -...+|..+.-+..+.|+.+.|...|++..+.... .+.+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 666666666666665543111 12345555555556666666666666665554322 2334445555556666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 248 CFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
.+++.....+. ++..+....|+.--+.|+.+.+-++=..+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666555533 555555555555555666555555444443
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=1.2e-08 Score=84.41 Aligned_cols=305 Identities=10% Similarity=-0.085 Sum_probs=189.0
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH---HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (329)
.+..|..+...+...|+.+.+.+.+....+.. +++. .........+...|++++|.+.+++..+..+ .|...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH
Confidence 34567777777778888888877777765543 2222 2233334456678999999999999887642 24444442
Q ss_pred HHHHHHh----cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 93 LVNAWCS----SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 93 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
...+.. .+..+.+.+.++.. ....+........+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 222222 34455555555441 1111222333445667888999999999999999988533 5677888899999
Q ss_pred ccCCHHHHHHHHHHHHHcCCC-Cch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHccC
Q 020193 169 KSGEVEFCVEMYYSVCKLGLC-ADV--STYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPFPSLY-A--PIIKGMFRRG 241 (329)
Q Consensus 169 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~ 241 (329)
..|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998775432 222 3455788889999999999999999864432 1112111 1 2333344445
Q ss_pred ChhHHHHH--H-HHHHHcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------C--ChhhHHHHHHHHHh
Q 020193 242 QFDDAFCF--F-SEMKIKGH-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT------P--ISRCFDLVTDGLKN 309 (329)
Q Consensus 242 ~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~ 309 (329)
....+.++ + ........ ............++...|+.+.|...++.+...... . .....-....++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 44433333 2 22111100 111122235666778899999999999988753221 1 12222233345668
Q ss_pred CCchhHHHHHHHHHhh
Q 020193 310 CGKHDLAEKIELLEVS 325 (329)
Q Consensus 310 ~g~~~~a~~~~~~~~~ 325 (329)
.|++++|.+.+.....
T Consensus 320 ~g~~~~A~~~L~~al~ 335 (355)
T cd05804 320 EGNYATALELLGPVRD 335 (355)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999988766544
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.41 E-value=1.8e-09 Score=78.64 Aligned_cols=197 Identities=14% Similarity=-0.009 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (329)
...|.-.|...|++..|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344455556666666666666666555322 44455555566666666666666666655543 3344555555556666
Q ss_pred cCChHHHHHHHHHHHHcCC-ccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 020193 135 AGYLESAKQMVNKMIKQGF-VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (329)
.|++++|...|++...... .....+|..+.-+..+.|+.+.|...|++..+... -...+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 6666666666665554421 11234555555555566666666666666555433 223344455555556666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
+++.....+. ++..+....|..-...|+-+.+.+.=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666555443 4555555555555556665555554444443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.2e-09 Score=87.17 Aligned_cols=218 Identities=11% Similarity=-0.014 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHHHcC-CccC--hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH
Q 020193 66 KLFHGAYALIRRMIRKG-FVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (329)
+..+.++.-+.+++... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666666432 1111 3446666667777777777777777777664 445667777777777788888888
Q ss_pred HHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 020193 143 QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (329)
..|++..+.... +..++..+..++...|++++|.+.++...+..+ +..........+...++.++|...+.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777766433 455666777777777788888887777776543 22211222223344567777777776644332
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc---CC---CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 223 HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK---GH---PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
.|+...+ .+ .....|+...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 22 22334554443 244443321 00 1123567777788888888888888888877655
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.6e-09 Score=86.51 Aligned_cols=220 Identities=12% Similarity=-0.027 Sum_probs=155.6
Q ss_pred ccCchhHHHHHHHHhhhcC-CC--ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhH
Q 020193 29 KHGLVDNAVEVFNKCTAFN-CQ--QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (329)
..+..+.++.-+.++.... .. .....|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 3456677788888877532 11 2245688888889999999999999999988753 367889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
|...|+...+.. +-+..++..+..++...|++++|.+.+++..+.. |+..........+...++.++|...+.+...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999998865 3456778888888999999999999999998874 3322222222334557789999999977554
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--C-CChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020193 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED---GH--K-PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257 (329)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (329)
.. .|+...+ .+.. ...|+...+ ..+..+.+. .+ . .....|..+...+...|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2332222 2222 334555443 344444422 11 1 123578889999999999999999999999764
No 70
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.5e-10 Score=90.24 Aligned_cols=220 Identities=16% Similarity=0.106 Sum_probs=116.5
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
-.|+.-.|.+-|+..++.. +.+...|--+...|....+.++..+.|+...+.+.. |+.+|..-.....-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 3455566666666665554 222233555555566666666666666666555432 44555555555555566666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
=|++.++.. +.+...|..+.-+..+.++++++...|++.++. ++..+..|+.....+...+++++|.+.|+.......
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 666665543 233444444444455556666666666666555 222455666666666666666666666666554321
Q ss_pred C-----Cch--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 189 C-----ADV--STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 189 ~-----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
. .+. .+.-.++.. .-.+++..|..++++..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 011 111111111 1235566666666666554433 34455556666666666666666666554
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.3e-09 Score=83.09 Aligned_cols=307 Identities=12% Similarity=-0.003 Sum_probs=194.8
Q ss_pred CCCCHHHHHHHHHHHHcc--CchhHHHHHHHHhh-hcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH
Q 020193 13 LSVSPQTLSLIIEEFGKH--GLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (329)
++|.-.....-+.+++.. ++...|...+-.+. ..-++-|+.....+.+++...|+.++|...|++....++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 344444444444444433 33334444443332 2234677888888888999999999998888887754311 2333
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
.....-.+.+.|+.+....+...+.... ..+...|-.-.......+++..|+.+-++.++.... +...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHh
Confidence 4444455667788887777777765542 233344444455566677888888888887776433 44455555566777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HH-HHccCChhHHH
Q 020193 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII-KG-MFRRGQFDDAF 247 (329)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~ 247 (329)
.++.++|.-.|+......+ .+...|..|+.+|...|++.+|..+-+..... ...+..+...+. .. +.....-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 8888888888887766433 46778888888888888888887766665443 122344443331 11 12223346777
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 248 CFFSEMKIKGHPPNR-PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 248 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
++++..... .|+. ...+.+...|...|+.+.+..++++... ..||....+.|.+.+...+.+++|.+.+....++
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 777776653 3432 3445566677778888888888877664 3577888888888888888888888887777666
Q ss_pred cc
Q 020193 327 RS 328 (329)
Q Consensus 327 ~~ 328 (329)
++
T Consensus 501 dP 502 (564)
T KOG1174|consen 501 DP 502 (564)
T ss_pred Cc
Confidence 53
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.9e-09 Score=83.32 Aligned_cols=272 Identities=12% Similarity=0.046 Sum_probs=208.5
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
-++-+.+....+.+.+...|+.++|+..|+.....+ |-+........-.+.+.|+++....+...+.... ..+...|.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 356788899999999999999999999999998776 4445544445556677889998888888877653 22444455
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
.-........+++.|+.+-++.++.+ +.+...+-.-.+.+...|++++|.-.|+......+ -+...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 55556667789999999999998875 45566666667888899999999999998887643 37889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHH
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILI-PAVS-KAGMIDEAFRLLHNLVEDGHKPF-PSLYAPIIKGMFRRGQFDDAFC 248 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 248 (329)
.+.+|.-.-+...+. ..-+..+.+.+. ..|. ....-++|.++++.-... .|+ ....+.+...+...|..+.++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999998877665443 224455555442 2232 233457888888886664 333 3456777888899999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 249 FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
++++.... .||....+.|.+.+...+.+++|++.|......+
T Consensus 460 LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99998864 6899999999999999999999999998887654
No 73
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=2.1e-08 Score=80.73 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=48.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHH
Q 020193 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
+.++..|.+++.... |.-|-..+|...|..=.+.++++...+++++.++.+ +-+..+|......=...|+.+.|..+
T Consensus 417 q~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 417 QLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444444333 334555666666666666666666666666666654 23556666666666666777777666
Q ss_pred HHHHhh
Q 020193 320 ELLEVS 325 (329)
Q Consensus 320 ~~~~~~ 325 (329)
++++.+
T Consensus 494 felAi~ 499 (677)
T KOG1915|consen 494 FELAIS 499 (677)
T ss_pred HHHHhc
Confidence 666554
No 74
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=9.6e-10 Score=83.12 Aligned_cols=299 Identities=11% Similarity=0.120 Sum_probs=164.5
Q ss_pred hCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH
Q 020193 10 PYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89 (329)
Q Consensus 10 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (329)
..|+.....-+++.+..+.+..++++|++++..-.++. +.+......|..+|....++..|-+.|+++-.. .|...-
T Consensus 3 ~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~q 79 (459)
T KOG4340|consen 3 GSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQ 79 (459)
T ss_pred cccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHH
Confidence 34555555567888888899999999999999988876 668888999999999999999999999998765 444444
Q ss_pred HHH-HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH--HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 90 YAI-LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV--QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 90 ~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
|.. -...+.+.+.+..|+.+...|.+. ++...-..-+ ......+++..+..++++....| +..+.+.....
T Consensus 80 YrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCl 153 (459)
T KOG4340|consen 80 YRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCL 153 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchhe
Confidence 433 245566777788888887776542 1111111111 11223455555555555554322 23333333333
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS------------------ 228 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------ 228 (329)
..+.|+++.|.+-|....+-+.--....|+..+..| +.++++.|+++..++++.|++-.+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 445666666666666655443323344555444333 3456666666666665554321111
Q ss_pred ----------hHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh
Q 020193 229 ----------LYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297 (329)
Q Consensus 229 ----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 297 (329)
.+|.-...+.+.|+++.|.+.+..|..+ ....|+.|...+.-.= ..+++.+..+-+.-+.+.+. ...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CCh
Confidence 0111122234555666666555555432 1223444444332221 12333333333333333322 234
Q ss_pred hhHHHHHHHHHhCCchhHHHHHH
Q 020193 298 RCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
.||..++-.|+++.-++.|-+++
T Consensus 311 ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHH
Confidence 45555555566665555555443
No 75
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.1e-07 Score=76.67 Aligned_cols=306 Identities=12% Similarity=0.016 Sum_probs=194.8
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-CC-ccChHHH
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GF-VPDKRTY 90 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~ 90 (329)
..|+..+|.+.|+.=.+.+.++.|..+++...-. .|++.+|--..+.-.++|....+..+|....+. |- ..+...+
T Consensus 170 w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 170 WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4578888888888877888888888888877654 377777777777777777777777777666543 10 0011122
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHh--------------------------------------------CCCCCCcccHH
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSD--------------------------------------------KGFNPPVRGRD 126 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------------------------~~~~~~~~~~~ 126 (329)
.++...=.++..++.|.-+|.-.++ .+ +.|-.+|-
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWf 326 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWF 326 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHH
Confidence 2222221222233333333332221 11 23444555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCH--HhHHHH----HH----HHHccCCHHHHHHHHHHHHHcCCCCchhhHH
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDL--ETFNSL----IE----TICKSGEVEFCVEMYYSVCKLGLCADVSTYK 196 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l----~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (329)
..++.-...|+.+...+++++.+..- +|-. ..|.-. ++ .-....+.+.+.++|+...+. ++....||.
T Consensus 327 dylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFa 404 (677)
T KOG1915|consen 327 DYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFA 404 (677)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHH
Confidence 55666666677777777777776652 2211 111111 11 112356677777777776663 222334444
Q ss_pred HHH----HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 020193 197 ILI----PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272 (329)
Q Consensus 197 ~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (329)
-+- ..-.++.+...|.+++...+ |.-|-..+|...|..-.+.++++.+..++++.++.+ |-|..+|......=
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 333 23346677888888887754 456788888888888899999999999999999874 33677888887777
Q ss_pred hccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 273 GRGGRFVEAANYLVEMTEMG-LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
...|+.+.|..+|.-.++.. +......|...++.=...|.++.|..+++...+.
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 78999999999999888643 2233556777777778899999999998876653
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=6.8e-08 Score=82.21 Aligned_cols=318 Identities=13% Similarity=0.042 Sum_probs=195.6
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (329)
+..+....+.-++..|..+.-++...|+++.+.+.|++....- -...+.|+.+...+...|.-..|..+++.-......
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3444555566789999999999999999999999999876432 334566777777777777766777776665443322
Q ss_pred cC-hHHHHHHHHHHH-hcCchh--------------------------------------------------HHHHHHHH
Q 020193 85 PD-KRTYAILVNAWC-SSGKMR--------------------------------------------------EAQEFLQE 112 (329)
Q Consensus 85 ~~-~~~~~~l~~~~~-~~~~~~--------------------------------------------------~a~~~~~~ 112 (329)
|+ ...+-..-..|. +.+..+ ++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 32 222222222222 122223 33333444
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---
Q 020193 113 MSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC--- 189 (329)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 189 (329)
..+.+ +.|+.....+.--|+..++.+.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+.....-..
T Consensus 470 av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 470 AVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 43332 12222222333345556677777777777777655556777777777777777777777666554321000
Q ss_pred --------------------------------------------------------------------------------
Q 020193 190 -------------------------------------------------------------------------------- 189 (329)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (329)
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence
Q ss_pred -------------Cc------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 190 -------------AD------VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 190 -------------~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
|+ ...|......+.+.+..++|...+.+..... ......|......+...|++++|...|
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 00 0111222233333344444444443333221 123334444445566778888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH--HHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN--YLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
......+ |.++...+.+..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.+-+.-..+++
T Consensus 708 ~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 708 LVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 8877652 3355678889999999998888887 999999876 4478999999999999999999999998888776
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=5.1e-08 Score=80.59 Aligned_cols=263 Identities=12% Similarity=0.017 Sum_probs=167.1
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHHHHcCCccC-hHHHHHHHHHH
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE----VKLFHGAYALIRRMIRKGFVPD-KRTYAILVNAW 97 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 97 (329)
....+...|++++|.+.++...+.. |.+...+.. ...+.. .+..+.+.+.+.. .....|+ ......+...+
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHH
Confidence 3445677899999999999998775 666655553 223322 3445555555544 1122333 33445666788
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCH--HhHHHHHHHHHccCCHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDL--ETFNSLIETICKSGEVE 174 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 174 (329)
...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....... |+. ..|..+...+...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 89999999999999999875 555677888999999999999999999998876322 222 34557888899999999
Q ss_pred HHHHHHHHHHHcCC-CCchhhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHccCChhHH
Q 020193 175 FCVEMYYSVCKLGL-CADVSTY-K--ILIPAVSKAGMIDEAFRL--L-HNLVEDGH-KPFPSLYAPIIKGMFRRGQFDDA 246 (329)
Q Consensus 175 ~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 246 (329)
+|..++++...... .+..... + .++.-+...|....+..+ + ........ ............++...|+.+.|
T Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a 283 (355)
T cd05804 204 AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDAL 283 (355)
T ss_pred HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHH
Confidence 99999999864332 1112111 1 233333444443333332 2 11111101 11112223566778889999999
Q ss_pred HHHHHHHHHcCCCC---C---hhhHHHHH--HHHhccCCHHHHHHHHHHHHh
Q 020193 247 FCFFSEMKIKGHPP---N---RPVYTMLI--TMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 247 ~~~~~~~~~~~~~~---~---~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~ 290 (329)
..+++.+......+ . ..+-..++ .++...|++++|.+.+.....
T Consensus 284 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 284 DKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999887642220 0 11122233 345588999999999988764
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=9.3e-10 Score=86.59 Aligned_cols=252 Identities=15% Similarity=0.148 Sum_probs=159.9
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
++-+.-.|++..++.-.+ .....-+.+......+.+++...|+++.++ .++... ..|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 344556788888886665 333332334556667788888888877554 333333 366766666666555544455
Q ss_pred hHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+.+..-++........+ +..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554443333222 2222223334566678899888888653 2566777788888999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020193 183 VCKLGLCADVSTYKILIPAVSK----AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 258 (329)
|.+.+ +..+...+..++.. .+.+++|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+....+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 87642 23344445544433 34688999999997654 45678888888888999999999999988887654
Q ss_pred CCChhhHHHHHHHHhccCCH-HHHHHHHHHHHhC
Q 020193 259 PPNRPVYTMLITMCGRGGRF-VEAANYLVEMTEM 291 (329)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 291 (329)
+-++.+...++.+....|+. +.+.+++.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 33667777788777777877 5677788777754
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=8.1e-10 Score=94.85 Aligned_cols=262 Identities=16% Similarity=0.096 Sum_probs=186.8
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 020193 38 EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (329)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999998 9999998888888899999999999998877765
Q ss_pred CCCCcccHHHHHHHHHhcCChHH---HHHHHHHHHH----cCCccCHHhHHHH--------------HHHHHccCCHHHH
Q 020193 118 FNPPVRGRDLLVQGLLNAGYLES---AKQMVNKMIK----QGFVLDLETFNSL--------------IETICKSGEVEFC 176 (329)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~~~l--------------~~~~~~~~~~~~a 176 (329)
.|...+|..|..+|...||... +.+.+..+.. .|+.....-+-.. +......|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999654 3332222222 2322111111111 1122223444444
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
.+++..+..... + .++..+++-+..... -.+++........-.|++.+|..++++-..+|+.+.|..++.+|++.
T Consensus 159 lkll~~~Pvsa~--~-~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 159 LKLLAKVPVSAW--N-APFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHhhCCcccc--c-chHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 444443322111 0 011112444433332 23333333332222589999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHH
Q 020193 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
|++.+..-|..|+-+ .++..-+..+++-|.+.|+.|+..|+...+-.+.++|....+.+.
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 999999988888876 788888999999999999999999999998888887776555544
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=2.2e-09 Score=84.50 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=63.6
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc----cC
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----SG 171 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 171 (329)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 334445555555444321 223344444555555555555555555554431 12 222222222221 22
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-hHHHHHH
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF-DDAFCFF 250 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~ 250 (329)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+.. ++.+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355555555554332 2244445555555555555555555555554443322 344444444444444444 3344444
Q ss_pred HHHHH
Q 020193 251 SEMKI 255 (329)
Q Consensus 251 ~~~~~ 255 (329)
..+..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=4.1e-07 Score=70.57 Aligned_cols=305 Identities=10% Similarity=0.058 Sum_probs=222.5
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHH-
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY- 90 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 90 (329)
+-+.++.-..-+.+.+...|++..|+.-|...++.+ |.+-.++..-...|...|+-..|+.=+.+.++. +||-..-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 334455666777888889999999999999998876 555555555667888889888888888888765 6665322
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc----c------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR----G------------RDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
..-...+.+.|.++.|..=|+.+.+.. |+.. . ....+..+...|+...|+.....+.+..+
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~- 186 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP- 186 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-
Confidence 122345778999999999999998765 3211 1 12234556678999999999999998743
Q ss_pred cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----H
Q 020193 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL----Y 230 (329)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 230 (329)
-|...+..-..+|...|++..|+.-++...+... .+..++--+-..+...|+.+.++...++..+. .|+... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH
Confidence 3888888889999999999999888877766543 45566666777788889999999998888775 344332 2
Q ss_pred HHH---------HHHHHccCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-h
Q 020193 231 API---------IKGMFRRGQFDDAFCFFSEMKIKGHPPN---RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-S 297 (329)
Q Consensus 231 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~ 297 (329)
-.+ +......++|.++....+...+...... ...+..+-.++...+++.+|++...+..+. .|+ .
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv 341 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHH
Confidence 111 1223456777777777777766532212 234455667777889999999999998864 454 8
Q ss_pred hhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 298 RCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.++..-..+|.-...++.|+.=++.+.+++
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888899999999999999888887765
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=7.9e-07 Score=74.53 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCChhhHH--HHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 259 PPNRPVYT--MLITMCGRGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 259 ~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+|+...|+ .++..+-+.|+++.|..+++..++. .|+ ...|..-.+.+...|+.++|...++..++++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 44444443 4556677889999999999888754 455 4566666688889999999999988888775
No 83
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=1.8e-07 Score=74.78 Aligned_cols=214 Identities=8% Similarity=-0.002 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
++..+-..+...+..++|+.++.+++..... +..+|+.--.++...| ++++++..++.+.+.+ +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3444444455566667777777776665322 3344554444555555 4566777777666654 33445565555555
Q ss_pred HhcCCh--HHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---CC
Q 020193 133 LNAGYL--ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA---GM 207 (329)
Q Consensus 133 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 207 (329)
.+.|+. ++++..++++.+.... +..+|+...-++...|+++++++.++++++.++ .+...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhcccccc
Confidence 555542 4556666666665443 566666666666666667777777777666554 3444555444444332 11
Q ss_pred H----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 020193 208 I----DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR----GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273 (329)
Q Consensus 208 ~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (329)
. ++...+..+++...+. |...|+.+...+... +...+|..++.+....+ +.+......|+..|+
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 1 2344444444443322 444555555444442 22334555555544332 223444444555544
No 84
>PLN02789 farnesyltranstransferase
Probab=99.15 E-value=2.4e-07 Score=74.12 Aligned_cols=215 Identities=7% Similarity=0.023 Sum_probs=160.9
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
++..+-..+...+..++|+.+.+++++.+ |-+..+|+.--.++...| ++++++..++++.....+ +..+|+.-...+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 34455566667889999999999999887 777788887777777777 689999999999987644 556777665556
Q ss_pred HhcCch--hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc---CC
Q 020193 98 CSSGKM--REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS---GE 172 (329)
Q Consensus 98 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 172 (329)
.+.|.. +++..+++.+.+.. +-+..+|+....++...|+++++++.++++++.++. +...|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 67888998988776 567889999999999999999999999999998766 677777766665544 22
Q ss_pred ----HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 020193 173 ----VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA----GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239 (329)
Q Consensus 173 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (329)
.++..+...+.+...+ -+...|+.+...+... +...+|...+.+....++ .+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2456677767766554 5677888888888763 344668888877666443 256667777777764
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=5.1e-08 Score=80.34 Aligned_cols=223 Identities=13% Similarity=0.108 Sum_probs=128.0
Q ss_pred HHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhH
Q 020193 26 EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105 (329)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (329)
.+.+.|++.+|.-.|+..++.+ |-+...|-.|.......++-..|+..+++..+.... |....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3457777888888888887776 777788888888888888777888888777766433 55666777777777777777
Q ss_pred HHHHHHHHHhCCCCC--------CcccHHHHHHHHHhcCChHHHHHHHHHHH-HcCCccCHHhHHHHHHHHHccCCHHHH
Q 020193 106 AQEFLQEMSDKGFNP--------PVRGRDLLVQGLLNAGYLESAKQMVNKMI-KQGFVLDLETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 106 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (329)
|.+.++.-+....+- +...-.. ..+.....+....++|-++. +.+..+|+.+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777777665432100 0000000 01111112233333333332 233334555555666666666666666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
...|+......+ -|..+||.|...+....+..+|..-|.+..+..+.. ..+...|.-+|...|.+++|.+.|-..+
T Consensus 450 iDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 666666655433 345566666666666666666666666665532211 2233334455666666666665554443
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=3.7e-06 Score=70.71 Aligned_cols=300 Identities=12% Similarity=0.119 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc----------------------hHHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK----------------------LFHGAYALI 75 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~ 75 (329)
..|++|.+.|.+.|.++.|..+|++....- .++.-|..+.++|+.-. +++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 457889999999999999999998877542 33444444544444311 112223333
Q ss_pred HHHHHcCC-----------ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC------cccHHHHHHHHHhcCCh
Q 020193 76 RRMIRKGF-----------VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP------VRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 76 ~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~ 138 (329)
+.+..... +.+...|..-.. ...|+..+-...+.+..+. +.|. ...|..+.+.|-..|+.
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33332210 001122222211 2235556666666666543 2221 34577888899999999
Q ss_pred HHHHHHHHHHHHcCCccC---HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----------CC-------chhhHHHH
Q 020193 139 ESAKQMVNKMIKQGFVLD---LETFNSLIETICKSGEVEFCVEMYYSVCKLGL----------CA-------DVSTYKIL 198 (329)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~-------~~~~~~~l 198 (329)
+.|..+|++..+-..+.- ..+|......-.+..+++.|+++.+.....-- .| +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887644321 34566666666678888888888877643211 11 23455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhc---
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR-PVYTMLITMCGR--- 274 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 274 (329)
+..--..|-++....+|+++.+..+. ++.........+-.+.-++++.+++++-...-..|+. ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 66666778888888999998877654 4444333444455666678888888776665334444 456666655543
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh-h-hHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 275 GGRFVEAANYLVEMTEMGLTPIS-R-CFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
....+.|..+|++..+ |++|.. . .|-.....=.+.|....|..+++...
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468889999999988 666653 2 23333333345677788888877643
No 87
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.06 E-value=1.8e-06 Score=80.47 Aligned_cols=308 Identities=12% Similarity=0.001 Sum_probs=194.8
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCC------Ccc--HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh---
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNC------QQC--VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK--- 87 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 87 (329)
........+...|++++|...+......-- .+. ......+...+...|++++|...+++....-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334445556678899999988887653210 111 122233344566789999999999887763211121
Q ss_pred -HHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--CcccHHHHHHHHHhcCChHHHHHHHHHHHHc----CCc--c
Q 020193 88 -RTYAILVNAWCSSGKMREAQEFLQEMSDKGF---NP--PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GFV--L 155 (329)
Q Consensus 88 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~ 155 (329)
...+.+...+...|++++|...+++.....- .+ ...+...+...+...|+++.|...+++..+. +.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 2345566677789999999999888764311 11 1234455667788899999999998876552 211 1
Q ss_pred -CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChh
Q 020193 156 -DLETFNSLIETICKSGEVEFCVEMYYSVCKL----GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--HKPFPS 228 (329)
Q Consensus 156 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 228 (329)
....+..+...+...|++++|...+.+.... +.......+..+...+...|+++.|...++...... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 1233445556677789999999988886542 111123345556677888999999999988875421 111111
Q ss_pred --hH--HHHHHHHHccCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCC-
Q 020193 229 --LY--APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR---PVYTMLITMCGRGGRFVEAANYLVEMTE----MGLTPI- 296 (329)
Q Consensus 229 --~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~- 296 (329)
.. ...+..+...|+.+.|..++............ ..+..+..++...|++++|...+++... .|..++
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 00 11224445678899999887765542111111 1134566778889999999999988764 233322
Q ss_pred hhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
..+...+..++.+.|+.++|.+.+.....+
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777788899999999999888776654
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.06 E-value=5e-06 Score=69.91 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=70.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR-PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 308 (329)
+-.+++.+-..|+++.|...++....+ .|+. ..|..-.+.+.+.|+.++|..++++..+.. .||...-..-..-..
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 445677888999999999999998876 4443 445555688899999999999999998765 356555545566677
Q ss_pred hCCchhHHHHHHHHHh
Q 020193 309 NCGKHDLAEKIELLEV 324 (329)
Q Consensus 309 ~~g~~~~a~~~~~~~~ 324 (329)
++.+.++|.++..+..
T Consensus 451 rAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFT 466 (700)
T ss_pred HccccHHHHHHHHHhh
Confidence 8889999988866543
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.03 E-value=7e-07 Score=81.01 Aligned_cols=231 Identities=12% Similarity=0.077 Sum_probs=173.1
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNP---PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
+...|-..|......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4557888888888889999999998888653 1111 1346777777777788888888999988876 22456788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHcc
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-PFPSLYAPIIKGMFRR 240 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 240 (329)
.|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.+..+.-++ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 888999999999999999999987532 45678888888999999999999999888765221 1233444455566788
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCchhHHHH
Q 020193 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
|+.+++..+|+..... .|--...|+.+++.-.++|+.+.+..+|++.+..++.|. ...|...++.=...|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999988876 334667899999999999999999999999998887765 3456666665556676666555
Q ss_pred HH
Q 020193 319 IE 320 (329)
Q Consensus 319 ~~ 320 (329)
+-
T Consensus 1693 VK 1694 (1710)
T KOG1070|consen 1693 VK 1694 (1710)
T ss_pred HH
Confidence 53
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.03 E-value=5.1e-07 Score=80.53 Aligned_cols=221 Identities=10% Similarity=0.078 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
.+...+..|+..+...+++++|.++.+...+.. |.....|-.+...+.+.++.+.+..+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 355677888888888888888888888666654 44444554444455565554443332 333
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHH
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (329)
.......++..+..+...+...+ -+...+..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+.-.|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 33444444444444444454432 34456667777777777777777777777777633 677777777777777 777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------CCCChhhHHHHHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-------------------HKPFPSLYAPIIK 235 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~l~~ 235 (329)
+|.+++.+.... +...+++..+..+|.++.... ..--..++-.+-.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 777777766543 233334444444444444332 1112333444445
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 020193 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273 (329)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (329)
.|....+++++..+++.+.+.... |.....-++.+|.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 555556666666666666655322 4444444555444
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.8e-06 Score=70.87 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=79.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-------------------------HHHHHHHHccCChhHHHHHHHHHH
Q 020193 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY-------------------------APIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
.+|.+.++++.+...|.+.......|+...- ..-...+.+.|++..|...|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3555566777777777765544333332210 011234567778888888888877
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
... +-|...|..-.-+|.+.|.+..|++-.+..++.. ++....|..=..++....+|+.|.+.+....+++
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 764 4567777777778888888888777777766653 2335555555556666677777777777766654
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.03 E-value=6.3e-08 Score=81.96 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=183.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHH
Q 020193 11 YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90 (329)
Q Consensus 11 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (329)
.+++|-...-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..++ +||+..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 3566666777888899999999999999998854 4667888999999999999998887773 7788889
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
..+.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- ...+|-.+.-+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHH
Confidence 98888887777788888887765432 1122222334478899999999887766432 567888888888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
++++.|.+.|.......+ .+...||.+-.+|.+.++..+|...+.+..+.+.. +...|...+....+.|.++.|.+.+
T Consensus 533 ek~q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999998877543 45678999999999999999999999999888743 5667777778888999999999998
Q ss_pred HHHHHcCC-CCChhhHHHHHHHH
Q 020193 251 SEMKIKGH-PPNRPVYTMLITMC 272 (329)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~l~~~~ 272 (329)
.++..... .-|......++...
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHH
Confidence 88765411 11444444444443
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.03 E-value=1.9e-07 Score=72.32 Aligned_cols=185 Identities=18% Similarity=0.059 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH---HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh--HHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK--RTY 90 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 90 (329)
.+..+..+...+...|++++|...|+++.... |.+. .++..+..++...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566666677777777777777777776654 3222 35566677777777777777777777765322111 133
Q ss_pred HHHHHHHHhc--------CchhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 91 AILVNAWCSS--------GKMREAQEFLQEMSDKGFNPPV-RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 91 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
..+..++... |+.+.|.+.++.+.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 3344444433 56667777777766543 222 12211111000 000 00 00112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLC--ADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
.+...+.+.|++++|...++...+..+. .....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556788889999999999998776431 23567888889999999999999988887654
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.3e-07 Score=76.62 Aligned_cols=252 Identities=14% Similarity=0.104 Sum_probs=185.7
Q ss_pred HHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 020193 61 ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
-+.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456788899999999988887644 77889999999999999899999999998875 5567778888888999999999
Q ss_pred HHHHHHHHHHcCCcc--------CHHhHHHHHHHHHccCCHHHHHHHHHHHH-HcCCCCchhhHHHHHHHHHhcCCHHHH
Q 020193 141 AKQMVNKMIKQGFVL--------DLETFNSLIETICKSGEVEFCVEMYYSVC-KLGLCADVSTYKILIPAVSKAGMIDEA 211 (329)
Q Consensus 141 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (329)
|++.++.-+...++- +...-.. ........+....++|-++. ..+..+|+.....|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998776542110 0000000 11122223445555665554 344457888888888889999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR-PVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
.+.|+.+....+. |..+||.|...++...+.++|+..|.++++. .|+. .....|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999886543 6788999999999999999999999999986 5553 4556678889999999999998877552
Q ss_pred ---C------CCCCChhhHHHHHHHHHhCCchhHHHHH
Q 020193 291 ---M------GLTPISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 291 ---~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
. +..++...|..|=.++.-.++.|.+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2 1122345777777777777777755444
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.02 E-value=8.9e-07 Score=80.37 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=186.6
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc-----ChHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020193 40 FNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-----DKRTYAILVNAWCSSGKMREAQEFLQEMS 114 (329)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (329)
|++..... |.+...|-..|....+.++.++|.++.++.+.. +.+ -...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444443 667788999999999999999999999998864 222 22467777877777888888999999998
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-chh
Q 020193 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVS 193 (329)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 193 (329)
+.. -.-..|..|...|.+.+.+++|-++++.|.+.-- -....|...+..+.+.++-+.|..++.+..+.-+.- ...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 864 2245688899999999999999999999998732 477899999999999999999999999988753321 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR--PVYTMLITM 271 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 271 (329)
.....+..-.+.|+.+++..+|+......++ -...|+.++..-.+.|+.+.+..+|++....++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 5556666778899999999999999877544 6788999999999999999999999999998776543 345555554
Q ss_pred HhccCCHHHHHHH
Q 020193 272 CGRGGRFVEAANY 284 (329)
Q Consensus 272 ~~~~~~~~~a~~~ 284 (329)
=-..|+-..+..+
T Consensus 1681 Ek~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYV 1693 (1710)
T ss_pred HHhcCchhhHHHH
Confidence 4455665444443
No 96
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=5.2e-06 Score=69.85 Aligned_cols=296 Identities=16% Similarity=0.189 Sum_probs=158.7
Q ss_pred HHHHHHccCchhHHHHHHHHhhhc-CCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAF-NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
-+..+.++|++......|+..... .+.....+|...+......+-++-+..+|++.++. ++..-+..+..++..+
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d 183 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSD 183 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhcc
Confidence 334444555555555555555432 11222344555555555555555555555555543 2222444455555555
Q ss_pred chhHHHHHHHHHHhC----------------------------------------CC--CCC--cccHHHHHHHHHhcCC
Q 020193 102 KMREAQEFLQEMSDK----------------------------------------GF--NPP--VRGRDLLVQGLLNAGY 137 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~----------------------------------------~~--~~~--~~~~~~l~~~~~~~~~ 137 (329)
++++|-+.+...... |+ -+| ...|.+|.+.|.+.|+
T Consensus 184 ~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 184 RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhh
Confidence 555555544443211 10 011 2346667777777777
Q ss_pred hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC----------------------HHHHHHHHHHHHHcCC-------
Q 020193 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----------------------VEFCVEMYYSVCKLGL------- 188 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~------- 188 (329)
+++|.+++++.... ..+..-|+.+..+|+.-.. ++-...-|+.+...++
T Consensus 264 ~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 264 FEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 77777777776655 2234444444444433111 1112222222222110
Q ss_pred ----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020193 189 ----CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF------PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258 (329)
Q Consensus 189 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 258 (329)
+.++..|..-+. ...|+..+-...|.++... +.|. ...|..+.+.|...|+++.|..+|++......
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 012222222222 1235666667777776654 2221 23577788889999999999999999887643
Q ss_pred CCC---hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----------C-------ChhhHHHHHHHHHhCCchhHHHH
Q 020193 259 PPN---RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT----------P-------ISRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 259 ~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
+-- ..+|-.....=.+..+++.|+++.++..-..-. | +...|..+++.-...|-++.-+.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 311 233444444445678888888888776521111 1 23456667777777888888888
Q ss_pred HHHHHhhhc
Q 020193 319 IELLEVSLR 327 (329)
Q Consensus 319 ~~~~~~~~~ 327 (329)
+++....++
T Consensus 499 vYdriidLr 507 (835)
T KOG2047|consen 499 VYDRIIDLR 507 (835)
T ss_pred HHHHHHHHh
Confidence 888877665
No 97
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=5.4e-06 Score=64.86 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=54.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCChhhHH-HHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhC
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT-MLITMCGRGGRFVEAANYLVEMTEMGLTPIS-RCFDLVTDGLKNC 310 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 310 (329)
+.++++..|++.+|+++|-.+....++ |..+|. .|.++|.+.+.++.|+.++-.+. -+.+. .....+..-|.++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHH
Confidence 556666677777777777666554444 444554 34567777788777777664442 12222 2334445566677
Q ss_pred CchhHHHHHHHHHhhhcc
Q 020193 311 GKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 311 g~~~~a~~~~~~~~~~~~ 328 (329)
+.+--|-+.+.....+++
T Consensus 475 ~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHHHhhhHHHccCC
Confidence 777766666666555543
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=7.7e-07 Score=75.63 Aligned_cols=216 Identities=15% Similarity=0.039 Sum_probs=145.3
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
..+...+...|-...|..+++++. .|.-.+.+|...|+.++|..+..+..+. +|++..|..+.......
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345566667777777777777654 3556778888888888888888777773 66778888877777666
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+. .-..+|-.+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHH
Confidence 6677777777664332 111111122335777777777776555432 24566666777777777777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 251 SEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
...... -+-+...||.+-.+|.+.++-.+|...+++..+.+ .-+-..|...+-...+.|.+++|.+.+..+..++
T Consensus 543 ~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 777654 23355677777777877777777888777777666 3355566666666777777877777777666554
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=2.4e-06 Score=65.22 Aligned_cols=261 Identities=13% Similarity=0.118 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHH-HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYN-SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
+....+.|..+|-...++..|-..++++-... |...-|. --...+.+.+.+..|+.+...|... |+...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 66778888999999999999999999987754 4444333 2346677888899999998877643 2222212222
Q ss_pred H--HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 95 N--AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 95 ~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
. .....+++..+..++++....| +..+.+...-...+.|+++.|.+-|+...+-+--.+...|+..+.. .+.++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~q 193 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQ 193 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-Hhhhh
Confidence 2 2345678888888888776443 3444444455567889999999999988876433355667665544 46688
Q ss_pred HHHHHHHHHHHHHcCCCC-------------ch---------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 020193 173 VEFCVEMYYSVCKLGLCA-------------DV---------------STYKILIPAVSKAGMIDEAFRLLHNLVED-GH 223 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~ 223 (329)
++.|++...++.+.|+.. |+ ..+|.-...+.+.++++.|.+-+-.|... ..
T Consensus 194 yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 194 YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 899999998888776421 11 12222333345778888888888777633 33
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 224 KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
..|+.|...+.-.- -.+++....+-+.-+...+. -...||..++-.|++..-++.|-.++.+
T Consensus 274 elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 274 ELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45667766554332 23445555554555555432 3457888888899999888888887755
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.92 E-value=1.4e-06 Score=65.01 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH-HHhcCC--HHHHH
Q 020193 136 GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA-VSKAGM--IDEAF 212 (329)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~ 212 (329)
++.+++...+++..+.+.. +...|..+...|...|++++|...|++..+..+ .+...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3344444444444444322 444555555555555555555555555544432 233444444443 233343 25555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
+++++..+.+.. +...+..+...+...|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 555555544332 3444444555555555555555555555444
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2.5e-09 Score=54.22 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=19.4
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKC 43 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 43 (329)
|++||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1e-06 Score=68.31 Aligned_cols=188 Identities=11% Similarity=-0.035 Sum_probs=129.8
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc-c-ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc---
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-P-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--- 123 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 123 (329)
......+..+...+...|++++|...|+++...... | ...++..+..++...|++++|...++.+.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 345667788888899999999999999998875321 1 12466778889999999999999999998764 22222
Q ss_pred cHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhH
Q 020193 124 GRDLLVQGLLNA--------GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195 (329)
Q Consensus 124 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 195 (329)
++..+..++... |++++|.+.++.+.+.... +...+..+..... ... .. ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 345555555544 6788888888888876322 2222222211100 000 00 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 196 KILIPAVSKAGMIDEAFRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
..+...+.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2456778999999999999999987632 223568889999999999999999999988765
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=9.7e-07 Score=66.01 Aligned_cols=160 Identities=16% Similarity=0.059 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
..+-..+...|+-+....+........ +.+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566666666666666665543322 2344445556677777777777777777766654 34677777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
|+.+.|..-|.+..+..+ -+....+.+.-.+.-.|+.+.|..++......+.. +..+-..+.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777666433 34556666666666677777777777776655432 4555556666677777777777766
Q ss_pred HHHH
Q 020193 251 SEMK 254 (329)
Q Consensus 251 ~~~~ 254 (329)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=2.2e-05 Score=64.93 Aligned_cols=130 Identities=13% Similarity=0.064 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (329)
.+|...+....+..-+..|..+|.++.+.+..+ +..++++++..+| .++.+-|.++|+--... ...++.--...+.-
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDF 444 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHH
Confidence 467777777788888999999999999887766 6677888888666 56789999999877655 23333444567777
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 272 CGRGGRFVEAANYLVEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
+...|+-..+..+|++....++.|+ ...|..+++-=..-|+...+.++.+.+.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7888998999999999998877766 5799999998888999999998876654
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=9.4e-08 Score=67.43 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (329)
+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|+.....+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 33455566666666666666666665532 255566666666666666666666666666654 4455666666666666
Q ss_pred cCChHHHHHHHHHHHHc
Q 020193 135 AGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~ 151 (329)
.|++++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666655
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.8e-09 Score=54.05 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=15.4
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
|+.||..||+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=1.9e-06 Score=64.25 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=74.1
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCC--hHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-LNAGY--LESA 141 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 141 (329)
.++.+++...++...+.+ +.|...|..+...+...|++++|...+++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555666666555543 2356666666667777777777777777666654 34555555555543 45555 3667
Q ss_pred HHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
.+++++..+.+.. +...+..+...+...|++++|...|+++.+...
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777766666443 556666666666667777777777776666543
No 108
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.87 E-value=9.8e-06 Score=69.55 Aligned_cols=254 Identities=11% Similarity=0.076 Sum_probs=166.7
Q ss_pred hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHH
Q 020193 33 VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112 (329)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (329)
..++++.+++..+.+ +.|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.
T Consensus 460 h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 345677777777666 5555555555556777788888888888888775566777888888888888888888888776
Q ss_pred HHhCCCCCC--------------------cccHHHHHHHHHh-----------------------cCChHHHHHHHHHHH
Q 020193 113 MSDKGFNPP--------------------VRGRDLLVQGLLN-----------------------AGYLESAKQMVNKMI 149 (329)
Q Consensus 113 ~~~~~~~~~--------------------~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 149 (329)
....- +.| ..|+..++..+-. ..+..++.+....+.
T Consensus 539 al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 539 ALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 65431 111 1112222211110 001111111111110
Q ss_pred --------HcC---------Cc--cC------HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 020193 150 --------KQG---------FV--LD------LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 150 --------~~~---------~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (329)
..| .. |+ ...|......+.+.+..++|...+.+..... +.....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 001 01 11 1124445556667777777777776665543 2455666666677888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH--HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 020193 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFC--FFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAA 282 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 282 (329)
.|...+|.+.|......++. ++....++...+.+.|+..-|.+ ++.++.+.+ +.+...|-.+...+.+.|+.+.|-
T Consensus 697 ~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHH
Confidence 89999999999988775433 46678889999999999888887 999999875 448889999999999999999999
Q ss_pred HHHHHHHhC
Q 020193 283 NYLVEMTEM 291 (329)
Q Consensus 283 ~~~~~~~~~ 291 (329)
+.|....+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999987753
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=6.7e-07 Score=66.84 Aligned_cols=167 Identities=16% Similarity=0.087 Sum_probs=135.1
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
|-|... ..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++..... ++|..+|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 445555 667777888888888888877755432 3355666678899999999999999999998775 7889999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (329)
.-+|.+.|+.+.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+. -|...-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 99999999999999999999887544 667788888888889999999999998877644 5677778888888999999
Q ss_pred HHHHHHHHHHHh
Q 020193 209 DEAFRLLHNLVE 220 (329)
Q Consensus 209 ~~a~~~~~~~~~ 220 (329)
+.|.++...-..
T Consensus 219 ~~A~~i~~~e~~ 230 (257)
T COG5010 219 REAEDIAVQELL 230 (257)
T ss_pred HHHHhhcccccc
Confidence 999988766443
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=2.8e-05 Score=72.75 Aligned_cols=297 Identities=14% Similarity=0.019 Sum_probs=175.3
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC------ccCh--HHHHHHHHHHHhc
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF------VPDK--RTYAILVNAWCSS 100 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~ 100 (329)
..|+++.+..+++.+.......+..........+...|+++++..++......-- .+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 3455555555554442111111222233344555677889999888887654311 1111 1222233455678
Q ss_pred CchhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-ccCHHhHHHHHHHHHccC
Q 020193 101 GKMREAQEFLQEMSDKGFNPPV----RGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GF-VLDLETFNSLIETICKSG 171 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~ 171 (329)
|++++|...++.....-...+. ...+.+...+...|++++|...+.+.... |. .....+...+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999887653111111 23455666677899999999998887643 11 111234455667788899
Q ss_pred CHHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHHHcc
Q 020193 172 EVEFCVEMYYSVCKL----GLC--A-DVSTYKILIPAVSKAGMIDEAFRLLHNLVED--GHKP--FPSLYAPIIKGMFRR 240 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~ 240 (329)
+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 999999988876542 211 1 2233445556677789999999998886543 1111 233444566677889
Q ss_pred CChhHHHHHHHHHHHcCCCC-ChhhH-----HHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhCC
Q 020193 241 GQFDDAFCFFSEMKIKGHPP-NRPVY-----TMLITMCGRGGRFVEAANYLVEMTEMGLTPI---SRCFDLVTDGLKNCG 311 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 311 (329)
|+++.|...+.......... ....+ ...+..+...|+.+.|..++........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999888875431110 11111 1112334557889999888776543211111 112456777888999
Q ss_pred chhHHHHHHHHHhh
Q 020193 312 KHDLAEKIELLEVS 325 (329)
Q Consensus 312 ~~~~a~~~~~~~~~ 325 (329)
++++|...++....
T Consensus 706 ~~~~A~~~l~~al~ 719 (903)
T PRK04841 706 QFDEAEIILEELNE 719 (903)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988776554
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=5e-06 Score=73.44 Aligned_cols=148 Identities=9% Similarity=0.010 Sum_probs=97.1
Q ss_pred CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHH
Q 020193 48 CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127 (329)
Q Consensus 48 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (329)
++.++..+..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|....++..+.. +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3555677777777777777777777777777765221 34456666777777777777777777777664 344555566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 199 (329)
+..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+..- +....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~-~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG-DGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC-cchHHHHHHH
Confidence 66777777777777777777776432 2466777777777777777777777777765432 4444444443
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=8e-06 Score=61.35 Aligned_cols=250 Identities=15% Similarity=0.130 Sum_probs=160.3
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
++-+.-.|.+..++..-+...... .+...-.-+.++|...|.+.....-. .. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchh
Confidence 345555788887776665554331 33444444667777777665544322 22 2234444444444444444444
Q ss_pred hHH-HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 104 REA-QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 104 ~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+.- .++.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3445555544433333333444567888999999999887722 333333444556778889999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020193 183 VCKLGLCADVSTYKILIPAVSK----AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 258 (329)
|.+. .+..|.+.|..++.+ .+....|.-+|++|.++ ..|++.+.+-...++...|++++|..+++..+....
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9874 456677777776654 45688999999998764 567888888889999999999999999999988744
Q ss_pred CCChhhHHHHHHHHhccCCHHH-HHHHHHHHHh
Q 020193 259 PPNRPVYTMLITMCGRGGRFVE-AANYLVEMTE 290 (329)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 290 (329)
. ++.+...++.+-...|...+ ..+.+..+..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 66777777766666665544 4455666554
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=6.1e-06 Score=61.97 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=38.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 020193 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR----RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (329)
.+..+.+-|.+.+++|.+.. +..+.+.|..++.+ .+....|.-+|++|.++ .+|+..+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 34444555555555554421 23333333333322 23344455555555433 344445555555555555555
Q ss_pred HHHHHHHHHHHh
Q 020193 279 VEAANYLVEMTE 290 (329)
Q Consensus 279 ~~a~~~~~~~~~ 290 (329)
++|..++++...
T Consensus 224 eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 224 EEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHHHHh
Confidence 555555555444
No 114
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.9e-05 Score=61.98 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 267 MLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
.+.++.+..|.+.+|.++|-......++-+......|.++|.++++.+.|.+++-.
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 36677888999999999997776544443344445677889999999998877544
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.80 E-value=1.3e-06 Score=61.70 Aligned_cols=96 Identities=13% Similarity=-0.110 Sum_probs=48.6
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+..+...+...|++++|...|+.....+ |.+...|..+..++...|++++|...|+.....+. .+...+..+..++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Confidence 34444444555555555555555555444 44455555555555555555555555555554332 24444555555555
Q ss_pred hcCchhHHHHHHHHHHhC
Q 020193 99 SSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (329)
..|++++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.5e-05 Score=63.28 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=133.2
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
..-+=++.+...|++++|.+...++...+ |.+...+..-+-++++.+.+++|+.+.+.-... ..+..-+-.-..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444677788899999999999999877 777888888888999999999999665442211 111111122344556
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc------------------------
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV------------------------ 154 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 154 (329)
+.+..++|+..++-.. +.+..+...-.+.+.+.|++++|+++|..+.+.+..
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 7889999998887221 123346666778889999999999999988654321
Q ss_pred ---cCHHhHHHHH---HHHHccCCHHHHHHHHHHHHHcC--------CC-----Cch-hhHHHHHHHHHhcCCHHHHHHH
Q 020193 155 ---LDLETFNSLI---ETICKSGEVEFCVEMYYSVCKLG--------LC-----ADV-STYKILIPAVSKAGMIDEAFRL 214 (329)
Q Consensus 155 ---~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~--------~~-----~~~-~~~~~l~~~~~~~~~~~~a~~~ 214 (329)
....+|..+. ..+...|++.+|+++++...+.+ .. ... ..-..+.-++...|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 0112333333 34566899999999999873211 10 001 1223455567788999999999
Q ss_pred HHHHHhCCC
Q 020193 215 LHNLVEDGH 223 (329)
Q Consensus 215 ~~~~~~~~~ 223 (329)
+..++....
T Consensus 247 y~~~i~~~~ 255 (652)
T KOG2376|consen 247 YVDIIKRNP 255 (652)
T ss_pred HHHHHHhcC
Confidence 999887653
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=3.8e-06 Score=74.17 Aligned_cols=163 Identities=11% Similarity=0.068 Sum_probs=123.3
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
.++.++..+-.|.....+.|..++|..+++...+.. |.+......+...+.+.+++++|...+++....... +.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 345668888888888888899999999999888876 667788888888888899999999998888877533 666777
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.. .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------ 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------
Confidence 78888888899999999999888743 4457788888888888899999999988887763 223444444432
Q ss_pred CHHHHHHHHHHHH
Q 020193 172 EVEFCVEMYYSVC 184 (329)
Q Consensus 172 ~~~~a~~~~~~~~ 184 (329)
+...-...++++.
T Consensus 231 ~~~~~~~~~~~~~ 243 (694)
T PRK15179 231 DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHcC
Confidence 2333444555554
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=1.5e-06 Score=60.95 Aligned_cols=92 Identities=17% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (329)
.+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33333344444444444444433322 1133333333444444444444444444333332 222333333334444444
Q ss_pred ChHHHHHHHHHHHH
Q 020193 137 YLESAKQMVNKMIK 150 (329)
Q Consensus 137 ~~~~a~~~~~~~~~ 150 (329)
++++|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444443333
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=2e-06 Score=60.22 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...++.....+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 45667778888999999999999999998877 7789999999999999999999999999988765 446778888899
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (329)
++...|++++|...++...+.. |+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 9999999999999999998864 5544433
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=6.2e-05 Score=66.97 Aligned_cols=276 Identities=16% Similarity=0.137 Sum_probs=137.7
Q ss_pred HHHhhhhhCCCC--CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 020193 3 KTIELMKPYNLS--VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRM 78 (329)
Q Consensus 3 ~~~~~m~~~g~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 78 (329)
++++...+.+++ -||+..+..+.++...+-..+-+++++++.-.+ ...+...-|.|+-...+. +..++.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHh
Confidence 345555555543 467778888888888888888888888876432 122333445555444443 344555666655
Q ss_pred HHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---------------------CCCCcccHHHHHHHHHhcCC
Q 020193 79 IRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---------------------FNPPVRGRDLLVQGLLNAGY 137 (329)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~ 137 (329)
..-+ .|+ +...+...+-+++|..+|++.-..+ --..+..|+.+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 4332 112 2233344444555555554432110 00123344444444444444
Q ss_pred hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
..+|.+-|-+.. |+..|...+....+.|.|++..+.+....+..-.|.. =+.|+-+|.+.++..+.+.++
T Consensus 1120 v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1120 VKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred hHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh--
Confidence 444444433221 4444555555555555555555544444433322222 234444555555444433332
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh
Q 020193 218 LVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297 (329)
Q Consensus 218 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 297 (329)
.-||......+..-|...+.++.|.-+|.. ..-|..|...+...|++..|...-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 123444444444445555555544444332 233555555555666666655544332 345
Q ss_pred hhHHHHHHHHHhCCchhHH
Q 020193 298 RCFDLVTDGLKNCGKHDLA 316 (329)
Q Consensus 298 ~~~~~l~~~~~~~g~~~~a 316 (329)
.+|..+-.+|...+.+..|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH
Confidence 6777777777777666655
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.8e-05 Score=71.09 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=157.1
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh-HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK-RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL 127 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (329)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 456788999999999999999999999977765 3333 3333333466666665554443 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
++.......++..+..+...+.+. .-+...+..+..+|-+.|+.+++..+|+++.+..+ -|+.+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-h
Confidence 333333444454444444555554 22455888999999999999999999999999874 7889999999999999 9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHH---H--HccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHH
Q 020193 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKG---M--FRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 281 (329)
+++|.+++.+....-+ +..-|+.+... + ....+.+.-.++.+.+... |..--..++-.+-..|-..++|+++
T Consensus 165 L~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 165 KEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 9999999998876411 11111111111 1 1222334444444444433 3333345566666778888999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 282 ANYLVEMTEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~~~~~~~l~~~~~ 308 (329)
..+++.+.+.... |......++.+|.
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 9999999986533 6667777888776
No 122
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2.7e-05 Score=69.17 Aligned_cols=203 Identities=12% Similarity=0.070 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
+..|..+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++-.+.+....+....|.. -+.++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHH
Confidence 356777777777777777776655332 35667888888888888888888887777766544443 3567778
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (329)
|++.++..+..+.+. -|+......+..-|...+.++.|.-+|.. ...|..|...+...|++..|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 888887776655442 26666666777777777777777666643 23455666666667777666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
.+.-++.. +..||..+-.+|...+.+.-| .|...++.....-...++.-|...|-+++-..+++...
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 65544332 445566655565555444322 23333333334444555555555555555555544433
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=0.00011 Score=57.61 Aligned_cols=273 Identities=12% Similarity=0.066 Sum_probs=184.6
Q ss_pred CCCCHHHHHHH---HHHHHccCchhHHHHHHHHhhhcCCCccHH-HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh-
Q 020193 13 LSVSPQTLSLI---IEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK- 87 (329)
Q Consensus 13 ~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 87 (329)
+..||..|.++ ...|...|+...|+.=+....+. +||-. .--.-...+.++|.+++|..=|+..++....-+.
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 34455555554 34577778888888777777765 45532 2223345677899999999999998876431111
Q ss_pred -HH------------HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 88 -RT------------YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 88 -~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
.. ....+..+.-.|+...|+.....+.+.. +-+...+..-..+|...|++..|+.-++...+....
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 11 2233455667789999999999998864 567778888889999999999999888877766433
Q ss_pred cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh----hHHHH---------HHHHHhcCCHHHHHHHHHHHHhC
Q 020193 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS----TYKIL---------IPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
+...+.-+-..+...|+.+.++...++..+.+ ||.. .|..+ +......++|.++..-.+...+.
T Consensus 222 -nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 222 -NTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred -chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 55566666777788899888888888887743 4432 12111 12234556777777777777765
Q ss_pred CCCCChh---hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 222 GHKPFPS---LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 222 ~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
.+..... .+..+-.++...+++.+|++...+.++. .+.|..++.-=..+|.-...++.|+.-|+...+.+
T Consensus 299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 4432222 3444556667778888999888888765 23347777777778888888888888887776543
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=7e-05 Score=61.32 Aligned_cols=200 Identities=15% Similarity=0.083 Sum_probs=115.8
Q ss_pred chhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHH
Q 020193 32 LVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
++.++...-+.+...+ -.|+...+...+.+......-..+..++....+. .-...-|. ....+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHH
Confidence 3444444445554322 1345555555555444433333333332222221 11122233 33344466777777777
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
++.+.... |-|+..+......+.+.|+.++|.+.++++.... |+ ......+.+++.+.|++.+|+.+++......+
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 77776653 4455555566677777777777777777777663 33 45566667777777777777777777766543
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
.|+..|..|..+|...|+..++..-..+. +...|+++.|...+....+.
T Consensus 406 -~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 -EDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -CCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 56777777777777777777766655443 33456666666666666554
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=1.2e-05 Score=69.68 Aligned_cols=240 Identities=14% Similarity=0.130 Sum_probs=155.1
Q ss_pred CHHHHHHHHH--HHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc---------CCc
Q 020193 16 SPQTLSLIIE--EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK---------GFV 84 (329)
Q Consensus 16 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 84 (329)
|+.+-..+++ .|...|+.+.|.+-.+.+.. ..+|..+.+.|.+.++++-|.-.+-.|... .-.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445455543 45677888888777666543 568999999999988888776666555421 112
Q ss_pred cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHH
Q 020193 85 PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 164 (329)
|+ .+=..+.......|..++|..+|++.++.+ .|=+.|-..|.+++|.++-+.--.-. -..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 22 233334445567899999999999887643 44566777899999988876432221 234666666
Q ss_pred HHHHccCCHHHHHHHHHHHHH----------cC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 020193 165 ETICKSGEVEFCVEMYYSVCK----------LG---------LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (329)
..+-..++.+.|++.|++... .. -..|...|.......-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 667777888888888776321 11 112445566666666677777777777765432
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
|-+++...|-.|+.++|-++-++-- |....-.+.+.|-..|++.+|..+|.+..
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3445666667777777776655422 44555667777777777777777776654
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=1.9e-05 Score=69.81 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc-cChHHHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-PDKRTYAILVNA 96 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 96 (329)
..|..|...|+...+...|...|+...+.+ +.+...+......|++..+++.|..+.-..-+.... .-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 568888888888888888999999998887 778888889999999999999998884333322110 011123333445
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHH--HHHHHHccCCHH
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS--LIETICKSGEVE 174 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~ 174 (329)
+...++...+..-|+...+.. |.|...|..+..+|.+.|++..|.++|.+..... |+. +|.. ....-+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHH
Confidence 667778888888888887765 5677888889999999999999999998887763 222 2222 122335567777
Q ss_pred HHHHHHHHHH
Q 020193 175 FCVEMYYSVC 184 (329)
Q Consensus 175 ~a~~~~~~~~ 184 (329)
++...+..+.
T Consensus 648 eald~l~~ii 657 (1238)
T KOG1127|consen 648 EALDALGLII 657 (1238)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.57 E-value=2e-05 Score=67.80 Aligned_cols=190 Identities=17% Similarity=0.145 Sum_probs=101.8
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (329)
.....|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|-+.- .++-.+..|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 34455666666666665543 223345556666666666666666665421 2344556666677776666
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020193 178 EMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257 (329)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (329)
++-++.. |+......|..-..-.-++|++.+|+++|-.+. .|+. .|..|-+.|..+..+++..+-...
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 6655443 233334445555555556666666666553321 1222 345566666666666555543321
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
.-..|...+..-+...|+...|..-|-+.. -|..-+..|..++.|++|-++.+
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 112344555566666777777766554432 24444555666666666655543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=8.5e-05 Score=60.84 Aligned_cols=238 Identities=14% Similarity=0.071 Sum_probs=159.4
Q ss_pred HHHHccC-chhHHHHHHHHhhh---cCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--CCccChHHHHHHHHHHH
Q 020193 25 EEFGKHG-LVDNAVEVFNKCTA---FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWC 98 (329)
Q Consensus 25 ~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 98 (329)
..+.+.| +.....+.|+++.. .+-.|..... ..=.-..++..+...-+.+... ...|+...+...+.+..
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~----THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLL----THPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHh----cCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 3444555 44556677777762 2222222211 1111233445555555555433 23445555666665544
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHH
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 178 (329)
....-..+..++.+..+ +............+...|++++|+..++.+..... -|+..+......+...++.++|.+
T Consensus 286 ~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 286 EALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred ccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHH
Confidence 44333333333333322 12233444455567788999999999999988743 366777778889999999999999
Q ss_pred HHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020193 179 MYYSVCKLGLCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257 (329)
Q Consensus 179 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (329)
.++++.... |+ ....-.+..++.+.|++.+|..++++...... -|+..|..|.++|...|+..++..-..+...
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~-- 436 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYA-- 436 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHH--
Confidence 999998864 44 56677788999999999999999999887654 4889999999999999999999887777653
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 258 HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 258 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..|+++.|...+....+.
T Consensus 437 ----------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 437 ----------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred ----------------hCCCHHHHHHHHHHHHHh
Confidence 457788888888777654
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=0.00012 Score=54.79 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=139.5
Q ss_pred ccCchhHHHHHHHHhhh---cC-CCccHH-HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 29 KHGLVDNAVEVFNKCTA---FN-CQQCVL-LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
...+.++.++++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 45567888888877752 23 445554 45566777788899999999999988763 22333333333345567899
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
++|+++++.+.+.+ |.|..++---+...-..|+.-+|++-+....+.- ..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998886 6667777777777777888889998888888773 448999999999999999999999999998
Q ss_pred HHcCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhCCC
Q 020193 184 CKLGLCADVSTYKILIPAVSKA---GMIDEAFRLLHNLVEDGH 223 (329)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~ 223 (329)
.-..+ .++..+..+...+.-. .+.+.+.++|.+..+...
T Consensus 181 ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 87543 4555555666555443 356778899988887643
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00035 Score=58.71 Aligned_cols=147 Identities=13% Similarity=0.088 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCChhhHHHHHHHHHccCCh
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLH--------NLVEDGHKPFPSLYAPIIKGMFRRGQF 243 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (329)
....+.+++....+..+.-...+.-..+......|+++.|..++. .+.+.+..| .+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 355666666666554433334556666777888999999999998 454444443 5556677778888887
Q ss_pred hHHHHHHHHHHHc--CCCCChhhHHHH----HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHH
Q 020193 244 DDAFCFFSEMKIK--GHPPNRPVYTML----ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 244 ~~a~~~~~~~~~~--~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 317 (329)
+.|..++...... .-.+.......+ ...-.+.|+-++|..+++++.+.. ++|..+...++.+|++.. .+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHH
Confidence 7777777766543 111222333333 333346799999999999999865 578889999999998754 56666
Q ss_pred HHHHH
Q 020193 318 KIELL 322 (329)
Q Consensus 318 ~~~~~ 322 (329)
.+-..
T Consensus 512 ~l~k~ 516 (652)
T KOG2376|consen 512 SLSKK 516 (652)
T ss_pred HHhhc
Confidence 55443
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=4e-05 Score=65.98 Aligned_cols=134 Identities=16% Similarity=0.183 Sum_probs=68.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 020193 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245 (329)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (329)
+.....+|.+|+.+++.+..... -..-|..+...|...|+++.|+++|-+. ..++-.|..|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 33445555666666665554322 2233555556666666666666666431 123445556666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
|.++-.+... .......|-.-..-+-+.|++.+|.+++-.. | .|+ .-+..|-+.|..+...++.+
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 6665544432 2223333433344445566666666555322 2 222 23455666666666666544
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00016 Score=54.27 Aligned_cols=188 Identities=13% Similarity=0.106 Sum_probs=138.2
Q ss_pred cchHHHHHHHHHHHHHc---C-CccChH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 65 VKLFHGAYALIRRMIRK---G-FVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
..+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+.+.- +-+...-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34556666666666532 3 455554 35566677788899999999999987763 333333333333456689999
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
+|.++++.+.+.+. .|..++..-+-..-..|+..+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999998863 36777777677777788888888888888776 44899999999999999999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHHc
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRG---QFDDAFCFFSEMKIK 256 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 256 (329)
-..+ .++..+..+...+...| +.+.+.++|.+..+.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7542 25555666666655444 567788999998876
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=1.2e-05 Score=57.03 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=34.9
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPP--VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
..+...|++++|...|+.+......++ ......+...+...|++++|+..++..... ......+......+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 344444444444444444444331111 112222344444445555555444432222 1122333344444555555
Q ss_pred HHHHHHHHH
Q 020193 173 VEFCVEMYY 181 (329)
Q Consensus 173 ~~~a~~~~~ 181 (329)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555444
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=9.1e-06 Score=66.58 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (329)
....|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-.+.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666666788888888888888764 43 34557777777788888888888887653 445566666677788
Q ss_pred hcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
+.++++.|+.+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888887432 55688888888888889888888887765
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=4e-05 Score=66.71 Aligned_cols=261 Identities=18% Similarity=0.144 Sum_probs=170.6
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhc-C-------C-CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-N-------C-QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (329)
-+...|..+.+.|.+..+++-|.-.+-.|... | . .|+ ..-....-.....|.+++|..+|++-++
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR----- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR----- 828 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence 35678999999999998888887776666421 1 0 111 2222333445677899999999988765
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH----------HcC---
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI----------KQG--- 152 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~--- 152 (329)
|..|=..|...|.|++|.++-+.--+..+ ..||......+...++.+.|++.|++.. ...
T Consensus 829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~ 901 (1416)
T KOG3617|consen 829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ 901 (1416)
T ss_pred ----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence 34455667788999999988765433222 3466667777777888888888876532 111
Q ss_pred ------CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 020193 153 ------FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF 226 (329)
Q Consensus 153 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 226 (329)
-..|...|......+-..|+.+.|+.+|..... |-.+++..|-.|+.++|.++-++ .| |
T Consensus 902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg---d 966 (1416)
T KOG3617|consen 902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG---D 966 (1416)
T ss_pred HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---cc---c
Confidence 112445566666666678888888888876543 55677777888999999887664 22 5
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh---------------ccCCHHHHHHHHHHHHhC
Q 020193 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG---------------RGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~ 291 (329)
......+...|...|++.+|..+|.+... |...|+.|- ...+.-.|-++|++.
T Consensus 967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--- 1034 (1416)
T KOG3617|consen 967 KAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--- 1034 (1416)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---
Confidence 56666789999999999999999988653 223333322 222333344444432
Q ss_pred CCCCChhhHHHHHHHHHhCCchhHHHHHH
Q 020193 292 GLTPISRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 292 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
|. .+..-+..|.++|.+.+|.++.
T Consensus 1035 g~-----~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1035 GG-----YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred ch-----hhhHHHHHHHhhcchHHHHHHH
Confidence 21 1233445688888888887763
No 136
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.46 E-value=1.2e-05 Score=66.16 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=70.5
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--GFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
+.+......+++.+....+.+.+..++-+.... ....-+.|..++++.|.+.|..+.++.+++.=...|+.||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334555555666666656666666666655443 122223445566666666666666666666666666666666666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (329)
.++..+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544555555544444443
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.6e-05 Score=65.12 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=71.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
.+++.+...++++.|.++++++.+.. |+ ....+++.+...++..+|.+++++..+..+ -+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 34445555566666666666666652 22 333455555556666666666666654432 34445555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
+++.|..+.+++.+..+. +..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666654221 34466666666666666666666665554
No 138
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.44 E-value=5.8e-06 Score=68.05 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc--CCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT 89 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (329)
+.+.++.....+++.+....+++.+..++-+.... ....-..+.+++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44566666667777776666777777766666543 1112233445777777777777777777777667777777777
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
++.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766655555555555555555444
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=5e-07 Score=46.47 Aligned_cols=33 Identities=36% Similarity=0.496 Sum_probs=19.2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 296 (329)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=3e-05 Score=54.95 Aligned_cols=116 Identities=17% Similarity=0.124 Sum_probs=50.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHhccCCHHH
Q 020193 205 AGMIDEAFRLLHNLVEDGHKP--FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR--PVYTMLITMCGRGGRFVE 280 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 280 (329)
.++...+...++.+....... .......+...+...|++++|...|+.+......|+. ...-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 444455555555544432110 0112222334445555555555555555544311111 122223444455555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 281 AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 281 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
|+..++..... ......+....+++.+.|++++|+..|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442211 12233444455555555555555555543
No 141
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.42 E-value=0.00095 Score=58.92 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=51.1
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHH--HHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLF--ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (329)
..+++..|..-...+.+.. ||.. |...+. .+.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4455555555555554432 2211 111222 223455555555555544433322 445555555555555555555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (329)
..+|++..+.. |+......+..+|.+.+.+.+-.+
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555432 444444444555555555444333
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.41 E-value=5.4e-07 Score=46.33 Aligned_cols=33 Identities=33% Similarity=0.672 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD 86 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (329)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
No 143
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00046 Score=57.31 Aligned_cols=222 Identities=15% Similarity=0.097 Sum_probs=113.4
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH----
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN---- 95 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---- 95 (329)
...+.+...+..+++.|++-+....... .++.-++....+|...|.+..+........+.|-. ...-|+.+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3455566666667777777777666654 45555666666677777766666666555554422 1222222222
Q ss_pred ---HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 96 ---AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 96 ---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
++.+.++++.++..|.+.......| ....+....+++....+...-.+... ..-...-.+.+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~---------~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTP---------DLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCH---------HHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3334445555666665544332111 11222223333333333332222111 1111222444556666
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 020193 173 VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
+..|...|.+++...+ .|...|..-.-+|.+.|.+..|+.=.+...+.+. +....|..=..++....++++|.+.|.+
T Consensus 374 y~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666552 4566666666666666666666666555555421 1233333334444444556666666666
Q ss_pred HHHc
Q 020193 253 MKIK 256 (329)
Q Consensus 253 ~~~~ 256 (329)
.++.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 6654
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=6.7e-07 Score=45.63 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=21.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 020193 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 295 (329)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.37 E-value=7.7e-07 Score=45.40 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCc
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (329)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=3.6e-05 Score=52.42 Aligned_cols=97 Identities=13% Similarity=-0.030 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cChHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PDKRTYAIL 93 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 93 (329)
++..+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..++.+.|+++.|.+.|+.+...... .....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34444555555555555555555554432 111 234444555555555555555555555443211 112334444
Q ss_pred HHHHHhcCchhHHHHHHHHHHhC
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
..++...|+.++|.+.++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 44555555555555555555444
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.32 E-value=2e-05 Score=51.06 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCC-CccHHHHHHHHHHHHhcc--------hHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNC-QQCVLLYNSLLFALCEVK--------LFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555555444321 1223444444444444555555555444
Q ss_pred HHH
Q 020193 95 NAW 97 (329)
Q Consensus 95 ~~~ 97 (329)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.30 E-value=1.7e-05 Score=51.43 Aligned_cols=80 Identities=14% Similarity=0.232 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCC-ccChHHHHHHHHHHHhcC--------chhHHHHHHHHHHhCCCCCCcccH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDKRTYAILVNAWCSSG--------KMREAQEFLQEMSDKGFNPPVRGR 125 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 125 (329)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677889999999999999988 889999999888776543 234566677777777777877788
Q ss_pred HHHHHHHHh
Q 020193 126 DLLVQGLLN 134 (329)
Q Consensus 126 ~~l~~~~~~ 134 (329)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777776654
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.29 E-value=5e-05 Score=53.09 Aligned_cols=99 Identities=13% Similarity=-0.003 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+......+...+...|++++|.++|+.+...++. +..-|-.|.-++...|++++|+..|......+ +-++..+-.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445555666677788888888888877766433 56667777777888888888888888887766 456777777788
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 020193 131 GLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~ 151 (329)
++...|+.+.|.+.|+..+..
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877665
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=3e-05 Score=50.15 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
+..+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++....... .+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 3445555566666666666666665544 34445566666666666666666666666655432 233455555566666
Q ss_pred cCchhHHHHHHHHHHh
Q 020193 100 SGKMREAQEFLQEMSD 115 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~ 115 (329)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 151
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0019 Score=54.01 Aligned_cols=208 Identities=11% Similarity=0.040 Sum_probs=123.6
Q ss_pred hHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHc-CCccChHHHHHHHHHHHhcCchhHHHHH
Q 020193 34 DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK---LFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
+++..+++.....-...+..+|..+...--..- ..+.....+++++.. .+.|+ .+|..+++...+..-...|..+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence 445555555443322233334443333221111 255566666666644 23433 3677777777777778888888
Q ss_pred HHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 110 LQEMSDKGFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 110 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
|.+..+.+..+ .+...+++|..+| .++..-|.++|+--...- .-++.--...+..+...++-..+..+|++....+.
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88887776555 5666677776665 456677888887544441 11334445666677777888888888888877755
Q ss_pred CCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHccCChh
Q 020193 189 CAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDG---HKPFPSLYAPIIKGMFRRGQFD 244 (329)
Q Consensus 189 ~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 244 (329)
.++ ...|..++..-+.-|+...+.++-+++...= ..+....-..+++-|.-.+.+.
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 444 4678888888888888888877777765431 2222233344555555555443
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.00087 Score=51.84 Aligned_cols=183 Identities=9% Similarity=-0.049 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH---HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT---YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
...+-.....+...|++++|.+.|+.+....+.+ ... .-.+..++.+.+++++|...+++..+........-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3334345556667888889999888888763322 222 235667788888899998888888776411112233333
Q ss_pred HHHHHh--cC---------------C---hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 129 VQGLLN--AG---------------Y---LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 129 ~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
+.+.+. .+ + ...|++.|+++.+. -|+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH--
Confidence 333321 11 1 23455666666655 2332 1123333333332221
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVED--GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
.-.. --.+...|.+.|.+..|..=++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 174 -la~~-e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKY-ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0001 114456677777777777777777765 333345566677777888888887777665543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=0.00011 Score=50.00 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCCcccHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLV 129 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 129 (329)
++..+...+.+.|++++|.+.|..+...... .....+..+..++.+.|+++.|...++.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666544211 0123444555666666666666666666654320 11123445555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5566666666666666666555
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.18 E-value=7.4e-05 Score=59.20 Aligned_cols=143 Identities=10% Similarity=0.150 Sum_probs=93.1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK-AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236 (329)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (329)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|......-.. .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4677778888888888888888888875432 334445444444223 56666688888887765 34466777788888
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 237 MFRRGQFDDAFCFFSEMKIKGHPPNR---PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305 (329)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 305 (329)
+...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+. -|+...+..+.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 88888888888888888765 33322 47777777777788888888888887764 344444444444
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.16 E-value=0.0045 Score=54.92 Aligned_cols=209 Identities=15% Similarity=0.130 Sum_probs=143.2
Q ss_pred hhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChH
Q 020193 9 KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88 (329)
Q Consensus 9 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (329)
++++-.+...++.++. +.+.|..++|..+++.....+ +.|..+...+-.+|.+.++.++|..+|++.... .|+..
T Consensus 37 kk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~ee 111 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEE 111 (932)
T ss_pred HHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHH
Confidence 3333333333344433 458899999998888887666 458889999999999999999999999998876 56777
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------hHHHHHHHHHHHHcC-CccCH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY----------LESAKQMVNKMIKQG-FVLDL 157 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~-~~~~~ 157 (329)
....+..+|.+.+++.+-.+.--++.+. .+-++..+-++++.....-. ..-|.+.++.+.+.+ ..-+.
T Consensus 112 ll~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~ 190 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESE 190 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchH
Confidence 8888889999998887765555455442 34556666667766655321 234555666666554 22223
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHH-HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 020193 158 ETFNSLIETICKSGEVEFCVEMYY-SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223 (329)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (329)
.-.......+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...+.
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 333333445567888999999984 344433334455556677888889999999999999988764
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=6.9e-05 Score=48.42 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN 134 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 134 (329)
+..+...+...|++++|...+++..+... .+...+..+..++...+++++|.+.++...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 34455555666666666666666655422 133455555666666666666666666665543 2333455555556666
Q ss_pred cCChHHHHHHHHHHHH
Q 020193 135 AGYLESAKQMVNKMIK 150 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~ 150 (329)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.15 E-value=9.8e-05 Score=58.51 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=78.1
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh-cchHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
+|-.+++...+.+..+.|..+|.+..+.+ ..+..+|-.....-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 56667777777777777777777776543 3334444444443222 45556677777777665 344666677777777
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPP---VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
...++.+.|..+|+..... ++++ ...|...++.-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654 2222 236666666666777777777776666654
No 158
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.15 E-value=0.00045 Score=61.65 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=132.0
Q ss_pred hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHH
Q 020193 33 VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQE 112 (329)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 112 (329)
...|...|-+..+.+ +.-...|..|...|....+...|.+.|+...+.+.. +..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555554 344677888999999888999999999998876533 677888899999999999999998433
Q ss_pred HHhCC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 020193 113 MSDKG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD 191 (329)
Q Consensus 113 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 191 (329)
.-+.. ...-...|....-.|.+.++...|..-|+......+. |...|..+.++|...|++..|.++|.+..... |+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 32221 0011223333555677888999999999988877654 88899999999999999999999999887743 33
Q ss_pred hhhHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 020193 192 VSTYKIL--IPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 192 ~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
.+|... ...-+..|.+.++...+..+..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 233322 2234567889999888877653
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=1.8e-05 Score=50.12 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=47.5
Q ss_pred cCchhHHHHHHHHhhhcCCC-ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQ-QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. ...+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777665421 2444555567777777777777777766 222111 22333445667777777777777
Q ss_pred HHHH
Q 020193 109 FLQE 112 (329)
Q Consensus 109 ~~~~ 112 (329)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.15 E-value=0.00012 Score=60.13 Aligned_cols=102 Identities=16% Similarity=0.056 Sum_probs=84.2
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
-...+...|++++|++.|+++.+.+ +.+...|..+..++...|++++|+..++++..... .+...|..+..++...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999887 77888999999999999999999999999988753 366788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
+++|...|+...... |+.......
T Consensus 86 ~~eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 999999999998864 444433333
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=6.7e-06 Score=52.11 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHHcCCc-cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (329)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666655331 2333444466666666666666666666 2221 1122333344566666666666666
Q ss_pred HHHH
Q 020193 144 MVNK 147 (329)
Q Consensus 144 ~~~~ 147 (329)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.13 E-value=0.00013 Score=51.10 Aligned_cols=95 Identities=7% Similarity=-0.080 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
.-.+...+...|++++|.++|+.+.... +-+..-|-.|.-++-..|++++|+..|......++. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 3344445556666666666666665543 234444555566666666666666666666655533 55566666666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 020193 170 SGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 170 ~~~~~~a~~~~~~~~~~ 186 (329)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.10 E-value=0.0004 Score=50.80 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566677777777888888888877775432222 3466777777777788888888777776653 23445555666
Q ss_pred HHHHhcCChHH
Q 020193 130 QGLLNAGYLES 140 (329)
Q Consensus 130 ~~~~~~~~~~~ 140 (329)
.++...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 66666665443
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.09 E-value=0.0018 Score=50.08 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=30.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccH---HHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGR---DLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
....+...|++++|.+.|+.+.... +-+...- -.+..++.+.++++.|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334445566666666666665542 1111111 23445556666666666666666555
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.08 E-value=6.2e-06 Score=40.89 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=15.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.07 E-value=0.00076 Score=58.12 Aligned_cols=136 Identities=15% Similarity=0.071 Sum_probs=77.2
Q ss_pred CccHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhc--------CchhHHHHHHHHHHh
Q 020193 49 QQCVLLYNSLLFALCEV-----KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS--------GKMREAQEFLQEMSD 115 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 115 (329)
+.|...|...+++.... ++.+.|..+|++..+..+. ....|..+..++... .++..+.+..+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 55666666666654332 2355667777766665321 223333332222211 112333444443333
Q ss_pred CC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 020193 116 KG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 116 ~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (329)
.. .+.++..+..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 23344556666555566778888888888777764 466677777777778888888888887776644
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.05 E-value=0.0002 Score=52.20 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP--FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 270 (329)
..+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344445555555566666666666655432221 12345555566666666666666666655431 222333444444
Q ss_pred HHh-------ccCCHHHHHHHHHH
Q 020193 271 MCG-------RGGRFVEAANYLVE 287 (329)
Q Consensus 271 ~~~-------~~~~~~~a~~~~~~ 287 (329)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 56666655544443
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.05 E-value=0.0034 Score=50.04 Aligned_cols=92 Identities=18% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHhc-CChHHHHHHHHHHHHc----CCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----Cchh-hHHH
Q 020193 130 QGLLNA-GYLESAKQMVNKMIKQ----GFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-----ADVS-TYKI 197 (329)
Q Consensus 130 ~~~~~~-~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~ 197 (329)
..|... |+++.|.+.|++..+. +... -..++..+...+.+.|++++|.++|+++...... .+.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 6677777776665442 2100 1234455566667777777777777776543221 1111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
.+-++...|++-.|...+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333455566777777777766543
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.00022 Score=52.01 Aligned_cols=81 Identities=10% Similarity=-0.019 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc--ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|+..++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666666667777777777777776543222 12356666677777777777777777766542 22333444444
Q ss_pred HHHH
Q 020193 130 QGLL 133 (329)
Q Consensus 130 ~~~~ 133 (329)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.0003 Score=55.99 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMS 114 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (329)
.|......|...+++++|...|.+..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 46666677777777777777776663
No 171
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.02 E-value=9.8e-06 Score=40.17 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.01 E-value=0.00029 Score=57.98 Aligned_cols=92 Identities=14% Similarity=-0.032 Sum_probs=79.8
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (329)
...+...|++++|++.|++.++.... +...|..+..++...|++++|+..++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45667889999999999999987543 67788889999999999999999999998875 45677888899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 020193 139 ESAKQMVNKMIKQG 152 (329)
Q Consensus 139 ~~a~~~~~~~~~~~ 152 (329)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999874
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=3.2e-05 Score=46.67 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=37.0
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.+.|++++|.+.|+.+.... |.+...+..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677777777777777665 556777777777777777777777777777665
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=0.00011 Score=44.53 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALIRRMIR 80 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 80 (329)
++..|..+...+...|++++|+..|++..+.+ |.+...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666666667777777777777766665 556666666666666666 56666666666554
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=0.001 Score=48.68 Aligned_cols=83 Identities=20% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 020193 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237 (329)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (329)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.... +...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34444444444555555555554443322111 234444455555555555555555554443211 233334444444
Q ss_pred HccCCh
Q 020193 238 FRRGQF 243 (329)
Q Consensus 238 ~~~~~~ 243 (329)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=0.0001 Score=44.00 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=40.8
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+...+.+.|++++|.+.|+.+.+.. |-+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777766 556777777777777777777777777777654
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.90 E-value=0.00042 Score=51.02 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHcc-----CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKH-----GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC 63 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 63 (329)
-+-.+|..+++.|.+. |..+-....+..|.+.|+..|..+|+.|++.+=
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFP 98 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFP 98 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCC
Confidence 3555566666666533 455555566666666666666666666666543
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.89 E-value=0.0003 Score=56.63 Aligned_cols=132 Identities=14% Similarity=0.036 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CC-CCChh
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLV----EDGHK-PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----GH-PPNRP 263 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 263 (329)
.|..|...|.-.|+++.|....+.-. +-|-+ .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555556677887776654322 11211 12345667778888888888888887765432 21 22344
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHh----CC-CCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTE----MG-LTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
+.-+|...|.-..++++|+.++.+-.. .+ ..-..+.+.+|..+|...|..++|..+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 556677777777788888887766431 11 122466788888889888999998888776544
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.88 E-value=0.0016 Score=56.11 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..|..+.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++....++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444444444444455555555555555433 344455555555555555555555555554444
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.85 E-value=0.0063 Score=45.84 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+..+-.....+...|++.+|.+.|+.+.... -+-.....-.++.++.+.|+++.|...+++..+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444445556667888888888888887643 1222445556777788888888888888887765
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=0.00011 Score=44.45 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=41.2
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-chhHHHHHHHHHhhhcc
Q 020193 261 NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG-KHDLAEKIELLEVSLRS 328 (329)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 328 (329)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..++.+.| ++++|.+.++...+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34456666666666666666666666666543 224556666666666666 56666666666665543
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.83 E-value=0.00089 Score=49.38 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCccc
Q 020193 50 QCVLLYNSLLFALCEV-----KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (329)
.+-.+|..+++.+.+. |..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 4455566666555532 4455555555566666666666666666655543 2111 00111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
-..| -.+.+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0000 12345677788888888888888888888887777655
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.009 Score=48.45 Aligned_cols=280 Identities=15% Similarity=0.082 Sum_probs=156.6
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.....+.+..++..|+..+...++.. |.+...|..-+..+...++++++.--.+.-.+.... ........-+++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34445566677788888888888776 556666766666777777777776655444432100 1112222333333333
Q ss_pred chhHHHHHHH---------------HHHhCCC-CCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHH
Q 020193 102 KMREAQEFLQ---------------EMSDKGF-NPPVRGRDLL-VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 102 ~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 164 (329)
+..+|.+.++ ....... +|.-.++..+ ..++.-.|+.++|.+.--...+.... +......--
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg 210 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRG 210 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcc
Confidence 3333333322 1111111 1222223222 24556678888888777666655321 222222222
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhhHHH-------------HHHHHHhcCCHHHHHHHHHHHHhC---CCCCChh
Q 020193 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI-------------LIPAVSKAGMIDEAFRLLHNLVED---GHKPFPS 228 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 228 (329)
.++...++.+.+...|.+....+ |+...-.. =..-..+.|.+..|.+.|.+.+.. +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 33445677888888888877654 33221111 122234678888999998887754 3455666
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHH---HHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHH
Q 020193 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML---ITMCGRGGRFVEAANYLVEMTEMGLTP-ISRCFDLVT 304 (329)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~ 304 (329)
.|........+.|+..+|+.--++..+. |..-...+ ..++...++|++|.+-++...+....+ ...++....
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~ 364 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQ 364 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 6777777788888988888887777764 33322222 234556788888888888776543332 234555544
Q ss_pred HHHHhC
Q 020193 305 DGLKNC 310 (329)
Q Consensus 305 ~~~~~~ 310 (329)
.++.++
T Consensus 365 ~aLkkS 370 (486)
T KOG0550|consen 365 LALKKS 370 (486)
T ss_pred HHHHHh
Confidence 444433
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.78 E-value=0.003 Score=42.67 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=27.2
Q ss_pred HHHHhcchHHHHHHHHHHHHHcCCccC--hHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 60 FALCEVKLFHGAYALIRRMIRKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555443322 12333444455555555555555555543
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0083 Score=45.69 Aligned_cols=131 Identities=10% Similarity=0.061 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH-----
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV----- 129 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----- 129 (329)
-+.++.++...|.+.-...++.+..+...+.++.....|.+...+.||.+.|...|+...+..-..+..+++.+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345555555566666666666666665555556666666666666666666666666654443333444443332
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (329)
..|.-.+++..|...+.++...+.. ++...|.-.-+..-.|+..+|.+..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2233445566666666665555332 4444444444444456666666666666554
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.75 E-value=0.0072 Score=43.47 Aligned_cols=128 Identities=15% Similarity=0.085 Sum_probs=72.7
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHhHHH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNS 162 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 162 (329)
.|+...-..|..+....|+..+|...|++....-+.-|....-.+.++....+++..|..+++.+-+.... .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555555666666677777777777766665445555666666666666667777777776666654210 12233445
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 020193 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (329)
+.+.+...|.+.+|..-|+.....- |+...-..-...+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 5566666677776776666665532 333332233333445555444433
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.72 E-value=0.014 Score=47.57 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcC---CccChHHHHHHHHHHHh---cCchhHHHHHHHHHHhCCCCCCcccHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKG---FVPDKRTYAILVNAWCS---SGKMREAQEFLQEMSDKGFNPPVRGRDL 127 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 127 (329)
+...++-+|....+++...++++.+.... +.-....-....-++.+ .|+.++|++++..+....-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344445555556666666665555431 11111112223333334 5555666666555433333455555555
Q ss_pred HHHHHHh---------cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC----HHHHHHHH---HH-HHHcC---
Q 020193 128 LVQGLLN---------AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE----VEFCVEMY---YS-VCKLG--- 187 (329)
Q Consensus 128 l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~--- 187 (329)
+.+.|-. ....++|...|.+.-+.. |+...--.++..+...|. -.+..++- .. +.+.|
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 5544421 112455666665554432 232221111111111221 11122222 11 11222
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
...+--.+..++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234445566777777777777777777777765
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.72 E-value=0.0002 Score=43.14 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=29.8
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
+.|++++|.++|+++....+. +...+..+..++.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666555322 4555555666666666666666666666554
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0024 Score=49.59 Aligned_cols=128 Identities=15% Similarity=0.071 Sum_probs=90.2
Q ss_pred hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC---chhHHHHH
Q 020193 33 VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG---KMREAQEF 109 (329)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 109 (329)
.+....-++.-...+ |.|...|-.|...|...|+++.|...|.+..+.. .++...+..+..++..+. +-.++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334444444444555 7788899999999999999999999998888763 335566666666554433 45678888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHH
Q 020193 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165 (329)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 165 (329)
++++.... +-++.+...|...+...|++.+|...|+.|.+.. |....+..+++
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 88888775 4566777777888888999999999999988874 33334444444
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0043 Score=48.20 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=87.5
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCccCHHhH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG---YLESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
+-|...|-.|..+|...|+.+.|..-|....+.. ++++..+..+..++.... ...++.++|+++...... +..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 3488999999999999999999999999998874 567777877777766543 357889999999988654 77888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
..|...+...|++.+|...|+.|.+...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 8888999999999999999999998754
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.70 E-value=0.012 Score=44.39 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhCCchhHHHH
Q 020193 268 LITMCGRGGRFVEAANYLVEMTEMGLTPI----SRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
+.+-|.+.|.+..|..-++.+++.= |+ ......++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 4556777777777777777777532 22 3355667777777777775443
No 192
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.00097 Score=51.48 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=67.3
Q ss_pred HHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 020193 61 ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
-+.+.+++++|+..|.+.+..... |.+.|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 445667777777777777765433 66666777777777777777777776666654 3335567777777777777777
Q ss_pred HHHHHHHHHHcCCccCHHhHHHHHH
Q 020193 141 AKQMVNKMIKQGFVLDLETFNSLIE 165 (329)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~l~~ 165 (329)
|.+.|++..+. .|+-.+|..=+.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHH
Confidence 77777777665 455555544443
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.67 E-value=0.00092 Score=47.42 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHH-----hCCCCCCcccH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS-----DKGFNPPVRGR 125 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 125 (329)
..+...++..+...|++++|..+++.+.... +.|...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4566677778888888888888888888775 3377788888888888888888888888773 34777776554
No 194
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.66 E-value=0.02 Score=46.14 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (329)
.+.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-.++... +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 45556667777788888887776654 2 36888888899999999999887776432 12457788899999
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
.+.|+..+|..+..++ .+..-+..|.++|++.+|.+..-.
T Consensus 248 ~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998888888662 224556777888888888776443
No 195
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0012 Score=51.00 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=41.1
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (329)
.+.+++.+|+..|.+.+... +.|..-|..-..+|.+.|.++.|.+-.+..+..+.. -..+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 34445555555555555442 333444444455555555555555555444443211 2334555555555555555555
Q ss_pred HHHHHHHH
Q 020193 178 EMYYSVCK 185 (329)
Q Consensus 178 ~~~~~~~~ 185 (329)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55554444
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0052 Score=41.52 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 202 VSKAGMIDEAFRLLHNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
+-..|+.++|..+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555444443322 12233344444455555555555554443
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00035 Score=41.60 Aligned_cols=56 Identities=23% Similarity=0.463 Sum_probs=30.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
...+...|++++|...|+.+.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666665543 22445555555566666666666666665554
No 198
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.015 Score=47.23 Aligned_cols=261 Identities=14% Similarity=0.034 Sum_probs=156.7
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 020193 58 LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY 137 (329)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 137 (329)
....+.+..++..|+..+....+..+. +...|..=+..+...++++++.--.+.-.+.. +-......-.-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 334566778888999999888887543 45556656666667777777766555443321 0111122222233333333
Q ss_pred hHHHHHHHH---------------HHHHcCC-ccCHHhHHHH-HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 020193 138 LESAKQMVN---------------KMIKQGF-VLDLETFNSL-IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200 (329)
Q Consensus 138 ~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
..+|...++ ....... +|.-.++..+ ..++...|+.++|.++--.+.+... ...+...++
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vr 209 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVR 209 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhc
Confidence 333332222 2222211 1222333333 3456678899999888777766432 222333332
Q ss_pred --HHHhcCCHHHHHHHHHHHHhCCCCCChhhH-------------HHHHHHHHccCChhHHHHHHHHHHHc---CCCCCh
Q 020193 201 --AVSKAGMIDEAFRLLHNLVEDGHKPFPSLY-------------APIIKGMFRRGQFDDAFCFFSEMKIK---GHPPNR 262 (329)
Q Consensus 201 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 262 (329)
++-..++.+.+...|++.+..+ |+...- ..=..-..+.|++..|.+.+.+.+.. +..|+.
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 3345678888999998877653 332211 11122356789999999999998865 446667
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..|.....+..+.|+.++|+.-.++..+. .|. ...+..-..++.-.++|++|.+-++...+..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77877778888999999999999887643 222 2334444456667789999998887776654
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.59 E-value=0.013 Score=50.38 Aligned_cols=259 Identities=14% Similarity=0.157 Sum_probs=136.9
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHH---------HHhhhcCCCccHHHHHHHHHHHHhcch--HHHHHHHHHHHHHc
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVF---------NKCTAFNCQQCVLLYNSLLFALCEVKL--FHGAYALIRRMIRK 81 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 81 (329)
+.+.+..+.+-+..|...|.+++|.++- +.+... ..+.--++..=.+|.+.++ +-+...-+++++++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r 629 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKR 629 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 4555666777777888888888886542 111110 0112223334445555443 33444455667777
Q ss_pred CCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCccC
Q 020193 82 GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD-----LLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156 (329)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (329)
|-.|+.. .+...++-.|++.+|-++|.+--..+- -...|+ -..+-+...|..++-..+.++-.+- ..+
T Consensus 630 ge~P~~i---LlA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~ 702 (1081)
T KOG1538|consen 630 GETPNDL---LLADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARN 702 (1081)
T ss_pred CCCchHH---HHHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhh
Confidence 8777764 345567777888888888765422110 001111 1122333444443333333322111 001
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHH------HHHcCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 020193 157 LETFNSLIETICKSGEVEFCVEMYYS------VCKLGLC---ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP 227 (329)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 227 (329)
..--.+..+.+...|+.++|..+.-+ +.+.+-+ .+..+...+...+-+...+..|.++|..|-..
T Consensus 703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 11112334555566777776654321 1111111 23344455555555666777788888776432
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChh-----------hHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP-----------VYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..+++.....+++++|..+-+...+. .||.. -|...-++|.+.|+-.+|.++++++...
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 34667778889999998887776553 33322 2333445677778888888888777543
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0061 Score=43.20 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=49.1
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCChhhHH
Q 020193 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-----EMGLTPISRCFD 301 (329)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~ 301 (329)
+...++..+...|++++|..+.+.+.... |.|...|..++.+|...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778888888888888888763 4477788888888888888888888887765 468888766543
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.031 Score=45.26 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=169.6
Q ss_pred HHHHHHHHH--ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHH--HhcchHHHHHHHHHHHHHcCCccChHHH----H
Q 020193 20 LSLIIEEFG--KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFAL--CEVKLFHGAYALIRRMIRKGFVPDKRTY----A 91 (329)
Q Consensus 20 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~ 91 (329)
|..|-..+. -.|+-..|.++-.+..+. +..|....-.++.+- .-.|+++.|.+-|+.|.. |+.|- .
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence 445544444 357778888777665432 234444454555443 346999999999999986 33333 2
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-CccCHHh--HHHHHHHHH
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLET--FNSLIETIC 168 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~ 168 (329)
.|.-...+.|+.+.|.++-+..-..- +.-...+...+...+..|+|+.|+++++.-.+.. +.++..- -..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334457788898988888876553 3346778889999999999999999998766542 2333321 122222211
Q ss_pred ---ccCCHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 020193 169 ---KSGEVEFCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244 (329)
Q Consensus 169 ---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (329)
-..+...|...-.+..+ ..|+.. .-..-..++.+.|+..++-.+++.+-+....| ..+. +..+.+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCC--
Confidence 12345555555444433 345533 22334567788888888888888888764443 3222 222344444
Q ss_pred HHHHHHHHHHHc-CCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC-CchhHHHHHHH
Q 020193 245 DAFCFFSEMKIK-GHPP-NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC-GKHDLAEKIEL 321 (329)
Q Consensus 245 ~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~ 321 (329)
.+..-+++.... .++| |....-.+..+-...|++..|..--+.... ..|....|..|.+.-... |+-.++....-
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 343333333322 1233 445555666777777888777766555543 457777777777765544 77777666544
Q ss_pred H
Q 020193 322 L 322 (329)
Q Consensus 322 ~ 322 (329)
.
T Consensus 388 q 388 (531)
T COG3898 388 Q 388 (531)
T ss_pred H
Confidence 3
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0042 Score=48.56 Aligned_cols=97 Identities=13% Similarity=0.080 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--hHHHHHHHHHHHhcCchhHHHHHHHHHHhCC--CCCCcccHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSDKG--FNPPVRGRDLLVQ 130 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~ 130 (329)
|...+....+.|++++|...|+.+.+..+... ...+..+..++...|++++|...|+.+.+.- .+.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44434333445666666666666665421110 2345555566666666666666666665431 1112233333445
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 020193 131 GLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.+...|+.++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666655
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.0024 Score=51.72 Aligned_cols=264 Identities=14% Similarity=0.049 Sum_probs=159.9
Q ss_pred HHHHccCchhHHHHHHHHhhhcCCCcc----HHHHHHHHHHHHhcchHHHHHHHHHH--HHHc--CC-ccChHHHHHHHH
Q 020193 25 EEFGKHGLVDNAVEVFNKCTAFNCQQC----VLLYNSLLFALCEVKLFHGAYALIRR--MIRK--GF-VPDKRTYAILVN 95 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~--~~-~~~~~~~~~l~~ 95 (329)
.-+++.|+....+.+|+...+.| ..| ..+|..|..+|.-.+++++|+++-.. .+.+ |- .-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45789999999999999999887 444 34577777888888999999886432 1111 10 011223344555
Q ss_pred HHHhcCchhHHHHHHHHH----HhCCC-CCCcccHHHHHHHHHhcCC--------------------hHHHHHHHHHHHH
Q 020193 96 AWCSSGKMREAQEFLQEM----SDKGF-NPPVRGRDLLVQGLLNAGY--------------------LESAKQMVNKMIK 150 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~ 150 (329)
.+--.|.+++|...-.+- .+.|- ......+..+.+.|...|+ ++.|.+.|.+-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 566667777766543222 22220 1122344455666655442 2334444432211
Q ss_pred ----cCC-ccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCC-CchhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 020193 151 ----QGF-VLDLETFNSLIETICKSGEVEFCVEMYYSVCK----LGLC-ADVSTYKILIPAVSKAGMIDEAFRLLHNLV- 219 (329)
Q Consensus 151 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~- 219 (329)
.|- ...-..|..|.+.|.-.|+++.|+...+.-.. -|-. ..-..+..+..++.-.|+++.|.+.|+...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 110 01123456666667778899999877665322 1211 123467778888888899999999887743
Q ss_pred ---hCCC-CCChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 220 ---EDGH-KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 220 ---~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
+.|- .....+..+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+...
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2221 123345556778888888889998877654321 122345688899999999999999988776654
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.001 Score=40.69 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 25 EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
..+.+.+++++|.++++.+...+ |.+...|.....++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45667777777777777777776 6677777777777777777777777777777653
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.47 E-value=0.0042 Score=42.41 Aligned_cols=102 Identities=11% Similarity=0.094 Sum_probs=66.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 020193 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270 (329)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 270 (329)
|..++..++.++++.|+.+....+++..- |+.++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34567777777777888777777776543 22221110 0000 1122346788888888888
Q ss_pred HHhccCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhCCc
Q 020193 271 MCGRGGRFVEAANYLVEMT-EMGLTPISRCFDLVTDGLKNCGK 312 (329)
Q Consensus 271 ~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~ 312 (329)
+|+..|++..|+++++... ..+++.+..+|..|++-....-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 8888888888888888876 46677778888888876554443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.47 E-value=0.0056 Score=47.87 Aligned_cols=88 Identities=10% Similarity=-0.012 Sum_probs=36.5
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCh
Q 020193 168 CKSGEVEFCVEMYYSVCKLGLCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQF 243 (329)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 243 (329)
.+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.-. ......+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334455555555555544322111 12334444444445555555555554443211 11122233333344444444
Q ss_pred hHHHHHHHHHHH
Q 020193 244 DDAFCFFSEMKI 255 (329)
Q Consensus 244 ~~a~~~~~~~~~ 255 (329)
++|..+|+.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.025 Score=40.83 Aligned_cols=135 Identities=13% Similarity=0.119 Sum_probs=97.0
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CchhhHHH
Q 020193 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKI 197 (329)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 197 (329)
.|+...-..|..++.+.|+..+|...|.+....-+.-|......+.++....+++..|...++++.+..+. .++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 47777777888889999999999999998887666667888888888888889999999999888765321 12334456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHH----HHHHHHHH
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAF----CFFSEMKI 255 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~~~~ 255 (329)
+.+.+...|.+.+|+.-|+..... -|+...-......+.+.|+.+++. .+++.+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 677888889999999999888775 344444444445566777666554 44444443
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.092 Score=46.23 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG 273 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 273 (329)
+.+--+.-+...|+..+|.++-.+.. .|+...|..=+.+++..+++++-+++-+..+ ++.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444445555666666666655442 3566677777777777777777666544432 2456777788888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
+.|+.++|.+++.+.. + +.....+|.+.|++.+|.++.-
T Consensus 756 ~~~n~~EA~KYiprv~-----~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG-----G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccC-----C----hHHHHHHHHHhccHHHHHHHHH
Confidence 8888888888775432 1 1156778888888888877643
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.0069 Score=42.86 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=66.1
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (329)
....-+...|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+ .-|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 4445556778888888888877765533 55666777777777888888888887765554 244555556677888888
Q ss_pred ChHHHHHHHHHHHHc
Q 020193 137 YLESAKQMVNKMIKQ 151 (329)
Q Consensus 137 ~~~~a~~~~~~~~~~ 151 (329)
+.+.|...|....+.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 888888888877774
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.29 E-value=0.072 Score=43.67 Aligned_cols=97 Identities=11% Similarity=0.038 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCCCcccHHHHHHHHHh---cCChHHHHHHHHHHHHcCCccCHHhHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLN---AGYLESAKQMVNKMIKQGFVLDLETFNS 162 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (329)
+...++-+|....+++...++++.+.... +..+...-....-++.+ .|+.++|++++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556777788888888888886642 11122222234445556 7788888888887655555667777777
Q ss_pred HHHHHHc---------cCCHHHHHHHHHHHHH
Q 020193 163 LIETICK---------SGEVEFCVEMYYSVCK 185 (329)
Q Consensus 163 l~~~~~~---------~~~~~~a~~~~~~~~~ 185 (329)
+...|-. ....++|+..|.+.-+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 6665532 1124555555555443
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.23 E-value=0.0037 Score=38.13 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=20.4
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
.+.+++++|.++++.+...+ |.++..+.....++.+.|++++|.+.+++..+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444444444443332 22333333334444444444444444444433
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.19 E-value=0.0028 Score=39.31 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (329)
++..+..++...|++++|++.+++.
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.17 E-value=0.03 Score=46.56 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH---HHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+.++..++.+..+|.+.|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788888888888999999999998888775 3333 35888888888899999998888888775
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.15 E-value=0.011 Score=40.34 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=68.6
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235 (329)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (329)
|..++..++.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 467889999999999999999999877643 2222100 0000 1113356788888888888
Q ss_pred HHHccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHh
Q 020193 236 GMFRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCG 273 (329)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 273 (329)
+|+.+|++..|.++.+...+. +++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887654 66667778888777544
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0026 Score=39.43 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhc----CC-Ccc-HHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAF----NC-QQC-VLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
..+|+.+...|...|++++|+..|++..+. |- .|+ ..+++.+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457899999999999999999999988643 20 122 66788999999999999999999988764
No 216
>PRK15331 chaperone protein SicA; Provisional
Probab=97.12 E-value=0.051 Score=38.62 Aligned_cols=85 Identities=13% Similarity=-0.018 Sum_probs=44.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 020193 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAAN 283 (329)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 283 (329)
..|++++|..+|+-+...++. +..-+..|..++-..+++++|...|......+. -|+..+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 455666666666555544332 334444455555555566666665555544332 244444445555556666666666
Q ss_pred HHHHHHh
Q 020193 284 YLVEMTE 290 (329)
Q Consensus 284 ~~~~~~~ 290 (329)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 6555554
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.96 E-value=0.17 Score=42.02 Aligned_cols=69 Identities=12% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (329)
|.|...|-.|+..+...|..++..++++++...- |--..+|..-+.+-...+++..+..+|.+-+....
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 5678899999999999999999999999997643 55567788888877777888888888877766543
No 218
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.14 Score=40.10 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=76.0
Q ss_pred HHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 60 FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
......|++.+|..+|......... +...-..++.++...|+.+.|..++..+...--.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3445566666677766666655322 344555666667777777777777666543321111122223344455555444
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcC
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 206 (329)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+.--|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444332 1145555566666666777777766665554432 1234445555666555555
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.17 Score=41.16 Aligned_cols=256 Identities=16% Similarity=0.147 Sum_probs=117.1
Q ss_pred HHHHHHHHHh--cchHHHHHHHHHHHHHcCCccChHHHHHHHHH--HHhcCchhHHHHHHHHHHhCCCCCCcc--cHHHH
Q 020193 55 YNSLLFALCE--VKLFHGAYALIRRMIRKGFVPDKRTYAILVNA--WCSSGKMREAQEFLQEMSDKGFNPPVR--GRDLL 128 (329)
Q Consensus 55 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 128 (329)
|..|-.+++. .|+-..|.++-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|... |... ....|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444333 34555555544433211 22233333444432 33456777777777776543 1111 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCchh--hHHHHHHHHH--
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVS--TYKILIPAVS-- 203 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~-- 203 (329)
.-.--+.|+.+.|.+.-+.....-.. -...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33334566666666666665554322 34556666666777777777777766554322 223321 1122222111
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 020193 204 -KAGMIDEAFRLLHNLVEDGHKPFPS-LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 204 -~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 281 (329)
-..+...|...-.+..+ ..|+.. .--.-..++.+.|+..++-.+++.+-+.. |.+..+..++ ..+.|+ .+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cH
Confidence 12334445444444333 233321 11223355666777777777777666653 3333222222 223343 23
Q ss_pred HHHHHHHHh-CCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 282 ANYLVEMTE-MGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 282 ~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
..-+++... ..++|| ......+.++-...|++..|..-.+..
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333333221 112333 445555566666666666665444433
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.13 Score=39.53 Aligned_cols=140 Identities=16% Similarity=0.078 Sum_probs=94.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPII---- 234 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 234 (329)
+.+.++.++.-.+.+.-....+.+..+...+-++.....+.+.-.+.|+.+.|...|++..+..-..+..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777788888888888887766777788888888888888888888888776553344444444333
Q ss_pred -HHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 020193 235 -KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301 (329)
Q Consensus 235 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 301 (329)
..|...+++..|...+.++...+- .|+...|.-.-+..-.|+..+|.+.++.|.+.- |...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence 345566778888888887776532 244444554445555778888888888887653 4444433
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.88 E-value=0.17 Score=40.92 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=75.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (329)
+.+.-+.-+...|+...|.++-.+. .+ |+...|-..+.+++..++|++..++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 4444456666778877777775554 23 7888888888888888888877765432 124567888888888
Q ss_pred ccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 239 RRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
..|+..+|..++.+ + .+..-+..|.+.|++.+|.+.-.+
T Consensus 249 ~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877766 1 124456677788888888776544
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.84 E-value=0.089 Score=36.90 Aligned_cols=126 Identities=14% Similarity=0.166 Sum_probs=76.7
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
...++..+.+.+........++.+...+ +.+...++.++..|++.+ ..+..+.+.. . .+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 4566777777788888888888887776 567778888888887654 3333444432 1 123334557777777
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA-GYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
.+-++++..++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 7777777777765522 22233333333 6666666666641 14556666665554
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.82 E-value=0.0039 Score=33.59 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSL 58 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 58 (329)
.++..+...|.+.|++++|.++|+++.+.. |.|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 345566666666666666666666666655 5555555544
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.82 E-value=0.18 Score=43.37 Aligned_cols=176 Identities=18% Similarity=0.076 Sum_probs=106.2
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC-CccCh-----HHHHHHHHHHHh----cCchhHH
Q 020193 37 VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG-FVPDK-----RTYAILVNAWCS----SGKMREA 106 (329)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a 106 (329)
.-+|+-+... +||. ...++....=.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3345555543 2444 4455666666777788887777665432 22111 223444443333 3467788
Q ss_pred HHHHHHHHhCCCCCCcccHHH-HHHHHHhcCChHHHHHHHHHHHHcC---CccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDL-LVQGLLNAGYLESAKQMVNKMIKQG---FVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
.++++.+.+. -|+...|.. -.+.+...|++++|.+.|++..... .+.....+--+.-++.-..+|++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888776 355555543 3466677888899988888655321 111234455556667778889999998888
Q ss_pred HHHcCCCCchhhHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 020193 183 VCKLGLCADVSTYKILIPA-VSKAGMI-------DEAFRLLHNLV 219 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~ 219 (329)
+.+.+- .+..+|.-+..+ +...++. ++|..+|.++.
T Consensus 331 L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 887543 344555544433 3445666 78888888765
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.2 Score=43.62 Aligned_cols=189 Identities=18% Similarity=0.157 Sum_probs=106.9
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHH---------
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALI--------- 75 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------- 75 (329)
+++|+++|-.|+... +...++-.|.+.+|-++|.+--..+ ..+..|...+.++.|.+++
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en---------RAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN---------RALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh---------hHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 567788887777654 3445666778888888876643221 2233333334444443333
Q ss_pred ---HHHHHc--CC-ccChHHHHHHHHHHHhcCchhHHHHHHH------HHHhCCC---CCCcccHHHHHHHHHhcCChHH
Q 020193 76 ---RRMIRK--GF-VPDKRTYAILVNAWCSSGKMREAQEFLQ------EMSDKGF---NPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 76 ---~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
++-.+. ++ +| ......+...|+.++|..+.- .+.+.+- ..+..+...+...+.+...+.-
T Consensus 691 mL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 691 MLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 221110 11 11 123344556666666655421 1122111 1234455555556666777788
Q ss_pred HHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch-----------hhHHHHHHHHHhcCCHH
Q 020193 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV-----------STYKILIPAVSKAGMID 209 (329)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~ 209 (329)
|-++|.+|-+. ..+++.....++|.+|+.+-++..+. .|++ .-|...-.+|.+.|+-.
T Consensus 766 AaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 766 AAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred HHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 88888877543 34566677888999998887775442 2332 12344456778888888
Q ss_pred HHHHHHHHHHhC
Q 020193 210 EAFRLLHNLVED 221 (329)
Q Consensus 210 ~a~~~~~~~~~~ 221 (329)
+|..+++++...
T Consensus 835 EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 835 EAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHhhhh
Confidence 888888887654
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.57 E-value=0.16 Score=42.45 Aligned_cols=66 Identities=12% Similarity=0.055 Sum_probs=57.9
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh----HHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
|.+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999988764 443 35899999999999999999999999875
No 227
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.54 E-value=0.3 Score=38.96 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHccCchhHHHHHHHHhhhcC--CCccH------HHHHHHHHHHHhcc-hHHHHHHHHHHHHHc--------CCccCh--
Q 020193 27 FGKHGLVDNAVEVFNKCTAFN--CQQCV------LLYNSLLFALCEVK-LFHGAYALIRRMIRK--------GFVPDK-- 87 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~-- 87 (329)
..+.|+++.|..++.++.... ..|+. ..||.-. .....+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356788888888888776432 12221 1222222 223334 666666665554432 111111
Q ss_pred ---HHHHHHHHHHHhcCchh---HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 88 ---RTYAILVNAWCSSGKMR---EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 88 ---~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++..++.++...+..+ +|..+++.+.... +-.+..+..-++.+.+.++.+.+.+.+.+|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23344455555544432 3333444443221 122333434444455555555555555555554
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.51 E-value=0.14 Score=34.82 Aligned_cols=136 Identities=17% Similarity=0.208 Sum_probs=69.2
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHH---HHHHHHHHhcCchh
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY---AILVNAWCSSGKMR 104 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 104 (329)
.-.|..++..++..+..... +..-+|.+|--....-+-+-..+.++.. |--.|.... ..++.+++..|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc--
Confidence 44677888888888877643 5666777776666555544444444443 322232211 223333333221
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
+.......+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+.-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 2233444555666666666666666666542 24466666666777777777777777777766
Q ss_pred HcCC
Q 020193 185 KLGL 188 (329)
Q Consensus 185 ~~~~ 188 (329)
+.|.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 6665
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.39 Score=41.44 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=99.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch------hhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhh
Q 020193 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADV------STYKILIPAVSK----AGMIDEAFRLLHNLVEDGHKPFPSL 229 (329)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 229 (329)
+..+++..+-.|+-+.+++.+....+.+-...+ ..|..++..++. ....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345566667788999999988887654221221 234444433332 45678899999998875 356555
Q ss_pred HHHH-HHHHHccCChhHHHHHHHHHHHcC--C-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 230 YAPI-IKGMFRRGQFDDAFCFFSEMKIKG--H-PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305 (329)
Q Consensus 230 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 305 (329)
|... .+.+...|++++|++.|++..... . ......+.-+.-++.-.++|++|...|..+.+..-. +..+|..+.-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 5433 345667899999999999765321 1 122334555666777889999999999999875422 3334433333
Q ss_pred -HHHhCCch-------hHHHHHHHHH
Q 020193 306 -GLKNCGKH-------DLAEKIELLE 323 (329)
Q Consensus 306 -~~~~~g~~-------~~a~~~~~~~ 323 (329)
++...|+. ++|.++++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHH
Confidence 34456777 6666665543
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=96.45 E-value=0.45 Score=40.04 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=65.4
Q ss_pred chhHHHHHHHHhh---hcCCCccHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 32 LVDNAVEVFNKCT---AFNCQQCVLLYNSLLFALCE---------VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 32 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
+.+.|..+|.+.. ..+ |.....|..+..++.. ..+..+|.++-+...+.+.. |......+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Confidence 3456777788877 333 3335555554444332 12334555555555555422 55555555555566
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++++.+...|++....+ +....+|......+.-.|+.++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 666777777777766654 223344444555555567777777777665554
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.45 E-value=0.28 Score=37.66 Aligned_cols=54 Identities=20% Similarity=0.124 Sum_probs=26.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNR---PVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
+...|.+.|.+..|..-++++.+. .+-+. ..+-.+..+|...|-.++|.+.-+-
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 334455566666666666665554 21111 2333444555555555555554433
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.43 E-value=0.18 Score=42.95 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=9.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYY 181 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~ 181 (329)
.|..|.....+.|+++-|.+.|.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444444444444433
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.11 Score=42.44 Aligned_cols=95 Identities=20% Similarity=0.099 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
+++.+.-++.+.+++..|++.-...+..+ ++|.-..---..++...|+++.|...|+++.+..+. |..+-+.++.+-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 44555566666666666666666666554 455555555566666666666666666666665322 3333333333333
Q ss_pred ccCC-HHHHHHHHHHHHH
Q 020193 169 KSGE-VEFCVEMYYSVCK 185 (329)
Q Consensus 169 ~~~~-~~~a~~~~~~~~~ 185 (329)
+..+ .+...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3222 2333556666543
No 234
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.39 E-value=0.061 Score=42.13 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh-----CCCCCCcccHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD-----KGFNPPVRGRD 126 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 126 (329)
..++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 55677778888888888888888888877653 3777788888888888888888888777754 46777777666
Q ss_pred HHHHHH
Q 020193 127 LLVQGL 132 (329)
Q Consensus 127 ~l~~~~ 132 (329)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666653
No 235
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.64 Score=41.11 Aligned_cols=204 Identities=15% Similarity=0.052 Sum_probs=118.0
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH----------HHHHhcCchhHHHHHHHHHHhCCC
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV----------NAWCSSGKMREAQEFLQEMSDKGF 118 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 118 (329)
.|.+..|..+.......-.++-|...|-+...- |.......|- ...+--|.+++|+++|-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 478899999988888888888888777554321 1221111111 11223477888888887775543
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 020193 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197 (329)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 197 (329)
..+..+.+.|++-.+.++++.--.. .-..-...|+.+...++....|+.|.+.|..-.. ...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 3466777788887766665431100 0000124677777777777777777777765322 123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
.+.++.+..++++.+.+-+.+.+ +....-.+.+++.+.|.-++|.+.+-+.- . | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHH
Confidence 45555565566655555444332 44455566777777777777766654321 1 1 123455666666
Q ss_pred HHHHHHHHHH
Q 020193 278 FVEAANYLVE 287 (329)
Q Consensus 278 ~~~a~~~~~~ 287 (329)
|.+|.++-++
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.21 Score=40.84 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=74.0
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 020193 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA 201 (329)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (329)
..+++.+.-++.+.+++..|++..++....+.. |.-....-..++...|+++.|...|.++.+..+ .|..+-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 346778889999999999999999999988644 777777778999999999999999999998543 334444445544
Q ss_pred HHhcCCH-HHHHHHHHHHHhC
Q 020193 202 VSKAGMI-DEAFRLLHNLVED 221 (329)
Q Consensus 202 ~~~~~~~-~~a~~~~~~~~~~ 221 (329)
-.+.... +...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 4444443 3457888888754
No 237
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.16 Score=40.47 Aligned_cols=152 Identities=14% Similarity=0.060 Sum_probs=95.3
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh--HHH--HHHHHHHHhcCchh
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK--RTY--AILVNAWCSSGKMR 104 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~ 104 (329)
-.|++.+|-..++++.+.- |.|...++..=++|.-.|+.+.....+++.... -.||. .+| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3466666666777776643 777777777777888888888777777776643 12222 222 23334455778888
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc---CCccCHHhHHHHHHHHHccCCHHHHHHHHH
Q 020193 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ---GFVLDLETFNSLIETICKSGEVEFCVEMYY 181 (329)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 181 (329)
+|++.-++..+.+ +.|...-.+....+...|++.++.+...+-... +--.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888888777765 455666667777777788888888776654322 000011122223334556688888888887
Q ss_pred HH
Q 020193 182 SV 183 (329)
Q Consensus 182 ~~ 183 (329)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 63
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.32 Score=37.05 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCChhhHH
Q 020193 195 YKILIPAVSKAGMIDEAFRLLHNLVED----GHKPFP-SLYAPIIKGMFRRGQFDDAFCFFSEMKIK---GHPPNRPVYT 266 (329)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 266 (329)
+...-..+.+...+.+|-..+.+-... .--++. ..|-..|-.+....++..|.++++.--+. .-+-+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 344445555666666555544432111 111111 22444444555566677777776664332 1233455666
Q ss_pred HHHHHHhccCCHHHHHHHH
Q 020193 267 MLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~ 285 (329)
.|+.+| ..|+.+++.+++
T Consensus 233 nLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHh-ccCCHHHHHHHH
Confidence 666665 445666555544
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.29 E-value=0.18 Score=42.87 Aligned_cols=158 Identities=16% Similarity=0.090 Sum_probs=98.2
Q ss_pred HHHHccCchhHHHHHHHHhh-hcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 25 EEFGKHGLVDNAVEVFNKCT-AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
+...-.++++++.++.+.-. -..+| ....+.++..+-+.|..+.|+++..+ . ..-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCH
Confidence 44556788888777765211 11222 44578888888889999999877533 2 1234455678888
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
+.|.++.++. .+...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 8887665432 3566888888888888998888888887653 455666777788888877777777
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
...|- ++....++...|+.++..+++.+
T Consensus 400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 400 EERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66553 44455555666788777777754
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.27 E-value=0.14 Score=34.69 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=51.1
Q ss_pred HHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCC
Q 020193 61 ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR---GRDLLVQGLLNAGY 137 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 137 (329)
++...|+.+.|++.|.+....- +-....||.-..++.-.|+.++|+.=+++..+..-+.+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666665542 2255566666666666666666666666655432122221 22233344556666
Q ss_pred hHHHHHHHHHHHHcC
Q 020193 138 LESAKQMVNKMIKQG 152 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~ 152 (329)
.+.|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 677776666666555
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.25 E-value=0.49 Score=38.33 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=21.0
Q ss_pred hcchHHHHHHHHHHHHHcC--CccChHHHHHHHHHHHhcCchhHHHH
Q 020193 64 EVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
...+.++|+..+.+-..+- ...-..++..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 4455556665555544320 11112344455555555555555443
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.21 E-value=0.066 Score=41.49 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHcc-----CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc----------------hHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKH-----GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK----------------LFHGAYAL 74 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~~ 74 (329)
|-.+|-..+..+... +.++-.-..++.|.+.|+..|..+|+.|+..+-+-. +-+=++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 344454445444332 344444455555666666666666666665543211 11124455
Q ss_pred HHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 75 IRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
+++|...|+.||..+-..+++++.+.+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 555555555555555555555554444
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.18 E-value=0.62 Score=38.92 Aligned_cols=128 Identities=15% Similarity=0.155 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcC-CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhH-HHHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQG-FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY-KILIPA 201 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 201 (329)
+|...++...+..-.+.|..+|-++.+.+ ..+++.++++++..++. |+...|..+|+.-...- ||...| ...+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--PDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 44455555555555566666666666555 34455555555554443 45555555555433321 232222 233344
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 202 VSKAGMIDEAFRLLHNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
+...++-..|..+|+..++. +..+ ...|..+|..-..-|+...+..+=+++..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 44555556666666543322 0111 33455555555555555555544444443
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.86 Score=40.37 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhh
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT 44 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 44 (329)
.|.+..|..+.......-.++.|...|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 5888999999988888888888887776654
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.26 Score=38.17 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-C-CCChhhHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGH--KPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-H-PPNRPVYTMLI 269 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~ 269 (329)
.|+.-+..+ +.|++..|..-|...++..+ .-....+-.|..++...|++++|..+|..+.+.- - +--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 466665544 45667888888877776522 1233445567777888888888888777776541 1 11234566666
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 020193 270 TMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777778888888888777754
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.4 Score=36.52 Aligned_cols=115 Identities=7% Similarity=0.013 Sum_probs=61.9
Q ss_pred cCChHHHHHHHHHHHHc---CCc--cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHh
Q 020193 135 AGYLESAKQMVNKMIKQ---GFV--LDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GLCAD-VSTYKILIPAVSK 204 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~ 204 (329)
..++++|++++.+...- +-. --...+...-+.+.+...+.+|-..+.+-... .-.++ ...|...|-.+..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 34566677766654332 100 01223444555666667776665555443211 11122 2345566666777
Q ss_pred cCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 205 AGMIDEAFRLLHNLVEDGH---KPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
..++..|...++.--+.+- .-+..+...|+.+| ..|+.+++.+++
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7788888888887543311 22455667777766 456666665543
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.14 E-value=0.059 Score=41.70 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH-HHHHHHHHHH
Q 020193 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV-EFCVEMYYSV 183 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 183 (329)
-+-+++++++|...|+.||..+-..+++++.+.+-. .+..++.--|
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 345778888888888888888888888888876653 3333333333
No 248
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.18 Score=38.95 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=66.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH--KPFPSLYAPII 234 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 234 (329)
.|+..+.. .+.|++..|...|....+..+.. ....+-.|..++...|+++.|..+|..+.+.-. +--+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655554 45566888888888887764311 234566678888888888888888888776522 11235666677
Q ss_pred HHHHccCChhHHHHHHHHHHHc
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7778888888888888888776
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.12 E-value=0.53 Score=37.54 Aligned_cols=19 Identities=5% Similarity=-0.174 Sum_probs=13.3
Q ss_pred HhcchHHHHHHHHHHHHHc
Q 020193 63 CEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~ 81 (329)
.+.|+++.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 4567777887777776653
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=96.06 E-value=0.74 Score=38.78 Aligned_cols=163 Identities=11% Similarity=0.047 Sum_probs=99.7
Q ss_pred HhH--HHHHHHHHcc-----CCHHHHHHHHHHHHHc-CCCCc-hhhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 020193 158 ETF--NSLIETICKS-----GEVEFCVEMYYSVCKL-GLCAD-VSTYKILIPAVSK---------AGMIDEAFRLLHNLV 219 (329)
Q Consensus 158 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 219 (329)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 5555554431 2356777788887722 23343 3344444433322 233456677777777
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN-RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI-- 296 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 296 (329)
+.+.. |+.....+..+....++++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+. .|.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~ 406 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR 406 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence 76543 6777777777777888899999999988875 344 345555555666789999999988886653 343
Q ss_pred -hhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 297 -SRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 297 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
.......++.|+.. ..++|.+++-...+.
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYKETES 436 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhhcccc
Confidence 33444445566554 477777776555443
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.64 Score=36.57 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
...|++.+|...|+...... +-+...-..+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555555444432 2223334444455555555555555555443
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.87 E-value=0.36 Score=33.56 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=27.8
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLC--ADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (329)
..+.|++++|.+.|+.+...-+. -....--.++.+|.+.+++++|...+++.++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555555543211 112334445555555555555555555555543
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.86 E-value=0.33 Score=33.06 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=68.5
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCccc---HHHHHHHHHhcCChHH
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG---RDLLVQGLLNAGYLES 140 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 140 (329)
-.|..++..+++.+..... +..-+|.+|--....-+-+-..+.++.+-+. -|... ...++.+|.+.|.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc---
Confidence 3466666677776666542 4445566665555555555555555444321 22221 2233444443332
Q ss_pred HHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
+.......+......|+-++..+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2334445556666677777777777776543 236666667777777777777777777777766
Q ss_pred CCC
Q 020193 221 DGH 223 (329)
Q Consensus 221 ~~~ 223 (329)
.|.
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 664
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.85 E-value=0.28 Score=33.35 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccCC
Q 020193 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV---YTMLITMCGRGGR 277 (329)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 277 (329)
+....|+.+.|++.|.+....- +-....||.-.+++.-.|+.++|++=+++..+..-.-+... |..=...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 5567788888888888877653 23667788888888888888888888888776522222222 2222334556788
Q ss_pred HHHHHHHHHHHHhCCCC
Q 020193 278 FVEAANYLVEMTEMGLT 294 (329)
Q Consensus 278 ~~~a~~~~~~~~~~~~~ 294 (329)
-+.|..-|+..-+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88888888887777643
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.81 E-value=1 Score=38.29 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=52.0
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPA 201 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 201 (329)
+-..+..++-+.|+.++|.+.+.++.+.... ....+...|++++...+.+.++..++.+..+...+ .-...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3344666677788888888888888765322 23456778888888888888888888886543331 223456655433
Q ss_pred H
Q 020193 202 V 202 (329)
Q Consensus 202 ~ 202 (329)
+
T Consensus 341 a 341 (539)
T PF04184_consen 341 A 341 (539)
T ss_pred H
Confidence 3
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.80 E-value=0.046 Score=29.34 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 126 DLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..+...|...|++++|.+++++..+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=0.43 Score=33.44 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=19.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
.++..+...+........++.+...+. .+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444445555555555444432 244444555555544
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.74 E-value=1 Score=37.75 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=80.3
Q ss_pred HHccCchhHHHHHHHHhhhcCCCccH------HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH--HH
Q 020193 27 FGKHGLVDNAVEVFNKCTAFNCQQCV------LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA--WC 98 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 98 (329)
+-+.+++.+|..+|.++.+.. ..++ ..-+.++++|.. ++.+.....+..+.+. .| ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456788888988888886542 2221 223455566654 3455555555555543 22 2234444443 34
Q ss_pred hcCchhHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC----CccCHHhH
Q 020193 99 SSGKMREAQEFLQEMSDK--GFNP------------PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG----FVLDLETF 160 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 160 (329)
+.+++.+|.+.+..-... +..+ +...-+..++++...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677788888877766544 2111 11112345677778888888888887776542 23567777
Q ss_pred HHHHHHHHc
Q 020193 161 NSLIETICK 169 (329)
Q Consensus 161 ~~l~~~~~~ 169 (329)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 776655554
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.72 E-value=0.42 Score=33.24 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=21.9
Q ss_pred HccCchhHHHHHHHHhhhcCC--CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 28 GKHGLVDNAVEVFNKCTAFNC--QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.+.|++++|.+.|+.+..+-. +-...+.-.++.+|.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344444444444444443210 111223333444444444444444444444443
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.63 E-value=0.24 Score=36.33 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--hHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--KRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777788888888888888888776543332 34556677777777787777777766644
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.49 Score=42.57 Aligned_cols=176 Identities=17% Similarity=0.221 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHH----HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI----LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
...-+..+.+...++-|+.+-+. .+. |..+... ..+-+.+.|++++|...|-+-... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 33445566666666666665433 222 2333333 333445677788777766555432 122 23455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (329)
-|....+...-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 556666666666777777777766 55666777788888777777666655443 2211 1113344555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
|..+-..... +......+ +-..+++++|.+.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 5544433221 22222222 33455666666655443
No 262
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.46 E-value=1.1 Score=36.08 Aligned_cols=135 Identities=12% Similarity=0.113 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc--cC----CHHHHHHHHHHHHHcCC---CCchhhHHHHHHHHHhcCC-
Q 020193 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICK--SG----EVEFCVEMYYSVCKLGL---CADVSTYKILIPAVSKAGM- 207 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 207 (329)
+++...+++.+.+.|+.-+..+|-+....... .. ....+..+|+.|.+..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34455677788888888777666554333333 22 25678888888887653 2344555555443 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCC--hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 020193 208 ---IDEAFRLLHNLVEDGHKPFPS--LYAPIIKGMFRRGQ--FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274 (329)
Q Consensus 208 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (329)
.+.++.+|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..+.-...-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall 229 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL 229 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence 345677778887777654433 33333332222222 34677888888888888887777766544433
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.38 E-value=0.93 Score=34.95 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHhcchHHHHHHHHHHHHHcC--CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020193 62 LCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133 (329)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (329)
-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|....++....-.......|...|.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 345666677777776666542 111234455555666666677777766666655431122233444444443
No 264
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.37 E-value=1 Score=36.55 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=141.6
Q ss_pred HHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--CCc---cChHHHHHHHHHHHh
Q 020193 27 FGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK--GFV---PDKRTYAILVNAWCS 99 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~ 99 (329)
+....+.++|+..|.....+- ...-..++..+..+.++.|.+++++..--.-.+. ... .--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778889998888776431 1122456778888999999988876543221111 011 112345566666666
Q ss_pred cCchhHHHHHHHHHHhC-CCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CccCHHhHHHHHHHHHcc
Q 020193 100 SGKMREAQEFLQEMSDK-GFNP---PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG-----FVLDLETFNSLIETICKS 170 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 170 (329)
.-++.+++++-..-... |..| ......++..++...+.++++++.|+...+-. ......++..+-+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677777665554432 2122 11233456677778888999999998776531 112335788899999999
Q ss_pred CCHHHHHHHHHHHHHc----CCCCch-h-----hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-ChhhHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKL----GLCADV-S-----TYKILIPAVSKAGMIDEAFRLLHNLVE----DGHKP-FPSLYAPIIK 235 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~----~~~~~~-~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~ 235 (329)
.++++|.-...+..+. ++ .|. . ..-.|.-++...|....|.+.-++..+ .|-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999998777665432 22 221 1 222344566778888888888777543 34222 2234456777
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 020193 236 GMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~ 255 (329)
.|...|+.+.|+.-|+....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 88889999998887777664
No 265
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.37 E-value=0.88 Score=34.59 Aligned_cols=224 Identities=17% Similarity=0.108 Sum_probs=142.8
Q ss_pred cchHHHHHHHHHHHHHcCCcc-ChHHHHHHHHHHHhcCchhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChHHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLESAK 142 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (329)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 455666666666666543221 2456777777888888888888888777652 22344556666777777788888888
Q ss_pred HHHHHHHHcCCccCHHhHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 143 QMVNKMIKQGFVLDLETFNSLIE-TICKSGEVEFCVEMYYSVCKLGL--CADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887754332 222222333 67788888888888888755222 1233344444444666778888888888877
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPN-RPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6532213556677777777788888888888877765 222 334444444444666677777777776654
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.28 E-value=0.35 Score=38.02 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=30.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
++..++..+...|+.+.+...++++....+ -+...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444445555555555555555554433 344455555555555555555555555443
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.26 E-value=0.71 Score=33.89 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc--HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC-hHHHH--H
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC--VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD-KRTYA--I 92 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~ 92 (329)
..+..+...|.+.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+....-..+. ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5688999999999999999999999987653333 45677888999999999999988887765422211 11111 1
Q ss_pred HHH--HHHhcCchhHHHHHHHHH
Q 020193 93 LVN--AWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 93 l~~--~~~~~~~~~~a~~~~~~~ 113 (329)
... .+...+++..|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223456777776666554
No 268
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.20 E-value=0.94 Score=33.98 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=15.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
||--+.+.+...|+.++|..+|+-....
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.14 E-value=0.042 Score=27.97 Aligned_cols=25 Identities=8% Similarity=-0.017 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 300 FDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
|..|...|.+.|++++|.++++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566666666666666655533
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.09 E-value=0.85 Score=32.86 Aligned_cols=28 Identities=14% Similarity=0.386 Sum_probs=13.4
Q ss_pred HHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 76 RRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
+.+.+.+++|+...+..+++.+.+.|.+
T Consensus 18 rSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 18 RSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3333444455555555555555555543
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.08 E-value=1.1 Score=34.04 Aligned_cols=225 Identities=18% Similarity=0.116 Sum_probs=146.3
Q ss_pred cCchhHHHHHHHHhhhcCCC-ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-CCccChHHHHHHHHHHHhcCchhHHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQ-QCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAWCSSGKMREAQ 107 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (329)
.+....+...+......... .....+......+...+.+..+...+...... ........+..........+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35556666666666554411 13567777777888888888888888777652 23335556667777777778888888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--ccCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 108 EFLQEMSDKGFNPPVRGRDLLVQ-GLLNAGYLESAKQMVNKMIKQGF--VLDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
..+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887654222 222333333 67888888888888888755321 1233344444444667788888888888887
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 185 KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
..........+..+...+...++++.+...+......... ....+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7543214567777778888888888888888887765322 2334444444455666788888888777765
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.07 E-value=1.9 Score=36.75 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=36.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
..+..++.+.|+.++|.+.++++.+.. ...+......|+.++...+++.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 445555666677777777777766431 111334555666777777777777777766543
No 273
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.99 E-value=0.038 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=18.9
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHhcchHHHHH
Q 020193 41 NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAY 72 (329)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 72 (329)
++.++.+ |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 556666666666666666666664
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=0.95 Score=32.62 Aligned_cols=123 Identities=12% Similarity=0.118 Sum_probs=52.6
Q ss_pred hcchHHHHHHHHHHHHHcCCccCh-HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc-cHHHH--HHHHHhcCChH
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDK-RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR-GRDLL--VQGLLNAGYLE 139 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~~ 139 (329)
+.+..++|+.-|..+.+.|...=+ -..-.........|+-..|...|+++-.....|... -..-| .-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344455555555555554422100 011112223444555555555555554432222111 01111 11233445555
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (329)
......+.+...+-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555555444333323333344444555556666666666555443
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.92 E-value=1.8 Score=35.78 Aligned_cols=54 Identities=17% Similarity=0.077 Sum_probs=34.4
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
...+..+.|+|+...+......... ++...+.++... +.++++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~~--~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNEDS--PEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCCC--hhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 3566778888888656555554322 345555555444 77888888777776654
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.76 E-value=1.1 Score=32.37 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=61.5
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Q 020193 39 VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF 118 (329)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 118 (329)
.+..+.+.+++|+...+..+++.+.+.|++.... .+...++-+|.......+-.+.. ....+.++--+|..+=
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh-
Confidence 3344445566666666666777766666654433 33334444454444333322221 2233333333332210
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
...+..+++.+...|++-+|+++.+..... +......++++..+.+|...-..+++-..
T Consensus 89 ---~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 89 ---GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 013445556666666666666666554222 11222344555555555444444444443
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.66 E-value=4.1 Score=38.66 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=55.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
.+....+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|..+-.++....-. -..+-..|+.-+...
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHc
Confidence 3334444445666666665554422 123456666777777777776655432100 111224456666667
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 020193 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLV 286 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 286 (329)
+++-+|-++..+.... | .-.+..+++...|++|.++..
T Consensus 1013 ~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred ccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 7777777766665543 1 122333344445556555543
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.39 E-value=1.3 Score=31.61 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=26.5
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.+.++.+++..+++.+.-.. |.....-..-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666555432 222222222334445556666666666665443
No 279
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.34 E-value=1.1 Score=33.28 Aligned_cols=74 Identities=9% Similarity=-0.090 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCChHHHH
Q 020193 68 FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLNAGYLESAK 142 (329)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (329)
-+.|.+.|-.+...+.--++.....|...| ...+.+++.+++-...+.. -.+|+..+.+|+..+.+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 356777777777666544555555555444 4677788888877775432 2567788888888888888887764
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.34 E-value=0.13 Score=26.05 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcchHHHHHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRR 77 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~ 77 (329)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.25 E-value=5.2 Score=38.07 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=68.4
Q ss_pred CchhhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChh--
Q 020193 190 ADVSTYKI----LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP-- 263 (329)
Q Consensus 190 ~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 263 (329)
|+...+.. ....+.....+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -+..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHH
Confidence 45444443 34444556677777766655322 122466777888888888877766432 1221
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
+-..|+.-+...++.-+|-++..+.... | ...+..|++...|++|.++.....
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2255777778888888888888776532 1 223344556666777776655544
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.24 E-value=0.28 Score=31.22 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=44.9
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
+.=++.+-++.+...++.|++.+..+.+++|-+.+++..|.++|+-.+.+. ..+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 445677777777777888888888888888888888888888888776431 1134456655543
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.91 Score=36.06 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=62.0
Q ss_pred CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 020193 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG---LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229 (329)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 229 (329)
......+...++..-....+++.+...+-++.... ..|+...+ ..++.+. .-++++++.++..=+.-|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 33344555555555555667777777777665431 11222111 2222222 2356677777777667777788888
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
++.+++.+.+.+++..|..+...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888887777777666654
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=4.6 Score=36.82 Aligned_cols=176 Identities=12% Similarity=0.094 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHH----HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL----LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 165 (329)
...-+..+.+...++-|+.+-+.- + .+..+... ....+.+.|++++|...+-+.+.. +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 345566666777777776655432 2 22333333 345567889999999988776643 222 23455
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 020193 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245 (329)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (329)
-|....+...-...++.+.+.|. .+...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 55667777888888999999988 566667889999999999999888876654 3322 1224456677777777788
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
|..+-.+... +......++ -..+++++|+++++.+
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8776655442 333334443 3567888888887654
No 285
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=4.7 Score=36.29 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305 (329)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 305 (329)
..-+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..++|++-+++-+.+. .+.-|.-...
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 34455556666777888888888877665 4789999999999999999998777665543 1346677888
Q ss_pred HHHhCCchhHHHHHHHH
Q 020193 306 GLKNCGKHDLAEKIELL 322 (329)
Q Consensus 306 ~~~~~g~~~~a~~~~~~ 322 (329)
+|.+.|+.++|.++.-+
T Consensus 753 ~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPR 769 (829)
T ss_pred HHHhcccHHHHhhhhhc
Confidence 99999999999887644
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.81 E-value=0.79 Score=29.27 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
+.+-+..+...+..|++....+.+++|.+.+++..|.++|+..+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555554444
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.78 E-value=0.19 Score=24.89 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+|..+..++...|++++|.+.++...+++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 34445555555555555555555555444
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.73 E-value=0.72 Score=29.79 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
.+-+..+......|++.+....+.+|.+.+++..|.++|+.++.
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555443
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.72 E-value=3.4 Score=34.16 Aligned_cols=192 Identities=13% Similarity=0.132 Sum_probs=99.0
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC---C-CCCcccHHHHHHHHHh
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG---F-NPPVRGRDLLVQGLLN 134 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~l~~~~~~ 134 (329)
+.+.-+.|+++...+........ .++...+..+... ..++++++....+.....- + ......|......+.+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667788888855555443322 2344445544433 7888888888877765431 0 1112233333333333
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc-----cCCHHHHHHHH---HHHHH--cCCCCchhhHHHHHHHHHh
Q 020193 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-----SGEVEFCVEMY---YSVCK--LGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~---~~~~~--~~~~~~~~~~~~l~~~~~~ 204 (329)
...+.+..++.+-...... +......++..... .++++.-..++ ..+.. ........++..+...+.+
T Consensus 81 lq~L~Elee~~~~~~~~~~--~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk 158 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQ--NPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARK 158 (352)
T ss_pred HhHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 3333333333222211100 01111111111111 11111111111 11111 1123445678888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 205 AGMIDEAFRLLHNLVEDGHKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
.|.++.|...+..+...+... .+.....-++.....|+..+|...++.....
T Consensus 159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999887653221 3444555667778889999999988888773
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.58 E-value=0.22 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.033 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.+..+..++.+.|++++|++.++...+++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 34445555555566666655555555544
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=2 Score=31.05 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=20.8
Q ss_pred cCChHHHHHHHHHHHHcCCccCHH-hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 135 AGYLESAKQMVNKMIKQGFVLDLE-TFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344455555555555443321110 111112223344555555555555444
No 292
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.26 E-value=1.2 Score=33.00 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCChhHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED---GHKPFPSLYAPIIKGMFRRGQFDDA 246 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 246 (329)
.|.+.|-.+...+.--++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444433333233333333333332 33444444444443322 1233444444444444444444443
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=2.7 Score=33.55 Aligned_cols=137 Identities=15% Similarity=0.232 Sum_probs=93.3
Q ss_pred CCccChHHHHHHHHHHHhcCchhHHHHHHHHHH----------hCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 82 GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMS----------DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++|...-| .|.++|.....|+.-....-.+- ..|.+.+..+...++..-....+++.+...+-++...
T Consensus 15 ~l~p~~rr~-~LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs 93 (418)
T KOG4570|consen 15 QLSPAGRRY-LLSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS 93 (418)
T ss_pred cCCchhcch-hhHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcC
Confidence 344543332 36677777777776555543332 2344555566666666666778899999888877654
Q ss_pred C---CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 152 G---FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 152 ~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
. ..|+. +-.+.++.+ -.-++++++.++..-++-|+-||..+++.+|..+.+.+++.+|..+.-.|...
T Consensus 94 ~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 94 PNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred cchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1 11221 222333333 34567799999988889999999999999999999999999999998887755
No 294
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.18 E-value=0.96 Score=33.95 Aligned_cols=77 Identities=16% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC--CccChHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNA 96 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 96 (329)
+.+..++.+.+.+++++|+...+.-++.. |.|...-..+++.++-.|++++|..-++-.-... ..+-..+|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556777888888899888888877766 7777888888899999999999887776655432 23344566666654
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.95 E-value=5.1 Score=33.89 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=35.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCC----CccHHHHHHHHHHHHh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNC----QQCVLLYNSLLFALCE 64 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 64 (329)
=+..+.++...|++.++..+++++...-. .-+..+|+.++-.+.+
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH
Confidence 36677888999999999999988865433 4789999987666654
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.85 E-value=0.066 Score=37.71 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5566666777777778888877665555677778888888888777777776651 122333456677777777
Q ss_pred HHHHHHHHHHHH
Q 020193 278 FVEAANYLVEMT 289 (329)
Q Consensus 278 ~~~a~~~~~~~~ 289 (329)
++++.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 777777776654
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.79 E-value=4.3 Score=32.69 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh--cC----ChHHHHHHHHHHHHcCCc---cCHHhHHHHHHHHHccCC-
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN--AG----YLESAKQMVNKMIKQGFV---LDLETFNSLIETICKSGE- 172 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~- 172 (329)
+++...+++.+.+.|+..+..+|-+..-.... .. ...+|..+++.|++..+- ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988777666553333332 22 356788999999987432 334455555443 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 173 ---VEFCVEMYYSVCKLGLCADV--STYKILIPAVSKAGM--IDEAFRLLHNLVEDGHKPFPSLYAPIIKG 236 (329)
Q Consensus 173 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (329)
.+.+..+|+.+.+.|...+. ...+.++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 35667788888887775543 333344433332222 44788899999999998887777655443
No 298
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.78 E-value=2 Score=31.92 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=59.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 020193 201 AVSKAGMIDEAFRLLHNLVEDGHKPF-----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275 (329)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (329)
-+.+.|++++|..-|...++. +++. ...|..-..++.+.+.++.|+.-..+..+.+.. .......-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 466788999998888888775 2222 223445556677888888888777777765311 122222223467777
Q ss_pred CCHHHHHHHHHHHHhCC
Q 020193 276 GRFVEAANYLVEMTEMG 292 (329)
Q Consensus 276 ~~~~~a~~~~~~~~~~~ 292 (329)
..+++|+.-|+.+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888887654
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.55 E-value=0.19 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHccCCHHHH
Q 020193 157 LETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a 176 (329)
...|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444433
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.50 E-value=4.4 Score=32.07 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHHHHH-cCCccChHHHHHHHHHHHh-cCc-hhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChHH
Q 020193 65 VKLFHGAYALIRRMIR-KGFVPDKRTYAILVNAWCS-SGK-MREAQEFLQEMSDK-GFNPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
+....+|+.+|+..-. ..+--|..+...+++.... .+. ...-.++.+-+... +-.++..+...+++.++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3345566666663221 2344466777777776665 221 22222333333222 235666677777777777777777
Q ss_pred HHHHHHHHHHc-CCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 141 AKQMVNKMIKQ-GFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 141 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
-.++++..... +...|...|..+++.....|+..-...+.++
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77777766654 5555777777777777777777655555443
No 301
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.38 E-value=0.4 Score=23.67 Aligned_cols=29 Identities=10% Similarity=-0.006 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
+|..+...|...|++++|.+.++...+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44555556666666666666666655544
No 302
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.27 E-value=8.5 Score=34.81 Aligned_cols=159 Identities=13% Similarity=0.134 Sum_probs=61.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHc---
Q 020193 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HKPFPSLYAPIIKGMFR--- 239 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 239 (329)
...+.-.|+++.|.+.+.. ..+...+.+.+...+..|.-.+-.+... ..+.... -.|.+..+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455567888888888766 2223345555544444332222111111 2222111 11122456777777765
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHH-HHhccCCHHHHH-----------HHHHHHHh-CCCCCC----hhhHHH
Q 020193 240 RGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT-MCGRGGRFVEAA-----------NYLVEMTE-MGLTPI----SRCFDL 302 (329)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-----------~~~~~~~~-~~~~p~----~~~~~~ 302 (329)
..+..+|.+.+--+....-+.....+...+. .....++++.-+ .++++-.+ .++..+ ......
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 3456677776666554322111222222222 112222222111 11211000 012211 123333
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 303 VTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 303 l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
...-+...|++++|..++.+..+.+
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d 444 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD 444 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH
Confidence 4455667888888888888876654
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.19 E-value=0.51 Score=23.19 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
|..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444444445555555555544443
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.12 E-value=2 Score=32.35 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=28.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
-++.+.+.++..+++...+.-.+.. +.+..+-..+++.++-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444445555555555555544443 3344445555555555666655555554443
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.10 E-value=0.37 Score=25.08 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
+++.|...|...|++++|.++++....
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 444445555555555555555444433
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.99 E-value=3.9 Score=30.27 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=56.9
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD-----LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETI 167 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 167 (329)
+...+...+++++|..-++...... ....+. .|.+.....|.+++|+.+++...+.+.. ......-...+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 3456677788888887777766432 222222 3445667778888888888777655332 22233444567
Q ss_pred HccCCHHHHHHHHHHHHHcC
Q 020193 168 CKSGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~ 187 (329)
...|+.++|..-|......+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 77788888888888777765
No 307
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.97 E-value=2.3 Score=27.59 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=27.6
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 35 NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666543
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.91 E-value=1.7 Score=34.22 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (329)
..+++...+.|..+|.+.+|.++.+.....+ +.+...+..+++.+...||--.+.+-++.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3455666778888999999999888887764 447778888888999888877777776665
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=5.9 Score=32.11 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH----HhHHHHHHHHHccCCHHHH
Q 020193 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL----ETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 176 (329)
|++.+|-..++++.+. .|.|...+...-.++.-.|+...-...++++... ..+|. ..-..+.-++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444443 2444444444445555555555555555544433 01111 1111222333345555555
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
++.-++..+.+. .|.-.-.+....+.-.|+..++.++..+
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444332 3333333444444445555555544443
No 310
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.71 E-value=8.6 Score=33.69 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 020193 192 VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271 (329)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (329)
..+|..-+..-.+.|+.+.+.-+|++..-. +..-...|-..+.-....|+.+-|..++....+-.++ +......+-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHH
Confidence 345555555555666666666666665432 1111223333333334446666666665555444222 22222222222
Q ss_pred H-hccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHH
Q 020193 272 C-GRGGRFVEAANYLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 272 ~-~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 317 (329)
+ -..|++..|..+++...+.- |+ ...-..-+....+.|..+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 23567777777777776543 33 222222334455666666665
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.35 E-value=0.69 Score=24.01 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.11 E-value=0.073 Score=37.49 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=46.6
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555666667777777777765554455667777777777776656666555411 11222345555555555
Q ss_pred hhHHHHHHHH
Q 020193 103 MREAQEFLQE 112 (329)
Q Consensus 103 ~~~a~~~~~~ 112 (329)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.01 E-value=0.98 Score=22.21 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
|..+..++...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.89 E-value=3.5 Score=35.08 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=39.2
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (329)
.+...|+++.+.+.+...... +.....+..++++...+.|+++.|..+-.-|....+. ++..........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344455555555554444322 1233344555555555555555555555555544333 33332222222233344444
Q ss_pred HHHHHHHHH
Q 020193 176 CVEMYYSVC 184 (329)
Q Consensus 176 a~~~~~~~~ 184 (329)
+.-.|+++.
T Consensus 410 ~~~~wk~~~ 418 (831)
T PRK15180 410 SYHYWKRVL 418 (831)
T ss_pred HHHHHHHHh
Confidence 444444443
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.80 E-value=4.3 Score=28.56 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=26.0
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
..++++++..+++.+.-.. |.....-..-...+...|++++|..+|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3556666666666554432 222222222233445566666666666665554
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.79 E-value=5.8 Score=30.02 Aligned_cols=185 Identities=12% Similarity=0.027 Sum_probs=102.9
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHH
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (329)
|-..|-+..|.-=|.+..... |.-+..||-+.-.+...|+++.|.+.|+...+....-+-...|.-+ ++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 445566666666666665543 2335678888888888899999999998888875443322223222 23446788888
Q ss_pred HHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 177 VEMYYSVCKLGL-CADVSTYKILIPAVSKAGMIDEAFRLLH-NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
.+-+-..-+.++ .|-...|--+. ...-++.+|..-+. +.... +..-|...|-.|. .|+. ....+++++.
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-Lgki-S~e~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKI-SEETLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhc-cHHHHHHHHH
Confidence 777666655432 12222232222 23345666654443 33322 3344444333322 1222 1223344443
Q ss_pred HcCCCC-------ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 020193 255 IKGHPP-------NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL 293 (329)
Q Consensus 255 ~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 293 (329)
.. -.. -..||--+.+-+...|+.++|..+|+-.+..++
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 32 111 135677777788888999999999988775543
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.74 E-value=0.83 Score=36.75 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=56.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC--
Q 020193 200 PAVSKAGMIDEAFRLLHNLVEDGHKP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG-- 276 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 276 (329)
.-|.+.|.+++|++.|...... .| |+.++..-..+|.+...+..|+.=....... | ...+.+|.+.+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHH
Confidence 3588999999999999886654 34 7788888888899988888887766665543 1 22445555544
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCh
Q 020193 277 -----RFVEAANYLVEMTEMGLTPIS 297 (329)
Q Consensus 277 -----~~~~a~~~~~~~~~~~~~p~~ 297 (329)
...+|.+-++...+ +.|+.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHhhHHHHHHhHHHHHh--hCccc
Confidence 44444444444433 45653
No 318
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.50 E-value=6.2 Score=31.08 Aligned_cols=89 Identities=10% Similarity=0.071 Sum_probs=55.6
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc--
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-- 169 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 169 (329)
.=|.+++..++|.+++...-+-.+..-+..+.....-|-.|.+.+.+..+.++-..-....-.-+...|.++++.|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 346788888888887776555543321222344555566778888888888777766554222234447666665544
Q ss_pred ---cCCHHHHHHHH
Q 020193 170 ---SGEVEFCVEMY 180 (329)
Q Consensus 170 ---~~~~~~a~~~~ 180 (329)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 68888887776
No 319
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=90.44 E-value=6.7 Score=30.90 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcC-----C-CccH-------HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFN-----C-QQCV-------LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (329)
......+.+.-..||..|++.-++-.+.= . .++. .....=|++++..+++.+++...-+-.+..-+.
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 34445555666788888888877654210 0 1111 112334788999999999988876665543222
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-----cCChHHHHHHH
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN-----AGYLESAKQMV 145 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~ 145 (329)
.......-|-.|.+.+.+..+.++-..-.+..-..+...|.+++..|.. .|.+++|+++.
T Consensus 117 PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3345666677789999999998888777665333445558887777665 59999999887
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.37 E-value=13 Score=33.26 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHH--HH-HHhcCchhHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHhcC-
Q 020193 68 FHGAYALIRRMIRKGFVPDKRTYAILV--NA-WCSSGKMREAQEFLQEMSD-------KGFNPPVRGRDLLVQGLLNAG- 136 (329)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 136 (329)
...+.++++.....|.. ........+ .+ +....|.+.|..+++.... .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888777622 111122222 22 3456689999999988866 44 3446667777777753
Q ss_pred ----ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH--hcCCHH
Q 020193 137 ----YLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVS--KAGMID 209 (329)
Q Consensus 137 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~ 209 (329)
+...|..++.+..+.|.+ +....-..+..... ..+...|.++|....+.|. +....+..++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 567799999988888744 44433333322222 2467899999999888775 33333322222222 335688
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 020193 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH 258 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 258 (329)
.|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 89999999888873 222222222333333 667776666666665543
No 321
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.29 E-value=11 Score=32.39 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCCCCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHH-------cCCCCCh----
Q 020193 202 VSKAGMIDEAFRLLHNLV---EDGHKPF-----PSLYAPIIKGMFRRGQFDDAFCFFSEMKI-------KGHPPNR---- 262 (329)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~---- 262 (329)
+.-.|++.+|.+++-..- +.|...+ ...+|.+...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344677777777665422 1121111 12235555556666666666666666553 2443321
Q ss_pred -------hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 020193 263 -------PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN 309 (329)
Q Consensus 263 -------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 309 (329)
.+|| ..-.|...|++-.|.+.|.+.... +..++..|-.|.++|..
T Consensus 330 s~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1222 233456778888888888777643 34567788888877754
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.19 E-value=13 Score=33.16 Aligned_cols=244 Identities=15% Similarity=0.081 Sum_probs=138.1
Q ss_pred hhHHHHHHHHhhhcCCCccHHHHHHHHHH-----HHhcchHHHHHHHHHHHHH-------cCCccChHHHHHHHHHHHhc
Q 020193 33 VDNAVEVFNKCTAFNCQQCVLLYNSLLFA-----LCEVKLFHGAYALIRRMIR-------KGFVPDKRTYAILVNAWCSS 100 (329)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 100 (329)
...|...++...+.| +......+..+ +....+++.|+.+|....+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887776 33333333222 3356789999999998877 44 233456677777664
Q ss_pred C-----chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc---CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH--cc
Q 020193 101 G-----KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA---GYLESAKQMVNKMIKQGFVLDLETFNSLIETIC--KS 170 (329)
Q Consensus 101 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~ 170 (329)
. +.+.|..++...-+.|. |+.... +...+... .+...|.++|....+.|.. +...+..++-... ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 3 56779999998888773 433333 33333332 4578999999999988754 2222222222222 34
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH----HHc----cCC
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG----MFR----RGQ 242 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~----~~~ 242 (329)
.+.+.|..++.+..+.|. |....-...+..+.. +.++.+...+..+.+.+.. ...+-...+.. ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 578999999999988873 443333333344444 7777777777666665543 22221111111 111 123
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCC
Q 020193 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR----GGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 292 (329)
.+.+...+......| +......+...|.. ..+++.|...+......+
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 455556666555443 33444444444432 234555666555554443
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.11 E-value=7.8 Score=34.13 Aligned_cols=150 Identities=18% Similarity=0.087 Sum_probs=92.6
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHH
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQ 107 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 107 (329)
.-.|+++.|..++..+. ....+.++..+-+.|-.++|+++- +|... -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence 44677777777655443 233455666677777777776542 23221 223345677888877
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 020193 108 EFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (329)
++..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7665542 345688888888888888888888876653 3455566666777665555555555554
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 188 LCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
. .|.. .-+|...|+++++.+++..
T Consensus 723 ~-~N~A-----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 K-NNLA-----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred c-cchH-----HHHHHHcCCHHHHHHHHHh
Confidence 3 3322 2345567888888777754
No 324
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=89.98 E-value=1.9 Score=29.14 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHccC--chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHG--LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+.+-|+.--.-|.... |-=+..+.++.+...++.|++.....-++++-+.+++..|.++|+-.+.+ ..+....|-.+
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYY 124 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 4444444444444432 23346667777777778888888888888888888888888888777654 12222245544
Q ss_pred HH
Q 020193 94 VN 95 (329)
Q Consensus 94 ~~ 95 (329)
+.
T Consensus 125 v~ 126 (149)
T KOG4077|consen 125 VK 126 (149)
T ss_pred HH
Confidence 44
No 325
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.88 E-value=5.6 Score=28.45 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=23.1
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHH-HHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYA-ILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
+.++.+++..++..+.-. .|...... .-...+...|+|.+|..+|+.+...
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445555555555555433 22221111 1122344555666666666655443
No 326
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.88 E-value=12 Score=32.33 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=98.0
Q ss_pred cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHH
Q 020193 85 PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 164 (329)
.|.....+++..+.....+.-...+..+|...| .+...+..++++|... ..+.-..+|+++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355556677777777777777777777777765 4566677777777777 556667777777766443 444444444
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCC-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 020193 165 ETICKSGEVEFCVEMYYSVCKLGLCA-----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMF 238 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 238 (329)
.-|-+ ++.+.+...|.++...-++. -...|..+...- ..+.+....+...+... |...-...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44444 66667777776665442210 112344444321 24556666666665543 33333444555556677
Q ss_pred ccCChhHHHHHHHHHHHc
Q 020193 239 RRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~ 256 (329)
...++++|++++..+.+.
T Consensus 217 ~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 217 ENENWTEAIRILKHILEH 234 (711)
T ss_pred cccCHHHHHHHHHHHhhh
Confidence 777777777777766655
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.64 E-value=2.1 Score=26.23 Aligned_cols=47 Identities=11% Similarity=-0.052 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCchhHHHHHH
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPI--SRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
..++.++|+..|+...+.-..|. -.++..++.+++..|+++++.++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777665433322 335666777777777777776663
No 328
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.58 E-value=5.6 Score=27.97 Aligned_cols=83 Identities=12% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcC-----CccChHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKG-----FVPDKRTYAILVNAWCSSGK-MREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
.|.++.-....+++.....+++.+..-. -..+...|..++.+..+... --.+..+|.-+++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555555555555555443211 01244567777776655554 34455666666666666667777777
Q ss_pred HHHHHhcCC
Q 020193 129 VQGLLNAGY 137 (329)
Q Consensus 129 ~~~~~~~~~ 137 (329)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 776665533
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.18 E-value=1.4 Score=21.33 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=9.3
Q ss_pred HHHHhcchHHHHHHHHHHHHH
Q 020193 60 FALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~ 80 (329)
.++.+.|++++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334444444444444444443
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.07 E-value=10 Score=30.19 Aligned_cols=137 Identities=9% Similarity=0.140 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHh-cC-CHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHH
Q 020193 173 VEFCVEMYYSVCK-LGLCADVSTYKILIPAVSK-AG-MIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFC 248 (329)
Q Consensus 173 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 248 (329)
+.+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+... +-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4556666653221 2234566666666666554 22 222233333333322 345677778888888888888888888
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHH-----HHhCCCCCChhhHHHHHHHHHh
Q 020193 249 FFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVE-----MTEMGLTPISRCFDLVTDGLKN 309 (329)
Q Consensus 249 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~~~~~ 309 (329)
+++..... +..-|...|..+++.....|+..-..++..+ +...++..+...-..+-+.+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 88877655 5556778888888888888887766666554 2234555555555555444433
No 331
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.04 E-value=6.1 Score=28.89 Aligned_cols=110 Identities=22% Similarity=0.139 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc---chHHHHHHHHHHHHHc-----CCccCh-HHHHHHHHHHHhcC--
Q 020193 33 VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV---KLFHGAYALIRRMIRK-----GFVPDK-RTYAILVNAWCSSG-- 101 (329)
Q Consensus 33 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~l~~~~~~~~-- 101 (329)
++.|.+..+.-...+ |.|...++.-..++... ....++.+++++...+ .+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666655555 66666555444443332 2223344444333321 134443 45555555554332
Q ss_pred --c-------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 102 --K-------MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 102 --~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
+ +++|...|++..+. .|+...|+.-+.... +|-++..++.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 1 34444444444443 366666666555542 344455554444
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.74 E-value=0.71 Score=21.30 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHccCchhHHHHHH
Q 020193 21 SLIIEEFGKHGLVDNAVEVF 40 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~ 40 (329)
..+...+...|++++|.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34445555555555555544
No 333
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.74 E-value=8.3 Score=28.83 Aligned_cols=89 Identities=18% Similarity=0.070 Sum_probs=52.3
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPP-----VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 446677777777777666542 221 123444445666777777777777666666432 2223333345666777
Q ss_pred CHHHHHHHHHHHHHcC
Q 020193 172 EVEFCVEMYYSVCKLG 187 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~ 187 (329)
.++.|+.-|..+.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 7777777777777654
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.30 E-value=1.6 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
..+|...|+.+.|.++++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.21 E-value=1.6 Score=23.39 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=9.3
Q ss_pred HHHHHhcchHHHHHHHHHHHH
Q 020193 59 LFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~ 79 (329)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 336
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=87.32 E-value=16 Score=32.75 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
+.|++.+|.+.+-.+.+.+..|...-...|.++
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ---------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 447777777777777776666665544444443
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.13 E-value=2.1 Score=20.95 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777654
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.50 E-value=28 Score=32.45 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCH-------HhHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCchhhHHHHH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDL-------ETFNSLI-ETICKSGEVEFCVEMYYSVCKL----GLCADVSTYKILI 199 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 199 (329)
.....++++|..++.++...-..|+. ..++.+- ......|+++.|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34456777777777766554222211 1233222 2233467777777776665432 2223445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 020193 200 PAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 6667778888877777665543
No 339
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.30 E-value=17 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
.-|..|..+..+.+++..|.+.|.+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHh
Confidence 3444444444455555444444443
No 340
>PRK09687 putative lyase; Provisional
Probab=85.35 E-value=17 Score=29.05 Aligned_cols=235 Identities=10% Similarity=-0.012 Sum_probs=134.6
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch----hHHHHHHHHHHhCCCCCCcccH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM----REAQEFLQEMSDKGFNPPVRGR 125 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 125 (329)
+|.......+.++...|. +.+...+..+... +|...-...+.++...|+. +++...+..+... .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 455566666666666654 3344444444432 3555556666677777653 4566666665333 2555555
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 020193 126 DLLVQGLLNAGYL-----ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200 (329)
Q Consensus 126 ~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
...+.++...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHH
Confidence 5566666554421 223333333332 23566666777777777764 455555555543 44455555556
Q ss_pred HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHH
Q 020193 201 AVSKAG-MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279 (329)
Q Consensus 201 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (329)
++.+.+ ..+.+...+..+.. .++..+-...+.++.+.|+ ..+...+-+..+.+ + .....+.++...|+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 665543 23455555555553 3466666777788888877 45555555555442 2 234677788888875
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 020193 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKN 309 (329)
Q Consensus 280 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 309 (329)
+|...+..+.+.. ||..+-...+.++.+
T Consensus 252 ~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 6788887777533 466666666666543
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.76 E-value=25 Score=30.31 Aligned_cols=130 Identities=10% Similarity=0.049 Sum_probs=84.9
Q ss_pred HHHHHHHHccCchhHHHH-HHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 21 SLIIEEFGKHGLVDNAVE-VFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
..-|.--...|+.-.|.+ ++..+....-.|+.... ........|+++.+.+.+...... +.....+...+++....
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~ 369 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG 369 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc
Confidence 334444556677766654 44444443223443333 334456789999999988776543 34456688899999999
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
.|+++.|...-+.|....+. ++.......-..-..|-++++...|+++...+.+
T Consensus 370 l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 370 LARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 99999999999988876643 3333333333344567789999999988765433
No 342
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=84.47 E-value=6.7 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.025 Sum_probs=21.9
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 58 LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
++..+.+.++.-.|.++++.+.+.++..+..|...-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555555544444444444445555444
No 343
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.44 E-value=17 Score=28.05 Aligned_cols=24 Identities=4% Similarity=0.104 Sum_probs=15.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 020193 201 AVSKAGMIDEAFRLLHNLVEDGHK 224 (329)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~ 224 (329)
.-...+++.+|..+|+++......
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334556777788887777665443
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.41 E-value=10 Score=25.85 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
+-+..+..-++.|++.....-+.++.+.+++..|.++|+-++.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344444455555555555556666666666666666555543
No 345
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.39 E-value=12 Score=26.43 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=9.7
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 020193 132 LLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~ 151 (329)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34445555555555554444
No 346
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=83.38 E-value=5.7 Score=24.84 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
|+...|..-++...... .+++ ++|+-....|+..|+..|..++..+.-+=.++...++++.|...
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 45666666665433332 2333 88999999999999999999999988888888999999888754
No 347
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.29 E-value=6.8 Score=31.87 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchh
Q 020193 25 EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (329)
+.|.++|.+++|+..|....... |-|..++..-..+|.+.+.+..|..=.......+-. =...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45778899999999999887765 558888888888999998888777666665543200 1123333333334445555
Q ss_pred HHHHHHHHHHh
Q 020193 105 EAQEFLQEMSD 115 (329)
Q Consensus 105 ~a~~~~~~~~~ 115 (329)
+|.+=++....
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 55555555544
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.41 E-value=33 Score=29.93 Aligned_cols=180 Identities=9% Similarity=0.009 Sum_probs=125.5
Q ss_pred CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 020193 119 NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198 (329)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (329)
+.|.....+++..+.....+.-+..+..+|..-| .+...|..++++|... ..++-..+|+++.+... .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566777889999999999999999999999875 3678899999999988 66788899999988765 445555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVEDGHK-----PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMC 272 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 272 (329)
...|-+ ++.+.+..+|..+...-++ .-...|.-+... -..+.+....+..++... |...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 8888999999887754221 012244444432 134667777777776543 4444455666677788
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
....++++|++++..+.+..- -|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 899999999999998776542 233333444443
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.34 E-value=71 Score=33.75 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=81.1
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCC--CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNC--QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
.+..+-.+++.+.+|...++.-..... ......|..+...|...+++|+..-+...-.. +.. ...-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence 455566788999999999988421111 12234455555589999999988877764111 222 2334445667
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
.|+|..|...|+.+.+.+ ++...+++.+++.....|.++.+.-..+-...
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~ 1511 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLII 1511 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhh
Confidence 899999999999998876 45577788777777777777666665554443
No 350
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.55 E-value=20 Score=26.78 Aligned_cols=91 Identities=14% Similarity=0.030 Sum_probs=42.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 020193 200 PAVSKAGMIDEAFRLLHNLVEDGHKP--FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
..+...+++++|...++......... ....--.|.......|.+++|..+++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 34455566666666665544321100 011112233444555666666666655544321 11222333445566666
Q ss_pred HHHHHHHHHHHHhCC
Q 020193 278 FVEAANYLVEMTEMG 292 (329)
Q Consensus 278 ~~~a~~~~~~~~~~~ 292 (329)
-++|..-|+...+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666665543
No 351
>PHA02875 ankyrin repeat protein; Provisional
Probab=81.13 E-value=34 Score=29.21 Aligned_cols=208 Identities=10% Similarity=0.031 Sum_probs=105.3
Q ss_pred HHHhcchHHHHHHHHHHHHHcCCccChHH--HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHHhcC
Q 020193 61 ALCEVKLFHGAYALIRRMIRKGFVPDKRT--YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--GRDLLVQGLLNAG 136 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 136 (329)
..+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|
T Consensus 8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34455666544 44456677766533 234555666777765 444555566544432 2234456667788
Q ss_pred ChHHHHHHHHHHHHcCCccCHH---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCCHHHH
Q 020193 137 YLESAKQMVNKMIKQGFVLDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST--YKILIPAVSKAGMIDEA 211 (329)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a 211 (329)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+-+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 8876655554 33221111 1123344445667664 4445555665554321 12234445567777665
Q ss_pred HHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccCCHHHHHHHH
Q 020193 212 FRLLHNLVEDGHKPF---PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV---YTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~ 285 (329)
..++ +.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..|+... ....+...+..|+.+ +.
T Consensus 152 ~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 152 ELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred HHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 5554 3443332 22233333 344556654 3444556666655432 123444344556654 55
Q ss_pred HHHHhCCCCCCh
Q 020193 286 VEMTEMGLTPIS 297 (329)
Q Consensus 286 ~~~~~~~~~p~~ 297 (329)
+.+.+.|..++.
T Consensus 219 ~~Ll~~gad~n~ 230 (413)
T PHA02875 219 RLFIKRGADCNI 230 (413)
T ss_pred HHHHHCCcCcch
Confidence 556677877764
No 352
>PRK09462 fur ferric uptake regulator; Provisional
Probab=80.73 E-value=13 Score=26.39 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=23.7
Q ss_pred hhhhhCCCCCCHHHHHHHHHHHHc-cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 020193 6 ELMKPYNLSVSPQTLSLIIEEFGK-HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64 (329)
Q Consensus 6 ~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (329)
+.+++.|+++++.-... +..+.. .+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 6 ~~l~~~glr~T~qR~~I-l~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e 64 (148)
T PRK09462 6 TALKKAGLKVTLPRLKI-LEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (148)
T ss_pred HHHHHcCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 34444555544433222 222222 23344555555555544433333333333333333
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.59 E-value=27 Score=27.82 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHh-------HHHHHHHHHccCCHHHHHHHH
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLET-------FNSLIETICKSGEVEFCVEMY 180 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~ 180 (329)
-+.+-..+.+++++|...+.++...|...+..+ ...+...|...|+....-+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 345556677788888888888887776655543 334555566666655444433
No 354
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.52 E-value=26 Score=27.62 Aligned_cols=202 Identities=10% Similarity=0.077 Sum_probs=122.3
Q ss_pred CCCCCCHHHHHHHHHHH-HccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHc---CC
Q 020193 11 YNLSVSPQTLSLIIEEF-GKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRK---GF 83 (329)
Q Consensus 11 ~g~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 83 (329)
.+-.||+..-|..-..- .+..++++|+.-|++..+..-... -.+...++....+.+++++....|.+|+.- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 44566665544322221 244588999999999876432222 334556788899999999999999888632 11
Q ss_pred --ccChHHHHHHHHHHHhcCchhHHHHHHHHHHh----CC-CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 020193 84 --VPDKRTYAILVNAWCSSGKMREAQEFLQEMSD----KG-FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----- 151 (329)
Q Consensus 84 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 151 (329)
.-+..+.|+++.....+.+.+....+++.-.+ .. -..--.|-..+...|...+.+.+..++++++..+
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 12345667777776666666665555554322 11 0111123345778888888888888888887653
Q ss_pred CCc------cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCchhhHHHHHHHH-----HhcCCHHHHHH
Q 020193 152 GFV------LDLETFNSLIETICKSGEVEFCVEMYYSVCKLG-LCADVSTYKILIPAV-----SKAGMIDEAFR 213 (329)
Q Consensus 152 ~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~ 213 (329)
|-. .-...|..-++.|....+-.+...+|++..... -.|.+.... .|+-| .+.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 110 023467777788888888888888888765321 224443333 33333 35677776644
No 355
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.39 E-value=54 Score=31.07 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=12.1
Q ss_pred HHccCchhHHHHHHHHhh
Q 020193 27 FGKHGLVDNAVEVFNKCT 44 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~ 44 (329)
+..++++++|.+.|.++.
T Consensus 356 lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 356 LFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHhhhHHHHHHHHHhhc
Confidence 345677777777777654
No 356
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.96 E-value=12 Score=23.52 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=17.7
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
..|+.+.|.+++..+. .| +..|..++.++...|+-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3345555555555554 33 234555555555555443
No 357
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.95 E-value=12 Score=27.83 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=35.0
Q ss_pred ccCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 239 RRGQFDDAFCFFSEMKIK-GHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..++.+......+.+.+. ...|++.+|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445544444433333322 24688888888888888888888888888887753
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.93 E-value=23 Score=31.35 Aligned_cols=99 Identities=17% Similarity=0.009 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 144 (329)
.|+...|...+.........-..+....|.+...+.|....|..++.+..... ...+-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 56677777766665543222233344556666666777777777776665554 34455666777777777888888888
Q ss_pred HHHHHHcCCccCHHhHHHHHH
Q 020193 145 VNKMIKQGFVLDLETFNSLIE 165 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~ 165 (329)
|++..+.... +...-+.|..
T Consensus 699 ~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 699 FRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred HHHHHhcCCC-ChhhHHHHHH
Confidence 8777766433 4444444443
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.70 E-value=13 Score=23.48 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=19.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHH
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 317 (329)
..|+.+.|.+++..+. +|. ..|...+.++...|.-.-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhhh
Confidence 3455555555555554 331 24555555555555544443
No 360
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.69 E-value=19 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=11.6
Q ss_pred HHHccCChhHHHHHHHHHHH
Q 020193 236 GMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~ 255 (329)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45556666666666655554
No 361
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.58 E-value=36 Score=28.64 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHc--CCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
..+.-+...|...|+++.|++.|.+...- ..+..+..|-.+|....-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 34566677777788888888888774432 11223445666666667777777777666666543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.39 E-value=10 Score=23.36 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=7.1
Q ss_pred HHHHHHHHhcCchhHHH
Q 020193 91 AILVNAWCSSGKMREAQ 107 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~ 107 (329)
..++.+++..|++.+++
T Consensus 47 G~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 363
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.60 E-value=41 Score=28.69 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.6
Q ss_pred HHHHHhcCchhHHHHHH
Q 020193 94 VNAWCSSGKMREAQEFL 110 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~ 110 (329)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33444555554443333
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.54 E-value=16 Score=23.85 Aligned_cols=49 Identities=29% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (329)
+...|++++|..+.+.. ..||...|.++.. .+.|.-+++..-+.++..+
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34445555554444433 2344444444332 3344444444444444443
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.16 E-value=14 Score=27.60 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=37.9
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 203 SKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
....+.+......+.+.+. ...|++.+|..++..+...|+.++|.++..++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555555544444332 35678888888888888899999998888888764
No 366
>PRK09687 putative lyase; Provisional
Probab=78.04 E-value=34 Score=27.45 Aligned_cols=18 Identities=6% Similarity=-0.188 Sum_probs=8.7
Q ss_pred CchhhHHHHHHHHHhcCC
Q 020193 190 ADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~ 207 (329)
++..+-...+.++.+.++
T Consensus 204 ~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD 221 (280)
T ss_pred CChHHHHHHHHHHHccCC
Confidence 344444445555555554
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.96 E-value=16 Score=23.76 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=36.8
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 111 (329)
..++|..+-+.+...+ .....+--.-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 3455555555554432 111111112233445566666666655443 2455555544432 34555555555555
Q ss_pred HHHhCC
Q 020193 112 EMSDKG 117 (329)
Q Consensus 112 ~~~~~~ 117 (329)
.+...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555554
No 368
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=77.82 E-value=12 Score=27.29 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=37.6
Q ss_pred hhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchh
Q 020193 43 CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104 (329)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (329)
+...|+..+..-. .++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3444544443332 444555555556677888888877776667777666777777777543
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.57 E-value=4.2 Score=18.67 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=15.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
.+..+...+...|+++.|...++...
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555666666666666665544
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.49 E-value=39 Score=27.79 Aligned_cols=138 Identities=10% Similarity=0.034 Sum_probs=74.1
Q ss_pred CccHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 49 QQCVLLYNSLLFALCEV------------KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
|-|+.+|-.++..--.. .-.+.-+.++++.++.+. .+......++..+.+..+.+...+-++.+...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56666766666443221 113455666777666632 35556666777777777777777777777665
Q ss_pred CCCCCcccHHHHHHHHHh---cCChHHHHHHHHHHHHc------CC----ccCH-------HhHHHHHHHHHccCCHHHH
Q 020193 117 GFNPPVRGRDLLVQGLLN---AGYLESAKQMVNKMIKQ------GF----VLDL-------ETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~------~~----~~~~-------~~~~~l~~~~~~~~~~~~a 176 (329)
. +-+...|...+..... .-.++....+|.+..+. +. .+.. ..+..+...+.+.|..+.|
T Consensus 95 ~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 N-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred C-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 3 3345556655554443 22345555555443321 10 0001 1222233334556777777
Q ss_pred HHHHHHHHHcCC
Q 020193 177 VEMYYSVCKLGL 188 (329)
Q Consensus 177 ~~~~~~~~~~~~ 188 (329)
..+++.+.+.++
T Consensus 174 va~~Qa~lE~n~ 185 (321)
T PF08424_consen 174 VALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHc
Confidence 777777666543
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.49 E-value=39 Score=27.79 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhHHHHHHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR---RGQFDDAFCFFS 251 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~ 251 (329)
.-+.++++..+.++ .+.......+..+.+..+.+...+-++++...... +...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445555544432 34444555555555555555555555555554221 34444444443322 123444444444
Q ss_pred HHHHc------CC----CCChh-------hHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 020193 252 EMKIK------GH----PPNRP-------VYTMLITMCGRGGRFVEAANYLVEMTEMGL 293 (329)
Q Consensus 252 ~~~~~------~~----~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 293 (329)
+.... +. .+... .+..+..-+...|..+.|..+++.+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33321 10 00111 122222233467888888888877776554
No 372
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=76.78 E-value=34 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMS 114 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (329)
+..+...+..++...|+...+.++++.+.
T Consensus 131 ~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 131 DPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp SHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 44444455555555566666666666654
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.15 E-value=3.9 Score=28.13 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 276 GRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
|.-..|..+|+.|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444557777777777776665 56666544
No 374
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.92 E-value=25 Score=24.82 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCC-----CCCCcccHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCccCHHhHHHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKG-----FNPPVRGRDLLVQGLLNAGY-LESAKQMVNKMIKQGFVLDLETFNSL 163 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (329)
.+.++.-....+++.....+++.+.... -..+...|.+++++.....- ---+..+|+.+.+.+..++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4666666666667777777766663221 12456678888888765555 34456777777777777788888888
Q ss_pred HHHHHccCC
Q 020193 164 IETICKSGE 172 (329)
Q Consensus 164 ~~~~~~~~~ 172 (329)
+.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 887766533
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=75.58 E-value=21 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666666554
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.74 E-value=9.8 Score=22.18 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=10.0
Q ss_pred HHHHHhccCCHHHHHHHHHHH
Q 020193 268 LITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~ 288 (329)
++.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555554444
No 377
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.36 E-value=26 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=14.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccC
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLD 156 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 156 (329)
.+++.+...++.-.|.++++++.+.+...+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 344444444444555555555555443333
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.19 E-value=15 Score=21.43 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=8.2
Q ss_pred HHHHHHhcCchhHHHHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~ 113 (329)
+|.++...|++++|.++++.+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444333
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=73.97 E-value=26 Score=24.07 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 280 EAANYLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 280 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
.+.++|+.|...|+--. +..|......+...|++++|.+++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777776665433 55677777777778888888877765
No 380
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.26 E-value=11 Score=30.19 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTY 90 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (329)
.||..|....+.||+++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3457777777777777777777777777755333333
No 381
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=73.21 E-value=16 Score=21.64 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
|....++.++...++..-.+.++..+.+..+.|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3445555566666665556666666666665553 244455554444444
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.18 E-value=69 Score=28.65 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=59.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEA 211 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 211 (329)
+...|+...|.+.+.........-.......|.+...+.|-...|-.++.+..... ...+.++-.+..++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 33457777777777665544322233344455556666666666766666655543 24455666677777777778888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHH
Q 020193 212 FRLLHNLVEDGHKPFPSLYAPII 234 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~ 234 (329)
++.|++..+...+ +...-+.|.
T Consensus 696 ~~~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHH
Confidence 8888777665332 334334443
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.16 E-value=24 Score=23.34 Aligned_cols=15 Identities=13% Similarity=-0.048 Sum_probs=5.7
Q ss_pred ccCCHHHHHHHHHHH
Q 020193 169 KSGEVEFCVEMYYSV 183 (329)
Q Consensus 169 ~~~~~~~a~~~~~~~ 183 (329)
+.|--+++...+.++
T Consensus 81 klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 81 KLGLASALESRLTRL 95 (116)
T ss_dssp HCT-HHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHH
Confidence 344444444444433
No 384
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.15 E-value=24 Score=23.34 Aligned_cols=81 Identities=15% Similarity=0.063 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
.+..++|..+.+.+...+ .....+--.-+..+.+.|++++|+. . -.....||...|..| +-.+.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~ALl---~-~~~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEALL---L-PQCHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHHHH---H-HTTS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH---h-cccCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 344556666666655544 1122222222334455566666611 1 112234455444433 23355555555555
Q ss_pred HHHHHhCC
Q 020193 110 LQEMSDKG 117 (329)
Q Consensus 110 ~~~~~~~~ 117 (329)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 55554443
No 385
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.91 E-value=35 Score=25.14 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 34 DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-----------FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
++|+.-|++....+ |....++..+..+|...+. +++|.+.|+..... .|+..+|+.-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 34444555555554 4445677677777665432 55666666666654 789999998888763
Q ss_pred hhHHHHHHHHHHhCC
Q 020193 103 MREAQEFLQEMSDKG 117 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~ 117 (329)
+|-++..++.+.+
T Consensus 125 --kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 --KAPELHMEIHKQG 137 (186)
T ss_dssp --THHHHHHHHHHSS
T ss_pred --hhHHHHHHHHHHH
Confidence 4666777776665
No 386
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.65 E-value=11 Score=21.20 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=12.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh
Q 020193 268 LITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
+.-++.+.|++++|.+..+.+.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455566666666666655543
No 387
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.33 E-value=82 Score=29.16 Aligned_cols=151 Identities=9% Similarity=0.097 Sum_probs=88.2
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCc---cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhc
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQ---CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS 100 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (329)
++-+.+.+.+++|+.+-+..... +| -...+...|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 56677888899998887766543 33 3456778888888899999998888888754 455666666666666
Q ss_pred CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH-----------------HcCCccCHHhHHHH
Q 020193 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI-----------------KQGFVLDLETFNSL 163 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l 163 (329)
++......+ +....-..++..|..++..+.. .+...-.++..+-. +.... +...-..|
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 554432221 1111111344566666666555 22222111111100 00011 22333447
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 020193 164 IETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
+..|...+++..|++++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 7788888888888887766543
No 388
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.91 E-value=50 Score=26.49 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
..++..+...|++-++.+.+.++..+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~ 142 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLM 142 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 4455556666666666666555554444
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.89 E-value=48 Score=27.11 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPV---RGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
+.-+..+.|+..+|.+.++++.+.- |-. .....++.++....-+.++..++.+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334445566666666666654432 111 1122345555555545444444444433
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.84 E-value=4.7 Score=27.73 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=14.4
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
.|.-..|-.+|+.|.+.|-+|| .|+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 3444455555566655554443 3444443
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.58 E-value=15 Score=20.02 Aligned_cols=11 Identities=18% Similarity=0.395 Sum_probs=3.9
Q ss_pred HHHHHHHhCCC
Q 020193 283 NYLVEMTEMGL 293 (329)
Q Consensus 283 ~~~~~~~~~~~ 293 (329)
.++++|.+.|+
T Consensus 23 ~~l~~l~~~g~ 33 (48)
T PF11848_consen 23 PLLDRLQQAGF 33 (48)
T ss_pred HHHHHHHHcCc
Confidence 33333333333
No 392
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.77 E-value=21 Score=21.15 Aligned_cols=51 Identities=4% Similarity=0.020 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (329)
.|....++.++...++..-.++++..+.+..+.| ..+..+|---++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3455566777777777777777777777777766 45556665555555543
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.47 E-value=16 Score=19.91 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
|-.+++..++++|.+.|+..+...+..+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 3334444444444444444444443333
No 394
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.24 E-value=11 Score=17.75 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHhhhcCCCccHHHHHHHH
Q 020193 31 GLVDNAVEVFNKCTAFNCQQCVLLYNSLL 59 (329)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 59 (329)
|+.+.|..+|+++.... +.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34556666666665543 34455555444
No 395
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.92 E-value=13 Score=29.83 Aligned_cols=30 Identities=10% Similarity=0.230 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
|+.-|....+.||+++|++++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555566666666666666666655544
No 396
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.41 E-value=28 Score=22.18 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=29.2
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc-ChHHHHHHHHHHHhcCc
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-DKRTYAILVNAWCSSGK 102 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 102 (329)
|.|...-..+...+...|++++|++.+-.+.+..... +...-..++..+...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 5566666667777777777777777776666553222 33344445555544443
No 397
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.96 E-value=66 Score=29.23 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=49.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCCHHH------HHHHHHHHHhCCCCCChhhHHHH
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKL--GLCADVSTYKILIPAVSKAGMIDE------AFRLLHNLVEDGHKPFPSLYAPI 233 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 233 (329)
.++.+|...|++..+.++++.+... |-+.-...+|..++...+.|.++- |..+++.. .+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7888888899998888888888654 222334567777777788887542 33333332 344577778777
Q ss_pred HHHHHc
Q 020193 234 IKGMFR 239 (329)
Q Consensus 234 ~~~~~~ 239 (329)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766554
No 398
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.02 E-value=1.1e+02 Score=28.30 Aligned_cols=118 Identities=12% Similarity=0.051 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHH
Q 020193 205 AGMIDEAFRLLHNLVEDG-HKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 281 (329)
..+.+.|..++....... ..+. ..+...+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 345677777777764432 2111 112333333333332245566666554332 12444445455555577888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 282 ANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
...+..|-... .-...-..-+.+++...|+.++|...++....
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777765322 22334445566776677888888887776543
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=66.91 E-value=43 Score=27.07 Aligned_cols=71 Identities=11% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH----------hcCchhHH
Q 020193 37 VEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC----------SSGKMREA 106 (329)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 106 (329)
.++|+.+...++.|.-.++..+.-.+.+.=.+..++.+++.+... ..-|..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666666667777666666666666666667777777776642 222444444444 23666666
Q ss_pred HHHHHH
Q 020193 107 QEFLQE 112 (329)
Q Consensus 107 ~~~~~~ 112 (329)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 665544
No 400
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.84 E-value=50 Score=24.47 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHcCCCCch--h-----hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 173 VEFCVEMYYSVCKLGLCADV--S-----TYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
++.|+.+|+.+.+.-..|.. . .-...+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 78999999999876543421 1 2234456789999999999999998773
No 401
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.68 E-value=1e+02 Score=28.10 Aligned_cols=178 Identities=15% Similarity=0.134 Sum_probs=101.2
Q ss_pred Hhhhh-hCCCCCCHH--HHHHHHHHHH-ccCchhHHHHHHHHhhhcCCCccH-----HHHHHHHHHHHhcchHHHHHHHH
Q 020193 5 IELMK-PYNLSVSPQ--TLSLIIEEFG-KHGLVDNAVEVFNKCTAFNCQQCV-----LLYNSLLFALCEVKLFHGAYALI 75 (329)
Q Consensus 5 ~~~m~-~~g~~~~~~--~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~ 75 (329)
++... +..++|..+ ++-.+...+. ...+++.|...+++.....-.++. .....++..+.+.+... |...+
T Consensus 44 L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l 122 (608)
T PF10345_consen 44 LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNL 122 (608)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHH
Confidence 34444 334444333 4555666665 668899999999987543222221 12335566666666555 88888
Q ss_pred HHHHHcCCc----cChHHHHHH-HHHHHhcCchhHHHHHHHHHHhCC---CCCCcccHHHHHHHHH--hcCChHHHHHHH
Q 020193 76 RRMIRKGFV----PDKRTYAIL-VNAWCSSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLL--NAGYLESAKQMV 145 (329)
Q Consensus 76 ~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~ 145 (329)
++..+.--. +-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++.+.+
T Consensus 123 ~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l 202 (608)
T PF10345_consen 123 DKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELL 202 (608)
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 887654211 112223333 223333479999999998885432 2344444555555544 345567777777
Q ss_pred HHHHHcCC---------ccCHHhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 020193 146 NKMIKQGF---------VLDLETFNSLIETIC--KSGEVEFCVEMYYSV 183 (329)
Q Consensus 146 ~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 183 (329)
+++..... .|...+|..++..++ ..|+++.+...++++
T Consensus 203 ~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 203 QRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76643211 234556666666554 467766666665554
No 402
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.65 E-value=64 Score=25.64 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=125.8
Q ss_pred CCCccHHHHHHHHHHH-HhcchHHHHHHHHHHHHHcCCccCh---HHHHHHHHHHHhcCchhHHHHHHHHHHhC---CCC
Q 020193 47 NCQQCVLLYNSLLFAL-CEVKLFHGAYALIRRMIRKGFVPDK---RTYAILVNAWCSSGKMREAQEFLQEMSDK---GFN 119 (329)
Q Consensus 47 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 119 (329)
+-.||+..=|..-.+- .+...+++|+.-|++..+....... .....++....+.+++++....+.++... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665544332221 2345788999999988875322233 34456788889999999999988888532 111
Q ss_pred --CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCH----HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---
Q 020193 120 --PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ-GFVLDL----ETFNSLIETICKSGEVEFCVEMYYSVCKLGLC--- 189 (329)
Q Consensus 120 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 189 (329)
-+..+.|+++.......+.+-....++.-.+. .-..+. .|-..+...|...+++.+..+++.++..+-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23456777777777666666665555533221 000122 23356777788888888888888888654222
Q ss_pred -Cc-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHH-----HccCChhHHHH-HHHHHH
Q 020193 190 -AD-------VSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYAPIIKGM-----FRRGQFDDAFC-FFSEMK 254 (329)
Q Consensus 190 -~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~-~~~~~~ 254 (329)
.| ...|..=|..|....+-.....+|++.... .-.|.+.... +|+-| .+.|++++|.. +|+...
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 22 236677777888877777888888876543 3345554444 33333 45677777654 444443
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.25 E-value=1.1e+02 Score=28.05 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=105.5
Q ss_pred HHHHHHHhh-hcCCCccH--HHHHHHHHHHH-hcchHHHHHHHHHHHHHcCCccChH-----HHHHHHHHHHhcCchhHH
Q 020193 36 AVEVFNKCT-AFNCQQCV--LLYNSLLFALC-EVKLFHGAYALIRRMIRKGFVPDKR-----TYAILVNAWCSSGKMREA 106 (329)
Q Consensus 36 a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 106 (329)
|+..++.+. +..++|.. .++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555555 44444443 34555666666 5688999999999776443223222 2234566676766655 8
Q ss_pred HHHHHHHHhCC----CCCCcccHHHH-HHHHHhcCChHHHHHHHHHHHHcC---CccCHHhHHHHHHHHH--ccCCHHHH
Q 020193 107 QEFLQEMSDKG----FNPPVRGRDLL-VQGLLNAGYLESAKQMVNKMIKQG---FVLDLETFNSLIETIC--KSGEVEFC 176 (329)
Q Consensus 107 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a 176 (329)
...+++..+.- ..+-...|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888875542 11222233333 333334489999999998877642 2333344444444443 45656777
Q ss_pred HHHHHHHHHcCC---------CCchhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 020193 177 VEMYYSVCKLGL---------CADVSTYKILIPAVS--KAGMIDEAFRLLHNLV 219 (329)
Q Consensus 177 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 219 (329)
.+..+.+..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776633211 234566777776554 5677767766665543
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.11 E-value=39 Score=26.45 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----C-CccCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQ----G-FVLDLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
.+..-|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+--++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556667777777777777665321 2 1233445566666677777777666654444
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.92 E-value=62 Score=25.24 Aligned_cols=118 Identities=9% Similarity=-0.034 Sum_probs=64.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHccCChh
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCADV-STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL-YAPIIKGMFRRGQFD 244 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 244 (329)
|.....+..|+..|.+.+.. .|+. .-|+.=+.++.+..+++.+..=-.+..+ +.||... ...+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 44455677777766666553 3444 3455556666677777777665555554 3444332 233445556667777
Q ss_pred HHHHHHHHHHHc----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 245 DAFCFFSEMKIK----GHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 245 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
+|+..+.+..+. .+++-......|..+--..=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 887777776332 33344444555555433333334444444443
No 406
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.68 E-value=59 Score=29.54 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=54.3
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHH------HHHHHHHHHHHcCCccChHHHHH
Q 020193 21 SLIIEEFGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFH------GAYALIRRMIRKGFVPDKRTYAI 92 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 92 (329)
.+|+.+|...|++-.+.++++.....+ -+.-...+|..|+...+.|.++ .+.+++++.. +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 389999999999999999999987543 2334667888899999988765 3344444333 4457778887
Q ss_pred HHHHHHh
Q 020193 93 LVNAWCS 99 (329)
Q Consensus 93 l~~~~~~ 99 (329)
++.+...
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7765443
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.63 E-value=84 Score=26.64 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=34.5
Q ss_pred HHHHhcchHHHHHHHHHHHHHcCCccChH--HHHHHHHHHH--hcCchhHHHHHHHHHHhC
Q 020193 60 FALCEVKLFHGAYALIRRMIRKGFVPDKR--TYAILVNAWC--SSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 116 (329)
..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677888888888888776 444443 3344444443 344667777777776554
No 408
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=65.59 E-value=31 Score=23.00 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=11.5
Q ss_pred HHHHhcchHHHHHHHHHHHHHcC
Q 020193 60 FALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
+.+.++...++|+++++-|.+.|
T Consensus 69 D~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 69 DYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhC
Confidence 33344444555555555555554
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.55 E-value=1.3e+02 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTA 45 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 45 (329)
|..|+..|...|..++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 45555555566666666666655544
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=65.35 E-value=62 Score=26.23 Aligned_cols=70 Identities=16% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc----------cCCHHHH
Q 020193 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR----------GGRFVEA 281 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 281 (329)
.++++.+.+.++.|.-.++..+.-.+.+.=.+..++.+|+.+... ..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 568888888899999999888888888888899999999998864 3336777766652 4666666
Q ss_pred HHHHH
Q 020193 282 ANYLV 286 (329)
Q Consensus 282 ~~~~~ 286 (329)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 66554
No 411
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=63.89 E-value=34 Score=21.55 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
+...|..-++...... .+++ ++|+-....|+..|...|..++....-.=..+...++++.|...
T Consensus 9 ~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred hHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 4445554443322222 2233 78888888899999999999999888888888889999888654
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.86 E-value=38 Score=21.68 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=28.7
Q ss_pred HHccCchhHHHHHHHHh----hhcCCCcc----HHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 27 FGKHGLVDNAVEVFNKC----TAFNCQQC----VLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~----~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
..+.|++.+|.+-+.+. ...+.... ....-.+...+...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34677777775554443 33332221 12222344455566777777777776654
No 413
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.79 E-value=1.4e+02 Score=28.26 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=27.8
Q ss_pred hcCChHHHHHHHHHHHHc----CCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 134 NAGYLESAKQMVNKMIKQ----GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
..|++++|.++.+..... -..+....+..+..+..-.|++++|..+.....+
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 345666666665554432 1222344455555555566666666666555443
No 414
>PRK10941 hypothetical protein; Provisional
Probab=62.66 E-value=78 Score=25.27 Aligned_cols=77 Identities=12% Similarity=-0.013 Sum_probs=41.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHH
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG-LTPISRCFDLVTDGLK 308 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~ 308 (329)
+.+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..=++..++.. -.|+.......+..+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 334455666667777777666666542 2233334444445666666666666666665432 2344444444444443
No 415
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.59 E-value=45 Score=26.12 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=23.6
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhCCchhHHHHH
Q 020193 268 LITMCGRGGRFVEAANYLVEMTE----MGL-TPISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33444455555555555554431 111 12233444455555555555554444
No 416
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.56 E-value=81 Score=25.45 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 138 LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
..+|+++|.-+.++.- ...+-..++..+-...+..+|...+..
T Consensus 149 s~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 149 SRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHH
Confidence 4578888887777632 233444556666666666666655544
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.79 E-value=52 Score=22.99 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 224 KPFPSLYAPIIKGMFRRGQ---FDDAFCFFSEMKIKGHPP-NRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 224 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
.++..+--.+..++.+..+ ..+.+.+++++.+...+. .......|.-++.+.++++++.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555665667777776655 455677888887632222 2234445566788899999999999888764
No 418
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=61.56 E-value=61 Score=23.66 Aligned_cols=63 Identities=8% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 020193 217 NLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280 (329)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 280 (329)
.+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+.+.|-..+
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 34556777665533 4556666667788899999999988877777777677777888776544
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.47 E-value=4.7 Score=32.70 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=51.5
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ 143 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 143 (329)
..|.++.|++.|...+..+ ++....|..-.+.+.+.+++..|++=++.....+ +-+...|-.--.+....|++.+|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHH
Confidence 4556677777766666553 2344455555566666666666666666555543 1122233333444445667777777
Q ss_pred HHHHHHHcCCccCH
Q 020193 144 MVNKMIKQGFVLDL 157 (329)
Q Consensus 144 ~~~~~~~~~~~~~~ 157 (329)
.+....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77766666554433
No 420
>PRK10941 hypothetical protein; Provisional
Probab=61.46 E-value=82 Score=25.14 Aligned_cols=77 Identities=13% Similarity=-0.028 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC-CCCCcccHHHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG-FNPPVRGRDLLVQGL 132 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 132 (329)
.+.+-.+|.+.++++.|+...+.+..-.+. |..-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 455666777888888888888888775422 44445555556778888888887777776543 223333334444433
No 421
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=61.15 E-value=81 Score=24.98 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=40.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC-CCC-----ChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 267 MLITMCGRGGRFVEAANYLVEMTEMG-LTP-----ISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
.++.-|.+.|+.+.|-.++--+.... ... +...-..++......|+|+.+.++.+.+..+++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 45666667777777776665554322 122 334455667777788999999998888877663
No 422
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=61.11 E-value=1.2e+02 Score=27.05 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=75.7
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 156 DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235 (329)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (329)
+..+|...+..-...|+.+.+.-+|++..-. +..-...|-..+.-....|+.+.|..++....+-.++..+.+.-.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777777788888888888876531 111233454555555556899888888877666544323332222222
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCCHHHHHH
Q 020193 236 GMFRRGQFDDAFCFFSEMKIKGHPPNRPV-YTMLITMCGRGGRFVEAAN 283 (329)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~ 283 (329)
..-..|+++.|..+++.+.+. . |+..- -..-+....+.|..+.+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 234567999999999999877 3 44322 1222334456777777663
No 423
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=94 Score=25.64 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHH--HHHHHHHccCChhHHHHHHHHHHH-----cCCCCChh
Q 020193 197 ILIPAVSKAGMIDEAFRLLHNLVED---GHKPFPSLYA--PIIKGMFRRGQFDDAFCFFSEMKI-----KGHPPNRP 263 (329)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 263 (329)
.++....+.++.++|.++++++.+. --.|+...|. .+...+...|+..++.+++++..+ .+++|+..
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 3444455566888888888887654 2234554443 344556677888888888877776 46666443
No 424
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.48 E-value=80 Score=24.67 Aligned_cols=117 Identities=15% Similarity=0.079 Sum_probs=70.1
Q ss_pred HHccCchhHHHHHHHHhhhcCCCccH-HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH-HHHHHHHHHhcCchh
Q 020193 27 FGKHGLVDNAVEVFNKCTAFNCQQCV-LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT-YAILVNAWCSSGKMR 104 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 104 (329)
|.....++.|+..|.+.+..+ |+. .-|+.-+-++.+.++++.+..=-.+.++- .||..- ...+-........++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 444556778888777776655 444 56677777888888888777666665543 455432 233445566777888
Q ss_pred HHHHHHHHHHhC----CCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 020193 105 EAQEFLQEMSDK----GFNPPVRGRDLLVQGLLNAGYLESAKQMVNK 147 (329)
Q Consensus 105 ~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 147 (329)
+|+..+.+..+. .+++.......|..+--+.-...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 888888777433 2344444555555544444444444444443
No 425
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.22 E-value=1.1e+02 Score=26.03 Aligned_cols=58 Identities=9% Similarity=-0.015 Sum_probs=42.7
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHH--HHHHHHHHHHh--cchHHHHHHHHHHHHHc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL--LYNSLLFALCE--VKLFHGAYALIRRMIRK 81 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 81 (329)
.+..+.+.+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344556889999999999999987 566655 45555555543 56678999999887754
No 426
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.85 E-value=53 Score=28.31 Aligned_cols=100 Identities=14% Similarity=0.008 Sum_probs=47.5
Q ss_pred HHHHhcchHHHHHHHHHHHHHcCCccChH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 020193 60 FALCEVKLFHGAYALIRRMIRKGFVPDKR-TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (329)
......+.++.|..++.+..+. .||-. .|..=..++.+.+++..|+.=....++.. +-....|..-..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 3444556666666666666654 33322 22333355666666666665555555443 11122222233334444445
Q ss_pred HHHHHHHHHHHHcCCccCHHhHHHHH
Q 020193 139 ESAKQMVNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 164 (329)
.+|+..|+..... .|+..-....+
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHH
Confidence 5555555544433 34444333333
No 427
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=59.50 E-value=79 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=11.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHH
Q 020193 93 LVNAWCSSGKMREAQEFLQEMS 114 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~ 114 (329)
-|......|+.+.|+.....+.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhC
Confidence 3444455566666655555553
No 428
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.28 E-value=97 Score=25.27 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHcCC----ccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 020193 138 LESAKQMVNKMIKQGF----VLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFR 213 (329)
Q Consensus 138 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (329)
.+.|.+.|++....+. ..++.....++....+.|+.+....+++..... ++......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667777777776422 345556666677777777766655555555442 456677788888888888888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCCh--hHHHHHHH----HHHHcCCCCChhhHHHHHHHHhc
Q 020193 214 LLHNLVEDGHKPFPSLYAPIIKGMFRRGQF--DDAFCFFS----EMKIKGHPPNRPVYTMLITMCGR 274 (329)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 274 (329)
+++.+...+..++... ..++.++...+.. +.+..++. .+.+. ...+......++..+..
T Consensus 223 ~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAG 287 (324)
T ss_dssp HHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCT
T ss_pred HHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhc
Confidence 8888887542333443 3344445433333 55555543 33322 22233355566665444
No 429
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=58.41 E-value=1.9e+02 Score=28.23 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhcC--ChHHHHHHHHHHHHc
Q 020193 124 GRDLLVQGLLNAG--YLESAKQMVNKMIKQ 151 (329)
Q Consensus 124 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 151 (329)
-...++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3456777777777 777777777777765
No 430
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.26 E-value=1.3e+02 Score=26.42 Aligned_cols=97 Identities=10% Similarity=0.109 Sum_probs=68.4
Q ss_pred CChhhH-HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHH-hCCCCCChhhH
Q 020193 225 PFPSLY-APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCG--RGGRFVEAANYLVEMT-EMGLTPISRCF 300 (329)
Q Consensus 225 ~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~-~~~~~p~~~~~ 300 (329)
|+..++ +.++..+.+.|-.++|...+..+... .+|+...|..+++.=. ..-+...+..+++.|. ..| .++..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 344333 45667777888889999999998876 5667778887776422 1223677788888877 566 577788
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHh
Q 020193 301 DLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
...+.-=...|..+.+-.++..+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHH
Confidence 888777778888888777765544
No 431
>PHA03100 ankyrin repeat protein; Provisional
Probab=58.17 E-value=1.3e+02 Score=26.32 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=6.8
Q ss_pred HHHHccCchhHHHHHH
Q 020193 25 EEFGKHGLVDNAVEVF 40 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~ 40 (329)
...++.|+.+-+..++
T Consensus 40 ~~A~~~~~~~ivk~Ll 55 (480)
T PHA03100 40 YLAKEARNIDVVKILL 55 (480)
T ss_pred hhhhccCCHHHHHHHH
Confidence 3334445544433333
No 432
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.62 E-value=43 Score=20.72 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=12.8
Q ss_pred HHHHHccCchhHHHHHHHHhhhcC
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFN 47 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~ 47 (329)
++.+.++.--++|+++++.+.++|
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555555555555555555
No 433
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=57.62 E-value=62 Score=22.49 Aligned_cols=98 Identities=8% Similarity=-0.014 Sum_probs=0.0
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (329)
..+...+.|-...-..+..++--+...|+++.|+++.+.+.++| .+.+..|+.=.-.++- ++..+......+.|.
T Consensus 35 ~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~-l~~P~~f~R~~~t~va----eev~~~a~~~~~~g~ 109 (132)
T PF05944_consen 35 WVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHG-LPMPDRFKRTLPTFVA----EEVADWALRAAKAGQ 109 (132)
T ss_pred HHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcC-CCccccccCcchHHHH----HHHHHHHHHHHHcCC
Q ss_pred ccChHHHHHHHHHHHhcCchhHH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a 106 (329)
..+...+......-......+++
T Consensus 110 ~~~~~~l~~~~~l~~~~dmpd~v 132 (132)
T PF05944_consen 110 SFEPYFLSRVFELTADQDMPDQV 132 (132)
T ss_pred CCChHHHHHHHHHHccCCCCCCC
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.75 E-value=1.2e+02 Score=25.72 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=38.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHc--CCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
.+.-+...|...|+++.|++.+.+..+- ........|..++..-...|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4556677777888888888888775542 1111234455566666667777766666655543
No 435
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.71 E-value=2.2e+02 Score=28.46 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHHccCCHHHHHHHHHHH-------HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-
Q 020193 156 DLETFNSLIETICKSGEVEFCVEMYYSV-------CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED-----G- 222 (329)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~- 222 (329)
....|..+...+.+.++.++|...-... ......-+...|..+...+...+....|...+.+.... |
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 4566777888888889988887765442 12222223455666666666777777777777776543 1
Q ss_pred -CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC--CCChhhHHHHHHHHhccCCHHHHHHHH
Q 020193 223 -HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----GH--PPNRPVYTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 223 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (329)
.+|...+++.+-..+...++++.|.++.+.+... |. -++..++..+.+.+...+++..|....
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 2333444455555555667888888888877654 11 234556777777777777777665543
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=56.54 E-value=1e+02 Score=24.70 Aligned_cols=25 Identities=8% Similarity=0.014 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHH
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPVYT 266 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (329)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666677777666665554444444
No 437
>PRK09462 fur ferric uptake regulator; Provisional
Probab=56.48 E-value=69 Score=22.68 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHH
Q 020193 216 HNLVEDGHKPFPSLYAPIIKGMFRR-GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFV 279 (329)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 279 (329)
+.+.+.|.+++..- ..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-..
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34556677765543 3355555554 467889999999988876667777666667777777543
No 438
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.15 E-value=1.2e+02 Score=25.46 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHh
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKC 43 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 43 (329)
|-.+.++-.+-..+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445566666666677777776666666554
No 439
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.04 E-value=33 Score=22.92 Aligned_cols=44 Identities=20% Similarity=0.060 Sum_probs=23.5
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
+..+...+..-.|.++++.+.+.+..++..|....++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444444566666666665555555555555555555553
No 440
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.92 E-value=51 Score=28.41 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.-++.+.+.+.++.|+.++.++++.+ +..+..|..-..++.+.+++..|+.=+..+.+..+. -...|..=..++.+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 34556677889999999999999876 445555555558888999999998877777765411 1223333344555666
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
.+.+|...|+.... +.|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 67777777777665 357666555555444
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.87 E-value=64 Score=22.16 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 281 AANYLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 281 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
...+|..|..+|+-.. +..|......+...|++.+|.+++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4556777776665433 44556666667777777777777653
No 442
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.86 E-value=52 Score=21.04 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHccCChhHHHHHHHHHHH----cCCCCC--hhhH--HHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 237 MFRRGQFDDAFCFFSEMKI----KGHPPN--RPVY--TMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
..+.|++..|.+.+.+..+ .+..+. ...+ -.+.......|++++|...+++.++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4567788887655544433 222221 1112 223344556788888888888776543
No 443
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=55.60 E-value=40 Score=19.68 Aligned_cols=9 Identities=22% Similarity=0.419 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 020193 68 FHGAYALIR 76 (329)
Q Consensus 68 ~~~a~~~~~ 76 (329)
+=+|.++++
T Consensus 15 f~EaHEvlE 23 (62)
T PF03745_consen 15 FFEAHEVLE 23 (62)
T ss_dssp HHHHHHHHH
T ss_pred HHHhHHHHH
Confidence 333333333
No 444
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.19 E-value=1.9e+02 Score=27.43 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=32.5
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCcc--HHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQC--VLLYNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
=+.|.+.|+++.|+++-..- |+ ..++..-...|.+.+++..|-++|.++.
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34577788888887764332 22 1233444566777888888888887763
No 445
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=55.09 E-value=1.1e+02 Score=24.71 Aligned_cols=109 Identities=10% Similarity=0.179 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
++....+.++.....+.+..+.. ...-...++.+...|++..|++++.+..+.- -...-|+.+=..- .+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~---~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLS---SQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHh---HH
Confidence 44445555555555555555442 2233344555666777777777777665421 0111111111110 11
Q ss_pred HHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHccCChhHHH
Q 020193 208 IDEAFRLLHNLVED-----GHKPFPSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 208 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (329)
+++-....+.+.+. -...|+..|..+..+|.-.|+...+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 22222222222111 01346777888888887777665544
No 446
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=55.03 E-value=2.1e+02 Score=27.86 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 020193 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG--EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRL 214 (329)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 214 (329)
+....-+.+.+..+.. .-.......++.+|.+.+ ++++|+....++.+. +...-...++..+- +-.+.++
T Consensus 793 KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~alkyl~f---LvDvn~L 864 (928)
T PF04762_consen 793 KVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEALKYLCF---LVDVNKL 864 (928)
T ss_pred HHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHHHhHhee---eccHHHH
Confidence 3444444444333321 223445567788888887 888899888888765 11222222222111 1122233
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 215 LHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
|+..... -|.. ..++-+-..+.|+.+=+-+++++.+. +|+..-|. |+ .+.+++++|++-+.++
T Consensus 865 y~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l--~~~~rry~--ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 865 YDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKL--PPLYRRYK--ID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhC--Chhheeee--Hh--hhhCCHHHHHHHHHhh
Confidence 3332211 0111 11223333445666666666666653 33322111 22 2467888888776543
No 447
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=54.96 E-value=1e+02 Score=24.11 Aligned_cols=135 Identities=16% Similarity=0.236 Sum_probs=73.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
-+..|...-++.-|-...+++.+- ..+- ..+--|.+..+..-..++.+-....++.-+.....+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-----IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-----IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-----HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 344555555555555544444421 1111 12223444444444444444444444544444444443 345788
Q ss_pred HHHHHHHHHHHHhC-C-----------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 020193 208 IDEAFRLLHNLVED-G-----------HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272 (329)
Q Consensus 208 ~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (329)
..+|...++.-... | -.|.+.....++..|. .+++++|.+++.++-+.|..|.. ..+.+.+.+
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 88887777664432 1 1456666666666544 56789999999998888887643 344455544
No 448
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.71 E-value=1.4e+02 Score=25.58 Aligned_cols=60 Identities=10% Similarity=-0.010 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCccCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQ--GFVLDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
.-.|++...-.|++....+.++.+... |..|...+-..+.-+|.-.+++.+|.+.|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344677777788877777777776654 333332222345566777788888888887654
No 449
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.53 E-value=40 Score=22.52 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 020193 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280 (329)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 280 (329)
.++..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-..+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 3556666667777888899888887766777776667777777775543
No 450
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.08 E-value=1.2e+02 Score=24.89 Aligned_cols=97 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHH----cCCccCHHhHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCc----hh
Q 020193 123 RGRDLLVQGLLNAGYLESAKQMVNKMIK----QGFVLDLETFNSLIET-ICKSGEVEFCVEMYYSVCKLGLCAD----VS 193 (329)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 193 (329)
..+......|++.|+.+.|++.+.+..+ .|...|...+.+-+.. |....-..+-++..+.+.+.|...+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455667788888998888887776544 3666666655544332 3333334455555555555554332 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
+|..+- |...+++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444443 33456788888888776543
No 451
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.89 E-value=1.7e+02 Score=26.09 Aligned_cols=30 Identities=7% Similarity=0.104 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (329)
....++.++.. ++.+.+..+++.+...|..
T Consensus 248 ~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~ 277 (509)
T PRK14958 248 LLFDILEALAA-KAGDRLLGCVTRLVEQGVD 277 (509)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Confidence 33334444332 5555555666666555543
No 452
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.57 E-value=2e+02 Score=26.89 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=18.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 265 YTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 265 ~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
-..|+..|...+++..|.+.+-...
T Consensus 508 ~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 508 LEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHHccChHHHHHHHHhcc
Confidence 3447788888888888888876654
No 453
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=52.35 E-value=1.2e+02 Score=24.28 Aligned_cols=85 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC---------
Q 020193 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFR----RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG--------- 276 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 276 (329)
.|...+.++...+ +......+...|.. ..+.++|..+|....+.|. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhc
Confidence 5566666655554 22333333333322 3356667777776666653 22222222 222222
Q ss_pred ------CHHHHHHHHHHHHhCCCCCChhhHH
Q 020193 277 ------RFVEAANYLVEMTEMGLTPISRCFD 301 (329)
Q Consensus 277 ------~~~~a~~~~~~~~~~~~~p~~~~~~ 301 (329)
+...|...+......+.........
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6677777777777666554444444
No 454
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.94 E-value=81 Score=22.12 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHhcC---chhHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 86 DKRTYAILVNAWCSSG---KMREAQEFLQEMSDKGFN-PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
+..+--.+.-++.++. +..+.+.+++.+.+...+ .......-|.-++.+.++++.++++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4444444445555544 345556666666652211 12223334555666777777777777766665
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=51.63 E-value=32 Score=17.40 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=10.0
Q ss_pred HHHHHHHhCCchhHHHHH
Q 020193 302 LVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 302 ~l~~~~~~~g~~~~a~~~ 319 (329)
.+.-.+-..|++++|.++
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445566666666666
No 456
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.59 E-value=34 Score=23.11 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=23.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444555555566666666666655555555555555555554
No 457
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.58 E-value=70 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=18.7
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777776665
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.29 E-value=12 Score=30.48 Aligned_cols=93 Identities=13% Similarity=-0.011 Sum_probs=62.1
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (329)
...|.++.|++.+...+..+ ++....|..-.+++.+.+++..|++=++...+.+.. +..-|-.--.+-...|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35677888888888777765 555666666777888888888888888777765322 2223333333445578888888
Q ss_pred HHHHHHHHcCCCCch
Q 020193 178 EMYYSVCKLGLCADV 192 (329)
Q Consensus 178 ~~~~~~~~~~~~~~~ 192 (329)
..+....+.+..+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 888887776654443
No 459
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=50.64 E-value=36 Score=22.99 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=13.7
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCChhh
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 264 (329)
++..+...+.+-.|.++++.+.+.+...+..|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~T 44 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLAT 44 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHH
Confidence 33444444444455555555554444444433
No 460
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=50.53 E-value=56 Score=19.84 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=26.2
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (329)
..=+.+.|..++..+.... +.++..||++...+.++
T Consensus 9 emlDtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 9 EMLDTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 3345677888888887654 67788999888776654
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.51 E-value=1.2e+02 Score=23.66 Aligned_cols=163 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc--
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL-LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-- 169 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 169 (329)
+++.+-+.++++++..++.++...+...+..-.+.+-.+| ...|....+.+++..+.+....-.......++.-|.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH-----------------HHHHHHHHHHHhC---CCCCChhh
Q 020193 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI-----------------DEAFRLLHNLVED---GHKPFPSL 229 (329)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~a~~~~~~~~~~---~~~~~~~~ 229 (329)
..++..--.-+-.+....+.|...+-...+..+--.|++ +.|.+.|+...+. .++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHH-----ccCChhHHHHHHHHHHH
Q 020193 230 YAPIIKGMF-----RRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 230 ~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 255 (329)
+..++--|+ ..|+.++|.++.+....
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 462
>PRK09857 putative transposase; Provisional
Probab=50.46 E-value=1.4e+02 Score=24.30 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (329)
..+..++......++.++..++++.+.+. .+......-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33556666666777777777777777665 233333444566667777777788888899988886543
No 463
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.40 E-value=1.4e+02 Score=24.25 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=66.3
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 56 NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
-.++....+.++.....+.+..+.. ...-...++.+...|++..|++++.+..+.- -+...++.+=..-.+.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhHHH
Confidence 3455566666666666666666543 2334556777778999999999888775531 1122233332222222
Q ss_pred CCh-HHH----HHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 136 GYL-ESA----KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 136 ~~~-~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
.+. +.. ...|..+.. ..|+..|..+..+|.-.|+...+.+-+..
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 211 111 122223322 34888999999999999987766544443
No 464
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.48 E-value=1.6e+02 Score=24.80 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHH
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (329)
-..++..+...+...|+.+.|.+++++.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666777777888877777766655
No 465
>PRK09857 putative transposase; Provisional
Probab=49.33 E-value=1.4e+02 Score=24.19 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=28.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA 190 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 190 (329)
.+++.....++.++..++++.+.+. .+.......++..-+.+.|.-+++.++..+|...|..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3333334444444444444444433 11122223334444444444455566666666665543
No 466
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.20 E-value=1.4e+02 Score=24.10 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH-------HHHHHHHhcCchhHHHHHHH
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA-------ILVNAWCSSGKMREAQEFLQ 111 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~ 111 (329)
.+.+-..+.+++++|+..|.++...|...|..+.+ .+...|...|+.....+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34556677888999999999988888777775543 45667777777665554443
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=1.4e+02 Score=24.11 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 158 ETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
..+..+...|++.++.+.+.++..+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 44555555555555555555554443
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.98 E-value=1.1e+02 Score=23.01 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=33.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 229 LYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV-YTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 229 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
..+.+++.+.-.|+++.|-++|.-+.... ..|... |..=+..+.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 45667777888888888888888777652 334433 2222334444444333334444443
No 469
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.70 E-value=1.9e+02 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR 123 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 123 (329)
...++.+. +.++.+.|..++..+...|..|...
T Consensus 247 i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 247 VRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 33444433 4567777777777777766555433
No 470
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.41 E-value=1.5e+02 Score=24.20 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=11.7
Q ss_pred hhHHHHHHHHhccCCHHHH
Q 020193 263 PVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a 281 (329)
.+|..|+.+++..|+.+-.
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 4566667777766665543
No 471
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.10 E-value=1.5e+02 Score=24.18 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHccCChhHHH
Q 020193 227 PSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~ 247 (329)
..+|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777888888888766543
No 472
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.08 E-value=2.1e+02 Score=25.77 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhh-------hcCC-------------CccHHHHHHH---HHHHHhcchHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCT-------AFNC-------------QQCVLLYNSL---LFALCEVKLFHG 70 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~-------------~~~~~~~~~l---~~~~~~~~~~~~ 70 (329)
|..+.+.-.+...+..+|+.+.|..+.++.. ...+ +-|...|-+| |..+.+.|.+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 4455666677788888998887766665542 2221 2234444333 455667899999
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHH-hcCchhHHHHHHHHHHhCC---CCCCcccHHHHHHHHHhcCC---hHHHHH
Q 020193 71 AYALIRRMIRKGFVPDKRTYAILVNAWC-SSGKMREAQEFLQEMSDKG---FNPPVRGRDLLVQGLLNAGY---LESAKQ 143 (329)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~---~~~a~~ 143 (329)
|+++..-+.+....-|+.....+|+.|+ +..+++=.+++++.....+ .-||..--..+...|.+... -..|..
T Consensus 361 A~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~ 440 (665)
T KOG2422|consen 361 ALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALN 440 (665)
T ss_pred HHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHH
Confidence 9999988888765557777777887776 4556777777777664433 23443333345555555544 345666
Q ss_pred HHHHHHHc
Q 020193 144 MVNKMIKQ 151 (329)
Q Consensus 144 ~~~~~~~~ 151 (329)
.+.++...
T Consensus 441 ~l~qAl~~ 448 (665)
T KOG2422|consen 441 ALLQALKH 448 (665)
T ss_pred HHHHHHHh
Confidence 66655544
No 473
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.06 E-value=1.9e+02 Score=25.16 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
..|+.-|...|+..+|.++++++--- .-.....+..++.+.-+.|+-...+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44556666667777776666554211 11234456666666666666666666665554433
No 474
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.08 E-value=4.1e+02 Score=28.87 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..+|....+....+|+++.|...+-.+.+.+ . +..+--..+.....|+...|+.++++-.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467777777778899998887776666554 2 244555667777889999999998887754
No 475
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=46.87 E-value=1.2e+02 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=15.9
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhc
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAF 46 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 46 (329)
.+.++..+...|+++.|-++|.-+.+.
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 455555566666666666666665543
No 476
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.67 E-value=1.7e+02 Score=24.12 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCCh----h
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPFPSLYAPIIKG-MFRRGQFDDAFCFFSEMKIKGHPPNR----P 263 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 263 (329)
..+......|++.|+.+.|.+.++...+. |.+.|...+..-+.. |....-..+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555566677777777777666654432 444444433222211 22222223333344444444443322 2
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
+|..+- |....++.+|-.+|-+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 333222 223456666666665544
No 477
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.24 E-value=2.2e+02 Score=25.31 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=14.1
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCC
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGF 118 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 118 (329)
.+++++ ..++.+.|..+++.+...|.
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~ 272 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGF 272 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCC
Confidence 344443 33566666666666666553
No 478
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.49 E-value=2e+02 Score=24.62 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc--C----Cc-cCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 126 DLLVQGLLNAGYLESAKQMVNKMIKQ--G----FV-LDLETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
..|++.++-.||+..|+++++.+.-. + +. -...++.-+.-+|...+++.+|.+.|..+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888889999999998865321 1 11 134466677778888899999999988764
No 479
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.69 E-value=90 Score=25.47 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHH-HHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNS-LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
.+-|+..|...+....+.+.+.+...+|.++.... |.|+..|-. .-.-+...++++.+..+|..-.+.+.. ++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Confidence 45577788888887778888888888888888776 777777754 334455677888888888877765432 334443
No 480
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=43.37 E-value=3.6e+02 Score=27.10 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=99.3
Q ss_pred HHccCCHHHHHH------HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCChhhHHHH
Q 020193 167 ICKSGEVEFCVE------MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-------EDGHKPFPSLYAPI 233 (329)
Q Consensus 167 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 233 (329)
....|.+.++.+ ++......--++....|..+...+-+.++.++|...-.... ..+..-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 44432222122445678888888889999999888765432 11222234456666
Q ss_pred HHHHHccCChhHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-----CC--CCChhh
Q 020193 234 IKGMFRRGQFDDAFCFFSEMKIK-----G--HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM-----GL--TPISRC 299 (329)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~p~~~~ 299 (329)
.......++...|...+.+.+.. | .+|...+++.+-..+...++++.|.++++.+... |. -++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66667777888888887776643 1 2444455555555555568899999998887642 21 134667
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHH
Q 020193 300 FDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
+..+.+.+...+++..|....+..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhH
Confidence 888888888888888877665543
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=43.37 E-value=86 Score=19.99 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
.+.+++.++++.+...|. .+|..+..++...+.
T Consensus 48 t~~~k~~~Lld~L~~RG~----~AF~~F~~aL~~~~~ 80 (90)
T cd08332 48 TSFSQNVALLNLLPKRGP----RAFSAFCEALRETSQ 80 (90)
T ss_pred CcHHHHHHHHHHHHHhCh----hHHHHHHHHHHhcCh
Confidence 455667777777666643 356666666655443
No 482
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=42.65 E-value=2.5e+02 Score=25.08 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=9.8
Q ss_pred CchhHHHHHHHHHHhCCC
Q 020193 101 GKMREAQEFLQEMSDKGF 118 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~ 118 (329)
|+...|+.+++++...|.
T Consensus 271 ~d~~~Al~~l~~L~~~g~ 288 (507)
T PRK06645 271 RETEKAINLINKLYGSSV 288 (507)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 555555555555555553
No 483
>PRK13342 recombination factor protein RarA; Reviewed
Probab=40.95 E-value=2.4e+02 Score=24.32 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-----hhHHHHHHHHHHHcCCCCChhh
Q 020193 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ-----FDDAFCFFSEMKIKGHPPNRPV 264 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 264 (329)
.++.+.|..++..|.+.|..|....-..++.++...|. ..-|...++.....|.+--...
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~ 307 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIA 307 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 47788888888888888877665544444455444442 2234444555555565543333
No 484
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=40.70 E-value=2.4e+02 Score=24.39 Aligned_cols=197 Identities=12% Similarity=0.110 Sum_probs=97.5
Q ss_pred HHHhhhcCCCcc-HHHHHHHHHHHHhcchHHHHHHHHHHHHHcC--CccChHHHHHHHHHHHhcCchhH-----HHHHHH
Q 020193 40 FNKCTAFNCQQC-VLLYNSLLFALCEVKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMRE-----AQEFLQ 111 (329)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-----a~~~~~ 111 (329)
|..+..-..+|| ...|+.+...=.++.-.+...++.+.|.... -.|-..-..++|..|++.++.+- -+.+++
T Consensus 42 W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~ 121 (669)
T KOG3636|consen 42 WMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLE 121 (669)
T ss_pred HHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHH
Confidence 444433223444 3456655554444444455666666654321 12223345566667776665332 233444
Q ss_pred HHHhCCCCCCcccHHHHH---HHHH-----hcCChHHHHHHH---------HHHHHcCCccCHHhHHHHHHHHHccCCHH
Q 020193 112 EMSDKGFNPPVRGRDLLV---QGLL-----NAGYLESAKQMV---------NKMIKQGFVLDLETFNSLIETICKSGEVE 174 (329)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~---~~~~-----~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (329)
-+....+ |...+||..- .-|. ..|++=...+++ ..+....+.||..+.+.+...++..-..+
T Consensus 122 pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Ste 200 (669)
T KOG3636|consen 122 PLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTE 200 (669)
T ss_pred HHHHhcC-CcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHH
Confidence 4443332 3333444322 2221 122222222222 12233457788888888877777777777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPA--------VSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMF 238 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 238 (329)
-...+|+-..+.+- |-...+.+++-. -.+....+++.++++.|...--.-|..-+..|...|+
T Consensus 201 v~~a~WdlY~qqaD-PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 201 VCHALWDLYIQQAD-PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHHHHHHHHhcCC-ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 77778877776654 333333333221 1234556778888877764422224445555655554
No 485
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.49 E-value=1e+02 Score=20.13 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
.+.+++....+....+.....|.-.|.+.|+.+.|.+-|+.-+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3344444444332223333344445555666666665555433
No 486
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=40.21 E-value=1.7e+02 Score=22.44 Aligned_cols=104 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHccCC-------hhHHHHHHHHHHHcCCCCCh-----h
Q 020193 202 VSKAGMIDEAFRLLHNLVED----GHKPF--PSLYAPIIKGMFRRGQ-------FDDAFCFFSEMKIKGHPPNR-----P 263 (329)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-----~ 263 (329)
+.....+++|.+.|.-+.-. +.+|. ...+..+...|...|+ ...|.+.|.+..+..-.|.. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTD 305 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 305 (329)
..-.+.....+.|+.++|.+.|.++...+-.+.......+.+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
No 487
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.38 E-value=2.5e+02 Score=24.17 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=11.9
Q ss_pred CChHHHHHHHHHHHHcCCccC
Q 020193 136 GYLESAKQMVNKMIKQGFVLD 156 (329)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~ 156 (329)
.+.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455556666666665555444
No 488
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.36 E-value=3.4e+02 Score=25.65 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=0.0
Q ss_pred ChHHHhhhhh--------CCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc--------------------------
Q 020193 1 MWKTIELMKP--------YNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-------------------------- 46 (329)
Q Consensus 1 ~~~~~~~m~~--------~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------- 46 (329)
+.+++..... .++..+......++... .|+..+++.+++.+...
T Consensus 173 i~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ 250 (725)
T PRK13341 173 LHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVL 250 (725)
T ss_pred HHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhh
Q ss_pred ----CCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC-----chhHHHHHHHHHHhCC
Q 020193 47 ----NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-----KMREAQEFLQEMSDKG 117 (329)
Q Consensus 47 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~ 117 (329)
| .+.......+++.+.. ++++.|+.++.+|.+.|..|....-..++.+.-.-| ...-|...++.....|
T Consensus 251 ydk~g-d~hyd~Isa~~ksirg-sD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g 328 (725)
T PRK13341 251 YDKEG-DAHFDTISAFIKSLRG-SDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVG 328 (725)
T ss_pred cccCC-CCCHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhC
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 118 FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
++--........-.++..-+-..+ ..+++..+
T Consensus 329 ~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 329 LPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred CcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
No 489
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=39.35 E-value=9.9 Score=33.72 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHHh
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKG--MFRRGQFDDAFCFFSEMKIKGHPPNR--PVYTMLITMCG 273 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 273 (329)
.+.++...|++..|..++..+......+.......++.+ ....|+++.|...+.......+++.. ..+.....++.
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~~ 109 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAYE 109 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHHH
Confidence 345666667777777777766644444444444444443 33456666676666543322222222 12222333444
Q ss_pred ccCCHHHHHHHH
Q 020193 274 RGGRFVEAANYL 285 (329)
Q Consensus 274 ~~~~~~~a~~~~ 285 (329)
..|++-+|.+.+
T Consensus 110 ~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 110 QQGDPLAAARER 121 (536)
T ss_dssp ------------
T ss_pred hcCCHHHHHHHH
Confidence 555555544443
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.96 E-value=2.8e+02 Score=24.57 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (329)
+...+..++.+....+....++.+++.+.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 445556666665555555677788888877775543
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=38.83 E-value=2.1e+02 Score=23.25 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHHhCCC----CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHH
Q 020193 103 MREAQEFLQEMSDKGF----NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVE 178 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 178 (329)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... ++...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5667788888877522 334555566667777777766655555555543 367778889999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCC--HHHHHHHHHH
Q 020193 179 MYYSVCKLGLCADVSTYKILIPAVSKAGM--IDEAFRLLHN 217 (329)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~ 217 (329)
+++.....+..++.... .++..+...+. .+.+.+++..
T Consensus 223 ~l~~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHHHH
Confidence 99988875422333333 34444442333 3666666654
No 492
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=38.12 E-value=3.1e+02 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHh
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKC 43 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~ 43 (329)
+..|+ .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56666 577777788888888888443
No 493
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.02 E-value=3.4e+02 Score=25.39 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=39.2
Q ss_pred hhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC---C----------CccHHHHHHHHHHHHhcchHHHHHHHH
Q 020193 9 KPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN---C----------QQCVLLYNSLLFALCEVKLFHGAYALI 75 (329)
Q Consensus 9 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~----------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 75 (329)
.+.|+..+......+++.. .|+...++.+++++...+ + ..+......++.++.. ++...++.++
T Consensus 192 ~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l 268 (709)
T PRK08691 192 DSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKA 268 (709)
T ss_pred HHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3446666666666666554 467777777776654322 0 0112223333333333 5666666666
Q ss_pred HHHHHcCCcc
Q 020193 76 RRMIRKGFVP 85 (329)
Q Consensus 76 ~~~~~~~~~~ 85 (329)
+++...|..+
T Consensus 269 ~~L~~~G~d~ 278 (709)
T PRK08691 269 QEMAACAVGF 278 (709)
T ss_pred HHHHHhCCCH
Confidence 6666665543
No 494
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=37.93 E-value=1.1e+02 Score=19.68 Aligned_cols=10 Identities=0% Similarity=-0.419 Sum_probs=3.4
Q ss_pred hcCCCccHHH
Q 020193 45 AFNCQQCVLL 54 (329)
Q Consensus 45 ~~~~~~~~~~ 54 (329)
+.|.++|..+
T Consensus 52 ~~~~~id~~~ 61 (103)
T PF00772_consen 52 REGEPIDPIT 61 (103)
T ss_dssp HTTS--SHHH
T ss_pred HcCCCCCHHH
Confidence 3444444443
No 495
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.79 E-value=98 Score=24.06 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=42.9
Q ss_pred HHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 26 EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
...+.++.+.|.+++.+....- |.....|..+....-+.|+++.|.+.|++..+..
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 3456778888888888887764 5667778888888888888888888888877653
No 496
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.15 E-value=3.1e+02 Score=24.58 Aligned_cols=61 Identities=10% Similarity=0.089 Sum_probs=30.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
..++.-|.+.+++++|..++..|.=... .---...+.++..+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3456677777777777777776631110 011122333444444444444445555554443
No 497
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.98 E-value=1.8e+02 Score=21.88 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=8.2
Q ss_pred HHhcCChHHHHHHHHHH
Q 020193 132 LLNAGYLESAKQMVNKM 148 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~ 148 (329)
..+.|++++|.+-++++
T Consensus 39 ~~H~~~~eeA~~~l~~a 55 (204)
T COG2178 39 LLHRGDFEEAEKKLKKA 55 (204)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 34445555555544444
No 498
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=36.77 E-value=2.2e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=15.2
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHH
Q 020193 121 PVRGRDLLVQGLLNAGYLESAKQMV 145 (329)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~ 145 (329)
++.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4455666777777777777666554
No 499
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.69 E-value=4.5e+02 Score=26.33 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC-hhhHHHHHHHHHccCChhHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGH--KPF-PSLYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~ 249 (329)
-|..+++.+-+.+..+.+.++-..+++.-. .|+ ..+++.+.+.....|.+-+|...
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a 1043 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA 1043 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH
Confidence 355566666666666666666655554311 112 22345555555555555555443
No 500
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.63 E-value=1.3e+02 Score=19.91 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=33.6
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHcCCc
Q 020193 21 SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK--LFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 84 (329)
..++.-|...|+.++|..-+.++.... -.......++..+...+ .-+....++..+...+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 445666777788888888887763321 22334444555554442 233455566666655543
Done!