Query 020193
Match_columns 329
No_of_seqs 697 out of 1389
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 13:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 9.4E-36 3.2E-40 251.7 24.3 203 3-205 11-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.3E-35 7.9E-40 249.4 24.3 207 34-240 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 6.6E-32 2.3E-36 236.4 33.0 310 12-327 195-580 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.6E-32 5.4E-37 240.4 29.0 297 3-308 293-595 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-27 3.8E-32 198.7 37.3 307 14-328 64-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 7.8E-27 2.7E-31 193.6 37.4 315 4-327 21-335 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 4.4E-26 1.5E-30 192.7 35.2 306 14-328 23-360 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 3.6E-23 1.2E-27 169.4 37.1 305 16-328 2-337 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-23 5.6E-28 177.0 35.3 293 2-304 46-370 (450)
10 2gw1_A Mitochondrial precursor 99.9 3.4E-23 1.2E-27 177.9 30.9 316 3-326 27-478 (514)
11 3hym_B Cell division cycle pro 99.9 1.1E-22 3.7E-27 164.8 32.0 296 12-314 17-322 (330)
12 2gw1_A Mitochondrial precursor 99.9 5.7E-22 2E-26 170.3 33.1 302 17-327 6-402 (514)
13 3fp2_A TPR repeat-containing p 99.9 2.3E-21 7.7E-26 167.5 34.5 318 2-327 45-492 (537)
14 3hym_B Cell division cycle pro 99.9 1.1E-21 3.6E-26 158.9 29.4 274 49-328 19-301 (330)
15 3ieg_A DNAJ homolog subfamily 99.9 8.6E-21 2.9E-25 155.2 34.3 299 3-309 24-352 (359)
16 1fch_A Peroxisomal targeting s 99.9 7.7E-22 2.6E-26 162.3 25.0 292 27-323 35-356 (368)
17 4eqf_A PEX5-related protein; a 99.9 2.6E-21 8.8E-26 159.1 25.0 268 51-322 64-352 (365)
18 3fp2_A TPR repeat-containing p 99.9 1.3E-20 4.5E-25 162.7 30.6 304 16-327 24-408 (537)
19 4eqf_A PEX5-related protein; a 99.9 8.5E-22 2.9E-26 161.9 21.7 265 16-285 64-350 (365)
20 1fch_A Peroxisomal targeting s 99.9 1.1E-20 3.7E-25 155.4 27.6 267 16-287 63-355 (368)
21 3cv0_A Peroxisome targeting si 99.9 1.6E-20 5.5E-25 151.7 26.8 265 16-286 20-310 (327)
22 3cv0_A Peroxisome targeting si 99.9 1.6E-20 5.4E-25 151.8 24.9 268 51-324 20-313 (327)
23 3mkr_A Coatomer subunit epsilo 99.9 4.9E-19 1.7E-23 140.3 26.8 276 24-318 6-286 (291)
24 3mkr_A Coatomer subunit epsilo 99.9 6.4E-19 2.2E-23 139.6 24.3 256 59-328 6-266 (291)
25 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-20 4E-25 165.4 12.3 150 157-311 127-286 (1134)
26 1b89_A Protein (clathrin heavy 99.8 6.8E-20 2.3E-24 148.9 14.5 267 15-319 30-304 (449)
27 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-20 4.2E-25 165.3 9.4 129 190-318 125-257 (1134)
28 3uq3_A Heat shock protein STI1 99.8 2.1E-17 7.1E-22 128.8 25.0 223 18-289 6-234 (258)
29 2pl2_A Hypothetical conserved 99.8 6.6E-18 2.3E-22 128.1 21.3 198 14-217 2-210 (217)
30 2xm6_A Protein corresponding t 99.8 2.4E-15 8.2E-20 128.4 39.5 287 16-326 74-432 (490)
31 3uq3_A Heat shock protein STI1 99.8 2.5E-17 8.5E-22 128.3 23.4 226 88-327 6-237 (258)
32 2xm6_A Protein corresponding t 99.8 6.6E-15 2.2E-19 125.7 40.0 294 4-324 29-358 (490)
33 2pl2_A Hypothetical conserved 99.8 2.1E-17 7E-22 125.4 21.2 198 49-252 2-210 (217)
34 1b89_A Protein (clathrin heavy 99.8 3.2E-19 1.1E-23 145.0 11.2 240 29-310 15-254 (449)
35 4g1t_A Interferon-induced prot 99.8 1.2E-15 4E-20 129.7 33.3 309 14-327 48-402 (472)
36 1xnf_A Lipoprotein NLPI; TPR, 99.8 2E-17 6.8E-22 130.2 19.5 221 29-255 17-243 (275)
37 3u4t_A TPR repeat-containing p 99.8 1.1E-16 3.7E-21 125.8 23.3 165 18-185 4-170 (272)
38 1ouv_A Conserved hypothetical 99.8 4.6E-15 1.6E-19 116.7 31.0 223 16-256 5-251 (273)
39 2ooe_A Cleavage stimulation fa 99.8 8.1E-15 2.8E-19 126.4 35.2 183 140-325 304-491 (530)
40 2h6f_A Protein farnesyltransfe 99.8 4.6E-16 1.6E-20 127.4 25.5 230 17-253 97-344 (382)
41 3u4t_A TPR repeat-containing p 99.8 5.5E-16 1.9E-20 121.8 24.7 243 52-302 3-259 (272)
42 4g1t_A Interferon-induced prot 99.8 3.2E-15 1.1E-19 127.0 31.2 309 15-328 92-461 (472)
43 2ho1_A Type 4 fimbrial biogene 99.8 1E-15 3.6E-20 118.8 26.0 201 52-256 37-238 (252)
44 2h6f_A Protein farnesyltransfe 99.8 3.9E-16 1.3E-20 127.8 24.4 250 51-308 96-364 (382)
45 1ouv_A Conserved hypothetical 99.8 7.8E-15 2.7E-19 115.3 31.0 226 49-292 3-252 (273)
46 2vq2_A PILW, putative fimbrial 99.8 1.6E-15 5.4E-20 115.5 26.2 201 16-219 7-209 (225)
47 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-16 4.1E-21 123.3 19.8 200 16-220 22-221 (243)
48 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-16 5.6E-21 124.9 20.0 248 63-320 16-269 (275)
49 2vq2_A PILW, putative fimbrial 99.8 2.8E-15 9.7E-20 114.1 26.3 204 49-255 5-210 (225)
50 2ho1_A Type 4 fimbrial biogene 99.7 3E-15 1E-19 116.2 25.6 202 87-292 37-239 (252)
51 3sf4_A G-protein-signaling mod 99.7 1.8E-16 6.3E-21 131.8 19.4 300 14-314 6-364 (406)
52 2q7f_A YRRB protein; TPR, prot 99.7 5.1E-16 1.7E-20 119.8 20.0 196 90-290 26-221 (243)
53 4a1s_A PINS, partner of inscut 99.7 5.2E-16 1.8E-20 129.4 18.9 271 19-290 50-371 (411)
54 4a1s_A PINS, partner of inscut 99.7 7.2E-16 2.5E-20 128.6 17.9 276 51-327 47-373 (411)
55 3ulq_A Response regulator aspa 99.7 7.8E-15 2.7E-19 121.2 23.8 298 27-327 22-369 (383)
56 3ro2_A PINS homolog, G-protein 99.7 1.8E-15 6.3E-20 122.3 19.6 271 18-289 6-330 (338)
57 3sf4_A G-protein-signaling mod 99.7 1.7E-15 5.9E-20 125.9 18.8 277 49-326 6-336 (406)
58 3ro2_A PINS homolog, G-protein 99.7 1.1E-15 3.9E-20 123.5 17.1 275 52-327 5-333 (338)
59 2ond_A Cleavage stimulation fa 99.7 1.3E-13 4.3E-18 110.4 26.8 218 34-256 33-270 (308)
60 3vtx_A MAMA; tetratricopeptide 99.7 3.2E-14 1.1E-18 104.8 21.5 166 16-185 4-169 (184)
61 2ond_A Cleavage stimulation fa 99.7 2.5E-13 8.6E-18 108.6 27.8 238 51-292 7-271 (308)
62 1xi4_A Clathrin heavy chain; a 99.7 2.2E-13 7.7E-18 123.9 29.3 256 23-327 1055-1310(1630)
63 4abn_A Tetratricopeptide repea 99.6 1.5E-14 5.1E-19 122.6 18.9 216 66-287 82-317 (474)
64 3vtx_A MAMA; tetratricopeptide 99.6 2.1E-13 7.1E-18 100.5 22.5 166 51-220 4-169 (184)
65 3q15_A PSP28, response regulat 99.6 2.5E-13 8.5E-18 112.0 25.3 311 13-327 6-366 (378)
66 3nf1_A KLC 1, kinesin light ch 99.6 5.5E-15 1.9E-19 118.3 14.9 97 124-220 113-223 (311)
67 3nf1_A KLC 1, kinesin light ch 99.6 3.5E-15 1.2E-19 119.4 13.6 173 14-186 24-224 (311)
68 1xi4_A Clathrin heavy chain; a 99.6 1.6E-12 5.4E-17 118.5 31.3 253 29-318 1088-1376(1630)
69 4abn_A Tetratricopeptide repea 99.6 2.9E-14 1E-18 120.8 19.5 213 102-320 83-315 (474)
70 1hz4_A MALT regulatory protein 99.6 2.4E-12 8.1E-17 105.9 27.1 299 19-317 16-356 (373)
71 3ulq_A Response regulator aspa 99.6 4.9E-13 1.7E-17 110.4 22.8 231 58-290 109-367 (383)
72 3e4b_A ALGK; tetratricopeptide 99.6 3.1E-12 1E-16 107.8 27.8 189 121-325 175-386 (452)
73 1hz4_A MALT regulatory protein 99.6 3.2E-12 1.1E-16 105.1 26.9 273 54-326 16-322 (373)
74 3e4b_A ALGK; tetratricopeptide 99.6 2.9E-13 9.9E-18 114.0 20.8 284 23-326 9-351 (452)
75 2ooe_A Cleavage stimulation fa 99.6 1.2E-11 4.1E-16 106.6 31.0 259 29-291 190-492 (530)
76 3as5_A MAMA; tetratricopeptide 99.6 6.6E-13 2.3E-17 97.6 19.5 164 18-185 9-172 (186)
77 4gyw_A UDP-N-acetylglucosamine 99.6 4E-13 1.4E-17 118.5 19.5 168 14-185 6-173 (723)
78 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.8E-17 115.1 20.6 168 49-220 6-173 (723)
79 3as5_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 93.7 19.3 163 53-219 9-171 (186)
80 4i17_A Hypothetical protein; T 99.5 7.5E-12 2.6E-16 95.4 21.1 135 15-151 5-146 (228)
81 4i17_A Hypothetical protein; T 99.5 9.8E-12 3.4E-16 94.8 20.7 181 49-233 4-220 (228)
82 3edt_B KLC 2, kinesin light ch 99.5 1.5E-12 5.2E-17 102.4 15.6 228 28-256 12-281 (283)
83 3edt_B KLC 2, kinesin light ch 99.5 1.7E-12 5.9E-17 102.1 15.8 157 64-220 13-197 (283)
84 3q15_A PSP28, response regulat 99.5 1.1E-11 3.8E-16 102.1 21.2 231 56-290 105-364 (378)
85 1qqe_A Vesicular transport pro 99.4 4.8E-11 1.7E-15 94.6 20.5 234 34-289 2-267 (292)
86 1qqe_A Vesicular transport pro 99.4 4.5E-11 1.5E-15 94.7 19.9 208 32-254 32-267 (292)
87 3qky_A Outer membrane assembly 99.4 6.1E-11 2.1E-15 92.4 20.1 103 14-117 12-127 (261)
88 2fo7_A Synthetic consensus TPR 99.4 8E-11 2.7E-15 81.4 16.8 130 19-151 3-132 (136)
89 3urz_A Uncharacterized protein 99.4 1E-10 3.4E-15 87.8 17.4 188 17-230 4-193 (208)
90 3dra_A Protein farnesyltransfe 99.3 3.1E-09 1.1E-13 83.8 26.3 221 29-254 44-285 (306)
91 3mv2_B Coatomer subunit epsilo 99.3 3.2E-10 1.1E-14 88.6 20.0 245 24-292 20-283 (310)
92 2pzi_A Probable serine/threoni 99.3 3.5E-11 1.2E-15 106.5 16.3 174 28-207 402-583 (681)
93 2fo7_A Synthetic consensus TPR 99.3 2.4E-10 8.3E-15 78.9 17.3 129 54-185 3-131 (136)
94 3qky_A Outer membrane assembly 99.3 2.4E-10 8.2E-15 89.0 18.4 188 49-256 12-224 (261)
95 3mv2_B Coatomer subunit epsilo 99.3 4.7E-10 1.6E-14 87.6 19.7 179 71-256 85-282 (310)
96 4e6h_A MRNA 3'-END-processing 99.3 2.3E-08 7.7E-13 87.6 32.3 321 4-327 169-571 (679)
97 4ga2_A E3 SUMO-protein ligase 99.3 3.7E-11 1.3E-15 85.1 11.9 144 24-171 4-148 (150)
98 3urz_A Uncharacterized protein 99.3 4.5E-10 1.5E-14 84.2 18.0 190 54-270 6-198 (208)
99 3dra_A Protein farnesyltransfe 99.3 1E-08 3.6E-13 80.8 26.3 234 66-304 47-300 (306)
100 2r5s_A Uncharacterized protein 99.3 7.3E-11 2.5E-15 86.0 12.2 161 19-183 8-170 (176)
101 3qou_A Protein YBBN; thioredox 99.3 1.5E-10 5.1E-15 91.4 14.5 168 49-220 114-283 (287)
102 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.3E-09 7.8E-14 81.4 20.2 188 16-223 3-215 (225)
103 2vsy_A XCC0866; transferase, g 99.3 3.7E-10 1.3E-14 98.2 17.7 155 30-188 2-159 (568)
104 4e6h_A MRNA 3'-END-processing 99.3 4.4E-08 1.5E-12 85.8 30.5 143 5-149 55-221 (679)
105 3rjv_A Putative SEL1 repeat pr 99.2 4.2E-09 1.4E-13 79.1 21.2 176 35-222 4-198 (212)
106 2pzi_A Probable serine/threoni 99.2 3E-10 1E-14 100.6 17.1 173 133-312 402-583 (681)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.7E-09 1.3E-13 80.2 20.6 186 51-257 3-214 (225)
108 3rjv_A Putative SEL1 repeat pr 99.2 1.9E-09 6.4E-14 81.0 18.6 176 70-257 4-198 (212)
109 3qou_A Protein YBBN; thioredox 99.2 8.6E-10 2.9E-14 87.1 17.1 168 84-255 114-283 (287)
110 2ifu_A Gamma-SNAP; membrane fu 99.2 8.8E-10 3E-14 87.9 17.2 198 30-254 4-222 (307)
111 2ifu_A Gamma-SNAP; membrane fu 99.2 8.3E-10 2.8E-14 88.1 16.2 160 59-219 43-222 (307)
112 4ga2_A E3 SUMO-protein ligase 99.2 1.9E-10 6.5E-15 81.4 10.6 142 61-206 6-148 (150)
113 2r5s_A Uncharacterized protein 99.2 4.7E-10 1.6E-14 81.7 12.9 54 129-183 13-66 (176)
114 2vsy_A XCC0866; transferase, g 99.2 1.7E-09 5.7E-14 94.0 17.8 155 65-223 2-159 (568)
115 3q7a_A Farnesyltransferase alp 99.1 9.1E-08 3.1E-12 76.3 25.0 176 27-207 64-257 (349)
116 3u3w_A Transcriptional activat 99.1 3.1E-08 1.1E-12 78.4 20.8 127 128-254 121-264 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.1E-08 7.3E-13 75.2 18.3 128 19-152 8-151 (213)
118 2uy1_A Cleavage stimulation fa 99.1 9.9E-07 3.4E-11 74.9 29.9 123 194-324 288-411 (493)
119 3u3w_A Transcriptional activat 99.1 9.8E-08 3.3E-12 75.5 22.5 162 128-289 81-264 (293)
120 2c2l_A CHIP, carboxy terminus 99.1 1.7E-09 5.7E-14 85.1 12.1 196 15-220 2-198 (281)
121 3q7a_A Farnesyltransferase alp 99.1 2.1E-07 7.2E-12 74.2 23.9 225 62-291 64-331 (349)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.1 2.6E-08 8.8E-13 74.7 17.9 131 53-188 7-152 (213)
123 1a17_A Serine/threonine protei 99.0 1.7E-08 5.7E-13 72.4 15.4 94 20-115 16-109 (166)
124 4gco_A Protein STI-1; structur 99.0 1.2E-08 4E-13 69.7 13.7 96 19-116 15-110 (126)
125 2qfc_A PLCR protein; TPR, HTH, 99.0 9.1E-08 3.1E-12 75.7 19.9 164 91-254 79-264 (293)
126 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-07 6.2E-12 74.0 21.4 161 163-323 81-263 (293)
127 4gco_A Protein STI-1; structur 99.0 1.6E-08 5.6E-13 68.9 13.3 99 52-152 13-111 (126)
128 1na0_A Designed protein CTPR3; 99.0 2.4E-08 8.1E-13 67.7 14.2 98 17-116 9-106 (125)
129 2lni_A Stress-induced-phosphop 99.0 1.9E-08 6.7E-13 69.0 13.9 119 14-135 13-131 (133)
130 1p5q_A FKBP52, FK506-binding p 99.0 1.9E-09 6.4E-14 87.1 10.0 143 31-176 127-283 (336)
131 3gyz_A Chaperone protein IPGC; 99.0 2.6E-09 8.7E-14 75.3 9.2 102 49-152 33-134 (151)
132 2vyi_A SGTA protein; chaperone 99.0 1.5E-08 5.1E-13 69.3 12.8 117 17-136 12-128 (131)
133 2e2e_A Formate-dependent nitri 99.0 7E-09 2.4E-13 75.4 11.4 122 28-152 21-145 (177)
134 1a17_A Serine/threonine protei 99.0 5.6E-08 1.9E-12 69.6 15.8 129 52-183 13-143 (166)
135 2uy1_A Cleavage stimulation fa 99.0 2.7E-06 9.1E-11 72.3 28.1 293 15-323 13-380 (493)
136 2vgx_A Chaperone SYCD; alterna 98.9 1.4E-08 4.7E-13 71.5 11.4 109 40-151 10-118 (148)
137 2c2l_A CHIP, carboxy terminus 98.9 1.7E-08 5.8E-13 79.3 13.0 196 50-256 2-199 (281)
138 3gyz_A Chaperone protein IPGC; 98.9 1.5E-08 5E-13 71.4 11.3 103 16-122 35-137 (151)
139 1na0_A Designed protein CTPR3; 98.9 7.8E-08 2.7E-12 65.0 14.7 98 52-151 9-106 (125)
140 4f3v_A ESX-1 secretion system 98.9 9E-08 3.1E-12 73.9 16.0 187 29-221 18-237 (282)
141 3gw4_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 73.5 13.4 156 28-184 3-174 (203)
142 2vyi_A SGTA protein; chaperone 98.9 4.8E-08 1.6E-12 66.7 13.2 119 51-172 11-129 (131)
143 2lni_A Stress-induced-phosphop 98.9 5.7E-08 1.9E-12 66.7 13.3 101 49-151 13-113 (133)
144 2fbn_A 70 kDa peptidylprolyl i 98.9 6.2E-09 2.1E-13 77.3 8.6 149 24-175 11-174 (198)
145 3gw4_A Uncharacterized protein 98.9 4.2E-08 1.4E-12 72.9 12.9 119 64-183 4-133 (203)
146 1p5q_A FKBP52, FK506-binding p 98.9 6.2E-08 2.1E-12 78.2 14.5 132 16-150 146-293 (336)
147 2e2e_A Formate-dependent nitri 98.9 3.8E-08 1.3E-12 71.5 12.0 122 63-187 21-145 (177)
148 2xcb_A PCRH, regulatory protei 98.9 4.2E-08 1.4E-12 68.5 11.6 99 51-151 17-115 (142)
149 2vgx_A Chaperone SYCD; alterna 98.9 7.3E-08 2.5E-12 67.7 12.9 100 16-117 20-119 (148)
150 3dss_A Geranylgeranyl transfer 98.9 1.7E-05 5.8E-10 63.0 27.8 137 29-169 41-191 (331)
151 3dss_A Geranylgeranyl transfer 98.8 5.1E-06 1.7E-10 66.0 24.2 232 52-291 26-304 (331)
152 1elw_A TPR1-domain of HOP; HOP 98.8 2.2E-07 7.5E-12 62.1 14.4 98 17-116 4-101 (118)
153 4f3v_A ESX-1 secretion system 98.8 8.2E-08 2.8E-12 74.1 13.3 187 64-256 18-237 (282)
154 2xcb_A PCRH, regulatory protei 98.8 5.3E-08 1.8E-12 67.9 11.3 100 16-117 17-116 (142)
155 3upv_A Heat shock protein STI1 98.8 2.3E-07 7.9E-12 63.1 13.3 60 20-80 7-66 (126)
156 3upv_A Heat shock protein STI1 98.8 1.8E-07 6.1E-12 63.7 12.4 100 51-152 3-102 (126)
157 4gcn_A Protein STI-1; structur 98.8 2.3E-07 7.9E-12 63.3 12.7 96 19-115 10-111 (127)
158 1elw_A TPR1-domain of HOP; HOP 98.8 7E-07 2.4E-11 59.5 14.6 98 52-151 4-101 (118)
159 2kck_A TPR repeat; tetratricop 98.8 2.5E-07 8.5E-12 61.2 12.0 100 16-117 5-107 (112)
160 3sz7_A HSC70 cochaperone (SGT) 98.7 3.2E-07 1.1E-11 65.7 13.3 99 16-116 10-108 (164)
161 3q49_B STIP1 homology and U bo 98.7 4.2E-07 1.4E-11 62.7 13.6 99 15-115 7-105 (137)
162 1elr_A TPR2A-domain of HOP; HO 98.7 1.8E-07 6.2E-12 63.8 11.5 99 17-116 4-108 (131)
163 2fbn_A 70 kDa peptidylprolyl i 98.7 3E-07 1E-11 68.1 12.8 131 17-150 38-185 (198)
164 2dba_A Smooth muscle cell asso 98.7 8.2E-07 2.8E-11 62.0 14.2 99 16-116 27-128 (148)
165 4b4t_Q 26S proteasome regulato 98.7 3.2E-06 1.1E-10 70.6 20.1 197 59-255 11-244 (434)
166 2kck_A TPR repeat; tetratricop 98.7 5.9E-07 2E-11 59.3 12.3 93 125-219 9-104 (112)
167 3sz7_A HSC70 cochaperone (SGT) 98.7 9.3E-07 3.2E-11 63.2 13.8 100 50-151 9-108 (164)
168 4gcn_A Protein STI-1; structur 98.7 7.7E-07 2.6E-11 60.6 12.7 98 53-151 9-112 (127)
169 2dba_A Smooth muscle cell asso 98.7 1.8E-06 6.1E-11 60.3 14.7 101 49-152 25-129 (148)
170 4b4t_Q 26S proteasome regulato 98.7 2.8E-06 9.5E-11 71.0 18.2 198 93-290 10-244 (434)
171 3q49_B STIP1 homology and U bo 98.6 1.2E-06 4E-11 60.4 13.2 99 50-150 7-105 (137)
172 1elr_A TPR2A-domain of HOP; HO 98.6 3.9E-07 1.3E-11 62.1 10.6 99 52-151 4-108 (131)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 7.4E-08 2.5E-12 81.2 8.0 117 32-150 249-379 (457)
174 1hxi_A PEX5, peroxisome target 98.6 5.7E-07 1.9E-11 60.7 11.0 96 19-116 19-114 (121)
175 2xev_A YBGF; tetratricopeptide 98.6 2.7E-06 9.3E-11 57.8 13.3 94 21-116 6-105 (129)
176 1wao_1 Serine/threonine protei 98.5 3.7E-07 1.3E-11 77.3 10.0 122 22-146 11-134 (477)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.1E-06 7.2E-11 72.3 14.5 130 17-149 268-413 (457)
178 1hxi_A PEX5, peroxisome target 98.5 1.9E-06 6.6E-11 58.0 11.3 94 125-220 20-113 (121)
179 1ihg_A Cyclophilin 40; ppiase 98.5 1.9E-06 6.6E-11 70.3 12.9 89 87-177 273-361 (370)
180 1wao_1 Serine/threonine protei 98.5 2.1E-06 7.2E-11 72.7 13.3 121 128-251 12-134 (477)
181 3ro3_A PINS homolog, G-protein 98.5 1.3E-06 4.3E-11 61.9 10.3 96 194-289 51-156 (164)
182 3ro3_A PINS homolog, G-protein 98.5 2.1E-06 7.1E-11 60.8 11.3 25 55-79 12-36 (164)
183 3rkv_A Putative peptidylprolyl 98.5 4.5E-06 1.5E-10 59.4 12.8 99 17-116 11-126 (162)
184 3k9i_A BH0479 protein; putativ 98.5 6.6E-07 2.2E-11 60.0 7.7 87 29-116 2-90 (117)
185 1dce_A Protein (RAB geranylger 98.5 3.1E-05 1E-09 66.9 19.8 173 32-209 44-243 (567)
186 2xev_A YBGF; tetratricopeptide 98.4 1.8E-05 6.2E-10 53.6 14.8 22 163-184 82-103 (129)
187 1ihg_A Cyclophilin 40; ppiase 98.4 5.2E-06 1.8E-10 67.8 13.2 91 121-213 272-362 (370)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 2.3E-06 7.7E-11 69.1 9.6 149 18-187 180-329 (338)
189 3rkv_A Putative peptidylprolyl 98.3 1.1E-05 3.8E-10 57.4 12.3 99 52-151 11-126 (162)
190 3k9i_A BH0479 protein; putativ 98.3 1.7E-06 5.9E-11 57.9 7.4 86 65-151 3-90 (117)
191 1dce_A Protein (RAB geranylger 98.3 8.2E-05 2.8E-09 64.3 18.8 169 104-277 46-241 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.3 2.7E-06 9.3E-11 68.6 8.8 150 52-222 179-329 (338)
193 2hr2_A Hypothetical protein; a 98.3 2.4E-05 8.3E-10 54.6 11.9 61 19-80 13-85 (159)
194 2hr2_A Hypothetical protein; a 98.2 1.5E-05 5.1E-10 55.7 10.5 97 194-290 13-130 (159)
195 1klx_A Cysteine rich protein B 98.2 6.2E-05 2.1E-09 51.9 13.3 109 32-151 10-126 (138)
196 3n71_A Histone lysine methyltr 98.2 6.7E-06 2.3E-10 69.4 9.3 123 202-324 319-462 (490)
197 3n71_A Histone lysine methyltr 98.2 1E-05 3.5E-10 68.3 10.2 125 166-290 318-463 (490)
198 1klx_A Cysteine rich protein B 98.2 0.00014 4.8E-09 50.1 14.3 111 66-187 9-127 (138)
199 2l6j_A TPR repeat-containing p 98.2 1.3E-05 4.6E-10 52.6 8.6 91 16-107 3-98 (111)
200 1na3_A Designed protein CTPR2; 98.1 3.3E-05 1.1E-09 48.6 10.0 79 17-97 9-87 (91)
201 1zu2_A Mitochondrial import re 98.1 2.8E-05 9.6E-10 54.2 9.4 94 28-125 13-127 (158)
202 2kat_A Uncharacterized protein 98.1 4.4E-05 1.5E-09 50.6 9.7 78 36-115 4-81 (115)
203 3ma5_A Tetratricopeptide repea 98.0 3.6E-05 1.2E-09 49.7 8.6 67 14-81 4-70 (100)
204 1na3_A Designed protein CTPR2; 98.0 9.6E-05 3.3E-09 46.3 10.2 79 52-132 9-87 (91)
205 2kat_A Uncharacterized protein 98.0 6.1E-05 2.1E-09 49.9 9.5 77 3-81 6-82 (115)
206 2l6j_A TPR repeat-containing p 98.0 4.2E-05 1.4E-09 50.1 8.6 90 51-143 3-99 (111)
207 1zu2_A Mitochondrial import re 97.9 8.5E-05 2.9E-09 51.8 8.8 95 63-161 13-128 (158)
208 3ly7_A Transcriptional activat 97.8 0.001 3.5E-08 53.3 15.0 143 49-196 191-347 (372)
209 3ma5_A Tetratricopeptide repea 97.8 0.00015 5E-09 46.7 8.0 66 49-115 4-69 (100)
210 3qww_A SET and MYND domain-con 97.6 0.00024 8.3E-09 59.0 8.3 89 239-327 310-412 (433)
211 3ly7_A Transcriptional activat 97.5 0.0051 1.7E-07 49.3 15.0 144 84-232 191-348 (372)
212 3qwp_A SET and MYND domain-con 97.5 0.00052 1.8E-08 57.0 8.8 90 237-326 297-400 (429)
213 3bee_A Putative YFRE protein; 97.4 0.0016 5.6E-08 41.0 8.6 67 14-81 3-72 (93)
214 2kc7_A BFR218_protein; tetratr 97.4 0.0027 9.4E-08 40.3 9.7 59 23-82 6-65 (99)
215 3qww_A SET and MYND domain-con 97.3 0.001 3.5E-08 55.2 9.3 62 88-149 341-409 (433)
216 3qwp_A SET and MYND domain-con 97.3 0.0013 4.4E-08 54.7 9.4 92 198-289 293-398 (429)
217 3u64_A Protein TP_0956; tetrat 97.2 0.023 7.9E-07 43.8 14.6 64 159-222 201-270 (301)
218 2kc7_A BFR218_protein; tetratr 97.2 0.00087 3E-08 42.7 5.9 54 131-185 9-63 (99)
219 3mkq_A Coatomer beta'-subunit; 97.2 0.023 7.8E-07 51.5 17.0 75 91-183 633-707 (814)
220 1pc2_A Mitochondria fission pr 97.1 0.0099 3.4E-07 41.0 10.7 84 32-117 13-101 (152)
221 3bee_A Putative YFRE protein; 97.1 0.013 4.4E-07 36.9 10.6 68 49-117 3-73 (93)
222 2v5f_A Prolyl 4-hydroxylase su 97.1 0.012 4E-07 37.9 10.3 67 15-81 3-75 (104)
223 3mkq_A Coatomer beta'-subunit; 97.0 0.022 7.5E-07 51.6 15.3 155 95-288 607-762 (814)
224 1pc2_A Mitochondria fission pr 97.0 0.0074 2.5E-07 41.6 9.1 86 207-296 13-103 (152)
225 3mkq_B Coatomer subunit alpha; 96.9 0.045 1.5E-06 38.8 12.8 44 28-77 16-59 (177)
226 3u64_A Protein TP_0956; tetrat 96.9 0.022 7.7E-07 43.8 11.6 83 34-117 180-270 (301)
227 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0092 3.1E-07 38.5 8.1 67 226-292 4-76 (104)
228 1wy6_A Hypothetical protein ST 96.8 0.057 1.9E-06 36.1 15.4 134 65-223 20-156 (172)
229 4h7y_A Dual specificity protei 96.5 0.035 1.2E-06 37.9 9.1 51 171-222 74-124 (161)
230 1wy6_A Hypothetical protein ST 96.3 0.12 4.1E-06 34.6 14.2 149 18-188 6-156 (172)
231 4h7y_A Dual specificity protei 96.3 0.09 3.1E-06 35.9 10.4 53 101-154 74-126 (161)
232 1nzn_A CGI-135 protein, fissio 96.2 0.034 1.2E-06 36.9 7.8 92 199-291 8-103 (126)
233 1nzn_A CGI-135 protein, fissio 96.2 0.065 2.2E-06 35.5 9.0 82 34-116 18-103 (126)
234 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.2E-06 34.8 15.8 129 60-218 13-141 (177)
235 4gns_B Protein CSD3, chitin bi 95.8 0.15 5.1E-06 45.3 12.2 128 20-149 251-398 (754)
236 3lvg_A Clathrin heavy chain 1; 95.8 8.7E-06 3E-10 66.7 -12.9 245 51-317 53-324 (624)
237 2ff4_A Probable regulatory pro 95.6 0.32 1.1E-05 39.8 12.9 74 53-127 172-250 (388)
238 4gns_B Protein CSD3, chitin bi 95.1 0.2 6.9E-06 44.5 10.6 53 235-288 345-397 (754)
239 4b4t_P 26S proteasome regulato 94.9 1.4 4.7E-05 36.8 22.0 255 30-288 29-321 (445)
240 4fhn_B Nucleoporin NUP120; pro 94.8 2 6.7E-05 40.8 17.2 193 127-326 817-1050(1139)
241 4b4t_P 26S proteasome regulato 94.7 1.6 5.6E-05 36.3 19.0 190 65-255 29-246 (445)
242 4fhn_B Nucleoporin NUP120; pro 94.6 2.7 9.1E-05 39.9 17.6 60 125-184 902-965 (1139)
243 1v54_E Cytochrome C oxidase po 94.6 0.47 1.6E-05 29.8 9.1 47 210-256 28-74 (109)
244 2ff4_A Probable regulatory pro 94.4 0.37 1.3E-05 39.4 10.2 68 233-301 177-249 (388)
245 4ady_A RPN2, 26S proteasome re 94.4 3 0.0001 38.2 19.3 256 27-289 384-656 (963)
246 3lvg_A Clathrin heavy chain 1; 94.2 4.2E-05 1.4E-09 62.8 -13.1 203 87-310 54-276 (624)
247 1v54_E Cytochrome C oxidase po 94.0 0.64 2.2E-05 29.2 8.7 69 237-306 19-88 (109)
248 2y69_E Cytochrome C oxidase su 93.7 0.97 3.3E-05 30.1 9.1 59 210-269 71-129 (152)
249 2y69_E Cytochrome C oxidase su 93.3 1.2 4E-05 29.8 8.7 64 242-306 68-131 (152)
250 1zbp_A Hypothetical protein VP 92.4 0.77 2.6E-05 34.9 8.1 116 25-151 5-129 (273)
251 3o48_A Mitochondria fission 1 92.3 1.4 4.8E-05 29.4 8.3 74 222-297 35-111 (134)
252 1y8m_A FIS1; mitochondria, unk 92.1 1.9 6.5E-05 29.2 10.7 72 223-296 35-109 (144)
253 3ffl_A Anaphase-promoting comp 91.8 1.4 4.8E-05 30.7 8.2 24 90-113 66-89 (167)
254 3ffl_A Anaphase-promoting comp 91.3 2.5 8.5E-05 29.5 9.0 61 194-254 22-90 (167)
255 3o48_A Mitochondria fission 1 91.2 2.3 7.8E-05 28.4 9.5 68 49-116 37-107 (134)
256 4b4t_R RPN7, 26S proteasome re 90.9 4.4 0.00015 33.6 12.0 99 123-221 132-237 (429)
257 4b4t_R RPN7, 26S proteasome re 90.7 3.8 0.00013 33.9 11.5 60 90-149 134-195 (429)
258 4ady_A RPN2, 26S proteasome re 89.6 13 0.00043 34.3 21.2 281 22-312 416-721 (963)
259 3txn_A 26S proteasome regulato 88.8 8.5 0.00029 31.4 19.8 166 18-184 20-208 (394)
260 1wdy_A 2-5A-dependent ribonucl 88.8 3.1 0.00011 31.7 9.1 20 23-42 8-27 (285)
261 2wpv_A GET4, UPF0363 protein Y 88.3 7.9 0.00027 30.4 17.3 86 61-146 62-158 (312)
262 1zbp_A Hypothetical protein VP 88.2 2 6.9E-05 32.7 7.2 54 97-151 7-60 (273)
263 1y8m_A FIS1; mitochondria, unk 88.1 4.6 0.00016 27.4 10.4 66 50-115 37-105 (144)
264 1wdy_A 2-5A-dependent ribonucl 86.4 6.9 0.00024 29.7 9.9 240 57-322 7-275 (285)
265 3txn_A 26S proteasome regulato 84.9 15 0.0005 30.1 22.4 57 57-113 104-165 (394)
266 2uwj_G Type III export protein 84.7 5.5 0.00019 25.0 6.8 17 169-185 80-96 (115)
267 2p58_C Putative type III secre 84.0 6 0.0002 24.9 7.5 12 134-145 52-63 (116)
268 2uwj_G Type III export protein 82.3 7.1 0.00024 24.5 6.5 79 31-117 20-98 (115)
269 3eiq_C Programmed cell death p 82.1 18 0.00062 29.0 11.1 209 89-306 56-297 (358)
270 2fu4_A Ferric uptake regulatio 82.1 6.1 0.00021 23.6 6.3 59 5-64 5-64 (83)
271 3kea_A K1L; tropism, ANK repea 82.1 7.1 0.00024 30.0 8.1 206 23-254 34-245 (285)
272 2p58_C Putative type III secre 81.6 7.6 0.00026 24.4 7.3 79 31-117 21-99 (116)
273 3lpz_A GET4 (YOR164C homolog); 79.8 21 0.00072 28.3 20.4 141 61-220 64-215 (336)
274 2zu6_B Programmed cell death p 78.5 22 0.00075 27.8 11.3 69 230-299 169-239 (307)
275 3eiq_C Programmed cell death p 78.5 24 0.00083 28.3 13.8 64 195-259 220-285 (358)
276 3eyy_A Putative iron uptake re 76.0 10 0.00035 25.7 6.5 40 6-47 8-47 (145)
277 2fe3_A Peroxide operon regulat 75.3 15 0.00051 24.9 7.2 60 43-103 13-72 (145)
278 3lpz_A GET4 (YOR164C homolog); 74.9 30 0.001 27.5 23.5 135 89-242 37-182 (336)
279 3jxi_A Vanilloid receptor-rela 73.3 6.5 0.00022 29.6 5.5 19 64-82 14-32 (260)
280 4a1g_A Mitotic checkpoint seri 72.9 12 0.00041 25.7 6.0 72 13-87 64-136 (152)
281 2d2s_A Exocyst complex compone 72.1 28 0.00096 26.0 9.1 89 198-289 24-118 (235)
282 3eu9_A Huntingtin-interacting 72.0 8.3 0.00028 28.3 5.8 208 26-255 15-235 (240)
283 3ygs_P Procaspase 9; apoptosis 71.6 14 0.00049 22.9 5.8 37 66-106 51-87 (97)
284 3esl_A Checkpoint serine/threo 71.1 27 0.00091 25.3 10.0 53 173-225 95-148 (202)
285 2w57_A Ferric uptake regulatio 70.7 12 0.00041 25.6 5.8 34 68-101 33-66 (150)
286 2xig_A Ferric uptake regulatio 69.2 15 0.00051 25.1 6.0 63 41-104 16-78 (150)
287 1k1a_A B-cell lymphoma 3-encod 68.0 32 0.0011 25.1 11.5 21 97-117 16-36 (241)
288 4ets_A Ferric uptake regulatio 67.9 15 0.00052 25.5 5.9 72 33-105 13-87 (162)
289 1qsa_A Protein (soluble lytic 67.6 64 0.0022 28.3 28.5 251 56-325 76-347 (618)
290 1bpo_A Protein (clathrin); cla 66.5 56 0.0019 27.3 9.5 106 31-141 343-448 (494)
291 2d2s_A Exocyst complex compone 65.8 39 0.0013 25.2 10.3 21 24-44 25-45 (235)
292 2wvi_A Mitotic checkpoint seri 65.6 31 0.0011 24.0 7.5 73 13-88 59-132 (164)
293 3hra_A Ankyrin repeat family p 64.9 28 0.00094 24.6 7.2 15 282-296 158-172 (201)
294 1mzb_A Ferric uptake regulatio 64.8 25 0.00084 23.5 6.3 35 67-101 33-67 (136)
295 2r9g_A AAA ATPase, central reg 61.1 44 0.0015 24.1 9.9 36 65-101 27-62 (204)
296 3esl_A Checkpoint serine/threo 60.4 46 0.0016 24.1 11.4 54 207-260 94-148 (202)
297 3hra_A Ankyrin repeat family p 60.2 42 0.0014 23.6 8.3 17 246-262 157-173 (201)
298 2zu6_B Programmed cell death p 60.1 60 0.002 25.4 12.9 59 20-80 6-66 (307)
299 3jxi_A Vanilloid receptor-rela 60.1 9.8 0.00034 28.5 4.1 55 24-78 9-72 (260)
300 1n11_A Ankyrin; clathrin, BAND 59.5 68 0.0023 26.2 9.4 39 3-41 28-68 (437)
301 4aez_C MAD3, mitotic spindle c 59.3 24 0.00083 26.0 5.7 72 13-87 113-185 (223)
302 3kea_A K1L; tropism, ANK repea 59.1 57 0.002 24.8 11.7 184 59-264 35-225 (285)
303 2wpv_A GET4, UPF0363 protein Y 58.3 65 0.0022 25.3 20.1 26 190-215 132-157 (312)
304 2p1h_A APAF-1, apoptotic prote 57.8 30 0.001 21.2 6.3 63 36-106 24-86 (94)
305 2qx5_A Nucleoporin NIC96; mRNA 56.8 1.1E+02 0.0036 27.2 12.4 277 22-329 157-475 (661)
306 2nsz_A Programmed cell death p 56.7 40 0.0014 22.3 10.1 65 20-85 10-76 (129)
307 1wty_A Hypothetical protein TT 55.9 30 0.001 22.5 5.3 77 207-290 3-80 (119)
308 4ets_A Ferric uptake regulatio 55.5 33 0.0011 23.7 5.8 70 69-139 14-86 (162)
309 2xig_A Ferric uptake regulatio 55.4 46 0.0016 22.6 7.1 61 77-138 17-77 (150)
310 3eu9_A Huntingtin-interacting 54.6 58 0.002 23.5 9.2 18 305-322 215-232 (240)
311 3bge_A Predicted ATPase; struc 54.5 58 0.002 23.5 8.7 33 66-98 21-53 (201)
312 3ljn_A Hypothetical protein; a 54.5 78 0.0027 25.0 10.3 21 132-152 91-111 (364)
313 3kae_A CDC27, possible protein 53.4 57 0.0019 23.1 7.4 79 203-287 44-139 (242)
314 3eyy_A Putative iron uptake re 52.3 48 0.0017 22.4 6.1 14 243-256 33-46 (145)
315 2fu4_A Ferric uptake regulatio 52.2 34 0.0012 20.1 6.4 57 254-311 9-66 (83)
316 4g8k_A 2-5A-dependent ribonucl 51.8 83 0.0028 24.5 12.4 22 21-42 26-47 (337)
317 4a1g_A Mitotic checkpoint seri 51.7 55 0.0019 22.4 9.1 69 49-120 65-134 (152)
318 2ion_A PDCD4, programmed cell 51.2 56 0.0019 22.4 8.8 22 127-148 14-35 (152)
319 1ug3_A EIF4GI, eukaryotic prot 50.9 91 0.0031 24.7 11.0 65 20-85 14-79 (339)
320 2ion_A PDCD4, programmed cell 50.5 58 0.002 22.3 10.1 64 20-84 12-77 (152)
321 2w57_A Ferric uptake regulatio 50.2 57 0.0019 22.2 6.7 23 242-264 32-54 (150)
322 1mzb_A Ferric uptake regulatio 50.2 53 0.0018 21.8 6.8 23 242-264 33-55 (136)
323 1k1a_A B-cell lymphoma 3-encod 50.1 70 0.0024 23.2 9.5 180 128-321 12-204 (241)
324 3b7b_A Euchromatic histone-lys 49.4 62 0.0021 23.5 7.0 21 270-290 215-235 (237)
325 4b4t_S RPN3, 26S proteasome re 49.1 1.2E+02 0.0043 25.8 10.8 66 51-116 230-299 (523)
326 2b7e_A PRE-mRNA processing pro 48.3 26 0.00091 19.4 3.4 29 104-132 3-31 (59)
327 2fe3_A Peroxide operon regulat 47.4 62 0.0021 21.8 7.9 41 235-275 29-69 (145)
328 2keb_A DNA polymerase subunit 47.1 50 0.0017 20.6 5.4 58 35-94 27-89 (101)
329 2rg8_A Programmed cell death p 47.0 70 0.0024 22.2 6.5 57 20-78 13-71 (165)
330 2nsz_A Programmed cell death p 46.0 62 0.0021 21.3 9.9 21 128-148 13-33 (129)
331 3mwm_A ZUR, putative metal upt 45.6 30 0.001 23.2 4.2 46 57-102 18-63 (139)
332 2wvi_A Mitotic checkpoint seri 45.5 74 0.0025 22.1 9.2 53 69-121 77-130 (164)
333 3bge_A Predicted ATPase; struc 45.4 83 0.0028 22.7 8.7 32 135-166 20-51 (201)
334 2o03_A Probable zinc uptake re 45.4 34 0.0012 22.6 4.4 45 58-102 16-60 (131)
335 3ljn_A Hypothetical protein; a 44.9 96 0.0033 24.5 7.9 217 15-252 16-266 (364)
336 3mwm_A ZUR, putative metal upt 44.8 40 0.0014 22.6 4.7 48 231-278 17-64 (139)
337 3pvs_A Replication-associated 44.7 1.4E+02 0.0046 24.9 13.7 56 204-259 267-327 (447)
338 2f6m_A Suppressor protein STP2 44.7 42 0.0014 19.1 5.5 44 55-99 5-48 (65)
339 3ctd_A Putative ATPase, AAA fa 44.1 91 0.0031 22.7 9.6 64 55-118 35-106 (213)
340 4aez_C MAD3, mitotic spindle c 43.9 95 0.0033 22.9 8.0 52 244-295 131-183 (223)
341 1ug3_A EIF4GI, eukaryotic prot 43.8 1.2E+02 0.0041 24.0 11.7 62 55-118 14-77 (339)
342 2o03_A Probable zinc uptake re 43.2 45 0.0015 22.0 4.7 47 232-278 15-61 (131)
343 3l6a_A Eukaryotic translation 43.0 1.3E+02 0.0044 24.2 16.7 76 19-95 14-91 (364)
344 3f3f_C Nucleoporin NUP85; stru 42.3 80 0.0027 27.2 6.9 81 166-248 490-570 (570)
345 1qsa_A Protein (soluble lytic 41.9 1.8E+02 0.0061 25.5 30.9 177 137-320 229-436 (618)
346 3bu8_A Telomeric repeat-bindin 41.9 1E+02 0.0035 22.6 7.3 21 60-80 122-142 (235)
347 1jog_A Hypothetical protein HI 41.8 79 0.0027 21.4 5.9 113 207-324 10-140 (146)
348 1bpo_A Protein (clathrin); cla 41.5 1.6E+02 0.0054 24.8 9.8 101 8-110 352-452 (494)
349 3ygs_P Procaspase 9; apoptosis 41.2 62 0.0021 20.0 6.4 37 101-141 51-87 (97)
350 4fke_A Aminopeptidase N; zinc 39.6 2.4E+02 0.008 26.2 18.1 158 127-290 691-859 (909)
351 3t8k_A Uncharacterized protein 39.5 97 0.0033 21.7 9.6 28 59-86 42-69 (186)
352 4gq2_M Nucleoporin NUP120; bet 39.0 1.8E+02 0.006 27.2 9.3 27 299-325 899-925 (950)
353 2r9g_A AAA ATPase, central reg 38.7 1.1E+02 0.0037 22.1 10.5 61 127-188 16-84 (204)
354 1gp8_A Protein (scaffolding pr 37.6 39 0.0013 16.7 3.3 25 301-325 14-38 (40)
355 3pvs_A Replication-associated 37.3 1.8E+02 0.0061 24.2 14.8 29 85-115 192-220 (447)
356 2yru_A Steroid receptor RNA ac 37.1 69 0.0024 20.8 4.6 42 75-116 49-90 (118)
357 2yru_A Steroid receptor RNA ac 36.9 86 0.0029 20.4 5.1 44 38-81 47-90 (118)
358 1oai_A Nuclear RNA export fact 36.3 34 0.0012 19.0 2.7 22 65-86 33-55 (59)
359 2pnn_A Transient receptor pote 36.1 74 0.0025 23.8 5.7 22 96-117 19-40 (273)
360 2rfa_A Transient receptor pote 35.3 1.2E+02 0.0042 21.7 9.4 17 25-41 8-24 (232)
361 2p22_A Suppressor protein STP2 34.7 1E+02 0.0035 21.7 5.4 56 49-105 108-163 (174)
362 1bd8_A P19INK4D CDK4/6 inhibit 34.0 76 0.0026 21.0 5.0 14 99-112 11-24 (156)
363 3aji_A 26S proteasome non-ATPa 33.9 1.3E+02 0.0044 21.6 9.7 15 61-75 12-26 (231)
364 2p22_A Suppressor protein STP2 33.1 96 0.0033 21.8 5.1 56 83-139 107-162 (174)
365 2ijq_A Hypothetical protein; s 32.5 1.2E+02 0.0043 20.9 8.4 49 171-219 46-102 (161)
366 4gq2_M Nucleoporin NUP120; bet 31.8 3.2E+02 0.011 25.5 11.5 48 124-171 899-950 (950)
367 3bu8_A Telomeric repeat-bindin 31.3 1.6E+02 0.0053 21.7 7.9 22 199-220 121-142 (235)
368 3ctd_A Putative ATPase, AAA fa 31.2 1.5E+02 0.0052 21.6 9.5 63 126-188 36-106 (213)
369 3t8k_A Uncharacterized protein 31.1 1.4E+02 0.0047 20.9 10.1 25 167-191 45-69 (186)
370 2pnn_A Transient receptor pote 31.0 1.5E+02 0.005 22.1 6.6 55 58-112 16-79 (273)
371 3ltj_A Alpharep-4; protein eng 31.0 1.4E+02 0.0047 21.0 18.2 91 120-219 88-178 (201)
372 3aji_A 26S proteasome non-ATPa 30.8 1.5E+02 0.005 21.2 8.6 57 24-85 10-66 (231)
373 1n3k_A Astrocytic phosphoprote 30.0 48 0.0016 22.0 3.1 45 280-325 41-85 (130)
374 1bd8_A P19INK4D CDK4/6 inhibit 29.9 72 0.0025 21.1 4.3 16 62-77 9-24 (156)
375 3rjo_A Endoplasmic reticulum a 29.7 2.3E+02 0.0079 23.2 19.4 155 126-289 201-367 (419)
376 1b79_A DNAB helicase; hexamer, 29.4 1.1E+02 0.0038 19.7 4.8 50 42-94 64-116 (119)
377 2etb_A Transient receptor pote 29.3 1.5E+02 0.005 21.8 6.3 16 306-321 142-157 (256)
378 2crb_A Nuclear receptor bindin 28.8 1E+02 0.0034 19.0 4.0 24 265-288 18-41 (97)
379 3t5v_B Nuclear mRNA export pro 28.6 1.3E+02 0.0043 25.2 6.0 60 194-253 178-246 (455)
380 3ltj_A Alpharep-4; protein eng 28.5 1.5E+02 0.0052 20.7 16.9 17 156-172 89-105 (201)
381 1q2z_A ATP-dependent DNA helic 28.4 1.2E+02 0.0042 19.6 5.3 49 66-117 41-93 (120)
382 3qil_A Clathrin heavy chain 1; 28.3 46 0.0016 21.8 2.6 40 23-65 38-77 (125)
383 2ko4_A Mediator of RNA polymer 27.7 88 0.003 18.5 3.5 32 257-288 31-62 (81)
384 3lxu_X Tripeptidyl-peptidase 2 27.2 3.4E+02 0.012 26.5 9.0 36 274-311 1296-1331(1354)
385 2ijq_A Hypothetical protein; s 26.7 1.6E+02 0.0055 20.4 8.5 13 31-43 46-58 (161)
386 3t5v_B Nuclear mRNA export pro 26.6 1.7E+02 0.0057 24.5 6.4 63 89-151 178-249 (455)
387 4fke_A Aminopeptidase N; zinc 26.3 4E+02 0.014 24.8 18.7 159 91-255 690-859 (909)
388 2p1h_A APAF-1, apoptotic prote 25.9 1.2E+02 0.0039 18.4 7.0 59 72-138 25-83 (94)
389 3bqo_A Telomeric repeat-bindin 25.9 73 0.0025 23.0 3.5 25 57-81 122-146 (211)
390 3ltm_A Alpha-REP4; protein eng 25.5 1.8E+02 0.0062 20.5 17.7 171 51-241 32-202 (211)
391 3lxu_X Tripeptidyl-peptidase 2 25.2 4.9E+02 0.017 25.5 9.9 36 99-136 1296-1331(1354)
392 3ltm_A Alpha-REP4; protein eng 24.7 1.9E+02 0.0064 20.4 16.5 79 86-172 32-110 (211)
393 1d1d_A Protein (capsid protein 24.7 2.3E+02 0.0079 21.5 7.4 28 49-76 35-63 (262)
394 2cwy_A Hypothetical protein TT 24.7 1.3E+02 0.0044 18.5 4.7 31 65-95 14-44 (94)
395 3qil_A Clathrin heavy chain 1; 24.1 1.1E+02 0.0039 20.0 3.9 52 230-284 35-86 (125)
396 1wgl_A TOLL-interacting protei 24.1 99 0.0034 17.1 4.1 23 274-296 35-57 (59)
397 3c1d_A Protein ORAA, regulator 23.6 1.8E+02 0.0062 19.9 12.2 48 35-84 48-95 (159)
398 2dzn_A Probable 26S proteasome 22.8 1.2E+02 0.0041 21.7 4.6 19 25-43 7-25 (228)
399 2rfa_A Transient receptor pote 22.3 2.2E+02 0.0074 20.3 10.0 24 235-258 159-182 (232)
400 2etb_A Transient receptor pote 21.4 2.4E+02 0.0083 20.5 8.8 20 63-82 10-29 (256)
401 1wty_A Hypothetical protein TT 21.2 1.7E+02 0.0059 18.7 6.5 76 172-254 3-79 (119)
402 3twr_A Tankyrase-2; ankyrin re 21.0 1.9E+02 0.0065 19.2 6.8 118 164-296 12-135 (165)
403 3gxv_A Replicative DNA helicas 20.9 1.8E+02 0.0062 18.9 6.0 14 86-99 93-106 (123)
404 2keb_A DNA polymerase subunit 20.7 1.6E+02 0.0056 18.3 6.8 32 71-102 28-59 (101)
405 3bqo_A Telomeric repeat-bindin 20.3 2.3E+02 0.0078 20.5 5.1 21 95-115 125-145 (211)
406 2dzn_A Probable 26S proteasome 20.1 1.6E+02 0.0055 20.9 4.8 10 273-282 182-191 (228)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-36 Score=251.75 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=178.8
Q ss_pred HHHhhhhhCCCCCCHH-HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc---------hHHHHH
Q 020193 3 KTIELMKPYNLSVSPQ-TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK---------LFHGAY 72 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~ 72 (329)
.+.+.+++.+...++. .++.+|+.|++.|++++|.++|++|.+.|++||..+||+||.+|++.+ .++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 3556777788777765 588899999999999999999999999999999999999999998654 478899
Q ss_pred HHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 020193 73 ALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 020193 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA 205 (329)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (329)
+.||..+|++++.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999988753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-35 Score=249.39 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=182.5
Q ss_pred hHHHHHHHHhhhcCCCccH-HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc---------h
Q 020193 34 DNAVEVFNKCTAFNCQQCV-LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK---------M 103 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 103 (329)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666677766665544 35889999999999999999999999999999999999999999987664 6
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
+.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 184 CKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
.+.|+.||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998764
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-32 Score=236.41 Aligned_cols=310 Identities=12% Similarity=0.036 Sum_probs=198.6
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCC-------------------------------------------
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNC------------------------------------------- 48 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------- 48 (329)
|.++++.+|+.++..|.+.|++++|.++|+++.+.+.
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 3455688899999999999999999999988876541
Q ss_pred ---------------------------CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 49 ---------------------------QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 49 ---------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
+++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESG 353 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhC
Confidence 134444455555555555555555555555544321 4444555555555555
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHH
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYY 181 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 181 (329)
++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554332 334556666666666666666776666666654322 45666667777777777777777777
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc----C
Q 020193 182 SVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----G 257 (329)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 257 (329)
++.+.++ .+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|.++|+++.+. +
T Consensus 432 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 432 TAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp HHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence 6665543 4566666777777777777777777777665432 25666777777777777777777777776654 4
Q ss_pred CCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 258 HPPN--RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 258 ~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++.+.+++
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 4555 5667777777777777777777777766554 3356677777777777777777777777666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-32 Score=240.39 Aligned_cols=297 Identities=12% Similarity=0.002 Sum_probs=263.5
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
++++.+.+. ++++.++..++..+.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+..
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 455555544 5899999999999999999999999999999877 6788999999999999999999999999998764
Q ss_pred CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHH
Q 020193 83 FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162 (329)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (329)
+.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..
T Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 446 (597)
T 2xpi_A 370 -PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLF 446 (597)
T ss_dssp -TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHH
T ss_pred -cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHH
Confidence 4478899999999999999999999999998764 45678999999999999999999999999998754 37889999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHH
Q 020193 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPF--PSLYAPIIKG 236 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~ 236 (329)
++.+|.+.|++++|.++|+++.+..+ .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 99999999999999999999998754 57889999999999999999999999999876 56777 6799999999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 020193 237 MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 308 (329)
|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. +-+...+..+..+|.
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 999999999999999999874 4588999999999999999999999999999864 235667777766553
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.1e-27 Score=198.72 Aligned_cols=307 Identities=15% Similarity=0.100 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
|.++.+|..+...+.+.|++++|...|+++.+.. |.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 4455566666666666666666666666665554 445555666666666666666666666666654321 33445555
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.+.+.. +...+..+...+...|++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCH
Confidence 666666666666666666665543 334556666666666777777777777766665432 455666666677777777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
++|...+++.....+ .+..++..+..++.+.|++++|...|+++.+.+.. +..++..+...+.+.|++++|...++++
T Consensus 220 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 220 DRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp THHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776666543 35677888888999999999999999998886433 5678888999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|.+.++.+.++.+
T Consensus 298 l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 298 LRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred Hhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 876 45678889999999999999999999999988753 34577889999999999999999999988877654
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=7.8e-27 Score=193.62 Aligned_cols=315 Identities=15% Similarity=0.057 Sum_probs=273.6
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF 83 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 83 (329)
.++.+.+.. |.++..+..+...+...|++++|...++...+.. |.+..+|..+...+.+.|++++|.+.|+++.+..
T Consensus 21 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 97 (388)
T 1w3b_A 21 HCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK- 97 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 344444333 5567788888899999999999999999998876 7889999999999999999999999999999864
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHH
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (329)
+.+..+|..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.... +..+|..+
T Consensus 98 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 175 (388)
T 1w3b_A 98 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNL 175 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 2356689999999999999999999999998875 344566778889999999999999999999987533 67899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 020193 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF 243 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 243 (329)
...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+++..+..+. +..++..+...+...|++
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999998764 45778899999999999999999999998876432 578899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
++|...|+++.+.+ +.+..++..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|.+.++.+
T Consensus 254 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 254 DLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999863 3367789999999999999999999999999764 557889999999999999999999999988
Q ss_pred hhhc
Q 020193 324 VSLR 327 (329)
Q Consensus 324 ~~~~ 327 (329)
.++.
T Consensus 332 l~~~ 335 (388)
T 1w3b_A 332 LEVF 335 (388)
T ss_dssp TTSC
T ss_pred HhcC
Confidence 7654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.4e-26 Score=192.75 Aligned_cols=306 Identities=12% Similarity=0.083 Sum_probs=263.2
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
|.++..+..+...+.+.|++++|..+|+.+.+.. |.+..+|..+..++...|++++|...|+++.+.+. .+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4567889999999999999999999999999876 77899999999999999999999999999998753 367889999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPV---RGRDLL------------VQGLLNAGYLESAKQMVNKMIKQGFVLDLE 158 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 158 (329)
..++...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...++++.+.... +..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 999999999999999999998865 2333 555555 44488999999999999999987533 788
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-----
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI----- 233 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----- 233 (329)
++..+..+|...|++++|.+.|+++.+..+ .+..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 899999999999999999999999987643 56789999999999999999999999999875432 34444444
Q ss_pred -------HHHHHccCChhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 020193 234 -------IKGMFRRGQFDDAFCFFSEMKIKGHPPN-----RPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFD 301 (329)
Q Consensus 234 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 301 (329)
...+...|++++|...|+++... .|+ ...+..+..++.+.|++++|...++++.+.. +.+...|.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78899999999999999999885 344 3478888999999999999999999998754 34688999
Q ss_pred HHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 302 LVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 302 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
.+..+|...|++++|.+.++...++.+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999887653
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.6e-23 Score=169.43 Aligned_cols=305 Identities=11% Similarity=0.065 Sum_probs=257.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
++..+..+...+...|++++|...|+.+.+.. |.+..++..+..++...|++++|...++++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 56778889999999999999999999999876 77889999999999999999999999999998743 36688999999
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCC---CCcccHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCccCHHhH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFN---PPVRGRDLL------------VQGLLNAGYLESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
++...|++++|...++...+.. + .+...+..+ ...+...|++++|.+.++++.+.... +...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHH
Confidence 9999999999999999998864 2 244445444 57889999999999999999987543 77889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH---------
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA--------- 231 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 231 (329)
..+..++...|++++|...+++..+..+ .+..++..+...+...|++++|...+++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 9999999999999999999999988754 56788999999999999999999999999876432 333332
Q ss_pred ---HHHHHHHccCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 020193 232 ---PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR----PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVT 304 (329)
Q Consensus 232 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 304 (329)
.+...+...|++++|...++++...... +. ..+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2366789999999999999999886322 33 234557788999999999999999998764 34688999999
Q ss_pred HHHHhCCchhHHHHHHHHHhhhcc
Q 020193 305 DGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
.++.+.|++++|.+.++...++.+
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999887754
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.6e-23 Score=176.99 Aligned_cols=293 Identities=12% Similarity=0.021 Sum_probs=244.5
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.++|+.+.+.. +.++..+..+..++...|++++|...|+.+.+.+ |.+..++..+..++.+.|++++|.+.|+++.+.
T Consensus 46 ~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 123 (450)
T 2y4t_A 46 LSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34556665543 5678999999999999999999999999999887 778999999999999999999999999999876
Q ss_pred CCccCh---HHHHHH------------HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 020193 82 GFVPDK---RTYAIL------------VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVN 146 (329)
Q Consensus 82 ~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 146 (329)
... +. ..+..+ ...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.++
T Consensus 124 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 124 NPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLK 201 (450)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 422 33 455555 445889999999999999998865 5677889999999999999999999999
Q ss_pred HHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHH------------HHHHHhcCCHHHHHHH
Q 020193 147 KMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL------------IPAVSKAGMIDEAFRL 214 (329)
Q Consensus 147 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~ 214 (329)
++.+... .+..++..+..++...|++++|...|+++....+ .+...+..+ ...+.+.|++++|...
T Consensus 202 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 202 AASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988743 3788999999999999999999999999987643 334444444 7889999999999999
Q ss_pred HHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 215 LHNLVEDGHKPF----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 215 ~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
|+++.+.... + ...+..+...+.+.|++++|...++++.... +.+...|..+..+|...|++++|...++++.+
T Consensus 280 ~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 280 YESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999875322 2 3478889999999999999999999998763 44788999999999999999999999999987
Q ss_pred CCCCCC-hhhHHHHH
Q 020193 291 MGLTPI-SRCFDLVT 304 (329)
Q Consensus 291 ~~~~p~-~~~~~~l~ 304 (329)
.. |+ ...+..+.
T Consensus 358 ~~--p~~~~~~~~l~ 370 (450)
T 2y4t_A 358 HN--ENDQQIREGLE 370 (450)
T ss_dssp TS--SSCHHHHHHHH
T ss_pred hC--cchHHHHHHHH
Confidence 53 44 55666665
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.4e-23 Score=177.87 Aligned_cols=316 Identities=11% Similarity=-0.017 Sum_probs=174.4
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
+.++.+.+.+ |++..+..+..++.+.|++++|...++.+.+.+ |.+..++..+..++...|++++|...|+++...+
T Consensus 27 ~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 27 KYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555565554 688888888888888899999999998888876 6777888888888888888888888888776554
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 020193 83 FVP----------------------------------------------------------------------------- 85 (329)
Q Consensus 83 ~~~----------------------------------------------------------------------------- 85 (329)
...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (514)
T 2gw1_A 104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183 (514)
T ss_dssp SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence 210
Q ss_pred -ChHHHHHHHHHHHh---cCchhHHHHHHHHHHh-----CCC--------CCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 020193 86 -DKRTYAILVNAWCS---SGKMREAQEFLQEMSD-----KGF--------NPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148 (329)
Q Consensus 86 -~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (329)
+...+......+.. .|++++|...++++.+ ..- +.+..++..+...+...|++++|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01112222222222 5666666666666655 210 112344555556666666666666666665
Q ss_pred HHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH--------------------------
Q 020193 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAV-------------------------- 202 (329)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------- 202 (329)
.+.... ...+..+..++...|++++|...++++....+ .+...+..+...+
T Consensus 264 l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (514)
T 2gw1_A 264 IELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340 (514)
T ss_dssp HHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH
T ss_pred HhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH
Confidence 554322 44445555555555555555555555444322 2333444444444
Q ss_pred --------HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC-CC----hhhHHHHH
Q 020193 203 --------SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP-PN----RPVYTMLI 269 (329)
Q Consensus 203 --------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 269 (329)
...|++++|...++++.+... .+...+..+...+...|++++|...++++...... ++ ...+..+.
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 444555555555544443321 13344444555555555555555555554432110 01 11455555
Q ss_pred HHHhc---cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 270 TMCGR---GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 270 ~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
.++.. .|++++|...++.+.+.. +.+...+..+..++.+.|++++|.+.++...++
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 55555 555555555555555432 223445555555555555555555555554443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-22 Score=164.75 Aligned_cols=296 Identities=8% Similarity=0.009 Sum_probs=251.4
Q ss_pred CCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 12 NLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 12 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
+.+.++..+..+...+...|++++|.++|+.+.+.+ |.+...+..++.++...|++++|...++++.+... .+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 345677888899999999999999999999999876 77778888889999999999999999999998753 3677899
Q ss_pred HHHHHHHhcC-chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 92 ILVNAWCSSG-KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 92 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
.+...+...| ++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998875 456788999999999999999999999999987543 567778899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHccCC
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--------HKPFPSLYAPIIKGMFRRGQ 242 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 242 (329)
|++++|...+++..+..+ .+...+..+...+...|++++|...++++.+.. ...+..++..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 999999999999988754 567889999999999999999999999987641 13345688999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhCCchh
Q 020193 243 FDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGL-KNCGKHD 314 (329)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~ 314 (329)
+++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 999999999998873 3467889999999999999999999999988654 33577888888888 4556544
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.7e-22 Score=170.25 Aligned_cols=302 Identities=14% Similarity=0.040 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...+......+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.++ .+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 4567788899999999999999999999876 6899999999999999999999999999998753 367889999999
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCc------------------------------------------------------
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPV------------------------------------------------------ 122 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------------------------------ 122 (329)
+...|++++|...|+.+...+ +++.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999997765 2221
Q ss_pred -------------------------ccHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------ccCHHhHH
Q 020193 123 -------------------------RGRDLLVQGLLN---AGYLESAKQMVNKMIK-----QGF--------VLDLETFN 161 (329)
Q Consensus 123 -------------------------~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 161 (329)
..+......+.. .|++++|...++++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 122222233333 7999999999999987 311 22356788
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (329)
.+...+...|++++|...++++.+..+. ...+..+..++...|++++|...++++.+... .+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence 8889999999999999999999887654 88899999999999999999999999988643 36778899999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998863 3367788999999999999999999999998754 3357789999999999999999999998
Q ss_pred HHhhhc
Q 020193 322 LEVSLR 327 (329)
Q Consensus 322 ~~~~~~ 327 (329)
......
T Consensus 397 ~a~~~~ 402 (514)
T 2gw1_A 397 LAIELE 402 (514)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 876643
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.3e-21 Score=167.52 Aligned_cols=318 Identities=14% Similarity=0.019 Sum_probs=230.4
Q ss_pred hHHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 2 WKTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 2 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.+.++.+.+.. |.++..+..+..++.+.|++++|.+.|+++.+.+ |.+..++..+..++...|++++|...|+.+...
T Consensus 45 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 122 (537)
T 3fp2_A 45 IKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLN 122 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 34555555544 5578888899999999999999999999988876 677888888888888888888888776422100
Q ss_pred --------------------------------------------------------------------------------
Q 020193 82 -------------------------------------------------------------------------------- 81 (329)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (329)
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------CCccC--------hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH
Q 020193 82 ---------------------------GFVPD--------KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD 126 (329)
Q Consensus 82 ---------------------------~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 126 (329)
...|+ ..++..+...+...|++++|...++...+.. |+...+.
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 280 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYI 280 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHH
Confidence 01111 1134445556667777788888888777654 4566777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
.+...+...|++++|...++++.+.... +..++..+...+...|++++|...+++..+..+ .+...+..+..++...|
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 7777788888888888888887776433 567778888888888888888888888877653 34567777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-----CCChhhHHHHHHHHhcc------
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-----PPNRPVYTMLITMCGRG------ 275 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~------ 275 (329)
++++|...++++.+... .+...+..+...+...|++++|...++++.+... ......+.....++...
T Consensus 359 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 88888888888776643 2556777788888888888888888888765421 11112233444566666
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 276 ----GRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 276 ----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++...++.
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888887654 3457788889999999999999999988877764
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-21 Score=158.91 Aligned_cols=274 Identities=13% Similarity=0.039 Sum_probs=236.4
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
+.+...+..+...+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 56677888899999999999999999999998753 355677778889999999999999999998865 5567889999
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 129 VQGLLNAG-YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 129 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
...+...| ++++|.+.+++..+.... +...+..+...+...|++++|...+++..+..+ .+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999987533 677899999999999999999999999988754 346677779999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC--------CCCChhhHHHHHHHHhccCCHH
Q 020193 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG--------HPPNRPVYTMLITMCGRGGRFV 279 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 279 (329)
+++|...++++.+... .+...+..+...+...|++++|...++++.... .+.+..++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999988753 367889999999999999999999999988652 1344678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 280 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
+|...+++..+.. +.+...+..+..++.+.|++++|.+.++...++.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 9999999998764 34678899999999999999999999998877653
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.6e-21 Score=155.24 Aligned_cols=299 Identities=11% Similarity=0.015 Sum_probs=243.3
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
+.++...+.. |.++..+..+...+...|++++|...|+.+.+.. |.+...+..+...+...|++++|...|++..+..
T Consensus 24 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 101 (359)
T 3ieg_A 24 SQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN 101 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 4455555543 4578899999999999999999999999999876 6688999999999999999999999999998764
Q ss_pred Cc--cChHHHHHH------------HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 020193 83 FV--PDKRTYAIL------------VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKM 148 (329)
Q Consensus 83 ~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 148 (329)
.. .+...+..+ ...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 102 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 102 PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 30 244445444 578899999999999999998875 567788999999999999999999999999
Q ss_pred HHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHH------------HHHHHHHhcCCHHHHHHHHH
Q 020193 149 IKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYK------------ILIPAVSKAGMIDEAFRLLH 216 (329)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~ 216 (329)
.+... .+..++..+...+...|++++|...+++..+..+ .+...+. .+...+.+.|++++|...++
T Consensus 181 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 181 SKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp HTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98753 3788999999999999999999999999987654 2333332 23667889999999999999
Q ss_pred HHHhCCCCCCh----hhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 217 NLVEDGHKPFP----SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 217 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
++.+.... +. ..+..+...+...|++++|...+++..+. .+.+..++..+..++...|++++|...+++..+..
T Consensus 259 ~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 259 SVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99876433 22 23556778999999999999999999886 34478899999999999999999999999999764
Q ss_pred CCCChhhHHHHHHHHHh
Q 020193 293 LTPISRCFDLVTDGLKN 309 (329)
Q Consensus 293 ~~p~~~~~~~l~~~~~~ 309 (329)
+-+...+..+..+...
T Consensus 337 -p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 337 -ENDQQIREGLEKAQRL 352 (359)
T ss_dssp -TTCHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHH
Confidence 2235566666555443
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=7.7e-22 Score=162.28 Aligned_cols=292 Identities=11% Similarity=0.014 Sum_probs=231.2
Q ss_pred HHccCchhHHHH-HHHHhhhcCC---CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 27 FGKHGLVDNAVE-VFNKCTAFNC---QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 27 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
+.-.|++++|.+ .|++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 8887664431 1135668889999999999999999999999875 3477889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHH---------------HHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS---------------LIETI 167 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~ 167 (329)
+++|...++++.+.. +.+..++..+..++...|++++|...++++.+.... +...+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999998875 557888999999999999999999999999987533 2222221 23334
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 020193 168 CKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDA 246 (329)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 246 (329)
...|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998865432 578899999999999999999999999987643 3578899999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC----------ChhhHHHHHHHHHhCCchhHH
Q 020193 247 FCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP----------ISRCFDLVTDGLKNCGKHDLA 316 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a 316 (329)
...++++.... +.+...+..+..++.+.|++++|...++++.+..... ...+|..+..++.+.|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998863 4467889999999999999999999999988532111 267899999999999999999
Q ss_pred HHHHHHH
Q 020193 317 EKIELLE 323 (329)
Q Consensus 317 ~~~~~~~ 323 (329)
..+++..
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9987643
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=2.6e-21 Score=159.06 Aligned_cols=268 Identities=12% Similarity=-0.010 Sum_probs=177.8
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 345566677777777777777777777776542 356667777777777777777777777776654 344666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCcc---------CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-chhhHHHHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVL---------DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIP 200 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 200 (329)
+|...|++++|...++++.+..... ....+..+...+...|++++|...++++.+..+.. +..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777777776653110 11222334667777788888888888777664321 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 020193 201 AVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVE 280 (329)
Q Consensus 201 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 280 (329)
.+...|++++|...++++.+... .+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 78888888888888887776543 256677778888888888888888888777652 3356777777788888888888
Q ss_pred HHHHHHHHHhCCCC-----------CChhhHHHHHHHHHhCCchhHHHHHHHH
Q 020193 281 AANYLVEMTEMGLT-----------PISRCFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 281 a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
|...++++.+.... .+...|..+..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88888777642211 1356778888888888888887776554
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.3e-20 Score=162.70 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=244.7
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
....+..+...+.+.|++++|+..|+++.+.+ |.+..+|..+..++.+.|++++|.+.|+++.+.+. .+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 35678888999999999999999999999887 78899999999999999999999999999998753 37788999999
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCC------------------------------------CCcc----------------
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFN------------------------------------PPVR---------------- 123 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~---------------- 123 (329)
++...|++++|...|+.+....-. |+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999999644211100 0000
Q ss_pred --------------cHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCccCH-------HhHHHHHHHHHccCCHH
Q 020193 124 --------------GRDLLVQGLL--------NAGYLESAKQMVNKMIKQGFVLDL-------ETFNSLIETICKSGEVE 174 (329)
Q Consensus 124 --------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~ 174 (329)
....+...+. ..|++++|..+++++.+.... +. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 124788999999998876432 22 34667778888999999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
+|...+++..+.. |+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998865 45788889999999999999999999999876533 67889999999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 255 IKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
... +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...++.
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 873 3356789999999999999999999999998764 3457789999999999999999999998876653
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=8.5e-22 Score=161.94 Aligned_cols=265 Identities=11% Similarity=0.010 Sum_probs=219.8
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+.+.|++++|...|+.+.+.. |.+..+|..+...+...|++++|...|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568889999999999999999999999877 77899999999999999999999999999998753 36789999999
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHH----------HHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHhHHHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL----------LVQGLLNAGYLESAKQMVNKMIKQGFV-LDLETFNSLI 164 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 164 (329)
++...|++++|...++++.+.. +.+...+.. +...+...|++++|...++++.+.... ++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998764 223334433 377889999999999999999987433 1678999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 020193 165 ETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFD 244 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 244 (329)
..+...|++++|.+.+++..+..+ .+..++..+..+|...|++++|...|+++.+.... +..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 999999999999999999988754 56789999999999999999999999999886432 5788999999999999999
Q ss_pred HHHHHHHHHHHcCCC-----------CChhhHHHHHHHHhccCCHHHHHHHH
Q 020193 245 DAFCFFSEMKIKGHP-----------PNRPVYTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 245 ~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (329)
+|...|+++.+.... .+...|..+..++...|+.+.+.++.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999875211 13577888999999999988777653
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=1.1e-20 Score=155.45 Aligned_cols=267 Identities=13% Similarity=0.038 Sum_probs=226.5
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+.+.|++++|...|+.+.+.. |.+..++..+..++...|++++|...|+++.+... .+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 35668889999999999999999999999886 77899999999999999999999999999998753 37889999999
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHH---------------HHHHHHhcCChHHHHHHHHHHHHcCCcc-CHHh
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDL---------------LVQGLLNAGYLESAKQMVNKMIKQGFVL-DLET 159 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 159 (329)
++...|++++|...++++.... +.+...+.. .+..+...|++++|...++++.+..... +..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 9999999999999999998865 233333321 2334448999999999999998874332 5788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 020193 160 FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR 239 (329)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 239 (329)
+..+...+...|++++|...+++.....+ .+..++..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 99999999999999999999999988654 4578899999999999999999999999987643 367889999999999
Q ss_pred cCChhHHHHHHHHHHHcCCC----------CChhhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 240 RGQFDDAFCFFSEMKIKGHP----------PNRPVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
.|++++|...++++...... ....+|..+..++...|++++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999998865211 1267899999999999999999998764
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=1.6e-20 Score=151.72 Aligned_cols=265 Identities=10% Similarity=-0.049 Sum_probs=157.0
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+...|++++|..+|+.+.+.. |.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34556777888888899999999998888766 6678888888888888899999999988888764 336677888888
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCccCHHhH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL--------------VQ-GLLNAGYLESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
.+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|.+.++++.+.... +...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence 8888888888888888887764 2233333333 11 244455555555555555554322 44455
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHh
Confidence 5555555555555555555555554432 2344455555555555555555555555444321 1344444455555555
Q ss_pred CChhHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHhccCCHHHHHHHHH
Q 020193 241 GQFDDAFCFFSEMKIKGHPP-----------NRPVYTMLITMCGRGGRFVEAANYLV 286 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~ 286 (329)
|++++|...++++....... +...+..+..++...|++++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555555544331110 23344444445555555555544443
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=1.6e-20 Score=151.77 Aligned_cols=268 Identities=12% Similarity=-0.025 Sum_probs=224.1
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 455677888899999999999999999998753 377888999999999999999999999998875 556788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHH--------------HH-HHHccCCHHHHHHHHHHHHHcCCCCchhhH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL--------------IE-TICKSGEVEFCVEMYYSVCKLGLCADVSTY 195 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 195 (329)
.+...|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.+..+ .+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHH
Confidence 999999999999999999987433 33333333 22 37788999999999999988754 467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 020193 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275 (329)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (329)
..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999987643 367889999999999999999999999998763 44678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----------ChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 276 GRFVEAANYLVEMTEMGLTP-----------ISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 276 ~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
|++++|.+.++++.+..... +...+..+..++.+.|++++|.++++...
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999988654221 47789999999999999999998876443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=4.9e-19 Score=140.28 Aligned_cols=276 Identities=9% Similarity=0.068 Sum_probs=214.2
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
++.....|+++.|+..++........+.......+.++|...|+++.|+..++. .-+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 455667899999999998876654112234667788999999999999987754 2356778888999999999999
Q ss_pred hHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998776434 556677778999999999999999987 35778899999999999999999999999
Q ss_pred HHHcCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 020193 183 VCKLGLCADVSTY---KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP 259 (329)
Q Consensus 183 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (329)
+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++.... +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98865 443211 223344445689999999999998874 4578889999999999999999999999998873 4
Q ss_pred CChhhHHHHHHHHhccCCHHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHH
Q 020193 260 PNRPVYTMLITMCGRGGRFVE-AANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 260 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
.+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHH
Confidence 477889999999999999876 578988888654 44322 2334555566666543
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=6.4e-19 Score=139.62 Aligned_cols=256 Identities=10% Similarity=0.060 Sum_probs=206.3
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (329)
++.....|+++.|+..++........+.......+.++|...|+++.|+..++. . -+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 455667899999999988765433222234556778999999999999986644 2 356777888899999999999
Q ss_pred HHHHHHHHHHHHcCCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 139 ESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 139 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998876544 566677778999999999999999987 36778899999999999999999999999
Q ss_pred HHhCCCCCChhhH---HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 020193 218 LVEDGHKPFPSLY---APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLT 294 (329)
Q Consensus 218 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 294 (329)
+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98864 443211 12334445568999999999999987 56688899999999999999999999999998765 3
Q ss_pred CChhhHHHHHHHHHhCCchhH-HHHHHHHHhhhcc
Q 020193 295 PISRCFDLVTDGLKNCGKHDL-AEKIELLEVSLRS 328 (329)
Q Consensus 295 p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 328 (329)
-+..++..++..+...|+.++ +.++++...++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 468889999999999999976 5688887776653
No 25
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=165.45 Aligned_cols=150 Identities=12% Similarity=0.117 Sum_probs=99.3
Q ss_pred HHhHHHHHHHHHccCCHHHHHHHHHHHH---HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 020193 157 LETFNSLIETICKSGEVEFCVEMYYSVC---KLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPI 233 (329)
Q Consensus 157 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 233 (329)
..+|+++|.+|++.|++++|.++|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4567777777777777777777776654 3466777777777777777777777777777777777777777777777
Q ss_pred HHHHHccCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHH
Q 020193 234 IKGMFRRGQF-DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI------SRCFDLVTDG 306 (329)
Q Consensus 234 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~ 306 (329)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 7777777764 56777777777777777777777776554432 333333333 2233333 4444555555
Q ss_pred HHhCC
Q 020193 307 LKNCG 311 (329)
Q Consensus 307 ~~~~g 311 (329)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55544
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=6.8e-20 Score=148.89 Aligned_cols=267 Identities=14% Similarity=0.122 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
+++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|...++...+. .+++.+.+.++
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li 101 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 101 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence 4567999999999999999999999965 357779999999999999999999977766653 44677889999
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHH
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (329)
.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|..++.++.+.|+++
T Consensus 102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence 99999999999888874 367789999999999999999999999976 47899999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
+|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|.+++|..+++...
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999987 3688999999999999999999555443 22344556678899999999999999999988
Q ss_pred HcCCCCChhhHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhCCchhHHHHH
Q 020193 255 IKGHPPNRPVYTMLITMCGRG--GRFVEAANYLVEMTEMGLTP------ISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 255 ~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
... +-....|+-+..+|++- ++..+.++.|.. ..+++| +...|..+...|...++++.|...
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 764 45677788887777653 344444444432 234444 467899999999999999988764
No 27
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=165.33 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=116.3
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHH
Q 020193 190 ADVSTYKILIPAVSKAGMIDEAFRLLHNLVE---DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYT 266 (329)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (329)
.-..||+++|.+|++.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHH
Q 020193 267 MLITMCGRGGR-FVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEK 318 (329)
Q Consensus 267 ~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 318 (329)
++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+.+-++...+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 99999999998 47899999999999999999999988877666554444433
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.1e-17 Score=128.75 Aligned_cols=223 Identities=14% Similarity=0.095 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cC----hHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PD----KRTYA 91 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 91 (329)
..+..+...+...|++++|...|+.+.+.. .+..++..+..++...|++++|.+.+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555556666666666666666665554 45555666666666666666666666555543211 01 34455
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
.+..++...|++++|...+++..+.. |+ ...+.+.|++++|...++++...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~-------------------- 134 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYV-------------------- 134 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHc--------------------
Confidence 55555555555555555555555432 22 12333444445555555544443
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFS 251 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 251 (329)
.+ .+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus 135 ---------------~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 135 ---------------NP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp ---------------CH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------Cc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 21 22334444444444555555555555544443221 34444445555555555555555555
Q ss_pred HHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 252 EMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
++.+.. +.+...+..+..++...|++++|...+++..
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554432 2234445555555555555555555555544
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=6.6e-18 Score=128.10 Aligned_cols=198 Identities=15% Similarity=0.051 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
|+++..+..+...+.+.|++++|...|+...+.+ |.+...+..+..++.+.|++++|...|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 5667777777777788888888888888877766 667777777777888888888888888777766422 55666677
Q ss_pred HHHHHhc-----------CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHH
Q 020193 94 VNAWCSS-----------GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNS 162 (329)
Q Consensus 94 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 162 (329)
..++... |++++|...+++..+.. |.+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777666 55555555555555443 2234444555555555555555555555555544 34445555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
+..++...|++++|...|++..+..+ .+...+..+..++...|++++|...+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555544332 2334444444455555555555554444
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.4e-15 Score=128.38 Aligned_cols=287 Identities=14% Similarity=0.023 Sum_probs=155.4
Q ss_pred CHHHHHHHHHHHHc----cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHHHHcCCccCh
Q 020193 16 SPQTLSLIIEEFGK----HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE----VKLFHGAYALIRRMIRKGFVPDK 87 (329)
Q Consensus 16 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 87 (329)
++..+..|...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 147 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RD 147 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34455555555555 555555555555555433 33444444445544 445555555555554443 23
Q ss_pred HHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-----------------------------
Q 020193 88 RTYAILVNAWCS----SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN----------------------------- 134 (329)
Q Consensus 88 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------------------- 134 (329)
..+..+...|.. .+++++|.+.|++..+.+ +...+..+...|..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence 334444444443 444555555555444432 23344444444444
Q ss_pred -----------cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 020193 135 -----------AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGLCADVSTYKILI 199 (329)
Q Consensus 135 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 199 (329)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg 298 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLA 298 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence 444555555555444432 23334444444444 455555555555554432 233444555
Q ss_pred HHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 020193 200 PAVSKA-----GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG---QFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271 (329)
Q Consensus 200 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (329)
..|... +++++|...|++..+.+ +...+..+...|...| ++++|..+|++..+. .+...+..+...
T Consensus 299 ~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~ 372 (490)
T 2xm6_A 299 HLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNA 372 (490)
T ss_dssp HHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 555554 56666666666665543 3344555555555544 566677777766665 245666666666
Q ss_pred Hhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCchhHHHHHHHHHhhh
Q 020193 272 CGR----GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIELLEVSL 326 (329)
Q Consensus 272 ~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 326 (329)
|.. .+++++|..+|++..+.+ +...+..|...|.+ .+++++|.+.++...+.
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 666 677777777777777654 35566667777766 67777777777766654
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.5e-17 Score=128.29 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cC----HHhHH
Q 020193 88 RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV--LD----LETFN 161 (329)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 161 (329)
..+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666665554 45556666666666666666666666665554211 11 46677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 020193 162 SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241 (329)
Q Consensus 162 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (329)
.+..++...|++++|...+++..... |+. ..+...|++++|...++.+..... .+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence 77777778888888888888777643 332 346677889999999999888643 25677888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
++++|...++++.... +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998873 4478889999999999999999999999998765 3458889999999999999999999999
Q ss_pred HHhhhc
Q 020193 322 LEVSLR 327 (329)
Q Consensus 322 ~~~~~~ 327 (329)
...++.
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887765
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=6.6e-15 Score=125.66 Aligned_cols=294 Identities=12% Similarity=0.047 Sum_probs=210.8
Q ss_pred HHhhhhhCCCCCCHHHHHHHHHHHHc----cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh----cchHHHHHHHH
Q 020193 4 TIELMKPYNLSVSPQTLSLIIEEFGK----HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE----VKLFHGAYALI 75 (329)
Q Consensus 4 ~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~ 75 (329)
.+....+.| ++..+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|
T Consensus 29 ~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 102 (490)
T 2xm6_A 29 QLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWY 102 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 344444444 78888889999988 899999999999998865 67788889999998 89999999999
Q ss_pred HHHHHcCCccChHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHH
Q 020193 76 RRMIRKGFVPDKRTYAILVNAWCS----SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN----AGYLESAKQMVNK 147 (329)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 147 (329)
++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++
T Consensus 103 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 103 KKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9998875 56677788888888 789999999999998876 56778888888887 7899999999999
Q ss_pred HHHcCCccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 020193 148 MIKQGFVLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK----AGMIDEAFRLLHNLV 219 (329)
Q Consensus 148 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 219 (329)
..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 98875 67778888888877 788999999998887754 34556666666665 667777777777766
Q ss_pred hCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc-----CCHHHHHHHHHHHHh
Q 020193 220 EDGHKPFPSLYAPIIKGMFR----RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG-----GRFVEAANYLVEMTE 290 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~ 290 (329)
+.+ +...+..+...|.. .+++++|..+|++..+.| +...+..+...|... +++++|..++++..+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 653 34445555555555 566666666666665542 334445555555544 566666666665555
Q ss_pred CCCCCChhhHHHHHHHHHhCC---chhHHHHHHHHHh
Q 020193 291 MGLTPISRCFDLVTDGLKNCG---KHDLAEKIELLEV 324 (329)
Q Consensus 291 ~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~ 324 (329)
.+ +...+..+...|...| ++++|.+.++...
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 43 2234444444444433 4455555544443
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=2.1e-17 Score=125.38 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=94.2
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
|++...+..+...+.+.|++++|...|++..+..+ .+...+..+..++.+.|++++|...+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45556666666666666666666666666665432 245556666666666666666666666666553 3344555555
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 020193 129 VQGLLNA-----------GYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKI 197 (329)
Q Consensus 129 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 197 (329)
..++... |++++|...+++..+..+. +...+..+..++...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 5555555 4555555555444444222 33444444444444444444444444444433 33444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
+..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444444444444444444444433211 333344444444444444444444443
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=3.2e-19 Score=144.95 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=107.9
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6688999999999982 235999999999999999999999965 2577799999999999999999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877764 3557889999999999999999998885 367789999999999999999999999976
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 020193 189 CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTML 268 (329)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (329)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47999999999999999999999988 27899999999999999999997655542 2344446678
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC
Q 020193 269 ITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNC 310 (329)
Q Consensus 269 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 310 (329)
+..|.+.|++++|..+++...... +-....|..|.-+|++-
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence 899999999999999999987544 34567788877777764
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-15 Score=129.66 Aligned_cols=309 Identities=11% Similarity=0.015 Sum_probs=224.2
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc--------CCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcC---
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--------NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKG--- 82 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 82 (329)
+.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344678999999999999999999999987542 123456789999999999999999999998876531
Q ss_pred ---Cc-cChHHHHHHHHHHHhc--CchhHHHHHHHHHHhCCCCCCcccHHHHHHH---HHhcCChHHHHHHHHHHHHcCC
Q 020193 83 ---FV-PDKRTYAILVNAWCSS--GKMREAQEFLQEMSDKGFNPPVRGRDLLVQG---LLNAGYLESAKQMVNKMIKQGF 153 (329)
Q Consensus 83 ---~~-~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 153 (329)
.. ....++.....++... +++++|...|++..+.. |.++..+..+..+ +...++.++|++.+++..+...
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 11 1345666665555544 57999999999998865 3345555555554 3456788899999999888753
Q ss_pred ccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 020193 154 VLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229 (329)
Q Consensus 154 ~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 229 (329)
. +..++..+...+.. .+++++|.+.+++.....+ .+..++..+...|...|++++|...+++..+..+. +..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3 56666666555544 4678899999999887654 56778889999999999999999999999886433 5566
Q ss_pred HHHHHHHHHcc-------------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 230 YAPIIKGMFRR-------------------GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 230 ~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
+..+...|... +.++.|...++...... +.+...+..+...+...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 23567778888877663 34667888999999999999999999999987
Q ss_pred CCCCCChh--hHHHHHH-HHHhCCchhHHHHHHHHHhhhc
Q 020193 291 MGLTPISR--CFDLVTD-GLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 291 ~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
....|... .+..+.. .....|++++|.+.++...++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 65443321 2333332 3457899999999988877654
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=2e-17 Score=130.22 Aligned_cols=221 Identities=9% Similarity=-0.082 Sum_probs=116.7
Q ss_pred ccCchhHHHHHHHHhhhcCC---CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhH
Q 020193 29 KHGLVDNAVEVFNKCTAFNC---QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (329)
..|++++|+..|+.+.+... +.+..++..+...+...|++++|...|+++.+... .+..++..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 34666777777777665421 22455666666677777777777777776666532 245566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 106 AQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 106 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
|...+++..+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666666543 3345556666666666666666666666666542 2222222333333444555555555555444
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 186 LGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
... ++...+ .++..+...++.++|...++...+..... +...+..+...+...|++++|...|+++..
T Consensus 173 ~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 322 222222 24444444455555555555443321100 023344444444444444444444444443
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=1.1e-16 Score=125.81 Aligned_cols=165 Identities=18% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--hHHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--KRTYAILVN 95 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 95 (329)
..+......+...|++++|+..|+.+.+.. |.+...+..+..++...|++++|.+.+++..+.+..|+ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 334444555555666666666666655544 34444555555555555555555555555554221111 122445555
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (329)
.+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+... .+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432 22334445555555555555555555555444321 133334333312222234444
Q ss_pred HHHHHHHHHH
Q 020193 176 CVEMYYSVCK 185 (329)
Q Consensus 176 a~~~~~~~~~ 185 (329)
|.+.+++..+
T Consensus 161 A~~~~~~a~~ 170 (272)
T 3u4t_A 161 ADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=4.6e-15 Score=116.67 Aligned_cols=223 Identities=13% Similarity=0.010 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh----cchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE----VKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
++.++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666666666777777777777766663 244556666666666 667777777776666654 455566
Q ss_pred HHHHHHHh----cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHhHHHH
Q 020193 92 ILVNAWCS----SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGFVLDLETFNSL 163 (329)
Q Consensus 92 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (329)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666553 45556666666666 666666666666666553 34455555
Q ss_pred HHHHHc----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 020193 164 IETICK----SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK----AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIK 235 (329)
Q Consensus 164 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 235 (329)
...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 555555 566666666666655542 23445555555555 566666666666655543 1344455555
Q ss_pred HHHc----cCChhHHHHHHHHHHHc
Q 020193 236 GMFR----RGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 236 ~~~~----~~~~~~a~~~~~~~~~~ 256 (329)
.|.. .+++++|...|++..+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5555 55666666666555554
No 39
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=8.1e-15 Score=126.35 Aligned_cols=183 Identities=12% Similarity=0.025 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD-VSTYKILIPAVSKAGMIDEAFRLLHNL 218 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 218 (329)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+ .+ ...|...+..+.+.|++++|..+|++.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5666666655421122455666666666666666666666666665322 11 235666666666666666666666666
Q ss_pred HhCCCCCChhhHHHHHHH-HHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC
Q 020193 219 VEDGHKPFPSLYAPIIKG-MFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGL-TPI 296 (329)
Q Consensus 219 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~ 296 (329)
.+... .+...|...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+
T Consensus 383 l~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 55421 122222221111 224666777777776666542 23456666666666667777777777777665432 222
Q ss_pred --hhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 297 --SRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 297 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
...|...+......|+.+.+.++...+.+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33566666666666777777766665544
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=4.6e-16 Score=127.36 Aligned_cols=230 Identities=11% Similarity=0.091 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch-HHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
...|..+...+.+.|++++|+..|+++.+.+ |.+..+|+.+..++...|+ +++|+..|++....... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3556667777777777777777777777766 6667777777777777775 77777777777776433 5667777777
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc-cCCHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK-SGEVE 174 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 174 (329)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777777664 445667777777777777777777777777776543 56677777777766 44435
Q ss_pred HH-----HHHHHHHHHcCCCCchhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC------
Q 020193 175 FC-----VEMYYSVCKLGLCADVSTYKILIPAVSKAG--MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG------ 241 (329)
Q Consensus 175 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 241 (329)
+| +..+++.....+ -+...|..+...+...| ++++|...+.++ +.. ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 55 355666555433 34455666666665555 456666666555 221 223445555555555542
Q ss_pred ---ChhHHHHHHHHH
Q 020193 242 ---QFDDAFCFFSEM 253 (329)
Q Consensus 242 ---~~~~a~~~~~~~ 253 (329)
..++|..+++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 135566666665
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=5.5e-16 Score=121.76 Aligned_cols=243 Identities=10% Similarity=-0.014 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCccc----HHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG----RDL 127 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 127 (329)
...+......+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+.+ ++... |..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHH
Confidence 344556677778888888888888888776432 45567777778888888888888888887733 33333 677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
+...+...|++++|...+++..+.... +..++..+...+...|++++|...+++..+..+ .+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHH
Confidence 788888888888888888888776433 566777888888888888888888887766532 345566666623344458
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHhccCC
Q 020193 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ---FDDAFCFFSEMKIKG-HPPN------RPVYTMLITMCGRGGR 277 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~ 277 (329)
+++|...|+++.+.... +...+..+...+...|+ +++|...++++.+.. -.|+ ..+|..+...|...|+
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCC
Confidence 88888888887765422 45666667777777777 777888777776541 1123 1466667777777888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHH
Q 020193 278 FVEAANYLVEMTEMGLTPISRCFDL 302 (329)
Q Consensus 278 ~~~a~~~~~~~~~~~~~p~~~~~~~ 302 (329)
+++|.+.+++..+. .|+......
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~a~~ 259 (272)
T 3u4t_A 237 KVKADAAWKNILAL--DPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHHhc--CccHHHHHH
Confidence 88888888877754 366554433
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.2e-15 Score=127.01 Aligned_cols=309 Identities=11% Similarity=-0.047 Sum_probs=212.5
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC-------CCccHHHHHHHHHHHHh--cchHHHHHHHHHHHHHcCCcc
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN-------CQQCVLLYNSLLFALCE--VKLFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~ 85 (329)
....+|+.+..+|...|++++|...+++..+.. .+....+++.+..++.. .+++++|.+.|++..+..+.
T Consensus 92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~- 170 (472)
T 4g1t_A 92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK- 170 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-
Confidence 345789999999999999999999998875421 12235667666655554 45799999999999886432
Q ss_pred ChHHHHHHHHH---HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHH
Q 020193 86 DKRTYAILVNA---WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGFVLDLE 158 (329)
Q Consensus 86 ~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 158 (329)
+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.. .|++++|.+.+++....... +..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHH
Confidence 45555555544 345677888999999888765 3455566666555544 46788999999998887543 678
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-------------------CCHHHHHHHHHHHH
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA-------------------GMIDEAFRLLHNLV 219 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~ 219 (329)
++..+...|...|++++|...+++..+..+ .+..++..+..+|... +..+.|...++...
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 899999999999999999999999988654 3456666666555432 33567788888877
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChh--hHHHHHH-HHhccCCHHHHHHHHHHHHhCCC---
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRP--VYTMLIT-MCGRGGRFVEAANYLVEMTEMGL--- 293 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--- 293 (329)
+... .+...+..+...+...|++++|...|++..+....|... .+..+.. .....|++++|+..+++..+...
T Consensus 328 ~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 328 EAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred hcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 6543 356778889999999999999999999998864333221 2233332 23467899999998888765321
Q ss_pred --------------------CCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhcc
Q 020193 294 --------------------TPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLRS 328 (329)
Q Consensus 294 --------------------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 328 (329)
+.+..+|..+..+|...|++++|.+.++...++.+
T Consensus 407 ~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 407 EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 33567899999999999999999999998887653
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.77 E-value=1e-15 Score=118.79 Aligned_cols=201 Identities=12% Similarity=-0.036 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4566666677777777777777777766653 2255666667777777777777777777776653 3355666667777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (329)
+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776622233 345666677777777777777777777766543 345667777777777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
|...++++.+... .+...+..+...+...|++++|...++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777766532 35566667777777777777777777777765
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.77 E-value=3.9e-16 Score=127.83 Aligned_cols=250 Identities=10% Similarity=0.040 Sum_probs=207.5
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc-hhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK-MREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
+...|+.+...+...|++++|++.+++.+..... +...|+.+..++...|+ +++|+..+++..... +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4677888999999999999999999999987533 67889999999999996 999999999999876 55788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-cCCH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK-AGMI 208 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 208 (329)
.++...|++++|+..|+++.+.... +...|..+..++...|++++|+..++++.+..+ .+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999998655 788999999999999999999999999998765 567889999999998 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-----
Q 020193 209 DEA-----FRLLHNLVEDGHKPFPSLYAPIIKGMFRRG--QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG----- 276 (329)
Q Consensus 209 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----- 276 (329)
++| ...+++..+.... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 777 5888888876543 5678888888888888 689999999888 33 3456778888999988864
Q ss_pred ----CHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHH
Q 020193 277 ----RFVEAANYLVEM-TEMGLTPISRCFDLVTDGLK 308 (329)
Q Consensus 277 ----~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~ 308 (329)
..++|.++++++ .+.. +.....|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 358999999998 6543 223556666666554
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=7.8e-15 Score=115.34 Aligned_cols=226 Identities=15% Similarity=0.036 Sum_probs=187.2
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh----cCchhHHHHHHHHHHhCCCCCCccc
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS----SGKMREAQEFLQEMSDKGFNPPVRG 124 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (329)
+.++.++..+...+...|++++|.+.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3467788888889999999999999999988733 55678888888888 999999999999988875 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCchhhHH
Q 020193 125 RDLLVQGLLN----AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGLCADVSTYK 196 (329)
Q Consensus 125 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 196 (329)
+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8888888988 999999999999988874 67788888888888 899999999999988865 456777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 020193 197 ILIPAVSK----AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR----RGQFDDAFCFFSEMKIKGHPPNRPVYTML 268 (329)
Q Consensus 197 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (329)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 78888887 889999999999888764 45677778888888 899999999999888763 36677778
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHhCC
Q 020193 269 ITMCGR----GGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 269 ~~~~~~----~~~~~~a~~~~~~~~~~~ 292 (329)
...|.. .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888887 889999999999888766
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=1.6e-15 Score=115.48 Aligned_cols=201 Identities=9% Similarity=-0.011 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
++..+..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 34555666666666666666666666665544 44555666666666666666666666666655432 24445555555
Q ss_pred HHHhc-CchhHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 96 AWCSS-GKMREAQEFLQEMSDKGFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 96 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
.+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+.... +...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 56666 66666666666555521111 1344445555555555555555555555544221 344445555555555555
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
++|...+++..+..+..+...+..+...+...|+.+.+..+++.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555554443221233334444444445555555555555444
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.76 E-value=1.2e-16 Score=123.32 Aligned_cols=200 Identities=13% Similarity=0.102 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
.+..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 33445555555566666666666666665544 44555555566666666666666666665555432 24445555555
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (329)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555443 233444445555555555555555555555444221 33444444444444444444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 176 CVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
|...+++..+... .+..++..+..++...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4444444443322 2233444444444444444444444444443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.6e-16 Score=124.95 Aligned_cols=248 Identities=8% Similarity=-0.109 Sum_probs=195.4
Q ss_pred HhcchHHHHHHHHHHHHHcCC---ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 63 CEVKLFHGAYALIRRMIRKGF---VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
...|++++|+..|+++.+... +.+..++..+...+...|++++|...+++..+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 456899999999999997632 2246788899999999999999999999998875 456888999999999999999
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 219 (329)
+|...++++.+.... +...+..+..++...|++++|...++++.+.. |+..........+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999987533 67889999999999999999999999998864 444444455556677899999999998877
Q ss_pred hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 020193 220 EDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP---PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296 (329)
Q Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 296 (329)
... +++...+ .++..+...++.++|...+......... .+...+..+..++...|++++|...+++..+.. |+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 653 2343444 4777788888999999999888754211 125778889999999999999999999998754 43
Q ss_pred hhhHHHHHHHHHhCCchhHHHHHH
Q 020193 297 SRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 333355677888899888765
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=2.8e-15 Score=114.07 Aligned_cols=204 Identities=10% Similarity=-0.037 Sum_probs=111.9
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
+.+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 34455666666666777777777777766665532 245566666666666666666666666665543 3344555556
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHcCCccC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 129 VQGLLNA-GYLESAKQMVNKMIKQGFVLD-LETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 129 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+..+ .+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcC
Confidence 6666666 666666666666555211222 34455555555555666666665555554432 23444555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
++++|...++++.+.....+...+..+...+...|+.+.+..+++.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555554432212344444444445555555555555555443
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=3e-15 Score=116.21 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4556677777777788888888887776654 345667777777777888888888888777766432 56677777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (329)
+...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 777888888888887776622223 455667777777778888888888877776542 246667777777778888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 246 AFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
|...++.+.+. .+.+...+..+...+...|++++|.++++++.+..
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 88888777664 23456667777777777788888888887777643
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.8e-16 Score=131.77 Aligned_cols=300 Identities=15% Similarity=0.015 Sum_probs=228.0
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc----HHHHHHHHHHHHhcchHHHHHHHHHHHHHc----CCcc
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC----VLLYNSLLFALCEVKLFHGAYALIRRMIRK----GFVP 85 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 85 (329)
......+......+...|++++|...|+.+.+.+ +.+ ..++..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 4566677888899999999999999999998875 444 367888999999999999999999987643 2122
Q ss_pred -ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCC--------------------hH
Q 020193 86 -DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPP----VRGRDLLVQGLLNAGY--------------------LE 139 (329)
Q Consensus 86 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 139 (329)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245788888999999999999999998865420 011 3477888899999999 99
Q ss_pred HHHHHHHHHHHc----CCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHhcCCHH
Q 020193 140 SAKQMVNKMIKQ----GFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-AD----VSTYKILIPAVSKAGMID 209 (329)
Q Consensus 140 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 209 (329)
+|...+++..+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999876543 1111 2356788889999999999999999988653211 11 347888899999999999
Q ss_pred HHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHhccCCHH
Q 020193 210 EAFRLLHNLVEDGHK-PF----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPN----RPVYTMLITMCGRGGRFV 279 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 279 (329)
+|...+++..+.... ++ ..++..+...+...|++++|...+++...... .++ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999987643111 11 45778889999999999999999998875411 111 457788889999999999
Q ss_pred HHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCchh
Q 020193 280 EAANYLVEMTEM----GLTP-ISRCFDLVTDGLKNCGKHD 314 (329)
Q Consensus 280 ~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 314 (329)
+|...+++..+. +..+ ...++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999987642 2222 2556777888888777663
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=5.1e-16 Score=119.79 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVV 103 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHH
Confidence 3333444444444444444444444332 223334444444444444444444444444443211 33444444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 020193 170 SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 170 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 249 (329)
.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554444322 2334444445555555555555555555444321 1344445555555555555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 250 FSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
++++.... +.+..++..+..++...|++++|...++++.+
T Consensus 182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55554442 22344555555555555555555555555554
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=5.2e-16 Score=129.42 Aligned_cols=271 Identities=13% Similarity=0.027 Sum_probs=158.7
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH----HHHHHHHHHHHhcchHHHHHHHHHHHHHc----C-CccChHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV----LLYNSLLFALCEVKLFHGAYALIRRMIRK----G-FVPDKRT 89 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 89 (329)
.+..+...+...|++++|...|+++.+.+ +.+. .++..+...+...|++++|...+++..+. + ......+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666677777777777777777654 3333 46667777777777777777777766543 1 1223345
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCC-----CCCCcccHHHHHHHHHhcCC-----------------hHHHHHHHHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKG-----FNPPVRGRDLLVQGLLNAGY-----------------LESAKQMVNK 147 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 147 (329)
+..+...+...|++++|...+++..+.. .+....++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6667777777777777777777664431 11123356666677777777 7777766666
Q ss_pred HHHc----CCc-cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 020193 148 MIKQ----GFV-LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-AD----VSTYKILIPAVSKAGMIDEAFRLLHN 217 (329)
Q Consensus 148 ~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 217 (329)
..+. +.. ....++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 111 12235566666677777777777777666542110 11 22556666666777777777777766
Q ss_pred HHhCCCC-----CChhhHHHHHHHHHccCChhHHHHHHHHHHHcC----C-CCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 020193 218 LVEDGHK-----PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG----H-PPNRPVYTMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 218 ~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
..+.... ....++..+...+...|++++|...+++..... . .....++..+..+|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5532110 013455566666666777777766666655431 0 01123555566666666666666666666
Q ss_pred HHh
Q 020193 288 MTE 290 (329)
Q Consensus 288 ~~~ 290 (329)
..+
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=7.2e-16 Score=128.59 Aligned_cols=276 Identities=17% Similarity=0.087 Sum_probs=212.8
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh----HHHHHHHHHHHhcCchhHHHHHHHHHHhC----C-CCCC
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDK----G-FNPP 121 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 121 (329)
....+..+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...+++..+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3455666778889999999999999999987432 33 47888899999999999999999988653 1 1223
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CccCHHhHHHHHHHHHccCC-----------------HHHHHHH
Q 020193 122 VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----G-FVLDLETFNSLIETICKSGE-----------------VEFCVEM 179 (329)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~ 179 (329)
..++..+...|...|++++|...+++..+. + ......++..+...+...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 467788899999999999999999987654 1 11234578888899999999 9999999
Q ss_pred HHHHHHc----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCChhHHHHH
Q 020193 180 YYSVCKL----GL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-PF----PSLYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 180 ~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 249 (329)
+++..+. +. .....++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8886542 11 122457888899999999999999999998754111 11 23678889999999999999999
Q ss_pred HHHHHHcCC--C---CChhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhCCchhHHHHH
Q 020193 250 FSEMKIKGH--P---PNRPVYTMLITMCGRGGRFVEAANYLVEMTEM----GLT-PISRCFDLVTDGLKNCGKHDLAEKI 319 (329)
Q Consensus 250 ~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~~~ 319 (329)
+++...... . ....++..+...+...|++++|...+++..+. +.. ....++..+..+|.+.|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 998876411 0 12467788889999999999999999988742 111 1245788899999999999999999
Q ss_pred HHHHhhhc
Q 020193 320 ELLEVSLR 327 (329)
Q Consensus 320 ~~~~~~~~ 327 (329)
++...++.
T Consensus 366 ~~~al~~~ 373 (411)
T 4a1s_A 366 AEQHLQLA 373 (411)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 98877653
No 55
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=7.8e-15 Score=121.19 Aligned_cols=298 Identities=10% Similarity=-0.014 Sum_probs=212.8
Q ss_pred HHccCchhHHHHHHHHhhhc--CC--CccHHHHHHHHHHH--HhcchHHHHH-----------HHHHHHHHcCCccCh--
Q 020193 27 FGKHGLVDNAVEVFNKCTAF--NC--QQCVLLYNSLLFAL--CEVKLFHGAY-----------ALIRRMIRKGFVPDK-- 87 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 87 (329)
+.+.+++++|..+++++.+. .+ .++...|..++..- .-.+.++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45789999999999998643 12 23444445544332 2334555555 677766543211111
Q ss_pred --HHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CC----CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCC------c
Q 020193 88 --RTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NP----PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF------V 154 (329)
Q Consensus 88 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~ 154 (329)
..+......+...|++++|...+++..+.-. .+ ...++..+...|...|+++.|...+++..+... .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 1122355677889999999999999976410 12 245788899999999999999999998776411 1
Q ss_pred cCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-C
Q 020193 155 LDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-A----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GH-K 224 (329)
Q Consensus 155 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 224 (329)
....+++.+..+|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12357888889999999999999999988653211 1 1347888999999999999999999998762 22 3
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHhCCCCCC-
Q 020193 225 PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----GHPPNRPVYTMLITMCGRGGR---FVEAANYLVEMTEMGLTPI- 296 (329)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~- 296 (329)
....++..+...+...|++++|...+++.... +-+.....+..+...+...|+ +++|..++++. +..|+
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~ 338 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL 338 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence 34567888999999999999999999988754 112223345677788888998 67777777655 33333
Q ss_pred hhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 297 SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
...+..+...|...|++++|.+.++...++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 5577889999999999999999998887654
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.70 E-value=1.8e-15 Score=122.26 Aligned_cols=271 Identities=15% Similarity=0.029 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc----HHHHHHHHHHHHhcchHHHHHHHHHHHHHc----CCc-cChH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC----VLLYNSLLFALCEVKLFHGAYALIRRMIRK----GFV-PDKR 88 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 88 (329)
..+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|.+.+++.... +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677788888888888888887764 333 356777888888888888888888776543 111 1245
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCC--------------------hHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPP----VRGRDLLVQGLLNAGY--------------------LESAKQ 143 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 143 (329)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 667777778888888888888777654310 011 2256666677777777 667766
Q ss_pred HHHHHHHc----CCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCchhhHHHHHHHHHhcCCHHHHHH
Q 020193 144 MVNKMIKQ----GFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGL-----CADVSTYKILIPAVSKAGMIDEAFR 213 (329)
Q Consensus 144 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 213 (329)
.+++..+. +..+ ...++..+...+...|++++|...+++..+... .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66654432 1111 123455555666666666666666665543210 0012245555555566666666666
Q ss_pred HHHHHHhCCCC-CC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcC----C-CCChhhHHHHHHHHhccCCHHHHHH
Q 020193 214 LLHNLVEDGHK-PF----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG----H-PPNRPVYTMLITMCGRGGRFVEAAN 283 (329)
Q Consensus 214 ~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~ 283 (329)
.+++..+.... ++ ..++..+...+...|++++|...+++..... . .....++..+...+...|++++|..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554432000 01 2334445555555555555555555544320 0 0012234444445555555555555
Q ss_pred HHHHHH
Q 020193 284 YLVEMT 289 (329)
Q Consensus 284 ~~~~~~ 289 (329)
.+++..
T Consensus 325 ~~~~a~ 330 (338)
T 3ro2_A 325 FAEKHL 330 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.7e-15 Score=125.88 Aligned_cols=277 Identities=14% Similarity=0.100 Sum_probs=212.7
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC----hHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CCC-
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD----KRTYAILVNAWCSSGKMREAQEFLQEMSDK----GFN- 119 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~- 119 (329)
......+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 345667778888999999999999999999987432 3 357888899999999999999999987543 111
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cC----HHhHHHHHHHHHccCC--------------------HH
Q 020193 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LD----LETFNSLIETICKSGE--------------------VE 174 (329)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~ 174 (329)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12456778889999999999999999987754111 12 4478888899999999 99
Q ss_pred HHHHHHHHHHHc----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCChh
Q 020193 175 FCVEMYYSVCKL----GL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH-KPF----PSLYAPIIKGMFRRGQFD 244 (329)
Q Consensus 175 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 244 (329)
+|...+.+.... +. .....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 11 11245788889999999999999999999775311 111 237888899999999999
Q ss_pred HHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCchh
Q 020193 245 DAFCFFSEMKIKGHP-PN----RPVYTMLITMCGRGGRFVEAANYLVEMTEM----GLTP-ISRCFDLVTDGLKNCGKHD 314 (329)
Q Consensus 245 ~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 314 (329)
+|...+++....... ++ ..++..+...+...|++++|...+++..+. +..+ ...++..+..+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999988754110 11 457788889999999999999999988742 2111 1567888999999999999
Q ss_pred HHHHHHHHHhhh
Q 020193 315 LAEKIELLEVSL 326 (329)
Q Consensus 315 ~a~~~~~~~~~~ 326 (329)
+|.+.++...++
T Consensus 325 ~A~~~~~~al~~ 336 (406)
T 3sf4_A 325 QAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=1.1e-15 Score=123.48 Aligned_cols=275 Identities=14% Similarity=0.103 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC----hHHHHHHHHHHHhcCchhHHHHHHHHHHhC----C-CCCCc
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD----KRTYAILVNAWCSSGKMREAQEFLQEMSDK----G-FNPPV 122 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 122 (329)
...+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++.... + .+...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 445566678888999999999999999987432 3 367888899999999999999999887543 1 11224
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cC----HHhHHHHHHHHHccCC--------------------HHHHH
Q 020193 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV-LD----LETFNSLIETICKSGE--------------------VEFCV 177 (329)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 177 (329)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788889999999999999999987654111 12 3477888889999999 99999
Q ss_pred HHHHHHHHc----CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHccCChhHHH
Q 020193 178 EMYYSVCKL----GL-CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-P----FPSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 178 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~ 247 (329)
+.+++.... +. .....++..+...+...|++++|...+++..+.... + ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998886542 11 122457888889999999999999999987653110 1 1236788889999999999999
Q ss_pred HHHHHHHHcCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhCCchhHHH
Q 020193 248 CFFSEMKIKGHP-PN----RPVYTMLITMCGRGGRFVEAANYLVEMTEM----GLT-PISRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 248 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~a~ 317 (329)
..+++....... ++ ..++..+...+...|++++|...+++..+. +.. ....++..+...+.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999988754110 11 457788888999999999999999988742 111 12457888999999999999999
Q ss_pred HHHHHHhhhc
Q 020193 318 KIELLEVSLR 327 (329)
Q Consensus 318 ~~~~~~~~~~ 327 (329)
+.++...++.
T Consensus 324 ~~~~~a~~~~ 333 (338)
T 3ro2_A 324 HFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=1.3e-13 Score=110.37 Aligned_cols=218 Identities=9% Similarity=-0.024 Sum_probs=152.1
Q ss_pred hHHHHHHHHhhhcCCCccHHHHHHHHHHHHh-------cchH-------HHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 34 DNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-------VKLF-------HGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
++|..+|+++.... |.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888765 7778888888877763 3654 7888888887763112245577788888888
Q ss_pred cCchhHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH-ccCCHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPP-VR-GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC-KSGEVEFC 176 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 176 (329)
.|++++|..+|++..+.. |+ .. .|..++..+.+.|++++|..+|++..+.... +...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887743 43 33 6777788888888888888888888776432 3444443333322 25788888
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG-HKP--FPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
..+|++..+..+ .+...|..++..+.+.|++++|..+|++..... ..| ....|..++......|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888887766533 356677777777777788888888888877752 233 3456777777777778888888887777
Q ss_pred HHc
Q 020193 254 KIK 256 (329)
Q Consensus 254 ~~~ 256 (329)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.67 E-value=3.2e-14 Score=104.85 Aligned_cols=166 Identities=14% Similarity=0.048 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
++.+|..+...+.+.|++++|++.|++..+.+ |.+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45566666666666777777777777666655 556666666666666666666666666666655322 4455555566
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (329)
.+...++++.+...+.+..... +.+...+..+..++.+.|++++|++.|++..+..+. +..++..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 334555566666666666666666666666655322 45556666666666666666
Q ss_pred HHHHHHHHHH
Q 020193 176 CVEMYYSVCK 185 (329)
Q Consensus 176 a~~~~~~~~~ 185 (329)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.5e-13 Score=108.64 Aligned_cols=238 Identities=8% Similarity=-0.005 Sum_probs=180.4
Q ss_pred cHHHHHHHHHHHHhc----chH----HHHHHHHHHHHHcCCccChHHHHHHHHHHHh-------cCch-------hHHHH
Q 020193 51 CVLLYNSLLFALCEV----KLF----HGAYALIRRMIRKGFVPDKRTYAILVNAWCS-------SGKM-------REAQE 108 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~ 108 (329)
+...|...+....+. ++. ++|...|++..... +-+...|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 456777777776554 233 68888999988763 3367788888877753 4775 88999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH-hHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (329)
+|++..+.-.+.+...|..++..+.+.|++++|.++|+++.+.... +.. .|..+...+.+.|++++|..+|++..+..
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 9999987311345568888999999999999999999999886322 343 78888888899999999999999988765
Q ss_pred CCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCC--Chh
Q 020193 188 LCADVSTYKILIPAVS-KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG-HPP--NRP 263 (329)
Q Consensus 188 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~ 263 (329)
+ ++...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++..... ++| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 4 34455544433322 369999999999998876432 67788888888999999999999999998863 354 356
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
.|..++....+.|+.+.|..+++++.+..
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 78888888888999999999999988654
No 62
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=2.2e-13 Score=123.86 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=163.7
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 45566677777777777777531 1222222222 556677777666643 145567777777777777
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+++|...|.+. .+...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 77777777543 345667777777777777777777777766653 23333345777777777766433332
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCh
Q 020193 183 VCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNR 262 (329)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (329)
+ .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1 244555666777777777777777777763 367777777777777777777777652 45
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 263 PVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 263 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|.++++....++
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 6666666666666666666665432 23345566677777777777777777776665443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=1.5e-14 Score=122.61 Aligned_cols=216 Identities=12% Similarity=0.029 Sum_probs=171.3
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch-hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM-REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 144 (329)
+.+++++..+++..... +.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44677777777765543 34677888888888889999 99999998888765 44577888888899999999999999
Q ss_pred HHHHHHcCCccCHHhHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc--------CC
Q 020193 145 VNKMIKQGFVLDLETFNSLIETICKS---------GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA--------GM 207 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 207 (329)
|++..+.. |+...+..+..++... |++++|.+.+++..+..+ .+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 99888774 5667888888888888 889999999998887654 4577888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 020193 208 IDEAFRLLHNLVEDGHK--PFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (329)
+++|...|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988875321 367788888889999999999999999888763 335667888888888888888888755
Q ss_pred HH
Q 020193 286 VE 287 (329)
Q Consensus 286 ~~ 287 (329)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=2.1e-13 Score=100.46 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
++.+|..+...+...|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666655322 45555666666666666666666666655543 233444555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (329)
.+...++++.|...+.+..+.... +...+..+..++.+.|++++|++.|++..+..+ .+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 555566666666666655554322 445555555555555566666555555555432 334455555555555555555
Q ss_pred HHHHHHHHHh
Q 020193 211 AFRLLHNLVE 220 (329)
Q Consensus 211 a~~~~~~~~~ 220 (329)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 65
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=2.5e-13 Score=111.95 Aligned_cols=311 Identities=9% Similarity=-0.004 Sum_probs=216.9
Q ss_pred CCCCHHHHHHHHHHH--HccCchhHHHHHHHHhhhc--CC--CccHHHHHHHHHHHH--hcchHHHHH---------HHH
Q 020193 13 LSVSPQTLSLIIEEF--GKHGLVDNAVEVFNKCTAF--NC--QQCVLLYNSLLFALC--EVKLFHGAY---------ALI 75 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~--~~~~~~~a~---------~~~ 75 (329)
+.|+..+-+.|-..| ...+++++|.++++++.+. .+ .++...|-.++..-. -.+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456677777777777 7899999999999987542 11 233444455544311 112222223 566
Q ss_pred HHHHHcCCccCh----HHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CC----CcccHHHHHHHHHhcCChHHHHHHHH
Q 020193 76 RRMIRKGFVPDK----RTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NP----PVRGRDLLVQGLLNAGYLESAKQMVN 146 (329)
Q Consensus 76 ~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 146 (329)
+.+.....+.+. ..+......+...|++++|...+++..+... .+ ...++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 655432211111 1233345567789999999999999876421 12 23567788999999999999999999
Q ss_pred HHHHcCC-----cc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 020193 147 KMIKQGF-----VL-DLETFNSLIETICKSGEVEFCVEMYYSVCKL----GL-CADVSTYKILIPAVSKAGMIDEAFRLL 215 (329)
Q Consensus 147 ~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (329)
+..+... .+ ...+++.+..+|...|++++|.+.+++..+. +. .....++..+..+|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8775311 11 2457788899999999999999999987653 11 112457888999999999999999999
Q ss_pred HHHHh-----CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHhccCC---HHHHHH
Q 020193 216 HNLVE-----DGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH----PPNRPVYTMLITMCGRGGR---FVEAAN 283 (329)
Q Consensus 216 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~ 283 (329)
++..+ .... ...++..+...+.+.|++++|...+++...... +.....+..+...+...++ +.+|..
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99876 4332 367788899999999999999999999887522 2223345666667777888 777777
Q ss_pred HHHHHHhCCCCCC-hhhHHHHHHHHHhCCchhHHHHHHHHHhhhc
Q 020193 284 YLVEMTEMGLTPI-SRCFDLVTDGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 284 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
.+++ .+..|+ ...+..+...|...|++++|.+.++...+++
T Consensus 325 ~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7765 233333 4567789999999999999999998877653
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=5.5e-15 Score=118.28 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=49.4
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-ccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQ------GF-VLDLETFNSLIETICKSGEVEFCVEMYYSVCKL------GLCA 190 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 190 (329)
++..+...+...|++++|...+++..+. +. ......+..+...+...|++++|.+.+++..+. +..|
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3444445555555555555555544432 11 112334555555566666666666666655442 1111
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 191 -DVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 191 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
...++..+..++...|++++|...++++.+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233455566666666666666666666553
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.5e-15 Score=119.39 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhc-------CCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-----
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAF-------NCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK----- 81 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 81 (329)
+.+..++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334677899999999999999999999998763 33556778999999999999999999999998764
Q ss_pred -C-CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC------CC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 020193 82 -G-FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK------GF-NPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ- 151 (329)
Q Consensus 82 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 151 (329)
+ .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234567888999999999999999999988764 21 223456788899999999999999999988765
Q ss_pred -----CCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 020193 152 -----GFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 152 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (329)
+..| ...++..+..++...|++++|...+++..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2122 3457888899999999999999999998763
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.6e-12 Score=118.49 Aligned_cols=253 Identities=17% Similarity=0.147 Sum_probs=136.3
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
..+++++|.++.++. .+..+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555555433 12445555555555555555555555332 244445555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCh----------------------------HHHHHHHHHHHHcCCccCHHhH
Q 020193 109 FLQEMSDKGFNPPVRGRDLLVQGLLNAGYL----------------------------ESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
++....+.. +++...+.++.+|++.+++ ++|...|... ..|
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 555444432 2222222345555555544 4444444442 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~ 1293 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 1293 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHc
Confidence 44444444444444444444433 2234444444444444444444443322 223555667788888888
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhCCc
Q 020193 241 GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR--GGRFVEAANYLVEMTEMGLTP------ISRCFDLVTDGLKNCGK 312 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~ 312 (329)
|.+++|+.+++...... +-....|+-+...+.+ .++..++.+.|..-. +++| +...|..+...|.+.|+
T Consensus 1294 G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1294 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred CCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 99999998888777553 3345566666666654 344555555554322 2333 46678889999999999
Q ss_pred hhHHHH
Q 020193 313 HDLAEK 318 (329)
Q Consensus 313 ~~~a~~ 318 (329)
++.|..
T Consensus 1371 ~dnA~~ 1376 (1630)
T 1xi4_A 1371 YDNAII 1376 (1630)
T ss_pred HHHHHH
Confidence 998873
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=2.9e-14 Score=120.80 Aligned_cols=213 Identities=11% Similarity=0.021 Sum_probs=168.9
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHH
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL-ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMY 180 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 180 (329)
.++++.+.++...... +.+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566777777766543 44677788888888899999 9999999988887533 5778888889999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------CCh
Q 020193 181 YSVCKLGLCADVSTYKILIPAVSKA---------GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR--------GQF 243 (329)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 243 (329)
++..+.. |+...+..+..++... |++++|...+++..+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9888764 5567888888888888 8899999999988876433 577888888888888 889
Q ss_pred hHHHHHHHHHHHcCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHH
Q 020193 244 DDAFCFFSEMKIKGHP--PNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 244 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
++|...|++..+.... .+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988876210 377888888889999999999999998888754 234667888888888888888887643
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.60 E-value=2.4e-12 Score=105.88 Aligned_cols=299 Identities=13% Similarity=0.025 Sum_probs=208.5
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH----HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc-cC----hHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV----LLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-PD----KRT 89 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 89 (329)
........+...|++++|...++.........+. .+++.+...+...|++++|.+.+++....... ++ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3445556677899999999999998765422222 25677778888999999999999988753211 12 233
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhC----CCC--C-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc----CHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDK----GFN--P-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL----DLE 158 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 158 (329)
+..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++..+..... ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999988653 211 2 23455667888999999999999999887653221 234
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhh
Q 020193 159 TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV-STYK-----ILIPAVSKAGMIDEAFRLLHNLVEDGHKPF---PSL 229 (329)
Q Consensus 159 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 229 (329)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777888899999999999999998754222211 1121 233457789999999999998775432211 224
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC----CC
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKIK----GHPPNR-PVYTMLITMCGRGGRFVEAANYLVEMTEM----GLT----PI 296 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~----p~ 296 (329)
+..+...+...|++++|...++..... |.+++. ..+..+..++...|+.++|...+++.... |.. ..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~ 335 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIE 335 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHc
Confidence 567788899999999999999887643 222222 35666778888999999999999887642 221 11
Q ss_pred hhhHHHHHHHHHhCCchhHHH
Q 020193 297 SRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 297 ~~~~~~l~~~~~~~g~~~~a~ 317 (329)
......++..+...+..+++.
T Consensus 336 g~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 336 GEAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HHHHHHHHHHHHHTTCSCHHH
T ss_pred cHHHHHHHHHHHhCCCCchHH
Confidence 223455667777777764443
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.59 E-value=4.9e-13 Score=110.39 Aligned_cols=231 Identities=10% Similarity=0.043 Sum_probs=176.2
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHc----CCcc-ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-C-----CcccHH
Q 020193 58 LLFALCEVKLFHGAYALIRRMIRK----GFVP-DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-P-----PVRGRD 126 (329)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 126 (329)
....+...|++++|...|++..+. +-.+ ...++..+...+...|+++.|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999998864 1111 3467888999999999999999999988654211 1 134678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCc-c----CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCchhhHH
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFV-L----DLETFNSLIETICKSGEVEFCVEMYYSVCK-----LGLCADVSTYK 196 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 196 (329)
.+...|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999987754111 1 124788899999999999999999999876 22234467889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCChhhHHHHH
Q 020193 197 ILIPAVSKAGMIDEAFRLLHNLVED----GHKPFPSLYAPIIKGMFRRGQ---FDDAFCFFSEMKIKGHPPNRPVYTMLI 269 (329)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 269 (329)
.+...+.+.|++++|...+++..+. +.+.....+..+...+...|+ +++|..++++... .+.....+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHH
Confidence 9999999999999999999987653 111122335678888889998 6777777766521 122345677888
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 020193 270 TMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~ 290 (329)
..|...|++++|...+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998874
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=3.1e-12 Score=107.79 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=121.6
Q ss_pred CcccHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCchh
Q 020193 121 PVRGRDLLVQGLLNAG---YLESAKQMVNKMIKQGFVLDLETFNSLIETICKS----GEVEFCVEMYYSVCKLGLCADVS 193 (329)
Q Consensus 121 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 193 (329)
++..+..+...|...| +.++|++.|++..+.|.. +...+..+...|... +++++|...|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3346777777777777 777888888877777643 555445566666544 67788888887766 2 3444
Q ss_pred hHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCChhhH
Q 020193 194 TYKILIPA-V--SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG-----QFDDAFCFFSEMKIKGHPPNRPVY 265 (329)
Q Consensus 194 ~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~ 265 (329)
.+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|..+|++.. . -+...+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHH
Confidence 55555555 3 45677888888888877765 4556666666665 44 7778888877766 3 355666
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCchhHHHHHHHHHhh
Q 020193 266 TMLITMCGR----GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIELLEVS 325 (329)
Q Consensus 266 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 325 (329)
..|...|.. ..++++|..+|++..+.|. ......|...|.. ..+.++|...+++..+
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 666666654 3477888888877776653 2344445555543 3466677776666543
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=3.2e-12 Score=105.07 Aligned_cols=273 Identities=13% Similarity=0.005 Sum_probs=195.1
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChH----HHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCC----ccc
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR----TYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPP----VRG 124 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~ 124 (329)
........+...|++++|...+++........+.. ++..+...+...|++++|...+++.....- ..+ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445566778999999999999988764322222 456677788899999999999998865321 111 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCc--c-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----chh
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQ----GFV--L-DLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA----DVS 193 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~ 193 (329)
+..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778899999999999999987653 211 2 23456678888999999999999999987643221 235
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHccCChhHHHHHHHHHHHcCCCCC---hhh
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFP-SLYA-----PIIKGMFRRGQFDDAFCFFSEMKIKGHPPN---RPV 264 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 264 (329)
++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6778888999999999999999998754211111 1121 233447799999999999998876432211 224
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCh-hhHHHHHHHHHhCCchhHHHHHHHHHhhh
Q 020193 265 YTMLITMCGRGGRFVEAANYLVEMTE----MGLTPIS-RCFDLVTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 265 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
+..+...+...|++++|...+++... .+..++. ..+..+..++...|+.++|.+.++....+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56778889999999999999988764 2322222 36777788899999999999988776543
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=2.9e-13 Score=114.01 Aligned_cols=284 Identities=12% Similarity=0.017 Sum_probs=158.5
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchH---HHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF---HGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
+...+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|..+|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 3444555566666666666655443 222333344444444444 5555555555432 22233334332333
Q ss_pred cC-----chhHHHHHHHHHHhCCCC--------------------------------CCcccHHHHHHHHHhcCChHHHH
Q 020193 100 SG-----KMREAQEFLQEMSDKGFN--------------------------------PPVRGRDLLVQGLLNAGYLESAK 142 (329)
Q Consensus 100 ~~-----~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~~~~a~ 142 (329)
.+ ++++|...|++..+.|.+ .++.....+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 22 445555555555544311 11233334444444444333333
Q ss_pred HHHHHHHHcCCccCHHhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----CCHHHHHHHH
Q 020193 143 QMVNKMIKQGFVLDLETFNSLIETICKSG---EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA----GMIDEAFRLL 215 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 215 (329)
.....+.+.-...++..+..+...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 33222222211224447777888888888 88899999988888775 5555556666676554 6889999999
Q ss_pred HHHHhCCCCCChhhHHHHHHH-H--HccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccC-----CHHHHHHHHHH
Q 020193 216 HNLVEDGHKPFPSLYAPIIKG-M--FRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGG-----RFVEAANYLVE 287 (329)
Q Consensus 216 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~ 287 (329)
++.. .| +...+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|.++|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 8877 33 45566666665 4 56788999999999988775 5667777777776 44 88999999888
Q ss_pred HHhCCCCCChhhHHHHHHHHHh----CCchhHHHHHHHHHhhh
Q 020193 288 MTEMGLTPISRCFDLVTDGLKN----CGKHDLAEKIELLEVSL 326 (329)
Q Consensus 288 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 326 (329)
.. +-+......|...|.. ..++++|.+.++...+.
T Consensus 313 Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 313 AV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred Hh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 76 3356677777777766 34888898888876653
No 75
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=1.2e-11 Score=106.58 Aligned_cols=259 Identities=8% Similarity=0.001 Sum_probs=192.1
Q ss_pred ccCchhHHHHHHHHh------hhcC---CCcc--------HHHHHHHHHHHHhc----ch----HHHHHHHHHHHHHcCC
Q 020193 29 KHGLVDNAVEVFNKC------TAFN---CQQC--------VLLYNSLLFALCEV----KL----FHGAYALIRRMIRKGF 83 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~----~~~a~~~~~~~~~~~~ 83 (329)
+.+++..|..++... .+.. ++|+ ...|...+...... ++ .+++..+|++.....
T Consensus 190 ~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~- 268 (530)
T 2ooe_A 190 RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL- 268 (530)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-
Confidence 345677787777663 2221 2443 35666655443322 12 247788899888763
Q ss_pred ccChHHHHHHHHHHHh-------cCchh-------HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 84 VPDKRTYAILVNAWCS-------SGKMR-------EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
+-+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3367788888888775 78887 899999999863234567889999999999999999999999999
Q ss_pred HcCCccCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCh
Q 020193 150 KQGFVLDL-ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA-VSKAGMIDEAFRLLHNLVEDGHKPFP 227 (329)
Q Consensus 150 ~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~ 227 (329)
+.... +. ..|..++..+.+.|++++|.++|++..+... .+...|...... +...|+.++|..+|+...+... -+.
T Consensus 349 ~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~ 425 (530)
T 2ooe_A 349 AIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIP 425 (530)
T ss_dssp HSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCH
T ss_pred Ccccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCH
Confidence 86322 33 5888999999999999999999999987633 233333332222 3468999999999999887642 367
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 228 SLYAPIIKGMFRRGQFDDAFCFFSEMKIKGH-PPN--RPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
..|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.++.+++.+.
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998632 232 347777788888899999999999998764
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=6.6e-13 Score=97.57 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666677777777777777777776654 5566677777777777777777777777776653 22455666666667
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCV 177 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 177 (329)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777666553 344555666666666666666666666666655322 4555666666666666666666
Q ss_pred HHHHHHHH
Q 020193 178 EMYYSVCK 185 (329)
Q Consensus 178 ~~~~~~~~ 185 (329)
..++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.55 E-value=4e-13 Score=118.52 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=147.5
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
|-++.+|+.|...+.+.|++++|++.|++..+.. |.+..+|+.+..+|.+.|++++|++.|++..+.... +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 3457889999999999999999999999999887 777899999999999999999999999999887533 67789999
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
..++...|++++|++.|++..+.. +-+...++.+..+|...|++++|++.|++..+.... +...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999998875 456788999999999999999999999999987544 678899999999999999
Q ss_pred HHHHHHHHHHHH
Q 020193 174 EFCVEMYYSVCK 185 (329)
Q Consensus 174 ~~a~~~~~~~~~ 185 (329)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1.4e-12 Score=115.08 Aligned_cols=168 Identities=15% Similarity=0.033 Sum_probs=148.7
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
|.+..+|+.|...+.+.|++++|++.|++..+.... +..++..+..++.+.|++++|+..|++..+.. +-+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 556889999999999999999999999999987533 67889999999999999999999999998875 4567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMI 208 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (329)
..++...|++++|++.|++..+.... +...|..+..++...|++++|++.|++..+..+ -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 99999999999999999999987544 678999999999999999999999999988654 4577899999999999999
Q ss_pred HHHHHHHHHHHh
Q 020193 209 DEAFRLLHNLVE 220 (329)
Q Consensus 209 ~~a~~~~~~~~~ 220 (329)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=3.5e-12 Score=93.67 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555566666666666666666555432 2244555556666666666666666666655543 33444555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 020193 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212 (329)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 212 (329)
...|++++|.+.++++.+... .+...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 556666666666655555432 2444555555555555555555555555544432 23444455555555555555555
Q ss_pred HHHHHHH
Q 020193 213 RLLHNLV 219 (329)
Q Consensus 213 ~~~~~~~ 219 (329)
..++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=7.5e-12 Score=95.42 Aligned_cols=135 Identities=14% Similarity=-0.001 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|++.|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3556666666666667777777777776666552255555555666666666666666666666654322 445566666
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPPV-------RGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 66666666666666666665543 2223 23444445555555555555555555544
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.49 E-value=9.8e-12 Score=94.78 Aligned_cols=181 Identities=10% Similarity=-0.071 Sum_probs=150.8
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
+.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788889999999999999999999999988654688888889999999999999999999999875 4467788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCH-------HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--chhhHHHHH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDL-------ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA--DVSTYKILI 199 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 199 (329)
..++...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+..+ . +...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHH
Confidence 99999999999999999999987433 44 5688899999999999999999999988643 2 356788888
Q ss_pred HHHHhcCCH---------------------------HHHHHHHHHHHhCCCCCChhhHHHH
Q 020193 200 PAVSKAGMI---------------------------DEAFRLLHNLVEDGHKPFPSLYAPI 233 (329)
Q Consensus 200 ~~~~~~~~~---------------------------~~a~~~~~~~~~~~~~~~~~~~~~l 233 (329)
.+|...|+. ++|...+++..+..+. +..+...+
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 888888877 9999999999886432 34443333
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=1.5e-12 Score=102.42 Aligned_cols=228 Identities=12% Similarity=0.040 Sum_probs=158.9
Q ss_pred HccCchhHHHHHHHHhhh-------cCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc------C-CccChHHHHHH
Q 020193 28 GKHGLVDNAVEVFNKCTA-------FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK------G-FVPDKRTYAIL 93 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 93 (329)
...|++++|...|++..+ .+.+....++..+...+...|++++|...+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 356777777777776654 233456778999999999999999999999998864 2 12345678889
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCC-------CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc------CCcc-CHHh
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKG-------FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ------GFVL-DLET 159 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 159 (329)
...+...|++++|...+++..+.. .+....++..+...+...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999886541 1233567888899999999999999999988765 1122 3567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCc-hhhHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCC
Q 020193 160 FNSLIETICKSGEVEFCVEMYYSVCKL-------GLCAD-VSTYKILIPAVSKAGMI------DEAFRLLHNLVEDGHKP 225 (329)
Q Consensus 160 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~ 225 (329)
+..+..++...|++++|...+++..+. ...+. ...+..+...+...+.. ..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999988753 11222 23333333333333322 222222222111 1122
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
...++..+...|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988753
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=1.7e-12 Score=102.10 Aligned_cols=157 Identities=14% Similarity=0.081 Sum_probs=104.5
Q ss_pred hcchHHHHHHHHHHHHH-------cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC------C-CCCCcccHHHHH
Q 020193 64 EVKLFHGAYALIRRMIR-------KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK------G-FNPPVRGRDLLV 129 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~ 129 (329)
..|++++|...+++..+ ...+....++..+...+...|++++|...+++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555666666555543 222334567888888888999999999988887654 1 122345677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHc------C-CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc------CCCC-chhhH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQ------G-FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL------GLCA-DVSTY 195 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~ 195 (329)
..+...|++++|...+++..+. . .+....++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 1 1223456677777777888888888887777654 1112 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 196 KILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
..+..++...|++++|..+++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777777777776654
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.1e-11 Score=102.12 Aligned_cols=231 Identities=11% Similarity=0.041 Sum_probs=173.5
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHcCC-cc----ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC--CC----CCccc
Q 020193 56 NSLLFALCEVKLFHGAYALIRRMIRKGF-VP----DKRTYAILVNAWCSSGKMREAQEFLQEMSDKG--FN----PPVRG 124 (329)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~ 124 (329)
......+...|++++|...|++..+... .+ ...++..+...+...|+++.|...+++..+.. .. ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999886421 12 24578888999999999999999999886531 11 12446
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCcc-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCchhh
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQ----GFVL-DLETFNSLIETICKSGEVEFCVEMYYSVCK-----LGLCADVST 194 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 194 (329)
++.+..+|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|.+.+++... ..+ ....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHH
Confidence 778899999999999999999987763 1111 235678889999999999999999999876 333 33778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCC-ChhhHH
Q 020193 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGH----KPFPSLYAPIIKGMFRRGQ---FDDAFCFFSEMKIKGHPP-NRPVYT 266 (329)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~ 266 (329)
+..+...+.+.|++++|...+++..+... +.....+..+...+...++ +.+|...++.. +..| ....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 88999999999999999999999876421 1123345666667777888 67777777652 2222 334667
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 020193 267 MLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 267 ~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
.+...|...|++++|...+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788899999999999999998764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=4.8e-11 Score=94.55 Aligned_cols=234 Identities=12% Similarity=0.013 Sum_probs=159.4
Q ss_pred hHHHHHHHHhhhcCCCccHHHHHHHHHHHHh--cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHH
Q 020193 34 DNAVEVFNKCTAFNCQQCVLLYNSLLFALCE--VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQ 111 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 111 (329)
.+|.+++.+..+.- +++...| .+. .. .+++++|...|++. ...+...|++++|...|+
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 35777777777653 3333334 322 22 22588888888776 345778899999999998
Q ss_pred HHHhC----CCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-C----HHhHHHHHHHHHcc-CCHHHHHHHH
Q 020193 112 EMSDK----GFNP-PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-D----LETFNSLIETICKS-GEVEFCVEMY 180 (329)
Q Consensus 112 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~ 180 (329)
+.... +-++ ...+|+.+..+|.+.|++++|+..+++..+..... + ..+++.+...|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 87553 2111 14578888999999999999999999877642110 1 34778888888886 9999999999
Q ss_pred HHHHHcCCCC-c----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCChhHHHHH
Q 020193 181 YSVCKLGLCA-D----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS------LYAPIIKGMFRRGQFDDAFCF 249 (329)
Q Consensus 181 ~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~ 249 (329)
++..+..... + ..++..+...+.+.|++++|...|++..+........ .+..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9887642211 1 3467888888999999999999999988764332221 466777888889999999999
Q ss_pred HHHHHHcCCCCCh------hhHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 020193 250 FSEMKIKGHPPNR------PVYTMLITMCG--RGGRFVEAANYLVEMT 289 (329)
Q Consensus 250 ~~~~~~~~~~~~~------~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 289 (329)
+++.... .|+. ..+..++.++. ..+++++|...|+.+.
T Consensus 222 ~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 222 LQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 9888764 2321 12344555554 4566777777776553
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.41 E-value=4.5e-11 Score=94.74 Aligned_cols=208 Identities=13% Similarity=-0.020 Sum_probs=125.6
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc----CCccC-hHHHHHHHHHHHhcCchhHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK----GFVPD-KRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 106 (329)
++++|...|+.. ...|...|++++|.+.|++.... |.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 34566677778887777766543 21111 45677777778888888888
Q ss_pred HHHHHHHHhCCCC-CC----cccHHHHHHHHHhc-CChHHHHHHHHHHHHcCCcc-C----HHhHHHHHHHHHccCCHHH
Q 020193 107 QEFLQEMSDKGFN-PP----VRGRDLLVQGLLNA-GYLESAKQMVNKMIKQGFVL-D----LETFNSLIETICKSGEVEF 175 (329)
Q Consensus 107 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 175 (329)
+..+++..+.... .+ ..+++.+...|... |++++|+..+++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8877777543210 01 23566777777775 88888888887776542110 1 2456677777788888888
Q ss_pred HHHHHHHHHHcCCCCchh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChh---hHHHHHHHHH--ccCCh
Q 020193 176 CVEMYYSVCKLGLCADVS------TYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-PFPS---LYAPIIKGMF--RRGQF 243 (329)
Q Consensus 176 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~---~~~~l~~~~~--~~~~~ 243 (329)
|...|++..+..+..... .+..+..++...|++++|...|++..+.... ++.. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 888888777654332221 4566667777778888888888776654221 1111 2333444443 34556
Q ss_pred hHHHHHHHHHH
Q 020193 244 DDAFCFFSEMK 254 (329)
Q Consensus 244 ~~a~~~~~~~~ 254 (329)
++|...|+.+.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 66666665544
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.41 E-value=6.1e-11 Score=92.38 Aligned_cols=103 Identities=21% Similarity=0.128 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc-c-ChH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV-P-DKR 88 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~ 88 (329)
+.++..+..+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++.+.|++++|...|++..+..+. | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4467778888888899999999999999998865 444 678888899999999999999999999876321 1 244
Q ss_pred HHHHHHHHHHh--------cCchhHHHHHHHHHHhCC
Q 020193 89 TYAILVNAWCS--------SGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 89 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~ 117 (329)
.+..+..++.. .|++++|...|+++.+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 66777778888 899999999999988764
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.37 E-value=8e-11 Score=81.36 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=73.0
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555566666666666666666665544 4455556666666666666666666666665543 223445555555556
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666665555443 233444555555555555555555555555443
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1e-10 Score=87.78 Aligned_cols=188 Identities=14% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
+..+-.....+...|++++|+..|+...+.+ |.+...|... ... ............+..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~--------------~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVD--------------KNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSC--------------TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhc--------------chhhhhHHHHHHHHHH
Confidence 3444455566677888888888888887765 4344444440 000 0000011122335555
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC--HH
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE--VE 174 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 174 (329)
+.+.|++++|...+++..+.. |.+...+..+..++...|++++|...|++..+..+. +..++..+..+|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHH
Confidence 666666666666666665543 334555666666666666666666666666655332 45555555555544332 23
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY 230 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 230 (329)
.+...+..... +.|....+.....++...|++++|...|++..+. .|+....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 33444443322 1122222333344445556666666666666553 3444433
No 90
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.35 E-value=3.1e-09 Score=83.78 Aligned_cols=221 Identities=6% Similarity=-0.047 Sum_probs=134.5
Q ss_pred ccCc-hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHcCCccChHHHHHHHHHH----Hhc-
Q 020193 29 KHGL-VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK--LFHGAYALIRRMIRKGFVPDKRTYAILVNAW----CSS- 100 (329)
Q Consensus 29 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 100 (329)
+.|. .++|+..++.+...+ |-+..+|+.--..+...+ +++++++.++.+....++ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 4444 468999999988887 777888888888887777 888888888888876544 555665544444 444
Q ss_pred --CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH--HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC----
Q 020193 101 --GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE--SAKQMVNKMIKQGFVLDLETFNSLIETICKSGE---- 172 (329)
Q Consensus 101 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 172 (329)
+++++++.+++.+.+.. +-+..+|+....++.+.|.++ ++++.++++.+..+. |...|+.....+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 67788888888887765 556777777777777777777 788888888777554 66666665555555554
Q ss_pred --HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHccCChhHHH
Q 020193 173 --VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE-AFRLLHNLVEDG--HKPFPSLYAPIIKGMFRRGQFDDAF 247 (329)
Q Consensus 173 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 247 (329)
++++++.++.+....+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..++..+..+...+.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 5555555555555443 444555555555544444222 223333332211 0113334444444444444444444
Q ss_pred HHHHHHH
Q 020193 248 CFFSEMK 254 (329)
Q Consensus 248 ~~~~~~~ 254 (329)
++++.+.
T Consensus 279 ~~~~~l~ 285 (306)
T 3dra_A 279 TVYDLLK 285 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.34 E-value=3.2e-10 Score=88.60 Aligned_cols=245 Identities=11% Similarity=0.011 Sum_probs=163.8
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
++-..-.|++..++.-...+.. ......-.-+.++++..|+++.. ....|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 3445567888888873333222 11223333456778877776642 12334443444444433 322
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCC-ccCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF-VLDLETFNSLIETICKSGEVEFCVEMYYS 182 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 182 (329)
+...+++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677788777655 45566667888889999999999999998877654 12566778888999999999999999999
Q ss_pred HHHcCCCC-----chhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 183 VCKLGLCA-----DVSTYKILIPAV--SKAG--MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 183 ~~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
|.+. .| +..+...+..++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9775 34 356666666663 3334 899999999998765 244333344445888999999999999876
Q ss_pred HHcC---------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 254 KIKG---------HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 254 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
.+.. -+.|..++..++......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6430 13466777566666666776 7889999988754
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.34 E-value=3.5e-11 Score=106.50 Aligned_cols=174 Identities=10% Similarity=-0.083 Sum_probs=116.9
Q ss_pred HccCchhHHHHHHHHhh--------hcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 28 GKHGLVDNAVEVFNKCT--------AFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+... -+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 56777777777777776 433 55667777777777777777777777777776532 255677777777777
Q ss_pred cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHH
Q 020193 100 SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM 179 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 179 (329)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.+.. +...+..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777654 3456667777777777777777 7777777766433 566777777777777777777777
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 180 YYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
|++..+.++ .+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 777665432 234455555555544443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2.4e-10 Score=78.88 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLL 133 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 133 (329)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 455566666666666666666666665432 244555556666666666666666666665543 333445555556666
Q ss_pred hcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 134 NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 134 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
..|++++|.+.++++.+.... +...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665554322 344555555555555666666555555544
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.32 E-value=2.4e-10 Score=88.97 Aligned_cols=188 Identities=5% Similarity=-0.075 Sum_probs=114.5
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC---hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCCcc
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD---KRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVR 123 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 123 (329)
+.+...+..+...+.+.|++++|...|+++.+.... + ...+..+..++...|++++|...|+...+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345667777778888888888888888888776322 2 56677788888888888888888888877531 11134
Q ss_pred cHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhH
Q 020193 124 GRDLLVQGLLN--------AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTY 195 (329)
Q Consensus 124 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 195 (329)
.+..+..++.. .|++++|...|+++.+..+. +......+.. +..+.. .....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~----~~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRA----KLARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHH----HHHHHH
Confidence 55666777777 78888888888888776322 2222211100 000000 001113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHcc----------CChhHHHHHHHHHHHc
Q 020193 196 KILIPAVSKAGMIDEAFRLLHNLVEDGHKP--FPSLYAPIIKGMFRR----------GQFDDAFCFFSEMKIK 256 (329)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 256 (329)
..+...|.+.|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 445566666777777777777766543211 233455556666544 6667777777776654
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.32 E-value=4.7e-10 Score=87.63 Aligned_cols=179 Identities=15% Similarity=0.057 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 71 AYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF-NPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
|...|+++...+ .++..++..+..++...|++++|++++.+.+..+- .-+...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444454444333 23333444555555555555555555555544331 1233444455555555555555555555555
Q ss_pred HcCCcc-----CHHhHHHHHHHHH--c--cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 020193 150 KQGFVL-----DLETFNSLIETIC--K--SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 150 ~~~~~~-----~~~~~~~l~~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
+. .| +..+...+..++. . .+++.+|..+|+++.+.. |+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 22 1333333333311 1 225555555555554321 2222222223355555555555555554433
Q ss_pred CC---------CCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 221 DG---------HKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 221 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
.. -+-++.+...+|......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 01133444334433444444 555555555543
No 96
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.32 E-value=2.3e-08 Score=87.62 Aligned_cols=321 Identities=6% Similarity=-0.097 Sum_probs=215.2
Q ss_pred HHhhhh-hCCC-CC-CHHHHHHHHHHHHc---------cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHH--------
Q 020193 4 TIELMK-PYNL-SV-SPQTLSLIIEEFGK---------HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC-------- 63 (329)
Q Consensus 4 ~~~~m~-~~g~-~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 63 (329)
+|+... ..|. .+ +...|...+..... .++++.+..+|+.+.......-..+|......-.
T Consensus 169 ~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~ 248 (679)
T 4e6h_A 169 AFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTAR 248 (679)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHH
Confidence 444432 3465 44 45678887776543 3457788999999885321112334432222111
Q ss_pred -----hcchHHHHHHHHHHHHHc--CC----c-----------c--C------hHHHHHHHHHHHhcC-------chhHH
Q 020193 64 -----EVKLFHGAYALIRRMIRK--GF----V-----------P--D------KRTYAILVNAWCSSG-------KMREA 106 (329)
Q Consensus 64 -----~~~~~~~a~~~~~~~~~~--~~----~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a 106 (329)
...+++.|...+.++... ++ + | + ...|...+..-...+ ..+.+
T Consensus 249 ~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 249 RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 112344555555554321 11 1 1 0 134555554333322 12345
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH-HHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 107 QEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK-QMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
..+|++.... ++-....|...+..+...|+.++|. +++++..... +.+...|...+...-+.|+++.|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6778888766 3567788888888888999999997 9999998753 34666777888888899999999999999876
Q ss_pred cCC---------CC------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCh
Q 020193 186 LGL---------CA------------DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-GQF 243 (329)
Q Consensus 186 ~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 243 (329)
... .| ...+|...+....+.|..+.|..+|.++.+....+....|...+..-.+. ++.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 410 13 23468888888888999999999999998761112334444333333344 458
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhCCchhHHHHHHH
Q 020193 244 DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP--ISRCFDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
+.|..+|+...+. .+.+...+...+......|+.+.|..+|++.......+ ....|...++.-.+.|+.+.+.++.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999887 44466667788888888999999999999998765322 35688888888889999999999999
Q ss_pred HHhhhc
Q 020193 322 LEVSLR 327 (329)
Q Consensus 322 ~~~~~~ 327 (329)
.+.+..
T Consensus 566 R~~~~~ 571 (679)
T 4e6h_A 566 RFFEKF 571 (679)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 887654
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=3.7e-11 Score=85.07 Aligned_cols=144 Identities=11% Similarity=-0.061 Sum_probs=96.7
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
...+...|++++|+..++...... |.+...+..+...|.+.|++++|.+.|++..+.... +..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 344556677788888777776654 444556667777788888888888888887776433 667777777888888888
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHH-HHHHHHcCCccCHHhHHHHHHHHHccC
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM-VNKMIKQGFVLDLETFNSLIETICKSG 171 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (329)
++|...|++..+.. +-+...+..+...|.+.|++++|.+. +++..+..+. ++.+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 88888888777754 34566777777777777777665544 4666665432 5556666555555554
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=4.5e-10 Score=84.20 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC-hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 54 LYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 54 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
.+......+...|++++|...|++..+.. |+ ...|... ...... .........+..++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~~~--------------~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDKNS--------------EISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCTTS--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcchh--------------hhhHHHHHHHHHHH
Confidence 33444556667788888888887777653 22 1111110 000000 01122234588899
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC--HHH
Q 020193 133 LNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM--IDE 210 (329)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ 210 (329)
.+.|++++|...+++..+..+. +...+..+..++...|++++|...|++..+..+ .+..++..+..+|...|+ ...
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999988644 788999999999999999999999999998764 567788888888766554 445
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 270 (329)
+...++.... ..|....+.....++...|++++|...|++..+. .|+......+.+
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 5566655432 2233334444566777889999999999999875 677666555544
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.29 E-value=1e-08 Score=80.79 Aligned_cols=234 Identities=8% Similarity=-0.053 Sum_probs=172.4
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC--chhHHHHHHHHHHhCCCCCCcccHHHHHHHH----Hhc---C
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG--KMREAQEFLQEMSDKGFNPPVRGRDLLVQGL----LNA---G 136 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 136 (329)
...++|+++++.++..++. +...|+.--.++...+ ++++++++++.+.... +-+..+|+.....+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3346899999998887533 5567787777787888 8999999999998875 45566777665555 555 7
Q ss_pred ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC------H
Q 020193 137 YLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE--FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM------I 208 (329)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 208 (329)
++++++++++++.+.... +..+|+.-.-++.+.|.++ ++++.++++.+..+ .|...|+.-.....+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 889999999999988655 7788887777777888877 89999999988765 667777776666666665 7
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHhccCCHHHHHHHH
Q 020193 209 DEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD-AFCFFSEMKIKG--HPPNRPVYTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 209 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (329)
+++++.++.+....+. |...|+.+-..+.+.|+... +..+..++...+ -+.++..+..+..++.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8888888888877544 77778877777777777444 555666665432 1346677888888888889999999999
Q ss_pred HHHHhCCCCCChhhHHHHH
Q 020193 286 VEMTEMGLTPISRCFDLVT 304 (329)
Q Consensus 286 ~~~~~~~~~p~~~~~~~l~ 304 (329)
+.+.+.--+.....|+...
T Consensus 282 ~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHH
Confidence 8887632233444555443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=7.3e-11 Score=86.04 Aligned_cols=161 Identities=14% Similarity=0.053 Sum_probs=93.8
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH-H
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA-W 97 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 97 (329)
.+..+...+.+.|++++|...|+...+.. |.+...+..+...+...|++++|...+++..... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34556667777788888888888777665 5667777778888888888888888877765542 233322222111 1
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-CHHhHHHHHHHHHccCCHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVL-DLETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 176 (329)
...+....+...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122233455555555543 2345555566666666666666666666665553322 234555555666666666666
Q ss_pred HHHHHHH
Q 020193 177 VEMYYSV 183 (329)
Q Consensus 177 ~~~~~~~ 183 (329)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.26 E-value=1.5e-10 Score=91.43 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=131.5
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHH-H
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRD-L 127 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 127 (329)
|.+...+..+...+...|++++|...|++....... +...+..+..++...|++++|...++.+.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 566777888888888999999999999998877533 66788888899999999999999998887653 4433322 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA-DVSTYKILIPAVSKAG 206 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 206 (329)
....+...++.+.|...+++..+.... +...+..+...+...|++++|...|.++.+..+.. +...+..+...+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 233466778888888889888887543 67888889999999999999999999988865432 2667888999999999
Q ss_pred CHHHHHHHHHHHHh
Q 020193 207 MIDEAFRLLHNLVE 220 (329)
Q Consensus 207 ~~~~a~~~~~~~~~ 220 (329)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99988888877543
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.25 E-value=2.3e-09 Score=81.42 Aligned_cols=188 Identities=11% Similarity=-0.001 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh--HHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK--RTY 90 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 90 (329)
++..+..+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++.+.|++++|+..|+++.+..+.... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 45667777888899999999999999998754 222 467888899999999999999999999876432111 234
Q ss_pred HHHHHHHHh------------------cCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 020193 91 AILVNAWCS------------------SGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 91 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
..+..++.. .|++++|...|+++.+.. |-+...+....... .+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH----
Confidence 444444443 456777777777776653 22222222111100 000000
Q ss_pred CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 020193 153 FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223 (329)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (329)
......+...+.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123456778889999999999999887643221 25677888899999999999999998887643
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=3.7e-10 Score=98.15 Aligned_cols=155 Identities=13% Similarity=-0.022 Sum_probs=115.6
Q ss_pred cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999999888776 66788899999999999999999999999887643 3677888899999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc---CCHHHHHHHHHHHHHc
Q 020193 110 LQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS---GEVEFCVEMYYSVCKL 186 (329)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 186 (329)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988765 456778888999999999999999999998887543 677888888888888 9999999999998876
Q ss_pred CC
Q 020193 187 GL 188 (329)
Q Consensus 187 ~~ 188 (329)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 104
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=4.4e-08 Score=85.82 Aligned_cols=143 Identities=8% Similarity=0.003 Sum_probs=94.1
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch---HHHHHHHHHHHHHc
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL---FHGAYALIRRMIRK 81 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~ 81 (329)
++.-...+ |-|...|..++..+.+.+.++.+..+|+.+...- |.+...|...+..-.+.++ ++.+..+|++....
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 34444444 5688889999999888889999999999988774 7788888888888888888 88999999888865
Q ss_pred C-CccChHHHHHHHHHHHhcCch--------hHHHHHHHHHHh-CCC-CC-CcccHHHHHHHHHh---------cCChHH
Q 020193 82 G-FVPDKRTYAILVNAWCSSGKM--------REAQEFLQEMSD-KGF-NP-PVRGRDLLVQGLLN---------AGYLES 140 (329)
Q Consensus 82 ~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~ 140 (329)
. ..|+...|...+....+.++. +.+.++|+.... .|. .+ +...|...+..... .++.+.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 3 136777787777665554443 334466666543 243 33 23456655554332 223455
Q ss_pred HHHHHHHHH
Q 020193 141 AKQMVNKMI 149 (329)
Q Consensus 141 a~~~~~~~~ 149 (329)
+..+|++..
T Consensus 213 ~R~iy~raL 221 (679)
T 4e6h_A 213 IRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 555665555
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.25 E-value=4.2e-09 Score=79.14 Aligned_cols=176 Identities=11% Similarity=0.045 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC----chhHHHHHH
Q 020193 35 NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG----KMREAQEFL 110 (329)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 110 (329)
+|.+.|++..+.| ++..+..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555443 45555555566666666666666666655543 34445555555555 4 566666666
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHcCCc-cCHHhHHHHHHHHHc----cCCHHHHHHHHH
Q 020193 111 QEMSDKGFNPPVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQGFV-LDLETFNSLIETICK----SGEVEFCVEMYY 181 (329)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 181 (329)
++..+.| ++..+..+...|.. .+++++|...|++..+.|.. .++..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 34455555555554 55666666666666655421 014455555555555 556666666666
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 020193 182 SVCKLGLCADVSTYKILIPAVSKA-G-----MIDEAFRLLHNLVEDG 222 (329)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 222 (329)
+..+.+ .+...+..+...|... | ++++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 2333445555555432 2 5666666666666554
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.25 E-value=3e-10 Score=100.59 Aligned_cols=173 Identities=10% Similarity=-0.098 Sum_probs=131.4
Q ss_pred HhcCChHHHHHHHHHHH--------HcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 020193 133 LNAGYLESAKQMVNKMI--------KQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 133 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (329)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.|++..+..+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 67888899998888887 432 22566788888888888999999999988887643 456788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 020193 205 AGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 284 (329)
.|++++|...|++..+.... +...+..+..++...|++++ ...|+++.+.+ +.+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999888876433 56777888888888999988 88888888763 33667788888888889999999998
Q ss_pred HHHHHhCCCCCC-hhhHHHHHHHHHhCCc
Q 020193 285 LVEMTEMGLTPI-SRCFDLVTDGLKNCGK 312 (329)
Q Consensus 285 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 312 (329)
|++..+.. |+ ...+..+..++...|.
T Consensus 557 ~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 88877543 44 5566667777666454
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=3.7e-09 Score=80.22 Aligned_cols=186 Identities=7% Similarity=-0.090 Sum_probs=123.8
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc--ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc----c
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR----G 124 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 124 (329)
+...+..+...+.+.|++++|...|+++.+..+.. ....+..+..++.+.|++++|+..|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34556667788889999999999999998764321 13567788889999999999999999998764 3322 3
Q ss_pred HHHHHHHHHh------------------cCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 020193 125 RDLLVQGLLN------------------AGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL 186 (329)
Q Consensus 125 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 186 (329)
+..+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH---
Confidence 4444444443 34566666666666654211 11121111100 0000000
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 020193 187 GLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP--FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG 257 (329)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 257 (329)
......+...|.+.|++++|...|+++.+..+.. ....+..+..++.+.|++++|.+.++.+...+
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345678899999999999999998764321 12568889999999999999999999988763
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=1.9e-09 Score=81.04 Aligned_cols=176 Identities=15% Similarity=0.122 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----ChHHHHHHH
Q 020193 70 GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG----YLESAKQMV 145 (329)
Q Consensus 70 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 145 (329)
+|++.|++..+.| +...+..+...+...+++++|..+|++..+.| ++..+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555543 44555555566666666666666666665543 34455555555555 4 566666666
Q ss_pred HHHHHcCCccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHh----cCCHHHHHHHHH
Q 020193 146 NKMIKQGFVLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLGLC-ADVSTYKILIPAVSK----AGMIDEAFRLLH 216 (329)
Q Consensus 146 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 216 (329)
++..+.| +...+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 44455555555554 55666666666666554321 014455555555555 556666666666
Q ss_pred HHHhCCCCCChhhHHHHHHHHHcc-C-----ChhHHHHHHHHHHHcC
Q 020193 217 NLVEDGHKPFPSLYAPIIKGMFRR-G-----QFDDAFCFFSEMKIKG 257 (329)
Q Consensus 217 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 257 (329)
+..+.+ .+...+..|...|... | ++++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 1233444455555432 2 5666666666666554
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=8.6e-10 Score=87.06 Aligned_cols=168 Identities=12% Similarity=0.018 Sum_probs=137.2
Q ss_pred ccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHH-H
Q 020193 84 VPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFN-S 162 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 162 (329)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455677788889999999999999999998875 5567888999999999999999999999987763 4443332 2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccC
Q 020193 163 LIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP-FPSLYAPIIKGMFRRG 241 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 241 (329)
....+...++.+.|...+++.....+ .+...+..+...+...|++++|...|.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33346677888889999999888764 567889999999999999999999999999865432 2667899999999999
Q ss_pred ChhHHHHHHHHHHH
Q 020193 242 QFDDAFCFFSEMKI 255 (329)
Q Consensus 242 ~~~~a~~~~~~~~~ 255 (329)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999887654
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.22 E-value=8.8e-10 Score=87.94 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=124.0
Q ss_pred cCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh-cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHH
Q 020193 30 HGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE-VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQE 108 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 108 (329)
.|++++|.+++++..+.. +. .+.. .++++.|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456667777777665532 11 0222 45666666666543 456677888888888
Q ss_pred HHHHHHhCCC---CC--CcccHHHHHHHHHhcCChHHHHHHHHHHHHc----CCcc-CHHhHHHHHHHHHccCCHHHHHH
Q 020193 109 FLQEMSDKGF---NP--PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GFVL-DLETFNSLIETICKSGEVEFCVE 178 (329)
Q Consensus 109 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 178 (329)
.+.+...... .+ -..+|+.+..+|...|++++|...+++..+. |-.. ...++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877654320 00 1346677778888888888888888876543 1111 13456677777777 88888888
Q ss_pred HHHHHHHcCCCC-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCChhHHHH
Q 020193 179 MYYSVCKLGLCA-----DVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKPF-PSLYAPIIKGMFRRGQFDDAFC 248 (329)
Q Consensus 179 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 248 (329)
.|++........ ...++..+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888776532111 1356677777788888888888888776653 11111 1245555666667788888888
Q ss_pred HHHHHH
Q 020193 249 FFSEMK 254 (329)
Q Consensus 249 ~~~~~~ 254 (329)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887776
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.20 E-value=8.3e-10 Score=88.09 Aligned_cols=160 Identities=8% Similarity=-0.065 Sum_probs=81.6
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCC----c-cChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC---CC--CcccHHHH
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGF----V-PDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF---NP--PVRGRDLL 128 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l 128 (329)
...|...|++++|...|.+...... . .-..+|+.+..+|...|++++|...+++..+... .+ ...++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666655543210 0 0123555566666666666666666665543210 01 12344555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCcc-----CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCc-hhhHHHH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVL-----DLETFNSLIETICKSGEVEFCVEMYYSVCKLG----LCAD-VSTYKIL 198 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l 198 (329)
...|.. |++++|+..+++..+..... ...++..+...+...|++++|+..|++..... ..+. ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555555 66666666666555431110 12345555666666666666666666655421 1111 1244444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 020193 199 IPAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~ 219 (329)
..++...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 555555566666666666655
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.19 E-value=1.9e-10 Score=81.37 Aligned_cols=142 Identities=8% Similarity=0.010 Sum_probs=70.5
Q ss_pred HHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHH
Q 020193 61 ALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLES 140 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 140 (329)
.+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3444555666666555544321 1122334445555666666666666666655543 3345555555566666666666
Q ss_pred HHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCchhhHHHHHHHHHhcC
Q 020193 141 AKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEM-YYSVCKLGLCADVSTYKILIPAVSKAG 206 (329)
Q Consensus 141 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (329)
|...|++..+..+. +...+..+...+.+.|+++++.+. +++..+..+ -+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhC
Confidence 66666655555322 445555555555555555443333 344444322 23344444444443333
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.19 E-value=4.7e-10 Score=81.73 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=21.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
...+...|++++|...+++..+.... +...+..+..++...|++++|...+++.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 33344444444444444443332111 2333444444444444444444444443
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.17 E-value=1.7e-09 Score=94.04 Aligned_cols=155 Identities=12% Similarity=-0.017 Sum_probs=120.2
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM 144 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 144 (329)
.|++++|.+.|++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887642 367889999999999999999999999998875 45678889999999999999999999
Q ss_pred HHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 020193 145 VNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA---GMIDEAFRLLHNLVED 221 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 221 (329)
+++..+.... +...+..+..++...|++++|.+.+++..+... .+...+..+..++... |+.++|...+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987543 678899999999999999999999999988754 4577888999999999 9999999999999876
Q ss_pred CC
Q 020193 222 GH 223 (329)
Q Consensus 222 ~~ 223 (329)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.15 E-value=9.1e-08 Score=76.33 Aligned_cols=176 Identities=9% Similarity=-0.011 Sum_probs=129.0
Q ss_pred HHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhc-C-ch
Q 020193 27 FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK-LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS-G-KM 103 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 103 (329)
..+.+..++|+++++.+...+ |-+..+|+.--..+...+ .+++++++++.+.....+ +..+|+.-..++... + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 344455678999999999887 778888888877777777 599999999999887654 677777766666665 6 78
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC---
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE--------SAKQMVNKMIKQGFVLDLETFNSLIETICKSGE--- 172 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 172 (329)
++++++++.+.+.. +.|..+|+....++.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 88999999988765 556777777666666666666 888888888887655 77778777777777665
Q ss_pred ----HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 173 ----VEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 173 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
++++++.+++.....+ -|...|+.+-..+.+.|.
T Consensus 220 ~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5677777777766544 456666665555555444
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.10 E-value=3.1e-08 Score=78.38 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=57.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCc-cC----HHhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCC-chhhHH
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFV-LD----LETFNSLIETICKSGEVEFCVEMYYSVCKL-----GLCA-DVSTYK 196 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~ 196 (329)
+...+...|++++|...+++..+.... ++ ..+++.+..+|...|++++|...|++..+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333444444455555555444442111 11 113444555555555555555555544420 1111 122455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCC-hhHHHHHHHHHH
Q 020193 197 ILIPAVSKAGMIDEAFRLLHNLVED----GHKPF-PSLYAPIIKGMFRRGQ-FDDAFCFFSEMK 254 (329)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 254 (329)
.+...|.+.|++++|...+++..+. +..+. ..+|..+..++...|+ +++|...+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555555555555554421 11111 3445555555666663 356655555544
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.08 E-value=2.1e-08 Score=75.19 Aligned_cols=128 Identities=10% Similarity=-0.095 Sum_probs=101.6
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+..+...+...|++++|...|++.. +|+..++..+...+...|++++|.+.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566777888899999999988774 4578888889999999999999999998888764 336678888888899
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPV----------------RGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
..|++++|...++...+.. +.+. ..+..+..++.+.|++++|...+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999998887753 2222 566777788888888888888888887764
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.07 E-value=9.9e-07 Score=74.87 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=77.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFR-RGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMC 272 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 272 (329)
.|...+....+.+..+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.. +-++..+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3445555555667788888888887 32 12233344322222222 236888888888887752 22344555666666
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 273 GRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
.+.|+.+.|..+|+++. .....|...++.-...|+.+.+.++++...
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67788888888888762 246677777776677788888888666554
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.07 E-value=9.8e-08 Score=75.51 Aligned_cols=162 Identities=9% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-ccCH----HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc----hhhHHH
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGF-VLDL----ETFNSLIETICKSGEVEFCVEMYYSVCKLGLC-AD----VSTYKI 197 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 197 (329)
.+..+...|++++|...+++..+... .|+. ..+..+...+...+++++|...+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 36677888889999988888876422 1221 12334666677778899999999888774322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC-----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC-hhhHH
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVED-----GHKP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----GHPPN-RPVYT 266 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 266 (329)
+..+|...|++++|...++++.+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888899999999988887731 1111 1236777888888888888888888877643 11222 46777
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHH
Q 020193 267 MLITMCGRGG-RFVEAANYLVEMT 289 (329)
Q Consensus 267 ~l~~~~~~~~-~~~~a~~~~~~~~ 289 (329)
.+..++.+.| ++++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 7888888888 4688888887765
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.07 E-value=1.7e-09 Score=85.09 Aligned_cols=196 Identities=14% Similarity=-0.002 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
.+...+..+...+.+.|++++|...|+...+.. |.+...|..+..++.+.|++++|...+++..+... .+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 356777888888888889999998888888776 66788888888888888888888888888876542 3567788888
Q ss_pred HHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHH
Q 020193 95 NAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE 174 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (329)
.++...|++++|...+++..+.. +.+...+...+....+. ..+. .+..........+......+.. + ..|+++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 88888888888888888876543 11111222222222211 1111 1222222333334444333322 2 257777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 020193 175 FCVEMYYSVCKLGLCADVSTYKILIPAVSKA-GMIDEAFRLLHNLVE 220 (329)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 220 (329)
+|.+.++...+..+ .+......+...+.+. +.++++..+|..+.+
T Consensus 153 ~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 78777776665432 2233333333334443 557778888877654
No 121
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.07 E-value=2.1e-07 Score=74.24 Aligned_cols=225 Identities=8% Similarity=-0.050 Sum_probs=155.4
Q ss_pred HHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC-chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-C-Ch
Q 020193 62 LCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG-KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA-G-YL 138 (329)
Q Consensus 62 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 138 (329)
..+.+..++|+++++.++..+.. +..+|+.--.++...| .+++++.+++.+.... +-+..+|+....++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 33445557899999999987543 5667777777777778 5999999999998876 56677888887777776 7 88
Q ss_pred HHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC---
Q 020193 139 ESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVE--------FCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM--- 207 (329)
Q Consensus 139 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 207 (329)
++++++++++.+.... +..+|+.-.-++.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccccc
Confidence 9999999999987644 7777776555555555555 88888888888765 677778877777777665
Q ss_pred ----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh--------------------hHHHHHHHHHHHcC-----C
Q 020193 208 ----IDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF--------------------DDAFCFFSEMKIKG-----H 258 (329)
Q Consensus 208 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 258 (329)
++++++.+++.....+. |...|+.+-..+.+.|+. .....+...+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 67888888887776543 666776665556555543 22222222222211 1
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 020193 259 PPNRPVYTMLITMCGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 259 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 291 (329)
.+++..+..++..|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 346666777777777778888888888777643
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.06 E-value=2.6e-08 Score=74.73 Aligned_cols=131 Identities=11% Similarity=-0.046 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
..+..+...+...|++++|...|++. +.|+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556677777888888888888766 35577788888888888888888888888887764 45567788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCcc---------------CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 020193 133 LNAGYLESAKQMVNKMIKQGFVL---------------DLETFNSLIETICKSGEVEFCVEMYYSVCKLGL 188 (329)
Q Consensus 133 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 188 (329)
...|++++|...+++..+..... ....+..+..++...|++++|...|+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 88888888888888887753221 125667777777888888888888887776543
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=1.7e-08 Score=72.38 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444444555555555555555554443 3344455555555555555555555555544432 1133444444444445
Q ss_pred cCchhHHHHHHHHHHh
Q 020193 100 SGKMREAQEFLQEMSD 115 (329)
Q Consensus 100 ~~~~~~a~~~~~~~~~ 115 (329)
.|++++|...+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555544444
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=1.2e-08 Score=69.66 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+......+.+.|++++|++.|++..+.+ |.+..+|..+..++.+.|++++|+..|++..+.+.. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 34444555555555555555555555444 444555555555555555555555555555544321 3444555555555
Q ss_pred hcCchhHHHHHHHHHHhC
Q 020193 99 SSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (329)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 555555555555555443
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.01 E-value=9.1e-08 Score=75.69 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=80.8
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHhcCChHHHHHHHHHHHHcCC---ccC--HHhH
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPP-----VRGRDLLVQGLLNAGYLESAKQMVNKMIKQGF---VLD--LETF 160 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~ 160 (329)
...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|...+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344445555555555555555444321100 01122344445555566666666555543211 111 2355
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH---cCC-CC--chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-Chhh
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCK---LGL-CA--DVSTYKILIPAVSKAGMIDEAFRLLHNLVED----GHKP-FPSL 229 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 229 (329)
+.+...|...|++++|...+++..+ ... .+ ...++..+..+|...|++++|...+++..+. +... -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5566666666666666666665542 111 01 1135566666666666666666666665432 1111 1345
Q ss_pred HHHHHHHHHccCChhHH-HHHHHHHH
Q 020193 230 YAPIIKGMFRRGQFDDA-FCFFSEMK 254 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a-~~~~~~~~ 254 (329)
|..+...|...|++++| ...+++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56666666666666666 55555544
No 126
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=1.8e-07 Score=73.96 Aligned_cols=161 Identities=11% Similarity=0.030 Sum_probs=73.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--hhhHHH
Q 020193 163 LIETICKSGEVEFCVEMYYSVCKLGLCAD-----VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH---KPF--PSLYAP 232 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~ 232 (329)
.+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34444455555555555544443321110 01122233344455555555555555543211 111 224555
Q ss_pred HHHHHHccCChhHHHHHHHHHHHc-CCCCC-----hhhHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHH
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIK-GHPPN-----RPVYTMLITMCGRGGRFVEAANYLVEMTEM----GLTP-ISRCFD 301 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~ 301 (329)
+...|...|++++|...++++.+. ...|+ ..++..+..+|...|++++|...+++..+. +... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 555555556666665555555421 00111 134555555555666666666655554421 1111 134555
Q ss_pred HHHHHHHhCCchhHH-HHHHHHH
Q 020193 302 LVTDGLKNCGKHDLA-EKIELLE 323 (329)
Q Consensus 302 ~l~~~~~~~g~~~~a-~~~~~~~ 323 (329)
.+..+|.+.|++++| ...++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 555566666666666 4444433
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=1.6e-08 Score=68.94 Aligned_cols=99 Identities=6% Similarity=-0.053 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+......+.+.|++++|++.|++..+... .+...|..+..++...|++++|+..+++..+.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 45566666677777777777777777666542 255666666777777777777777777766654 3445566666666
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 020193 132 LLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~ 152 (329)
+...|++++|.+.|++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHC
Confidence 777777777777777666653
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=2.4e-08 Score=67.66 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555556666666666666666655543 4445555555556666666666666665555442 2244455555555
Q ss_pred HHhcCchhHHHHHHHHHHhC
Q 020193 97 WCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~ 116 (329)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555555443
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-08 Score=69.04 Aligned_cols=119 Identities=13% Similarity=0.017 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHH
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAIL 93 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 93 (329)
+.++..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 4455667777777777777777777777776654 55666777777777777777777777777766532 245566666
Q ss_pred HHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 94 VNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
..++...|++++|.+.+++..+.. +.+...+..+..++.+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 667777777777777777666543 22334444444444443
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.00 E-value=1.9e-09 Score=87.09 Aligned_cols=143 Identities=8% Similarity=-0.071 Sum_probs=84.6
Q ss_pred CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--------------hHHHHHHHHH
Q 020193 31 GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--------------KRTYAILVNA 96 (329)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 96 (329)
+++++|...|+...... +.+...+..+...+.+.|++++|...|++..+...... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444332 33566777777788888888888888887776532211 3555666666
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHH
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFC 176 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 176 (329)
+.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 334555556666666666666666666666555322 445555555555555555555
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.99 E-value=2.6e-09 Score=75.29 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=76.3
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
|.+...+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++..+.. |.++..|..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 44566777777778888888888888888777643 266777777788888888888888888877764 4456777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
..+|.+.|++++|...|++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 788888888888888888777763
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=1.5e-08 Score=69.29 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...+..+...+...|++++|...|+...... +.+...+..+...+...|++++|.+.+++...... .+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3444555555555555555555555555443 33445555555555555555555555555554321 134444445555
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (329)
+...|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 555555555555555554432 223334444444444433
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=7e-09 Score=75.45 Aligned_cols=122 Identities=9% Similarity=0.071 Sum_probs=90.8
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH-HHhcCch--h
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA-WCSSGKM--R 104 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 104 (329)
...|++++|...++...+.. |.+...|..+...+...|++++|...|++..+... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887766 66778888888888888888888888888877642 256667777777 6678887 8
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 020193 105 EAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 105 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
+|...++...+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887764 3456677778888888888888888888887764
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=5.6e-08 Score=69.60 Aligned_cols=129 Identities=11% Similarity=-0.024 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34455666666667777777777766665432 245566666666666666666666666665543 3345555666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHhHH--HHHHHHHccCCHHHHHHHHHHH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFN--SLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
+...|++++|...+++..+.... +...+. .....+...|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666666554322 333332 2222244455555555555543
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.96 E-value=2.7e-06 Score=72.26 Aligned_cols=293 Identities=8% Similarity=-0.047 Sum_probs=154.9
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch-HHHHHHHHHHHHHc-CC-ccChHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL-FHGAYALIRRMIRK-GF-VPDKRTYA 91 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~ 91 (329)
--..+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. ..+...|.
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 334555555555544 6677777777776663 3566666666666655542 34455556555543 32 22445555
Q ss_pred HHHHHHH----hcCchhHHHHHHHHHHhCCCCC-----------------------------------------------
Q 020193 92 ILVNAWC----SSGKMREAQEFLQEMSDKGFNP----------------------------------------------- 120 (329)
Q Consensus 92 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~----------------------------------------------- 120 (329)
..+..+. ..++.+.+.++|+.........
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 5555433 2345566666666665521100
Q ss_pred -CcccHHHHHHHHHhc--CC-----hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCch
Q 020193 121 -PVRGRDLLVQGLLNA--GY-----LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADV 192 (329)
Q Consensus 121 -~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 192 (329)
+...|...+..-... |- .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... + .+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcH
Confidence 111222222211111 00 223455666666543 224566666677777777788888888777766 2 232
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDG---------HKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
..+. .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+++ .. .+.
T Consensus 247 ~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~ 317 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGV 317 (493)
T ss_dssp HHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCC
T ss_pred HHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCC
Confidence 2222 12221111111 22222110 000 1234555666666678899999999998 32 122
Q ss_pred ChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHH
Q 020193 261 NRPVYTMLITMCGR-GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLE 323 (329)
Q Consensus 261 ~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 323 (329)
+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|+.+++..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344322222222 336899999999988643 223556677788778889999999888764
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=1.4e-08 Score=71.50 Aligned_cols=109 Identities=14% Similarity=0.012 Sum_probs=64.4
Q ss_pred HHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Q 020193 40 FNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFN 119 (329)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 119 (329)
|+.+...+ |.+...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...|++..... +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 33444433 34455556666666666666666666666665432 255556666666666666666666666665543 3
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.+...+..+..++...|++++|...|++..+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666554
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.94 E-value=1.7e-08 Score=79.34 Aligned_cols=196 Identities=12% Similarity=-0.013 Sum_probs=130.9
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
.+...+..+...+...|++++|...|++...... .+...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567788889999999999999999999988743 277889999999999999999999999998875 45677888999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (329)
.++...|++++|...|++..+.+.. +...+...+....+ ..++.. +..........+......+.. + ..|+.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 9999999999999999988775321 11111111111111 111111 222223333344444333322 2 268888
Q ss_pred HHHHHHHHHHhCCCCCCh-hhHHHHHHHHHcc-CChhHHHHHHHHHHHc
Q 020193 210 EAFRLLHNLVEDGHKPFP-SLYAPIIKGMFRR-GQFDDAFCFFSEMKIK 256 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 256 (329)
+|.+.++...+. .|+. .....+...+.+. +.+++|.++|..+.+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 898888877664 3443 3333333334444 5678899999877653
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.94 E-value=1.5e-08 Score=71.38 Aligned_cols=103 Identities=13% Similarity=-0.014 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
++..+..+...+.+.|++++|...|+.....+ |.+...|..+..++...|++++|+..|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 45678888899999999999999999999987 888999999999999999999999999999987543 6788999999
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCc
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPV 122 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 122 (329)
++...|++++|...|++..+.. |+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 9999999999999999998864 544
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=7.8e-08 Score=65.02 Aligned_cols=98 Identities=15% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4556666666666666666666666666543 2244556666666666666666666666665543 3344555556666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 020193 132 LLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~ 151 (329)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665554
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=9e-08 Score=73.87 Aligned_cols=187 Identities=10% Similarity=-0.082 Sum_probs=104.0
Q ss_pred ccCchhHHHHHHHHhhhcCCCccHHHHHHH-------HHHHHhcchHHHHHHHHHHHHHcCCccC---------------
Q 020193 29 KHGLVDNAVEVFNKCTAFNCQQCVLLYNSL-------LFALCEVKLFHGAYALIRRMIRKGFVPD--------------- 86 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 86 (329)
..++...|.+.|.++.+.+ |-....|..+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888888776 6677778777 4555555555555555544433 1221
Q ss_pred -------hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC--H
Q 020193 87 -------KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLD--L 157 (329)
Q Consensus 87 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 157 (329)
......+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1123344555666667777776666665443 322244444555666666666666665433221 110 1
Q ss_pred HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 158 ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 158 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455555666666666666666666553221122 223444455555666666666666666554
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.92 E-value=3.2e-08 Score=73.55 Aligned_cols=156 Identities=12% Similarity=-0.020 Sum_probs=87.2
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc----CC-ccChHHHHHHHHHHHhcCc
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK----GF-VPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 102 (329)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +. .....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456778888875554433 21345667777777888888888888888776652 11 1133456666677777777
Q ss_pred hhHHHHHHHHHHhCC--CC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHc----CCcc-CHHhHHHHHHHHHccC
Q 020193 103 MREAQEFLQEMSDKG--FN----PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GFVL-DLETFNSLIETICKSG 171 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~ 171 (329)
+++|...+++..+.. .+ .....+..+...+...|++++|...+++..+. +... ...++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 777777776664430 01 11233555666666667777776666665432 1000 0122344555555566
Q ss_pred CHHHHHHHHHHHH
Q 020193 172 EVEFCVEMYYSVC 184 (329)
Q Consensus 172 ~~~~a~~~~~~~~ 184 (329)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666655555543
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=4.8e-08 Score=66.73 Aligned_cols=119 Identities=11% Similarity=-0.057 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45556666666666667777777666666543 2245556666666666666666666666665543 333455555666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE 172 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (329)
.+...|++++|...+++..+.... +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 666666666666666666555322 44444455454444443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=5.7e-08 Score=66.66 Aligned_cols=101 Identities=11% Similarity=0.028 Sum_probs=60.9
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL 128 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 128 (329)
+.+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34455666666666666666666666666665432 245556666666666666666666666665543 3344555556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 020193 129 VQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 129 ~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..++.+.|++++|.+.+++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666665554
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.89 E-value=6.2e-09 Score=77.28 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=76.0
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC---------------hH
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD---------------KR 88 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 88 (329)
+......|+++.+.+.|+.-.... +.....+..+...+...|++++|...|++..+...... ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344445566666666665433221 23455677777778888888888888888776422111 14
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETIC 168 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (329)
.+..+..++...|++++|...++...+.. +.+...+..+..++...|++++|...|++..+.... +...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 55555555566666666666666555543 334445555555555566666666666555554322 3444444444444
Q ss_pred ccCCHHH
Q 020193 169 KSGEVEF 175 (329)
Q Consensus 169 ~~~~~~~ 175 (329)
..++.++
T Consensus 168 ~~~~~~~ 174 (198)
T 2fbn_A 168 KLKEARK 174 (198)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 4444333
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=4.2e-08 Score=72.88 Aligned_cols=119 Identities=11% Similarity=0.008 Sum_probs=54.8
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC----CC-CCCcccHHHHHHHHHhcCCh
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK----GF-NPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 138 (329)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664433322 11223445556666666666666666666655431 10 11123344455555555555
Q ss_pred HHHHHHHHHHHHc----CCcc--CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 020193 139 ESAKQMVNKMIKQ----GFVL--DLETFNSLIETICKSGEVEFCVEMYYSV 183 (329)
Q Consensus 139 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 183 (329)
++|...+++..+. +..+ ....+..+...+...|++++|...+++.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555544332 1010 1223444444455555555555555444
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.88 E-value=6.2e-08 Score=78.21 Aligned_cols=132 Identities=10% Similarity=0.024 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---------------HHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---------------VLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
+...+..+...+.+.|++++|...|++..+.. +.+ ..+|..+..++.+.|++++|+..+++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678889999999999999999999998876 444 58999999999999999999999999998
Q ss_pred cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 020193 81 KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA-KQMVNKMIK 150 (329)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 150 (329)
... .+...+..+..++...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ...+..|..
T Consensus 225 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 753 377889999999999999999999999998875 45677888899999999999888 446666543
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.87 E-value=3.8e-08 Score=71.51 Aligned_cols=122 Identities=10% Similarity=0.087 Sum_probs=80.6
Q ss_pred HhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCh--H
Q 020193 63 CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG-LLNAGYL--E 139 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 139 (329)
...|++++|...+++...... .+...+..+...+...|++++|...+++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777766542 356677777777777788888887777776653 3455566666666 6677776 7
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 187 (329)
+|...+++..+.... +...+..+..++...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777766432 45666677777777777777777777776654
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.86 E-value=4.2e-08 Score=68.50 Aligned_cols=99 Identities=14% Similarity=-0.018 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...+..+...+.+.|++++|...|++...... .+...|..+..++...|++++|...|+...... +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 344444455555555555555555555554432 244455555555555555555555555555443 333444555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 020193 131 GLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~ 151 (329)
++...|++++|...|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555555443
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.86 E-value=7.3e-08 Score=67.75 Aligned_cols=100 Identities=12% Similarity=0.011 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+.+.|++++|...|+.....+ |.+...|..+..++...|++++|...|++...... .+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 55677888899999999999999999999887 77899999999999999999999999999998753 36778899999
Q ss_pred HHHhcCchhHHHHHHHHHHhCC
Q 020193 96 AWCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~ 117 (329)
++...|++++|...|+...+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999997753
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.85 E-value=1.7e-05 Score=63.03 Aligned_cols=137 Identities=10% Similarity=0.076 Sum_probs=80.1
Q ss_pred ccCchh-HHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 29 KHGLVD-NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL----------FHGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 29 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
+.|.++ +|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+....++ +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445444 6777777777766 5566666654444433332 45666666666665433 555666555555
Q ss_pred HhcC--chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHc
Q 020193 98 CSSG--KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY-LESAKQMVNKMIKQGFVLDLETFNSLIETICK 169 (329)
Q Consensus 98 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (329)
...+ ++++++.+++.+.+.. +.|..+|+....++...|. ++++++.++++.+..+. |...|+.....+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 5555 3666777777766654 4456666666666666666 46666666666666544 55555554444433
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.85 E-value=5.1e-06 Score=65.99 Aligned_cols=232 Identities=8% Similarity=-0.001 Sum_probs=139.1
Q ss_pred HHHHHHHHHHH---HhcchHH-HHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc----------hhHHHHHHHHHHhCC
Q 020193 52 VLLYNSLLFAL---CEVKLFH-GAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK----------MREAQEFLQEMSDKG 117 (329)
Q Consensus 52 ~~~~~~l~~~~---~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 117 (329)
+..|..+.... .+.|.+. +|+++++.+...++. +...|+.--.++...+. +++++.+++.+....
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44454444433 3445544 788888888876432 44455543333333332 567778888877764
Q ss_pred CCCCcccHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCchhh
Q 020193 118 FNPPVRGRDLLVQGLLNAGY--LESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-VEFCVEMYYSVCKLGLCADVST 194 (329)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 194 (329)
+-+..+|+.-..++.+.|+ +++++.+++++.+.... |...|+.-.-++...|. ++++++.++.+.+..+ .|...
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SA 181 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSS 181 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHH
Confidence 4567777777777777774 78888888888887644 77777777666777777 5788888888887665 56667
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-----------CChhHHHHH
Q 020193 195 YKILIPAVSKA--------------GMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-----------GQFDDAFCF 249 (329)
Q Consensus 195 ~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~ 249 (329)
|+.....+.+. +.++++.+.+.......+. |...|+-+-..+.+. +.++++++.
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~ 260 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELES 260 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHH
Confidence 76666555544 3466677777776665433 555555443333333 235566666
Q ss_pred HHHHHHcCCCCChhhHHHHHHH-----HhccCCHHHHHHHHHHHHhC
Q 020193 250 FSEMKIKGHPPNRPVYTMLITM-----CGRGGRFVEAANYLVEMTEM 291 (329)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~ 291 (329)
++++.+. .|+. .|..+..+ ....|..+++...+.++++.
T Consensus 261 ~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 261 CKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 6666654 2332 23221111 11345555666666666643
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2.2e-07 Score=62.06 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
+..+..+...+...|++++|...|+...... |.+...+..+...+...|++++|...+++..+... .+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4455666666666677777777777666554 44566666666666666666666666666665532 245556666666
Q ss_pred HHhcCchhHHHHHHHHHHhC
Q 020193 97 WCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~ 116 (329)
+...|++++|...++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 153
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=8.2e-08 Score=74.08 Aligned_cols=187 Identities=8% Similarity=-0.124 Sum_probs=115.8
Q ss_pred hcchHHHHHHHHHHHHHcCCccChHHHHHH-------HHHHHhcCchhHHHHHHHHHHhCCCCCCc--------------
Q 020193 64 EVKLFHGAYALIRRMIRKGFVPDKRTYAIL-------VNAWCSSGKMREAQEFLQEMSDKGFNPPV-------------- 122 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 122 (329)
..++.+.|.+.|.++.+..+. ....|..+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888877433 55667666 3455555555555554444433 11211
Q ss_pred --------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--h
Q 020193 123 --------RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCAD--V 192 (329)
Q Consensus 123 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 192 (329)
.....+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 112335566777788888888887776654 332255555567777888888888876443321 111 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 193 STYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3566667777778888888888887764332143 234555666777778888888888777765
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.83 E-value=5.3e-08 Score=67.94 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+.+.|++++|...|+.....+ |.+...|..+..++...|++++|...|++...... .+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 44567778888999999999999999999887 77899999999999999999999999999998753 36778889999
Q ss_pred HHHhcCchhHHHHHHHHHHhCC
Q 020193 96 AWCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~ 117 (329)
++...|++++|...|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999997754
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.3e-07 Score=63.12 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=24.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
+..+...+.+.|++++|+..|++..+.+ |.+...|..+..++.+.|++++|+..+++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333334444444444444444443333 33333444444444444444444444444333
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.8e-07 Score=63.70 Aligned_cols=100 Identities=14% Similarity=-0.024 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...+..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456788889999999999999999999998753 377889999999999999999999999998875 456788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcC
Q 020193 131 GLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
++...|++++|...+++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999988763
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=2.3e-07 Score=63.27 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=54.7
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cC----hHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PD----KRTYAI 92 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 92 (329)
.+..+...+.+.|++++|+..|++..+.+ |.+...|+.+..+|...|++++|++.+++..+.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666666666666666666666655 555666666666666666666666666665543211 01 123444
Q ss_pred HHHHHHhcCchhHHHHHHHHHHh
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555555555555544
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.76 E-value=7e-07 Score=59.54 Aligned_cols=98 Identities=16% Similarity=0.023 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+...|++++|...|++...... .+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44555566666666666666666666665432 245555666666666666666666666665543 2344555555666
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 020193 132 LLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~ 151 (329)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666665554
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=2.5e-07 Score=61.18 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc--ChHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP--DKRTYAIL 93 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 93 (329)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666677777777777777777776655 5566667777777777777777777777766653 22 35566666
Q ss_pred HHHHHhc-CchhHHHHHHHHHHhCC
Q 020193 94 VNAWCSS-GKMREAQEFLQEMSDKG 117 (329)
Q Consensus 94 ~~~~~~~-~~~~~a~~~~~~~~~~~ 117 (329)
..++... |++++|.+.++......
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6777777 77777777777766553
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=3.2e-07 Score=65.66 Aligned_cols=99 Identities=8% Similarity=-0.030 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777777777777777777777777765 556777777777777777777777777777766422 5666777777
Q ss_pred HHHhcCchhHHHHHHHHHHhC
Q 020193 96 AWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~ 116 (329)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=4.2e-07 Score=62.70 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILV 94 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 94 (329)
.++..+..+...+...|++++|...|+...... |.+...|..+..++...|++++|...+++..+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 345556666666666666666666666665554 445566666666666666666666666666554322 445555566
Q ss_pred HHHHhcCchhHHHHHHHHHHh
Q 020193 95 NAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~ 115 (329)
.++...|++++|...++...+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655544
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.8e-07 Score=63.78 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cC----hHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PD----KRTY 90 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 90 (329)
+..+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++....... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4556667777777777777777777777665 556677777777777777777777777776654321 11 4556
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
..+..++...|++++|.+.++...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666777777777777666654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=3e-07 Score=68.10 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccH----------------HHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV----------------LLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
...+..+...+...|++++|...|++..+.. +.+. .++..+..++...|++++|+..+++..+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3457778888999999999999999998754 3233 7889999999999999999999999998
Q ss_pred cCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH-HHHHHHHH
Q 020193 81 KGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK-QMVNKMIK 150 (329)
Q Consensus 81 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 150 (329)
.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++..++. ..+..+..
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 74 3367889999999999999999999999998764 445667777777777777766665 44554443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=8.2e-07 Score=62.01 Aligned_cols=99 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAI 92 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (329)
+...+..+...+...|++++|.+.|+...+.. +.+ ...+..+..++...|++++|...+++..+... .+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHH
Confidence 45556666666666666666666666666544 222 45555666666666666666666666555422 24445555
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhC
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
+..++...|++++|...+++....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555666666666666666665544
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=3.2e-06 Score=70.64 Aligned_cols=197 Identities=12% Similarity=0.009 Sum_probs=101.3
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccCh----------------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC-CC
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDK----------------RTYAILVNAWCSSGKMREAQEFLQEMSDKGFN-PP 121 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 121 (329)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+...--. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34566777788888877777765322211 12455666666677777776666665432101 11
Q ss_pred c----ccHHHHHHHHHhcCChHHHHHHHHHHHHc----CCccC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHc--CC--
Q 020193 122 V----RGRDLLVQGLLNAGYLESAKQMVNKMIKQ----GFVLD-LETFNSLIETICKSGEVEFCVEMYYSVCKL--GL-- 188 (329)
Q Consensus 122 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 188 (329)
. .+.+.+-..+...|+++.|..++.+.... +..+. ..++..+...+...|++++|..++.+.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222333446666666666654432 11111 334555666666666666666666665432 11
Q ss_pred CC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC-C--hhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 189 CA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVED---GHKP-F--PSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 189 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
.+ ...++..++..|...|++++|..+++..... ...| . ...+..+...+...|++++|...|.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1335556666666666666666666655432 1111 1 12344444555556666666666655554
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=5.9e-07 Score=59.30 Aligned_cols=93 Identities=14% Similarity=-0.017 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--chhhHHHHHHHH
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCA--DVSTYKILIPAV 202 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 202 (329)
+..+...+...|++++|...+++..+.... +...+..+..++...|++++|...+++..+... . +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHH
Confidence 333444444444444444444444433211 233333444444444444444444444433221 1 233333333444
Q ss_pred Hhc-CCHHHHHHHHHHHH
Q 020193 203 SKA-GMIDEAFRLLHNLV 219 (329)
Q Consensus 203 ~~~-~~~~~a~~~~~~~~ 219 (329)
... |++++|.+.++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp TTCSSCSHHHHHHHHHHG
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 444 44444444444433
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.67 E-value=9.3e-07 Score=63.21 Aligned_cols=100 Identities=15% Similarity=0.002 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
.+...+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|+..+++..+.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 44566777777777778888888888777765422 56677777777777777777777777777654 34466677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.++...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777777665
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=7.7e-07 Score=60.62 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCC----cccHH
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPP----VRGRD 126 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 126 (329)
..+..+...+.+.|++++|++.|++..+..+ -+...|..+..++...|++++|+..+++..+... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4455666666667777777777766666532 2455666666666666777776666666654320 000 11344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
.+..++...|++++|++.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445555556666666666555543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.8e-06 Score=60.25 Aligned_cols=101 Identities=13% Similarity=0.000 Sum_probs=73.6
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC----hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCccc
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD----KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG 124 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 124 (329)
+.+...+..+...+...|++++|.+.|++..+. .|+ ...+..+..++...|++++|...++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 345677777888888888888888888887765 344 5667777777778888888888887776653 334566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 152 (329)
+..+..++...|++++|...+++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6777777777788888887777777653
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2.8e-06 Score=71.04 Aligned_cols=198 Identities=10% Similarity=0.027 Sum_probs=141.2
Q ss_pred HHHHHHhcCchhHHHHHHHHHHhCCCCCCc----------------ccHHHHHHHHHhcCChHHHHHHHHHHHHcCC-cc
Q 020193 93 LVNAWCSSGKMREAQEFLQEMSDKGFNPPV----------------RGRDLLVQGLLNAGYLESAKQMVNKMIKQGF-VL 155 (329)
Q Consensus 93 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 155 (329)
-...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+.++...-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 356678899999999999999876422111 1267788999999999999999988765411 11
Q ss_pred CH----HhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 020193 156 DL----ETFNSLIETICKSGEVEFCVEMYYSVCKL----GLCA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVED--GH- 223 (329)
Q Consensus 156 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 223 (329)
+. .+.+.+-..+...|+++.+..++...... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 12333344445678899999999887542 2222 2457788899999999999999999987643 11
Q ss_pred -CC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 224 -KP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----GHPPN--RPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 224 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...+.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2356888889999999999999999887643 11111 24566677778889999999999888764
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=1.2e-06 Score=60.42 Aligned_cols=99 Identities=12% Similarity=-0.017 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHH
Q 020193 50 QCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLV 129 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 129 (329)
.+...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++...+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 3455555556666666666666666665555432 234555555555555666666666555555543 23344555555
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 020193 130 QGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~ 150 (329)
.++...|++++|...+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555544
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=3.9e-07 Score=62.10 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCC----cccH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGF--NPP----VRGR 125 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 125 (329)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...++....... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3455666666666777777777776666553 22455566666666666666666666666654321 111 3445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 126 DLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 126 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..+..++...|++++|.+.+++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555566666666666666665554
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=7.4e-08 Score=81.18 Aligned_cols=117 Identities=12% Similarity=-0.002 Sum_probs=57.0
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC--------------hHHHHHHHHHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD--------------KRTYAILVNAW 97 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 97 (329)
++++|...|+...... +.....|..+...+.+.|++++|...|++..+...... ...|..+..++
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444544444333322 23455667777777777777777777777765421111 23344444444
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIK 150 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 150 (329)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444432 22333344444444444444444444444443
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.63 E-value=5.7e-07 Score=60.70 Aligned_cols=96 Identities=13% Similarity=-0.105 Sum_probs=69.0
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+..+...+.+.|++++|...|+...+.. |.+...|..+..++...|++++|+..|++..+.... +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34555666777788888888888777766 667777777777777778888888887777766432 5566777777777
Q ss_pred hcCchhHHHHHHHHHHhC
Q 020193 99 SSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~ 116 (329)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777654
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.57 E-value=2.7e-06 Score=57.85 Aligned_cols=94 Identities=20% Similarity=0.109 Sum_probs=56.6
Q ss_pred HHHHHHHHccCchhHHHHHHHHhhhcCCCccH---HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC---hHHHHHHH
Q 020193 21 SLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCV---LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD---KRTYAILV 94 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 94 (329)
..+...+...|++++|...|+.+.+.. |.+. ..+..+..++...|++++|...|++..+.... + ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 344555666677777777777666544 3333 45666666666667777777766666654322 2 34455566
Q ss_pred HHHHhcCchhHHHHHHHHHHhC
Q 020193 95 NAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
.++...|++++|...++.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=3.7e-07 Score=77.29 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=98.9
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.+...+.+.|++++|.+.|++..+.. |.+..+|..+..++.+.|++++|.+.+++..+... .+...+..+..++...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34455678899999999999999876 67799999999999999999999999999998753 36788999999999999
Q ss_pred chhHHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChHHHHHHHH
Q 020193 102 KMREAQEFLQEMSDKGFNPPVRGRDLLVQG--LLNAGYLESAKQMVN 146 (329)
Q Consensus 102 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 146 (329)
++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998764 3345566666666 888899999999988
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.55 E-value=2.1e-06 Score=72.32 Aligned_cols=130 Identities=9% Similarity=0.022 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---------------HHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---------------VLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
...+..+...+.+.|++++|...|++..+.. +.+ ..+|..+..++.+.|++++|+..+++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567888899999999999999999998765 333 688999999999999999999999999987
Q ss_pred CCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHH-HHHHHH
Q 020193 82 GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQ-MVNKMI 149 (329)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 149 (329)
.. .+...|..+..++...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+ .+..|.
T Consensus 347 ~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 DS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 377889999999999999999999999998875 4566788888888888888877764 444443
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=1.9e-06 Score=58.03 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSK 204 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (329)
+..+...+.+.|++++|...+++..+.... +...|..+..++...|++++|+..|++..+..+ .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 334444555555555555555555554322 445555555555555555555555555555432 234455555555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 020193 205 AGMIDEAFRLLHNLVE 220 (329)
Q Consensus 205 ~~~~~~a~~~~~~~~~ 220 (329)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.51 E-value=1.9e-06 Score=70.32 Aligned_cols=89 Identities=10% Similarity=-0.105 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|.+.|++..+.... +...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455566666666666666666666666543 334555666666666666666666666666655322 44555555555
Q ss_pred HHccCCHHHHH
Q 020193 167 ICKSGEVEFCV 177 (329)
Q Consensus 167 ~~~~~~~~~a~ 177 (329)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.50 E-value=2.1e-06 Score=72.69 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=77.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGM 207 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (329)
+...+.+.|++++|.+.+++..+.... +...+..+..++.+.|++++|.+.+++..+..+ .+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 344566677777777777777776432 566777777777777777777777777776543 345667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccCChhHHHHHHH
Q 020193 208 IDEAFRLLHNLVEDGHKPFPSLYAPIIKG--MFRRGQFDDAFCFFS 251 (329)
Q Consensus 208 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 251 (329)
+++|...|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777665322 33344444444 666677777777766
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.49 E-value=1.3e-06 Score=61.94 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-CChh
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVED----GHKP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK----GHP-PNRP 263 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~ 263 (329)
++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +.+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444444445555555544443321 0000 0223334444444555555555544444322 000 0112
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
.+..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33444444445555555555544433
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.48 E-value=2.1e-06 Score=60.81 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
+..+...+...|++++|...+++..
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al 36 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRL 36 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.47 E-value=4.5e-06 Score=59.44 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhc--------C---------CCccHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAF--------N---------CQQCVLLYNSLLFALCEVKLFHGAYALIRRMI 79 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 79 (329)
...+......+.+.|++++|+..|+..... . -+.+...|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777778888889999998888887764 0 02233455556666666666666666666655
Q ss_pred HcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 80 RKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
+... .+...|..+..++...|++++|...|+.....
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5432 24455555666666666666666666655554
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=6.6e-07 Score=59.97 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=58.1
Q ss_pred ccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHH
Q 020193 29 KHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 29 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (329)
..|++++|+..|++..+.+ -|.+...+..+..++...|++++|...|++..+..+. +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777653 2445667777777777777777777777777766433 466677777777777777777
Q ss_pred HHHHHHHHhC
Q 020193 107 QEFLQEMSDK 116 (329)
Q Consensus 107 ~~~~~~~~~~ 116 (329)
...+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=3.1e-05 Score=66.90 Aligned_cols=173 Identities=10% Similarity=0.025 Sum_probs=138.6
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL----------FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.-++|++.++.+...+ |-+..+|+.--.++...++ ++++++.++.+.+...+ +..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 3467899999999887 7778888887777777777 89999999999987655 7788888888888888
Q ss_pred --chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc--------
Q 020193 102 --KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG-YLESAKQMVNKMIKQGFVLDLETFNSLIETICKS-------- 170 (329)
Q Consensus 102 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 170 (329)
+++++++.++++.+.. +.+..+|+....++.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6799999999998876 567888988888888888 899999999999888655 778888777666552
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 020193 171 ------GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209 (329)
Q Consensus 171 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (329)
+.++++.+.+++.....+ -+...|..+-..+.+.++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCS
T ss_pred cccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCcc
Confidence 457888888888887654 56777887777776666533
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=1.8e-05 Score=53.63 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=8.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 020193 163 LIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 163 l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
+..++...|++++|...|+.+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444443333
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=5.2e-06 Score=67.76 Aligned_cols=91 Identities=7% Similarity=-0.070 Sum_probs=69.3
Q ss_pred CcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 020193 121 PVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIP 200 (329)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 200 (329)
+...|..+..+|.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|++..+..+ .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 3566777888888888888888888888876433 677788888888888888888888888877643 35666777777
Q ss_pred HHHhcCCHHHHHH
Q 020193 201 AVSKAGMIDEAFR 213 (329)
Q Consensus 201 ~~~~~~~~~~a~~ 213 (329)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.35 E-value=2.3e-06 Score=69.09 Aligned_cols=149 Identities=11% Similarity=-0.000 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
..+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 445566666777777778877777776643 22221 222333333332221 13677788888
Q ss_pred HhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH-HHccCCHHHH
Q 020193 98 CSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET-ICKSGEVEFC 176 (329)
Q Consensus 98 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a 176 (329)
.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887764 446677888888888888888888888887765322 34455555444 2345567777
Q ss_pred HHHHHHHHHcC
Q 020193 177 VEMYYSVCKLG 187 (329)
Q Consensus 177 ~~~~~~~~~~~ 187 (329)
...|..+....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 78888776543
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.35 E-value=1.1e-05 Score=57.35 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHc--------CC---------ccChHHHHHHHHHHHhcCchhHHHHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRK--------GF---------VPDKRTYAILVNAWCSSGKMREAQEFLQEMS 114 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 114 (329)
...+......+.+.|++++|+..|.+.... .. +.+...|..+..++.+.|++++|+..++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 556777888888999999999999887764 00 1122345555556666666666666666665
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 115 DKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 543 334455555666666666666666666655554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.34 E-value=1.7e-06 Score=57.89 Aligned_cols=86 Identities=20% Similarity=0.152 Sum_probs=51.9
Q ss_pred cchHHHHHHHHHHHHHcC--CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHH
Q 020193 65 VKLFHGAYALIRRMIRKG--FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAK 142 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 142 (329)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666543 12234556666666777777777777777766654 334556666666667777777777
Q ss_pred HHHHHHHHc
Q 020193 143 QMVNKMIKQ 151 (329)
Q Consensus 143 ~~~~~~~~~ 151 (329)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 776666654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.31 E-value=8.2e-05 Score=64.25 Aligned_cols=169 Identities=7% Similarity=-0.013 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccC--
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY----------LESAKQMVNKMIKQGFVLDLETFNSLIETICKSG-- 171 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 171 (329)
++|++.++.+...+ +-+..+|+.--.++.+.|+ ++++++.++++.+.... +..+|+.-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 44555555555543 2233444444444444444 56666666666655433 5555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG-MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR---------- 240 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 240 (329)
+++++++.++++.+..+ -+...|+.-..++.+.| .++++.+.++++.+.++. +...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 44666666666665543 44555555555555555 566666666666555433 445555544444332
Q ss_pred ----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 020193 241 ----GQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR 277 (329)
Q Consensus 241 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 277 (329)
+.++++.+.++++.... +-|...|..+...+.+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34567777777766652 3355666666666655555
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.29 E-value=2.7e-06 Score=68.61 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 445666677777778888888888777654 233221 223333333332221 2378889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH-HHhcCCHHH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPA-VSKAGMIDE 210 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 210 (329)
|.+.|++++|+..+++..+.... +...+..+..+|...|++++|...|++..+..+ .+...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987533 778999999999999999999999999876543 234455555554 334567788
Q ss_pred HHHHHHHHHhCC
Q 020193 211 AFRLLHNLVEDG 222 (329)
Q Consensus 211 a~~~~~~~~~~~ 222 (329)
+..+|..+....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 888998887653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=2.4e-05 Score=54.61 Aligned_cols=61 Identities=13% Similarity=0.047 Sum_probs=34.1
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCc-------c-----HHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-------C-----VLLYNSLLFALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 80 (329)
.+......+.+.|++++|+..|++..+.. |. + ...|+.+..++.+.|++++|+..+++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555566667777777777777776554 11 1 12455555555555555555555555444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.25 E-value=1.5e-05 Score=55.67 Aligned_cols=97 Identities=18% Similarity=0.014 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----Ch-----hhHHHHHHHHHccCChhHHHHHHHHHHHc-----C
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHK-P-----FP-----SLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----G 257 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 257 (329)
.+......+.+.|++++|...|++..+.... | +. ..|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4445555666677777777777776654222 0 11 14455555555555555555555555442 0
Q ss_pred CCC-ChhhH----HHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 258 HPP-NRPVY----TMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 258 ~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
+.| +...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 022 22333 4444445555555555555554443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.22 E-value=6.2e-05 Score=51.85 Aligned_cols=109 Identities=10% Similarity=0.076 Sum_probs=49.0
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh----cCchhHHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS----SGKMREAQ 107 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 107 (329)
++++|.+.|++..+.+ .+... |...|...+.+++|.++|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4445555555555444 22222 3444444444444555555544443 33344444444444 44455555
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHc
Q 020193 108 EFLQEMSDKGFNPPVRGRDLLVQGLLN----AGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 151 (329)
.+|++..+.| ++..+..|...|.. .+++++|...|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555444433 23334444444444 44444444444444444
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=6.7e-06 Score=69.38 Aligned_cols=123 Identities=10% Similarity=-0.009 Sum_probs=70.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CCCChhhHHH
Q 020193 202 VSKAGMIDEAFRLLHNLVED---GHKP----FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----G--HPPNRPVYTM 267 (329)
Q Consensus 202 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ 267 (329)
+...|++++|+.++++..+. -..| ...+++.|...|...|++++|..++++.+.. | .+-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665532 1111 1345666777777777777777776665532 1 1112345666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh-----CCCC-CC-hhhHHHHHHHHHhCCchhHHHHHHHHHh
Q 020193 268 LITMCGRGGRFVEAANYLVEMTE-----MGLT-PI-SRCFDLVTDGLKNCGKHDLAEKIELLEV 324 (329)
Q Consensus 268 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 324 (329)
|...|...|++++|..++++..+ .|.. |+ ..+...+..++...|.+++|+.++..+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766542 2321 11 3344555566666677777776666553
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=1e-05 Score=68.30 Aligned_cols=125 Identities=12% Similarity=0.048 Sum_probs=95.1
Q ss_pred HHHccCCHHHHHHHHHHHHHc-----CC-CC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-ChhhHH
Q 020193 166 TICKSGEVEFCVEMYYSVCKL-----GL-CA-DVSTYKILIPAVSKAGMIDEAFRLLHNLVED-----GH-KP-FPSLYA 231 (329)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~ 231 (329)
.+...|++++|..++++..+. |. .| ...+++.|..+|...|++++|..++++..+. |. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887643 11 12 2467999999999999999999999987642 22 12 245688
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc-----CC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 020193 232 PIIKGMFRRGQFDDAFCFFSEMKIK-----GH--PPNRPVYTMLITMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 290 (329)
.|...|...|++++|+.++++.... |. +....+.+.+..++...+.+++|..++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643 32 22234556677778889999999999999875
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.17 E-value=0.00014 Score=50.07 Aligned_cols=111 Identities=16% Similarity=0.055 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChHHH
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN----AGYLESA 141 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 141 (329)
+++++|.++|++..+.| .|+. . +...|...+..++|.++|++..+.| ++..+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45666666666666655 2222 2 4455555555666666666665553 34455555555555 5566666
Q ss_pred HHHHHHHHHcCCccCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 020193 142 KQMVNKMIKQGFVLDLETFNSLIETICK----SGEVEFCVEMYYSVCKLG 187 (329)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 187 (329)
.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665553 34455555555555 555566666555555543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.3e-05 Score=52.60 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc-C----hHHH
Q 020193 16 SPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP-D----KRTY 90 (329)
Q Consensus 16 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~ 90 (329)
+...+..+...+...|++++|++.|++..+.. |.+...+..+..++...|++++|.+.+++..+..... + ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45667777777777788888888887777665 5667777777777777778888877777777653211 0 3334
Q ss_pred HHHHHHHHhcCchhHHH
Q 020193 91 AILVNAWCSSGKMREAQ 107 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~ 107 (329)
..+..++...|+.+.|.
T Consensus 82 ~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHhHhhhH
Confidence 44444444444444443
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.15 E-value=3.3e-05 Score=48.59 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHH
Q 020193 17 PQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNA 96 (329)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (329)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3455555666666666666666666665544 44555566666666666666666666666555432 133444444443
Q ss_pred H
Q 020193 97 W 97 (329)
Q Consensus 97 ~ 97 (329)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.10 E-value=2.8e-05 Score=54.18 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=68.9
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHcCCccChHHHHHHHHHH
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLF----------HGAYALIRRMIRKGFVPDKRTYAILVNAW 97 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (329)
.+.+.+++|.+.++...+.+ |.+...|+.+..++...+++ ++|+..|++.++.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567889999999998887 78889999888888888765 4788888887776433 556777777777
Q ss_pred HhcC-----------chhHHHHHHHHHHhCCCCCCcccH
Q 020193 98 CSSG-----------KMREAQEFLQEMSDKGFNPPVRGR 125 (329)
Q Consensus 98 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 125 (329)
...| ++++|.+.|++..+.. |+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHH
Confidence 7664 6777777777776643 554444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=4.4e-05 Score=50.65 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=40.1
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 36 AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
|+..|+...+.+ |.+...+..+...+...|++++|...|++..+... .+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555554443 44455555555555555555555555555554432 1344455555555555555555555555443
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.04 E-value=3.6e-05 Score=49.70 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 14 SVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
|-++..+..+...+.+.|++++|+..|++..+.+ |.+...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466777788888888888888888888887776 666778888888888888888888888776653
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.02 E-value=9.6e-05 Score=46.35 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 020193 52 VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQG 131 (329)
Q Consensus 52 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (329)
...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 44555566666666666666666666655432 244455555666666666666666666655543 2233334444333
Q ss_pred H
Q 020193 132 L 132 (329)
Q Consensus 132 ~ 132 (329)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.01 E-value=6.1e-05 Score=49.93 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=66.2
Q ss_pred HHHhhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 3 KTIELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+.++...+.. +.++..+..+...+...|++++|...|+...+.+ |.+...|..+..++...|++++|...|++..+.
T Consensus 6 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 6 ERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555444 5578899999999999999999999999999877 677889999999999999999999999998765
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.00 E-value=4.2e-05 Score=50.14 Aligned_cols=90 Identities=12% Similarity=-0.020 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-------cc
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP-------VR 123 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 123 (329)
+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 456677777777888888888888887776642 256677777777888888888888888777653 33 23
Q ss_pred cHHHHHHHHHhcCChHHHHH
Q 020193 124 GRDLLVQGLLNAGYLESAKQ 143 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~ 143 (329)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 34444444444444444433
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.91 E-value=8.5e-05 Score=51.77 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=65.8
Q ss_pred HhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch----------hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 63 CEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM----------REAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
.+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556788888888888877533 777888888888877765 47777777777764 34556777777777
Q ss_pred HhcC-----------ChHHHHHHHHHHHHcCCccCHHhHH
Q 020193 133 LNAG-----------YLESAKQMVNKMIKQGFVLDLETFN 161 (329)
Q Consensus 133 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~ 161 (329)
...| ++++|.+.|++..+. .|+...|.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 7664 677777777776665 34444443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.83 E-value=0.001 Score=53.29 Aligned_cols=143 Identities=12% Similarity=0.010 Sum_probs=85.6
Q ss_pred CccHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh---cC--c---hhHHHHHHHHHHh
Q 020193 49 QQCVLLYNSLLFALCE-----VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS---SG--K---MREAQEFLQEMSD 115 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~~~ 115 (329)
|.+...|...+++... ..+..+|..+|++..+..+. ....|..+.-++.. .+ . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 5566666666655432 23356777777777765321 23344433333321 01 0 1111112222111
Q ss_pred -CCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhh
Q 020193 116 -KGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST 194 (329)
Q Consensus 116 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 194 (329)
...+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....+ |...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 1124566777777777777789999999999888885 677777777788888899999999998887754 45455
Q ss_pred HH
Q 020193 195 YK 196 (329)
Q Consensus 195 ~~ 196 (329)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00015 Score=46.73 Aligned_cols=66 Identities=12% Similarity=0.000 Sum_probs=45.7
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
|.+...+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|...+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445667777777777777777777777777766432 455677777777777777777777776654
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.58 E-value=0.00024 Score=58.95 Aligned_cols=89 Identities=7% Similarity=-0.056 Sum_probs=59.3
Q ss_pred ccCChhHHHHHHHHHHHc---CCCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHHHH
Q 020193 239 RRGQFDDAFCFFSEMKIK---GHPP----NRPVYTMLITMCGRGGRFVEAANYLVEMTE-----MGL-TPI-SRCFDLVT 304 (329)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~ 304 (329)
..|++++|+.++++.++. -+.| ...+++.+..+|...|++++|..++++..+ .|. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777887777776543 1111 235677778888888888888888777653 221 122 45677788
Q ss_pred HHHHhCCchhHHHHHHHHHhhhc
Q 020193 305 DGLKNCGKHDLAEKIELLEVSLR 327 (329)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~~~~~~ 327 (329)
..|...|++++|+.+++.+..+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH
Confidence 88888888888888877776653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.54 E-value=0.0051 Score=49.33 Aligned_cols=144 Identities=11% Similarity=-0.003 Sum_probs=90.4
Q ss_pred ccChHHHHHHHHHHHh--cC---chhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh---cC-Ch-HHHH---HHHHHHHH
Q 020193 84 VPDKRTYAILVNAWCS--SG---KMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLN---AG-YL-ESAK---QMVNKMIK 150 (329)
Q Consensus 84 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~-~~a~---~~~~~~~~ 150 (329)
+.+...|...+++... .+ +..+|..+|++..+.. |-....+..+.-+|.. .+ .. .... ..+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4466677777765432 22 3578888899888764 2233444444433321 11 11 1111 11221111
Q ss_pred -cCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 020193 151 -QGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL 229 (329)
Q Consensus 151 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 229 (329)
...+.+..++..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1124467777777777777799999999999988875 67777777788888899999999999888775 455666
Q ss_pred HHH
Q 020193 230 YAP 232 (329)
Q Consensus 230 ~~~ 232 (329)
|..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.46 E-value=0.00052 Score=57.03 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHccCChhHHHHHHHHHHHcC---CCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHh-----CCC-CCC-hhhHHH
Q 020193 237 MFRRGQFDDAFCFFSEMKIKG---HPP----NRPVYTMLITMCGRGGRFVEAANYLVEMTE-----MGL-TPI-SRCFDL 302 (329)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~ 302 (329)
+...|++++|+.++++..+.. +.| ...+++.+..+|...|++++|..++++..+ .|. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444555555555555554320 111 123455555555555666666655555442 111 111 334555
Q ss_pred HHHHHHhCCchhHHHHHHHHHhhh
Q 020193 303 VTDGLKNCGKHDLAEKIELLEVSL 326 (329)
Q Consensus 303 l~~~~~~~g~~~~a~~~~~~~~~~ 326 (329)
|...|...|++++|+.+++.+..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555666666666666555555443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.0016 Score=41.04 Aligned_cols=67 Identities=7% Similarity=-0.039 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHccCc---hhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 14 SVSPQTLSLIIEEFGKHGL---VDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
+.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+.+.|++++|+..|+.+.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455555555555543333 456666666666555 555556666666666666666666666666554
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.35 E-value=0.0027 Score=40.29 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=50.1
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHH-HHHHHHHHHHhcchHHHHHHHHHHHHHcC
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-LYNSLLFALCEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 82 (329)
....+.+.|++++|...|+...+.. |.+.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566778899999999999998876 66777 88889999999999999999999988764
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.35 E-value=0.001 Score=55.23 Aligned_cols=62 Identities=8% Similarity=-0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHhC-----C--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 88 RTYAILVNAWCSSGKMREAQEFLQEMSDK-----G--FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
.+++.+..+|...|++++|+.++++..+. | .+....+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34455555555555555555555544321 1 01112334555555555555555555555443
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0013 Score=54.69 Aligned_cols=92 Identities=9% Similarity=0.065 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC---CCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCC-Chh
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVEDG---HKPF----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIK-----G-HPP-NRP 263 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~ 263 (329)
.+..+.+.|++++|+.++++..+.. ..|+ ..+++.+...|...|++++|+.++++.+.. | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999999987541 1222 346888999999999999999999887643 2 122 235
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHH
Q 020193 264 VYTMLITMCGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 264 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 289 (329)
+++.|...|...|++++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 68889999999999999999998876
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.22 E-value=0.023 Score=43.77 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=29.0
Q ss_pred hHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 020193 159 TFNSLIETICK-----SGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKA-GMIDEAFRLLHNLVEDG 222 (329)
Q Consensus 159 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 222 (329)
.|..+...|.+ -|+.++|.+.|++..+.++.-+..++......++.. |+.+.+.+.+++.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 44444444444 245555555555554433222233444444444442 44555555555544443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.00087 Score=42.71 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHH-hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLE-TFNSLIETICKSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 185 (329)
.+.+.|++++|...+++..+.... +.. .+..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444443211 233 444444444444444444444444444
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.17 E-value=0.023 Score=51.47 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHcc
Q 020193 91 AILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKS 170 (329)
Q Consensus 91 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (329)
..++..+.+.|.++.|.++.+.- ..-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 55555556666666665544211 11123345566666666664332 2556666666666667
Q ss_pred CCHHHHHHHHHHH
Q 020193 171 GEVEFCVEMYYSV 183 (329)
Q Consensus 171 ~~~~~a~~~~~~~ 183 (329)
++++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 7776666666654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.13 E-value=0.0099 Score=40.97 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=60.0
Q ss_pred chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHcCCcc--ChHHHHHHHHHHHhcCchhHH
Q 020193 32 LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK---LFHGAYALIRRMIRKGFVP--DKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 32 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 106 (329)
....+.+-|......+ +++..+...+..++++.+ ++++++.+|++..+.+ .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3445566666666656 577777777888888877 6778888888888764 23 344555666777888888888
Q ss_pred HHHHHHHHhCC
Q 020193 107 QEFLQEMSDKG 117 (329)
Q Consensus 107 ~~~~~~~~~~~ 117 (329)
.+.++.+.+..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 88888887753
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.12 E-value=0.013 Score=36.86 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=43.3
Q ss_pred CccHHHHHHHHHHHHhcch---HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Q 020193 49 QQCVLLYNSLLFALCEVKL---FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 117 (329)
+.|+..+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4556666666666654433 56777777777765432 55566666667777777777777777776654
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.05 E-value=0.012 Score=37.94 Aligned_cols=67 Identities=7% Similarity=-0.026 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC------CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN------CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
.++.....+...+.+.|+++.|...|+...+.. -.+...++..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 456666777788888888888888887776431 1345667777777888888888888888777765
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.022 Score=51.60 Aligned_cols=155 Identities=13% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHHHhcCchhHHHH-HHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCH
Q 020193 95 NAWCSSGKMREAQE-FLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEV 173 (329)
Q Consensus 95 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (329)
......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34445667777655 43111 101223666777777777777776553111 112334567788
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 020193 174 EFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
+.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8887775432 4567788888888888888888888877532 334455555577777666665555
Q ss_pred HHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 254 KIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
...| -++....+|.+.|++++|.+++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5442 2344455566677777777777554
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.00 E-value=0.0074 Score=41.61 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHhccCCHHHH
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG---QFDDAFCFFSEMKIKGHPP--NRPVYTMLITMCGRGGRFVEA 281 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 281 (329)
....+.+-|.+..+.+. ++..+...+..++++.+ +.++++.+++...+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777766655 57787777888899988 5669999999988874 23 355666777788999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 020193 282 ANYLVEMTEMGLTPI 296 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~ 296 (329)
.++++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999874 454
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.045 Score=38.76 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=20.1
Q ss_pred HccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHH
Q 020193 28 GKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR 77 (329)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 77 (329)
.+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444555554444333 1234444444444444554444444443
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.87 E-value=0.022 Score=43.85 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhhcCCCc--cHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhc-CchhH
Q 020193 34 DNAVEVFNKCTAFNCQQ--CVLLYNSLLFALCEV-----KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSS-GKMRE 105 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 105 (329)
..|...+++..+.+ |. +...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleLD-P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDLW-PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555554 22 244566666666663 66666666666666553322355555556655553 66666
Q ss_pred HHHHHHHHHhCC
Q 020193 106 AQEFLQEMSDKG 117 (329)
Q Consensus 106 a~~~~~~~~~~~ 117 (329)
+.+.+++.....
T Consensus 259 a~~~L~kAL~a~ 270 (301)
T 3u64_A 259 FDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCC
Confidence 666666666554
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.79 E-value=0.0092 Score=38.45 Aligned_cols=67 Identities=9% Similarity=-0.007 Sum_probs=55.4
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHHcC------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 020193 226 FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKG------HPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMG 292 (329)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 292 (329)
+...+..+...+.+.|+++.|...++...+.. -.+....+..+..++.+.|+++.|...+++..+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566778899999999999999999987641 12456788999999999999999999999998753
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.78 E-value=0.057 Score=36.11 Aligned_cols=134 Identities=13% Similarity=0.099 Sum_probs=67.5
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhcCChHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR---GRDLLVQGLLNAGYLESA 141 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a 141 (329)
.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+. -|.. -...++.+|.+.|.
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~---- 89 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT---- 89 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC----
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcc----
Confidence 455566666666555432 4444555555555555555555555444321 1111 11223333333322
Q ss_pred HHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 142 KQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
+.......+......|..++..+++..+... .+|++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 90 --------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred --------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3334444555555666666666666664332 2355556666666666666666666666666665
Q ss_pred CC
Q 020193 222 GH 223 (329)
Q Consensus 222 ~~ 223 (329)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.48 E-value=0.035 Score=37.86 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 020193 171 GEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG 222 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 222 (329)
++.++|.++|+.+.+.+-.. ...|......-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 34444444444443321111 3333333333444444444444444444443
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.34 E-value=0.12 Score=34.57 Aligned_cols=149 Identities=12% Similarity=0.153 Sum_probs=84.6
Q ss_pred HHHHHHHHH--HHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 18 QTLSLIIEE--FGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 18 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
++...|+.+ +.-.|..++..++..+..+. .+..-||.+|.-....-+-+-..++++..-+ -.|..
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis------- 72 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD------- 72 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG-------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH-------
Confidence 344555544 44568999999999988774 3677788888777776666666666555432 22221
Q ss_pred HHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHH
Q 020193 96 AWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEF 175 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (329)
..|+.......+-.+ + .+.......+..+...|.-++-.+++..+.. +.+|++.....+..+|.+.|+..+
T Consensus 73 ---~C~NlKrVi~C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~ 143 (172)
T 1wy6_A 73 ---KCQNLKSVVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERD 143 (172)
T ss_dssp ---GCSCTHHHHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHH
T ss_pred ---hhhcHHHHHHHHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhh
Confidence 222222222222211 1 2233444555566666666666666666433 224456666666666666666666
Q ss_pred HHHHHHHHHHcCC
Q 020193 176 CVEMYYSVCKLGL 188 (329)
Q Consensus 176 a~~~~~~~~~~~~ 188 (329)
+.+++.+.-+.|+
T Consensus 144 a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 144 ATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhh
Confidence 6666666666655
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.33 E-value=0.09 Score=35.91 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=25.1
Q ss_pred CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 020193 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFV 154 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 154 (329)
++.++|.++|+.+.+.+ +-=...|....+.-.+.|+...|.+++.+....+..
T Consensus 74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432 111333333444444555555555555555555433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.21 E-value=0.034 Score=36.85 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=61.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH---HHHHHHHHHHcCCC-CChhhHHHHHHHHhc
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD---AFCFFSEMKIKGHP-PNRPVYTMLITMCGR 274 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 274 (329)
+..-........+.+-|......|. ++..+-..+..++.+..+... ++.+++.+...+.+ -.....-.+.-++.+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444455666666766655444 566766667788888877665 77888887765311 133445556677888
Q ss_pred cCCHHHHHHHHHHHHhC
Q 020193 275 GGRFVEAANYLVEMTEM 291 (329)
Q Consensus 275 ~~~~~~a~~~~~~~~~~ 291 (329)
.|++++|.++++.+.+.
T Consensus 87 lg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQT 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 99999999998888864
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.17 E-value=0.065 Score=35.51 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHH---HHHHHHHHHHcCCc-cChHHHHHHHHHHHhcCchhHHHHH
Q 020193 34 DNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHG---AYALIRRMIRKGFV-PDKRTYAILVNAWCSSGKMREAQEF 109 (329)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 109 (329)
..+.+-|......| .++..+-..+..++++.++... ++.+++++.+.+.+ -.....-.+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444443333 3455555555555555444333 55555555544211 1222233344455555555555555
Q ss_pred HHHHHhC
Q 020193 110 LQEMSDK 116 (329)
Q Consensus 110 ~~~~~~~ 116 (329)
++.+.+.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.27 Score=34.82 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=80.3
Q ss_pred HHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 60 FALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|....+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455678888888877654 2566788888888888888888888876543 445566666777776
Q ss_pred HHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 020193 140 SAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNL 218 (329)
Q Consensus 140 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 218 (329)
...++-+.....| -++.....+...|+++++.++|.+..+ .|.. .......|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 6666655555443 234445556667888888777754322 1211 11222355666666666654
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.15 Score=45.33 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHHHHHHHccCc-hhHHHHHHHHhhhcCCCccHHHH-HHHHHHHHhcc-hHHHHHHHHHHHHHc------CCcc-Ch--
Q 020193 20 LSLIIEEFGKHGL-VDNAVEVFNKCTAFNCQQCVLLY-NSLLFALCEVK-LFHGAYALIRRMIRK------GFVP-DK-- 87 (329)
Q Consensus 20 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~-- 87 (329)
...++..+...++ .+.|..+|+++...+ |.....+ ..++..+...+ +--+|.+++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~-p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD-PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 4556666666666 588999999998876 3222222 33343333332 223455555544321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 88 --------RTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 88 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
.....-...|...|+++-|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 112222345667899999999999998764 5567899999999999999999999998774
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.77 E-value=8.7e-06 Score=66.66 Aligned_cols=245 Identities=13% Similarity=0.082 Sum_probs=154.0
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
.+..|..|..+..+.+...+|++-|-+ . -|+..|..++.+..+.|.+++...++....+.. .++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 355677788888877777777655422 1 255567788888888888888888777665542 34455567888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc--------------------CCCC
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL--------------------GLCA 190 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~ 190 (329)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+... .-..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888877655433321 244444455555555556555555555443211 1124
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 020193 191 DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLIT 270 (329)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 270 (329)
++.||..+-.+|...+.+.-|...--.++-. ..-...++..|...|.+++.+.+++..... -+....+|+-|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 6789999999999999887776554444422 122234667789999999999999887743 2457788888888
Q ss_pred HHhccCCHHHHHHHHHHHHh-CCCCC------ChhhHHHHHHHHHhCCchhHHH
Q 020193 271 MCGRGGRFVEAANYLVEMTE-MGLTP------ISRCFDLVTDGLKNCGKHDLAE 317 (329)
Q Consensus 271 ~~~~~~~~~~a~~~~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~a~ 317 (329)
.|++- ++++..+.++..-. .+++- ....|..++-.|.+-.++|.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88765 45555555443322 12211 2345666666666666666554
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.56 E-value=0.32 Score=39.77 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh-----CCCCCCcccHHH
Q 020193 53 LLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD-----KGFNPPVRGRDL 127 (329)
Q Consensus 53 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 127 (329)
.+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 345556677777788888877777776653 33666777788888888888888777776633 367776655443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.2 Score=44.53 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=34.8
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
..+...|+++-|+.+-++.... .+-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455667777777777776655 2334567777777777777777777666654
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.95 E-value=1.4 Score=36.80 Aligned_cols=255 Identities=9% Similarity=0.043 Sum_probs=147.3
Q ss_pred cCchhHHHHHHHHhhh-----cCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc-CCccChHHHHHHHHHH----Hh
Q 020193 30 HGLVDNAVEVFNKCTA-----FNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK-GFVPDKRTYAILVNAW----CS 99 (329)
Q Consensus 30 ~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~----~~ 99 (329)
.|+++.|++.+-.+.+ .+.+........++..|...++++...+.+..+... |..+.. ...+++.+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3778888887766653 234556778888999999999999998888766643 332222 23333322 22
Q ss_pred cCchhHH--HHHHHHHHhCCCCCC--------cccHHHHHHHHHhcCChHHHHHHHHHHHHc--CCccC---HHhHHHHH
Q 020193 100 SGKMREA--QEFLQEMSDKGFNPP--------VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--GFVLD---LETFNSLI 164 (329)
Q Consensus 100 ~~~~~~a--~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~ 164 (329)
....+.. ..+.+.+. .+... ......|...+...|++.+|.+++..+... |.... ...+..-+
T Consensus 107 ~~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3332221 12221111 11111 112356788899999999999999988653 22211 24566778
Q ss_pred HHHHccCCHHHHHHHHHHHHH----cCCCCc--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHH----HH
Q 020193 165 ETICKSGEVEFCVEMYYSVCK----LGLCAD--VSTYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFPSLYA----PI 233 (329)
Q Consensus 165 ~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l 233 (329)
+.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+. .+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 889999999999999988742 222222 245677778888899999998888877543 1111222221 11
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc--CCHHHHHHHHHHH
Q 020193 234 IKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG--GRFVEAANYLVEM 288 (329)
Q Consensus 234 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 288 (329)
+.+..-.+..+.-..+.........-++...|..++.+|... .+++.+.+.|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH
Confidence 111111222122222333332222234667788888888643 4566666655443
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.81 E-value=2 Score=40.81 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=121.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC--------------
Q 020193 127 LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKL----GL-------------- 188 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-------------- 188 (329)
.++..+.+.+.++.+.++.... +.++...-.+..++...|++++|.+.|.+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566667776666544332 224444456677888999999999999774210 00
Q ss_pred ----CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 189 ----CADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPF----PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 189 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
..-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00123467788888899999999888877665422112 125788899999999999999988887765333
Q ss_pred ChhhHHHHHHHHhccCCHHH------------HHHHHHHHHh-C-CCCCChhhHHHHHHHHHhCCchhHHHHH-HHHHhh
Q 020193 261 NRPVYTMLITMCGRGGRFVE------------AANYLVEMTE-M-GLTPISRCFDLVTDGLKNCGKHDLAEKI-ELLEVS 325 (329)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~------------a~~~~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 325 (329)
...+..|+..++..|..+. ..+++....+ . .+...+..|..|.......|++..|-.+ |+...+
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 4567777776666555444 3333332211 1 1122234567677667777888877655 666555
Q ss_pred h
Q 020193 326 L 326 (329)
Q Consensus 326 ~ 326 (329)
+
T Consensus 1050 L 1050 (1139)
T 4fhn_B 1050 Y 1050 (1139)
T ss_dssp H
T ss_pred h
Confidence 4
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=1.6 Score=36.34 Aligned_cols=190 Identities=12% Similarity=0.131 Sum_probs=119.6
Q ss_pred cchHHHHHHHHHHHHHc-----CCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHH----Hhc
Q 020193 65 VKLFHGAYALIRRMIRK-----GFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGL----LNA 135 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 135 (329)
.+++++|++.+..+.+. +..........++..|...++|+...+.+..+....... ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888887666643 234456678889999999999999988877765432111 22233333332 223
Q ss_pred CChHHHH--HHHHHHHH--cC-Ccc---CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCc---hhhHHHHHHHH
Q 020193 136 GYLESAK--QMVNKMIK--QG-FVL---DLETFNSLIETICKSGEVEFCVEMYYSVCKL--GLCAD---VSTYKILIPAV 202 (329)
Q Consensus 136 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 202 (329)
...+... .+.+.+.. .| +.. .......|...+...|++.+|..++..+... +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3332211 11111111 01 111 1223456788899999999999999998643 22121 34677788899
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHccCChhHHHHHHHHHHH
Q 020193 203 SKAGMIDEAFRLLHNLVE----DGHKPF--PSLYAPIIKGMFRRGQFDDAFCFFSEMKI 255 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 255 (329)
...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998753 222222 23466677778888999999888877754
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.62 E-value=2.7 Score=39.93 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH----HhHHHHHHHHHccCCHHHHHHHHHHHH
Q 020193 125 RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL----ETFNSLIETICKSGEVEFCVEMYYSVC 184 (329)
Q Consensus 125 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 184 (329)
|..++..+.+.|.++.+.++-....+....-+. ..|..+.+.+...|++++|...+-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 344555555555555555555444433111111 134455555555555555555554443
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.60 E-value=0.47 Score=29.80 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc
Q 020193 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK 256 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 256 (329)
+..+-+..+......|++......+++|.+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555555555555555554433
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.43 E-value=0.37 Score=39.43 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=36.3
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH-----hCCCCCChhhHH
Q 020193 233 IIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMT-----EMGLTPISRCFD 301 (329)
Q Consensus 233 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~ 301 (329)
++..+...|+++++...+..+... .+.+...+..++.++.+.|+..+|++.|+... +.|+.|...+-.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 444455556666665555555443 23345555666666666666666665555543 245555544433
No 245
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.39 E-value=3 Score=38.22 Aligned_cols=256 Identities=14% Similarity=0.006 Sum_probs=129.8
Q ss_pred HHccCchhHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC-------ccChHHHHHHHHHH
Q 020193 27 FGKHGLVDNAVEVFNKCTAFN--CQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-------VPDKRTYAILVNAW 97 (329)
Q Consensus 27 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 97 (329)
....|+.++++.+++.....+ -.+....-..+.-+.+..|..+++..++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 334566666666666554311 022233333444445555555567777666554321 01111222333333
Q ss_pred HhcCc-hhHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH--HHccCC
Q 020193 98 CSSGK-MREAQEFLQEMSDKGFNPPVRGRD--LLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET--ICKSGE 172 (329)
Q Consensus 98 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ 172 (329)
+-.|. -+++...+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+..+ +...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2345555555544321 1111112 23333456677777777777766542 33333334333 446788
Q ss_pred HHHHHHHHHHHHHcCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 173 VEFCVEMYYSVCKLGLCADVSTY--KILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
.+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888776531 1222222 233456777888888888888887642 223333344444555667777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHhccCCH-HHHHHHHHHHH
Q 020193 251 SEMKIKGHPPNRPVYTMLITMCGRGGRF-VEAANYLVEMT 289 (329)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 289 (329)
..+...+ .|....-..+.-+....|.. .++...+..+.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6665542 34443333333333334433 46677777775
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.21 E-value=4.2e-05 Score=62.79 Aligned_cols=203 Identities=14% Similarity=0.059 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 87 KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 87 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
+..|..|..+..+.+...+|++.| ++ .-|+..|..++.+..+.|.+++-...+...++..- ++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 345777888877777777766544 12 23667788888888888888888888776665522 44555678888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCC
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDG--------------------HKPF 226 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~ 226 (329)
|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..+..-. -..+
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888866544433 12666667777788888888887777775542110 0123
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 227 PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
+.||-.+-.+|...+.+.-|...--.+.- ...-...++..|...|.+++.+.+++.-.... .....+|+.|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 44555555555555555554444333332 11223344555555566666555555544211 2345566666666
Q ss_pred HHhC
Q 020193 307 LKNC 310 (329)
Q Consensus 307 ~~~~ 310 (329)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6554
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.05 E-value=0.64 Score=29.20 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=54.3
Q ss_pred HHccC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 237 MFRRG-QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 237 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
+.+.. +.-+..+-++.+....+.|++......+++|.+.+++..|.++++-.+.+- .+...+|..+++-
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33444 556788888888888999999999999999999999999999998887432 3345567777654
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.72 E-value=0.97 Score=30.14 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 020193 210 EAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLI 269 (329)
Q Consensus 210 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 269 (329)
+..+-++.+...+..|++......+++|.+.+++..|.++|+-++.+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44444455555555666666666666666666666666666665544 222333454444
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.29 E-value=1.2 Score=29.78 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDG 306 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 306 (329)
|.-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-.+.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 45567777888888889999999999999999999999999999888753 23445567777654
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.42 E-value=0.77 Score=34.93 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=76.5
Q ss_pred HHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc--cChHHHHHHHHHHHhcCc
Q 020193 25 EEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV--PDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 102 (329)
..+.+.|++++|++....-++.. |.|...-..++..+|-.|++++|.+-++...+.... |...+|..+|++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 45678899999999998888877 888999999999999999999999999888776321 222234444433
Q ss_pred hhHHHHHHHHHHhCCCCC-----CcccHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 020193 103 MREAQEFLQEMSDKGFNP-----PVRGRDLLVQGLL--NAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 151 (329)
+..=.++...+-.| .......++.+.. ..|+.++|..+-.++.+.
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333322111 2223344555544 358888888888877654
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.31 E-value=1.4 Score=29.39 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=52.0
Q ss_pred CCCCChhhHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh
Q 020193 222 GHKPFPSLYAPIIKGMFRRGQF---DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPIS 297 (329)
Q Consensus 222 ~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 297 (329)
+..|+..+--.+..++.+..+. .+++.+++++...+..-....+-.+.-++.+.|++++|.++.+.+.+. .|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 4456666666677777777654 467888888877642223455666777888999999999999988864 4553
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.07 E-value=1.9 Score=29.17 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=51.3
Q ss_pred CCCChhhHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 020193 223 HKPFPSLYAPIIKGMFRRGQF---DDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296 (329)
Q Consensus 223 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 296 (329)
..|+..+--.+..++.++.+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+. .|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 356777766677777777754 467788888877533223445556677888999999999999998875 454
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.79 E-value=1.4 Score=30.74 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~ 113 (329)
+..+.+++...+++..|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444444555555555555443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.30 E-value=2.5 Score=29.49 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCh-------hhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVED-GHKPFP-------SLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
++-.-+..+...+.++.|+-+.+.+... +..|+. .++..+.+++...+++.+|...|++.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444556666777787777777765532 112221 145556677777788888888777754
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.24 E-value=2.3 Score=28.40 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=44.0
Q ss_pred CccHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 49 QQCVLLYNSLLFALCEVK---LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
.|+..+--.+..++++.+ +..+++.+++++.+.+..-....+-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 556666556666666654 34467777777776653223445555666777888888888888777765
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.90 E-value=4.4 Score=33.57 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=66.3
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHcCC--ccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCchhh--H
Q 020193 123 RGRDLLVQGLLNAGYLESAKQMVNKMIKQGF--VLDLETFNSLIETICKSGEVEFCVEMYYSVCKL---GLCADVST--Y 195 (329)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 195 (329)
.+...+...|.+.|+++.|.+.+.++...-. ..-...+-..++.+...+++..+...+.+.... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 4677888999999999999999998877522 223456777788888889999998888887532 22222211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 020193 196 KILIPAVSKAGMIDEAFRLLHNLVED 221 (329)
Q Consensus 196 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 221 (329)
..-...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234568888888888776543
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.72 E-value=3.8 Score=33.94 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChHHHHHHHHHHH
Q 020193 90 YAILVNAWCSSGKMREAQEFLQEMSDKGF--NPPVRGRDLLVQGLLNAGYLESAKQMVNKMI 149 (329)
Q Consensus 90 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 149 (329)
...+...+.+.|+++.|.+.+.++..... ..-...+-.+++.+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34455555555555555555555543311 1112334444555555555555555555443
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.61 E-value=13 Score=34.34 Aligned_cols=281 Identities=12% Similarity=0.063 Sum_probs=147.2
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCC-------CccHHHHHHHHHHHHhcch-HHHHHHHHHHHHHcCCccChHHHH--
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNC-------QQCVLLYNSLLFALCEVKL-FHGAYALIRRMIRKGFVPDKRTYA-- 91 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~-- 91 (329)
.+.-.....|..+++..++.......- .+....-..+.-+++-.|. -+++.+.+..+....- +......
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 333444556665667777766554321 0112222223223322232 2355666666554321 1111122
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHH--HHHHHhcCChHHHHHHHHHHHHcCCccCHHh--HHHHHHHH
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLL--VQGLLNAGYLESAKQMVNKMIKQGFVLDLET--FNSLIETI 167 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 167 (329)
.+...+.-.|+-+....++..+.+.. +......+ .-++...|+.+.+..+++.+.... .|.... -.++.-+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 23334556677777777777766532 22333333 334457799999999988887641 222221 12344567
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-hHH
Q 020193 168 CKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF-DDA 246 (329)
Q Consensus 168 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a 246 (329)
+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+..+....|.. .++
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 78899888888988887642 2333333333344445677766777776665543 44544444455555555554 578
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHh--ccC-------CHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhCCc
Q 020193 247 FCFFSEMKIKGHPPNRPVYTMLITMCG--RGG-------RFVEAANYLVEMTE-MGLTPISRCFDLVTDGLKNCGK 312 (329)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~-------~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 312 (329)
..++..+... +|..+-..-+.++. -.| +....++.+..... +.-.++...-..+..+....|.
T Consensus 649 id~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 649 IDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 8888888743 44444333333332 222 33334443333332 2334556666667777766664
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.83 E-value=8.5 Score=31.39 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHccCchhHHHHHHHHhhhc-CCC---ccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHcCCccChHHH--
Q 020193 18 QTLSLIIEEFGKHGLVDNAVEVFNKCTAF-NCQ---QCVLLYNSLLFALCEV-KLFHGAYALIRRMIRKGFVPDKRTY-- 90 (329)
Q Consensus 18 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-- 90 (329)
.....|...|.+.|+.++..+++...... +.. ........++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34566788888888888888888776532 111 2344566777777663 3334444444444432111 22233
Q ss_pred ----HHHHHHHHhcCchhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHhcCChHHHHHHHHHHHHc--CCccCHHh
Q 020193 91 ----AILVNAWCSSGKMREAQEFLQEMSDKGFNPP-----VRGRDLLVQGLLNAGYLESAKQMVNKMIKQ--GFVLDLET 159 (329)
Q Consensus 91 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 159 (329)
..++..|...|++.+|.+++..+.+.--..| ...+..-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2567788888888888888877765321112 123444566777888888888888766543 22233333
Q ss_pred HHHH----HHHHH-ccCCHHHHHHHHHHHH
Q 020193 160 FNSL----IETIC-KSGEVEFCVEMYYSVC 184 (329)
Q Consensus 160 ~~~l----~~~~~-~~~~~~~a~~~~~~~~ 184 (329)
-..+ ...+. ..+++..|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 22344 6778888877776654
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.75 E-value=3.1 Score=31.72 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=10.9
Q ss_pred HHHHHHccCchhHHHHHHHH
Q 020193 23 IIEEFGKHGLVDNAVEVFNK 42 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~ 42 (329)
.+...++.|+.+....+++.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34445566776655555443
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.33 E-value=7.9 Score=30.38 Aligned_cols=86 Identities=12% Similarity=0.021 Sum_probs=44.4
Q ss_pred HHHhcchHHHHHHH----HHHHHHcCCccChHHHHHHHHHHHhcCchh-HHHHHHHHHH----hCC--CCCCcccHHHHH
Q 020193 61 ALCEVKLFHGAYAL----IRRMIRKGFVPDKRTYAILVNAWCSSGKMR-EAQEFLQEMS----DKG--FNPPVRGRDLLV 129 (329)
Q Consensus 61 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~ 129 (329)
.+.+.|+...|-++ ++-+.+.+++++......++..+.....-+ .-.++++.+. +.| ..-++.....+.
T Consensus 62 ~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a 141 (312)
T 2wpv_A 62 SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIG 141 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34445555554443 444445567777777777776665533211 1123333332 222 112445566666
Q ss_pred HHHHhcCChHHHHHHHH
Q 020193 130 QGLLNAGYLESAKQMVN 146 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~ 146 (329)
..|.+.|++.+|...|-
T Consensus 142 ~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 142 SKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHhhcCCHHHHHHHHH
Confidence 77777777766665553
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=88.22 E-value=2 Score=32.69 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=28.8
Q ss_pred HHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 97 WCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..+.|+++++++....-++.. |.|...-..+++.+|-.|++++|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555554443 344455555555555555555555555555544
No 263
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.09 E-value=4.6 Score=27.36 Aligned_cols=66 Identities=6% Similarity=0.059 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHHHHhcch---HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 50 QCVLLYNSLLFALCEVKL---FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 50 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
|+..+-..+..++++..+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444444444332 234455555544432211222233334445555555555555555544
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.37 E-value=6.9 Score=29.67 Aligned_cols=240 Identities=11% Similarity=-0.004 Sum_probs=117.9
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChH---HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCccc--HHHHHHH
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKR---TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRG--RDLLVQG 131 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 131 (329)
..+...++.|+.+.+..+ .+.|..++.. .-...+...+..|+.+- ++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 445566777877655444 4555444322 11234555566677544 444455554443221 1233444
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCH---HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhh------------HH
Q 020193 132 LLNAGYLESAKQMVNKMIKQGFVLDL---ETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVST------------YK 196 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~ 196 (329)
.+..|+.+ +++.+.+.|..++. .-++ .+...+..|+.+- ++.+.+.|..++... -.
T Consensus 79 A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 55566654 44445555554432 2222 3344456676654 444445554443220 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh--HHHHHHH
Q 020193 197 ILIPAVSKAGMIDEAFRLLHNLVEDGHKPF---PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV--YTMLITM 271 (329)
Q Consensus 197 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 271 (329)
..+...+..|+.+-+..+++. .|..++ ..-.+.+.. .+..++......+++.+.+.|..++... -...+..
T Consensus 150 t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~ 225 (285)
T 1wdy_A 150 TALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 234444566776655555432 143332 222333333 4456666666777888888877665432 1123344
Q ss_pred HhccCCHHHHHHHHHHHHh-CCCCCChh---hHHHHHHHHHhCCchhHHHHHHHH
Q 020193 272 CGRGGRFVEAANYLVEMTE-MGLTPISR---CFDLVTDGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~~-~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~ 322 (329)
.++.|+.+- ++.+.+ .|..++.. -.+ -+....+.|..+-+.-+.+.
T Consensus 226 A~~~~~~~~----v~~Ll~~~g~~~~~~~~~g~t-~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 226 AVEKKHLGL----VQRLLEQEHIEINDTDSDGKT-ALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp HHHTTCHHH----HHHHHHSSSCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHH----HHHHHhccCCCccccCCCCCc-HHHHHHHcCcHHHHHHHHHc
Confidence 445666554 344444 56555432 222 33444566777666655554
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.94 E-value=15 Score=30.06 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=27.5
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccC-----hHHHHHHHHHHHhcCchhHHHHHHHHH
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPD-----KRTYAILVNAWCSSGKMREAQEFLQEM 113 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 113 (329)
.++..|...|++.+|.+++.++.+.=...| ...+..-++.|...+++.++...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345555555556665555555554311111 122333444555555555555555554
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.68 E-value=5.5 Score=24.97 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=6.8
Q ss_pred ccCCHHHHHHHHHHHHH
Q 020193 169 KSGEVEFCVEMYYSVCK 185 (329)
Q Consensus 169 ~~~~~~~a~~~~~~~~~ 185 (329)
+.|--+++...+.++..
T Consensus 80 rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHHHh
Confidence 34444444444433333
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.01 E-value=6 Score=24.86 Aligned_cols=12 Identities=42% Similarity=0.221 Sum_probs=4.9
Q ss_pred hcCChHHHHHHH
Q 020193 134 NAGYLESAKQMV 145 (329)
Q Consensus 134 ~~~~~~~a~~~~ 145 (329)
..|++++|..+.
T Consensus 52 NrG~Yq~Al~l~ 63 (116)
T 2p58_C 52 NRGDYASALQQG 63 (116)
T ss_dssp HTTCHHHHHHHH
T ss_pred cchhHHHHHHhc
Confidence 344444444333
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.31 E-value=7.1 Score=24.49 Aligned_cols=79 Identities=10% Similarity=-0.035 Sum_probs=36.7
Q ss_pred CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHH
Q 020193 31 GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110 (329)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (329)
+..++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+ ..||...|..|. -.+.|..+++...+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHH
Confidence 345555555555554431 1111112223444556666665554332 245555554443 23555555555555
Q ss_pred HHHHhCC
Q 020193 111 QEMSDKG 117 (329)
Q Consensus 111 ~~~~~~~ 117 (329)
..+...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5555444
No 269
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=82.11 E-value=18 Score=29.03 Aligned_cols=209 Identities=12% Similarity=0.104 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGY--LESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
....++.-|...++.++|...++++..... .......++......++ -+.+-.++..+.. ++-+.......+...
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~l 132 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKL 132 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 356778888899999999999888643221 12222333333222222 2334455555553 444444444444444
Q ss_pred HHccCCH----HHHHH----HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-------------hC----
Q 020193 167 ICKSGEV----EFCVE----MYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLV-------------ED---- 221 (329)
Q Consensus 167 ~~~~~~~----~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~~---- 221 (329)
+....+. ..|.. ++.++...++-|-......... . .-..+.+.++... ..
T Consensus 133 le~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~----~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g 207 (358)
T 3eiq_C 133 LKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT----V-DCVQARAALDKATVLLSMSKGGKRKDSVWGSG 207 (358)
T ss_dssp HHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCC
T ss_pred HHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhc----c-cchHHHHHHHHHHHHHhccchHHHHHHhcCCC
Confidence 4433331 12222 2333333333232211110000 0 1112222222111 10
Q ss_pred -CCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCC
Q 020193 222 -GHKPF---PSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR--FVEAANYLVEMTEMGLTP 295 (329)
Q Consensus 222 -~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p 295 (329)
+..|. ......++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+.|+-+
T Consensus 208 ~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 208 GGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 11221 123577888899999999999999998632111 12334444555555433 455778888888777665
Q ss_pred ChhhHHHHHHH
Q 020193 296 ISRCFDLVTDG 306 (329)
Q Consensus 296 ~~~~~~~l~~~ 306 (329)
.......+.+.
T Consensus 287 ~~q~~~Gf~~v 297 (358)
T 3eiq_C 287 IDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 270
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=82.11 E-value=6.1 Score=23.58 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=26.8
Q ss_pred HhhhhhCCCCCCHHHHHHHHHHHHccC-chhHHHHHHHHhhhcCCCccHHHHHHHHHHHHh
Q 020193 5 IELMKPYNLSVSPQTLSLIIEEFGKHG-LVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCE 64 (329)
Q Consensus 5 ~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 64 (329)
.+.|++.|+..++.- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344555565555544 23334444433 344555555555544333333333333444433
No 271
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=82.07 E-value=7.1 Score=30.03 Aligned_cols=206 Identities=10% Similarity=-0.012 Sum_probs=101.9
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH--HHHHHHHHHhc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT--YAILVNAWCSS 100 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 100 (329)
.+...+..|+.+-+..+++.-.. ++...-.+.+...+..|+.+-+ +.+.+.|..++... -...+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGAL----KNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGG----GSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 34445567887766666554322 2221123345555666766544 34445565444221 11233444566
Q ss_pred CchhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH-hHHHHHHHHHccCCHHHH
Q 020193 101 GKMREAQEFLQEMSDKGFNPPV---RGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLE-TFNSLIETICKSGEVEFC 176 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 176 (329)
|+.+-+..+++. |..++. ..+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 776655444443 433332 2224455566677776544 4444444333221 334555566778888777
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 020193 177 VEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMK 254 (329)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 254 (329)
..+++.-..... .+..-.+..+...+..|+.+ +.+.+.+.|..++.... .-...|+.+-+.-+++.-.
T Consensus 178 ~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 178 ILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHcCC
Confidence 666655333222 12122222233344556654 44555567777666542 1245666665555554433
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.60 E-value=7.6 Score=24.38 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHH
Q 020193 31 GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110 (329)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (329)
+..++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+ ..||...|..|.. .+.|..+++...+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 445555555555554431 1111112223445556666666554332 2455555544432 3455555555555
Q ss_pred HHHHhCC
Q 020193 111 QEMSDKG 117 (329)
Q Consensus 111 ~~~~~~~ 117 (329)
..+...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 5554444
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=79.81 E-value=21 Score=28.32 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=73.5
Q ss_pred HHHhcchHHHHHHH----HHHHHHcCCccChHHHHHHHHHHHhcCchh-HHHHHHHHHH----hCC--CCCCcccHHHHH
Q 020193 61 ALCEVKLFHGAYAL----IRRMIRKGFVPDKRTYAILVNAWCSSGKMR-EAQEFLQEMS----DKG--FNPPVRGRDLLV 129 (329)
Q Consensus 61 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~ 129 (329)
.+.+.|+...+-++ ++-+.+.++++|......++..+.....-+ .-.++.+.+. +.| ..-++.....+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34445555544443 355556678888888888887777665321 1122333332 222 223455666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 020193 130 QGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMID 209 (329)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 209 (329)
..|.+.+++.+|...|- . |..++...+..++--+...+... .++... ...+--|...++..
T Consensus 144 ~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfi-aRaVL~yL~l~n~~ 204 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH--------------TAPLYC-ARAVLPYLLVANVR 204 (336)
T ss_dssp HHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHH-HHHHHHHHHhCCHH
Confidence 88888888888777662 1 22323345544433332222211 112222 22333455667888
Q ss_pred HHHHHHHHHHh
Q 020193 210 EAFRLLHNLVE 220 (329)
Q Consensus 210 ~a~~~~~~~~~ 220 (329)
.|..+++...+
T Consensus 205 ~A~~~~~~f~~ 215 (336)
T 3lpz_A 205 AANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887766553
No 274
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=78.55 E-value=22 Score=27.83 Aligned_cols=69 Identities=14% Similarity=0.246 Sum_probs=42.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCChhh
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGR--FVEAANYLVEMTEMGLTPISRC 299 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~ 299 (329)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+...+++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 457888899999999999999988631111 12233444445544433 4556677877776666544333
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=78.54 E-value=24 Score=28.31 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--hhHHHHHHHHHHHcCCC
Q 020193 195 YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQ--FDDAFCFFSEMKIKGHP 259 (329)
Q Consensus 195 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 259 (329)
...++.-|...++.++|.+.++++...... ...+...+..++-+.++ .+...+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 455666777777777777777776432111 12233334444444332 24456666666665444
No 276
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.02 E-value=10 Score=25.74 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=17.1
Q ss_pred hhhhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcC
Q 020193 6 ELMKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFN 47 (329)
Q Consensus 6 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 47 (329)
+.+++.|+++++.-.. ++..+...+ .-.|.++++.+.+.+
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTA 47 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTC
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhC
Confidence 3444455555443322 222233333 444555555554444
No 277
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=75.33 E-value=15 Score=24.89 Aligned_cols=60 Identities=12% Similarity=-0.061 Sum_probs=31.8
Q ss_pred hhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCch
Q 020193 43 CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKM 103 (329)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 103 (329)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-.
T Consensus 13 l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34445444433 2233444444445556666666666655555555655666666666543
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.94 E-value=30 Score=27.48 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHH----HHHHHHcCCccCHHhHHHHH
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQM----VNKMIKQGFVLDLETFNSLI 164 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 164 (329)
+|.++..-|.+.+++++|.+++..-. ..+.+.|+...+-++ ++-..+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555666677777666543321 122333443333332 23344445555655555555
Q ss_pred HHHHccCCHH-HHHHHHHHHH----HcC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 020193 165 ETICKSGEVE-FCVEMYYSVC----KLG--LCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGM 237 (329)
Q Consensus 165 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (329)
..+.....-+ .=..+.+++. +.| ..-|+.....+...|.+.+++.+|+..|- .|..++...+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHH
Confidence 5554433211 1122222222 122 33456677778888888888888887762 23333445665555555
Q ss_pred HccCC
Q 020193 238 FRRGQ 242 (329)
Q Consensus 238 ~~~~~ 242 (329)
...+.
T Consensus 178 ~~~~~ 182 (336)
T 3lpz_A 178 YKQDE 182 (336)
T ss_dssp HHTSC
T ss_pred HHhcC
Confidence 44443
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=73.25 E-value=6.5 Score=29.56 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=8.3
Q ss_pred hcchHHHHHHHHHHHHHcC
Q 020193 64 EVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~ 82 (329)
+.|+.+....+++.+.+.|
T Consensus 14 ~~g~~~~v~~ll~~l~~~~ 32 (260)
T 3jxi_A 14 SRGSPDGLEGLLSFLLTHK 32 (260)
T ss_dssp HHTCGGGGTTHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcC
Confidence 3444444444444444433
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.95 E-value=12 Score=25.69 Aligned_cols=72 Identities=15% Similarity=0.102 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (329)
..-|+.-...-+...-.. +++.++|..|...++-. -...|..-...+-..|++.+|.++|+.-++.+-.|-.
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 456776666666554443 34889999998776544 4667888889999999999999999999988877744
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=72.11 E-value=28 Score=25.97 Aligned_cols=89 Identities=7% Similarity=-0.110 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 020193 198 LIPAVSKAGMIDEAFRLLHNLVED--GHKP----FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITM 271 (329)
Q Consensus 198 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 271 (329)
-+..+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 466777778888888888776532 2221 11112222222222222223333334442 2 3445555556666
Q ss_pred HhccCCHHHHHHHHHHHH
Q 020193 272 CGRGGRFVEAANYLVEMT 289 (329)
Q Consensus 272 ~~~~~~~~~a~~~~~~~~ 289 (329)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 667777777777765554
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.03 E-value=8.3 Score=28.30 Aligned_cols=208 Identities=12% Similarity=0.043 Sum_probs=87.2
Q ss_pred HHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHH---HHHHHHHHHhcCc
Q 020193 26 EFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRT---YAILVNAWCSSGK 102 (329)
Q Consensus 26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 102 (329)
..++.|+.+....+++.-.... .++.. -.+.+...+..|+.+-+. .+.+.|..++... -...+...+..|+
T Consensus 15 ~A~~~g~~~~~~~Ll~~g~~~~-~~~~~-g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 15 KATQYGIYERCRELVEAGYDVR-QPDKE-NVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT-CCCTT-SCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHcCChHHHHHHHHcCCCcC-CCCCC-CCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3456777766655555322111 11111 122344555666665443 3344443322110 1123344445566
Q ss_pred hhHHHHHHHHHHhCCCCCCccc--HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH---HhHHHHHHHHHccCCHHHHH
Q 020193 103 MREAQEFLQEMSDKGFNPPVRG--RDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL---ETFNSLIETICKSGEVEFCV 177 (329)
Q Consensus 103 ~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~ 177 (329)
.+- ++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++. .-.+.+..+....+.. ...
T Consensus 89 ~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~ 159 (240)
T 3eu9_A 89 LSM----VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPT 159 (240)
T ss_dssp HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTH
T ss_pred HHH----HHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHHHHhCChH-HHH
Confidence 543 344444454433221 1123444555666553 3444444443322 2223333333333322 222
Q ss_pred HHHHHHHHcCCCCchhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHccCChhHHHHHHHH
Q 020193 178 EMYYSVCKLGLCADVST---YKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSL--YAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 178 ~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
++ +.+.|..++... -...+...+..|+.+-+..+++. |..++... -..-+....+.|+.+-+..+++.
T Consensus 160 ~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 160 RL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 22 333333333211 11234445566777655555543 44333211 11234445666777666655554
Q ss_pred HHH
Q 020193 253 MKI 255 (329)
Q Consensus 253 ~~~ 255 (329)
...
T Consensus 233 ~~~ 235 (240)
T 3eu9_A 233 RQA 235 (240)
T ss_dssp C--
T ss_pred hhc
Confidence 433
No 283
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=71.63 E-value=14 Score=22.94 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHH
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (329)
...++|.++++.+..+|. ..|..++.++...|+...|
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHH
Confidence 355666666666665542 2466666666555554444
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.15 E-value=27 Score=25.31 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 020193 173 VEFCVEMYYSVCKLGLCAD-VSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKP 225 (329)
Q Consensus 173 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 225 (329)
...+.++|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4445555555544443221 3344444444555555555555555554444444
No 285
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=70.65 E-value=12 Score=25.57 Aligned_cols=34 Identities=21% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 68 FHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444445544444443344444444444444444
No 286
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=69.23 E-value=15 Score=25.10 Aligned_cols=63 Identities=5% Similarity=-0.070 Sum_probs=41.1
Q ss_pred HHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchh
Q 020193 41 NKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMR 104 (329)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 104 (329)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-..
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3455566544433 34455666666667788888888887776677777777778888777543
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.04 E-value=32 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=10.1
Q ss_pred HHhcCchhHHHHHHHHHHhCC
Q 020193 97 WCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 97 ~~~~~~~~~a~~~~~~~~~~~ 117 (329)
.+..|+.+.+..+++.+.+.+
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 344455555555555444443
No 288
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=67.90 E-value=15 Score=25.50 Aligned_cols=72 Identities=14% Similarity=-0.002 Sum_probs=50.8
Q ss_pred hhHHHHHHHH-hhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--CCccChHHHHHHHHHHHhcCchhH
Q 020193 33 VDNAVEVFNK-CTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK--GFVPDKRTYAILVNAWCSSGKMRE 105 (329)
Q Consensus 33 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ 105 (329)
.+.+.+-+.. +.+.|++.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-..+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3444444443 4566766654 3456677777777888999999999887 767777787778888888886544
No 289
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=67.58 E-value=64 Score=28.27 Aligned_cols=251 Identities=12% Similarity=0.059 Sum_probs=121.0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 020193 56 NSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNA 135 (329)
Q Consensus 56 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 135 (329)
+.-+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 3444455555555555443321 12344444556666667777666666666665544 34455666677776665
Q ss_pred CChHH--HHHHHHHHHHcCC-----------ccCHH-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh---hHHHH
Q 020193 136 GYLES--AKQMVNKMIKQGF-----------VLDLE-TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS---TYKIL 198 (329)
Q Consensus 136 ~~~~~--a~~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l 198 (329)
|.... ...=++.+...|- .++.. ....++........+ ..... . ..++.. .+...
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~---~--~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFAR---T--TGATDFTRQMAAVA 221 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHH---H--SCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHh---c--cCCChhhHHHHHHH
Confidence 54432 2222222222221 01110 011111111111111 11000 0 111211 11112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH----HHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYA----PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGR 274 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 274 (329)
+.-..+ .+.+.|...+........ .+..... .+.......+...++...+...... .++.....-.+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 222333 377888888887764432 2333222 2222333444345666666665443 2344344444555557
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 275 GGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 275 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
.|+++.|...|+.|..... ....-..-+.+++...|+.++|..+++....
T Consensus 298 ~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7899999888887754221 1344445566677888998888888776554
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=66.53 E-value=56 Score=27.32 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=54.6
Q ss_pred CchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHH
Q 020193 31 GLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFL 110 (329)
Q Consensus 31 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 110 (329)
.+.+-|.++- .+.|+|--...|..-...+...|++++|.++--...+ |+-.+..|.+.+-..-..-|+..-.+.+|
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 4444444433 3344454555566666667777777777666544332 34445666655554444455555566666
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 020193 111 QEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141 (329)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (329)
..+.+.| ..+..----+++.-...|+.+-.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~ll 448 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLL 448 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHH
Confidence 6666555 33332222334444444444333
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=65.78 E-value=39 Score=25.19 Aligned_cols=21 Identities=19% Similarity=0.014 Sum_probs=12.7
Q ss_pred HHHHHccCchhHHHHHHHHhh
Q 020193 24 IEEFGKHGLVDNAVEVFNKCT 44 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~ 44 (329)
++.+....++++|..++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 455566666666666666554
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.62 E-value=31 Score=24.00 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChH
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKR 88 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 88 (329)
..-|+.-...-+...-.+ +.+.++|..|...++-. -...|......+-..|++.+|.++|+.-++.+-.|-..
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 455776666666544333 44778999998776544 46678888888999999999999999999988887553
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.89 E-value=28 Score=24.60 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.9
Q ss_pred HHHHHHHHhCCCCCC
Q 020193 282 ANYLVEMTEMGLTPI 296 (329)
Q Consensus 282 ~~~~~~~~~~~~~p~ 296 (329)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555544
No 294
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=64.80 E-value=25 Score=23.47 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 67 LFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 67 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444444444444444
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=61.09 E-value=44 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG 101 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 101 (329)
-.+.+.|+-++-+|++.| .|....-..++-+.-.-|
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 356666666777777666 544444444444444444
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.39 E-value=46 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 020193 207 MIDEAFRLLHNLVEDGHKP-FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPP 260 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (329)
....+..+|..|...|+-. -...|......+...|++.+|..+|+.-.+.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3555666666665554322 23345555555566666666666666666554444
No 297
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=60.22 E-value=42 Score=23.62 Aligned_cols=17 Identities=6% Similarity=-0.128 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCCCCh
Q 020193 246 AFCFFSEMKIKGHPPNR 262 (329)
Q Consensus 246 a~~~~~~~~~~~~~~~~ 262 (329)
-.++.+.+.+.|..++.
T Consensus 157 ~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 157 YQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 35556666666655543
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.14 E-value=60 Score=25.40 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch--HHHHHHHHHHHHH
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL--FHGAYALIRRMIR 80 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 80 (329)
...++.-|...|+.++|...++++.... -.......++......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4677888889999999999998875332 123333444444444443 3345556666653
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.07 E-value=9.8 Score=28.53 Aligned_cols=55 Identities=11% Similarity=-0.094 Sum_probs=31.2
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHH-------HHHHHHHHHH--hcchHHHHHHHHHHH
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVL-------LYNSLLFALC--EVKLFHGAYALIRRM 78 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 78 (329)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 444567888888888888766655444422 2234443332 456666555555543
No 300
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=59.46 E-value=68 Score=26.19 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=18.0
Q ss_pred HHHhhhhhCCCCCCHHH--HHHHHHHHHccCchhHHHHHHH
Q 020193 3 KTIELMKPYNLSVSPQT--LSLIIEEFGKHGLVDNAVEVFN 41 (329)
Q Consensus 3 ~~~~~m~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 41 (329)
++++.+.+.|..|+... ....+...+..|+.+-+..+++
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 45555556665444321 1223334445566555444444
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=59.29 E-value=24 Score=25.99 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCc-cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh
Q 020193 13 LSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQ-CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87 (329)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (329)
..-|+.-...-+...-. .+.+.++|..|...|+-. -...|......+-..|++.+|.++|+.-++.+-.|-.
T Consensus 113 YknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp GTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred ccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45566666655554433 257778999998776544 4667888889999999999999999999988877743
No 302
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=59.11 E-value=57 Score=24.84 Aligned_cols=184 Identities=10% Similarity=0.036 Sum_probs=87.0
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc---cHHHHHHHHHhc
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR---GRDLLVQGLLNA 135 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 135 (329)
+...+..|+.+-+. .+.+.|..++...-...+...+..|+.+-+.. +.+.|..++.. .++ .+...+..
T Consensus 35 L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 34445567665544 44455655544322334555566677554443 44455444322 222 34444566
Q ss_pred CChHHHHHHHHHHHHcCCccCHH---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCCHHHH
Q 020193 136 GYLESAKQMVNKMIKQGFVLDLE---TFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS-TYKILIPAVSKAGMIDEA 211 (329)
Q Consensus 136 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a 211 (329)
|+.+-+..+++ .|..++.. -+.+.+...+..|+.+-+ +.+.+.|..+... .-...+...+..|..+-+
T Consensus 106 g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 76654444443 34443322 223444555566766543 3344444333111 223344455567787777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh
Q 020193 212 FRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV 264 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 264 (329)
..+++.-...+.. +..-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 178 ~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 178 ILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 6666654333222 222222222333444553 34455566677666654
No 303
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=58.29 E-value=65 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=18.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHH
Q 020193 190 ADVSTYKILIPAVSKAGMIDEAFRLL 215 (329)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 215 (329)
-++.....+...|.+.+++.+|+..|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 35566777777788888887777765
No 304
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=57.78 E-value=30 Score=21.19 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHH
Q 020193 36 AVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREA 106 (329)
Q Consensus 36 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 106 (329)
...+++.+.+.++ .+..-+..+-. .....++|..+++.+..+| ...|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 4456666666663 33333333222 2566778888887776553 45677777777776654433
No 305
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=56.78 E-value=1.1e+02 Score=27.18 Aligned_cols=277 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHcCCccChH---HHH
Q 020193 22 LIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALC-------EVKLFHGAYALIRRMIRKGFVPDKR---TYA 91 (329)
Q Consensus 22 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~---~~~ 91 (329)
.+|..|.++|++++|.++.++....- ..-...+-..+..|+ ....-++...-|++..+.....|+. .|.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~-~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANI-KKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhH-hhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCccCHHhH
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG-----------YLESAKQMVNKMIKQGFVLDLETF 160 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 160 (329)
.+..+=....+..+ +..+..-|-.+=-.+.+.+ -+.+..+.+.+.-+..+.+
T Consensus 236 Iig~cD~~~~~~~~------------v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~----- 298 (661)
T 2qx5_A 236 LIGRCDLSRKNIPA------------VTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN----- 298 (661)
T ss_dssp HHHTCCGGGCCCGG------------GCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT-----
T ss_pred HHhcccccccchHH------------HhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh-----
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 020193 161 NSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR 240 (329)
Q Consensus 161 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (329)
....++.-.|+++.|.+.+... ...+.+.+...+..|.-.+- -+.+......-...-+..||..|.+.
T Consensus 299 -lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 -YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKS 366 (661)
T ss_dssp -CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTT
T ss_pred -HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHH
Q ss_pred ---CChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHhccCCHHHHH-----------HHHHHHHhCCCCCCh------hh
Q 020193 241 ---GQFDDAFCFFSEMKIKG-HPPNRPVYTMLITMCGRGGRFVEAA-----------NYLVEMTEMGLTPIS------RC 299 (329)
Q Consensus 241 ---~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~-----------~~~~~~~~~~~~p~~------~~ 299 (329)
.+..+|.+.|--+...+ ..-.......+-......++++.-+ .++++.... +..+. ..
T Consensus 367 F~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i 445 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTI 445 (661)
T ss_dssp TTTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHH
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHhhhccC
Q 020193 300 FDLVTDGLKNCGKHDLAEKIELLEVSLRSV 329 (329)
Q Consensus 300 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 329 (329)
......-+...|++++|.+++.+..+.+.|
T Consensus 446 ~~~aA~~ae~~G~~~dAi~LY~La~~~d~v 475 (661)
T 2qx5_A 446 TEQAARRADEDGRIYDSILLYQLAEEYDIV 475 (661)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhcCHHHH
No 306
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=56.68 E-value=40 Score=22.28 Aligned_cols=65 Identities=12% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHcCCcc
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVK--LFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~ 85 (329)
...++.-|...|+.++|.+.++++.... -....+...+..++-+.+ ..+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567777888888888888888875321 111223333444444432 2456677777777666443
No 307
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=55.86 E-value=30 Score=22.47 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCChhhHHHHHHHHhccCCHHHHHHHH
Q 020193 207 MIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKI-KGHPPNRPVYTMLITMCGRGGRFVEAANYL 285 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 285 (329)
.+.+|..-+++.... .+|......++..+... ++.++++.+...+ .|+ .+.++...++...+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777554 34656666666665443 5666776666654 355 466777777777777766555 455
Q ss_pred HHHHh
Q 020193 286 VEMTE 290 (329)
Q Consensus 286 ~~~~~ 290 (329)
..|..
T Consensus 76 ~~m~~ 80 (119)
T 1wty_A 76 LEMLE 80 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 56653
No 308
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.51 E-value=33 Score=23.74 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=48.3
Q ss_pred HHHHHHHH-HHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChH
Q 020193 69 HGAYALIR-RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK--GFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 69 ~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
+.+.+-+. .+.+.|.+++. --..++..+...+..-.|.++++.+.+. +...+..|..--++.+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44444443 34566887655 3456677777777888899999999876 55566667767778888887654
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.44 E-value=46 Score=22.63 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 020193 77 RMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (329)
.+.+.|.+++. --..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-.
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 35556666444 33445556666666677778888877665445566666666777766644
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.56 E-value=58 Score=23.53 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=9.0
Q ss_pred HHHHhCCchhHHHHHHHH
Q 020193 305 DGLKNCGKHDLAEKIELL 322 (329)
Q Consensus 305 ~~~~~~g~~~~a~~~~~~ 322 (329)
....+.|..+-+.-+.+.
T Consensus 215 ~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 334455655555555443
No 311
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=54.54 E-value=58 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=17.6
Q ss_pred chHHHHHHHHHHHHHcCCccChHHHHHHHHHHH
Q 020193 66 KLFHGAYALIRRMIRKGFVPDKRTYAILVNAWC 98 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (329)
.+.+.|+-++-+|++.|-.|....-..++-+.-
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 556666666666666665544433333333333
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=54.53 E-value=78 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=9.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC
Q 020193 132 LLNAGYLESAKQMVNKMIKQG 152 (329)
Q Consensus 132 ~~~~~~~~~a~~~~~~~~~~~ 152 (329)
.+..|+.+-+..+++.....|
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~ 111 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERG 111 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhccccC
Confidence 334455544444444433333
No 313
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=53.41 E-value=57 Score=23.06 Aligned_cols=79 Identities=16% Similarity=0.166 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CC---------------hhhH
Q 020193 203 SKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHP--PN---------------RPVY 265 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~---------------~~~~ 265 (329)
.-.|.+.+++-++... + ..+..-|.. -+|-+..++..|...++.+....+. || ...+
T Consensus 44 yyngEY~R~Lf~L~~l---N-T~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 44 YLNGEYTRALFHLHKL---N-TCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHTTCHHHHHHHHHTC---C-BHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhcchHhHHHHHHHhc---c-hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 3467777766655321 1 001111222 2456677788888888777754332 21 1234
Q ss_pred HHHHHHHhccCCHHHHHHHHHH
Q 020193 266 TMLITMCGRGGRFVEAANYLVE 287 (329)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~ 287 (329)
+.+...|.+.|+.++|++.+..
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhh
Confidence 4444555556666666665544
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=52.26 E-value=48 Score=22.35 Aligned_cols=14 Identities=7% Similarity=0.038 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHc
Q 020193 243 FDDAFCFFSEMKIK 256 (329)
Q Consensus 243 ~~~a~~~~~~~~~~ 256 (329)
.-.|.++++.+.+.
T Consensus 33 h~ta~ei~~~l~~~ 46 (145)
T 3eyy_A 33 HATPDDILGEVRKT 46 (145)
T ss_dssp SBCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhh
Confidence 33444444444443
No 315
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.25 E-value=34 Score=20.14 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHcCCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 020193 254 KIKGHPPNRPVYTMLITMCGRGG-RFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311 (329)
Q Consensus 254 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 311 (329)
.+.|++.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 9 ~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 9 KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444332 22333333332 33445555555554443344444444444454444
No 316
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.79 E-value=83 Score=24.51 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=14.2
Q ss_pred HHHHHHHHccCchhHHHHHHHH
Q 020193 21 SLIIEEFGKHGLVDNAVEVFNK 42 (329)
Q Consensus 21 ~~l~~~~~~~~~~~~a~~~~~~ 42 (329)
+..+...++.|+.+-+..+++.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC
Confidence 3445555678888777666654
No 317
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.67 E-value=55 Score=22.42 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=49.6
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccC-hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNP 120 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 120 (329)
..|+.....-+...-.. +++.++|..|..+|+-.. +..|......+-..|++.+|.++|+.-++.+-.|
T Consensus 65 knD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555444333332222 348899999998876543 4567888899999999999999999998887666
No 318
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.17 E-value=56 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 020193 127 LLVQGLLNAGYLESAKQMVNKM 148 (329)
Q Consensus 127 ~l~~~~~~~~~~~~a~~~~~~~ 148 (329)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444455555555555544
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.92 E-value=91 Score=24.73 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=39.1
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHcCCcc
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV-KLFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~ 85 (329)
...++.-|...|+.++|.+.++++..... ....+...+..++-+. ..-+.+..++..+.+.|+-+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 46778888899999999999988853221 1122222333233221 23456677777777766543
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=50.54 E-value=58 Score=22.30 Aligned_cols=64 Identities=13% Similarity=0.301 Sum_probs=37.3
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHcCCc
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV--KLFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~ 84 (329)
...++.-|...|+.++|.+.++++.... -....+...+..++-+. ...+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4667778888888888888888875321 11122333344444432 2245566777777666544
No 321
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.22 E-value=57 Score=22.15 Aligned_cols=23 Identities=13% Similarity=0.008 Sum_probs=9.7
Q ss_pred ChhHHHHHHHHHHHcCCCCChhh
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPV 264 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~ 264 (329)
..-.|.++++.+.+.+...+..|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aT 54 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLAT 54 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHH
Confidence 34444444444444433333333
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=50.17 E-value=53 Score=21.79 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=10.4
Q ss_pred ChhHHHHHHHHHHHcCCCCChhh
Q 020193 242 QFDDAFCFFSEMKIKGHPPNRPV 264 (329)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~ 264 (329)
..-.|.++++.+.+.+...+..|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aT 55 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLAT 55 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHH
Confidence 34445555555544433333333
No 323
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.09 E-value=70 Score=23.18 Aligned_cols=180 Identities=8% Similarity=-0.050 Sum_probs=85.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchh---hHHHHHHHH
Q 020193 128 LVQGLLNAGYLESAKQMVNKMIKQGFVLDLET--FNSLIETICKSGEVEFCVEMYYSVCKLGLCADVS---TYKILIPAV 202 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~ 202 (329)
.+...+..|+.+.+..+++.+.+.+..++... -.+.+...+..|+.+- ++.+.+.|..++.. -.+ .+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQT-AAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCC-HHHHH
Confidence 34556777898888888887776665444321 1223444556677654 44444555444322 222 33344
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHhccC
Q 020193 203 SKAGMIDEAFRLLHNLVEDGHKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPV---YTMLITMCGRGG 276 (329)
Q Consensus 203 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 276 (329)
+..|+.+-+..+++.....+..+ +..-.+.+ ...+..|+.+- ++.+.+.|..++... -...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 56777776666665533211111 11222222 33344555444 344444554443221 122333344556
Q ss_pred CHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhCCchhHHHHHHH
Q 020193 277 RFVEAANYLVEMTEMGLTPISRC--FDLVTDGLKNCGKHDLAEKIEL 321 (329)
Q Consensus 277 ~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~ 321 (329)
+.+ +++.+.+.|..++... -...+....+.|..+-+.-+.+
T Consensus 162 ~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 162 SLS----MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp CHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred CHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 654 3444445565554221 1122233344566655554444
No 324
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.39 E-value=62 Score=23.47 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=12.5
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 020193 270 TMCGRGGRFVEAANYLVEMTE 290 (329)
Q Consensus 270 ~~~~~~~~~~~a~~~~~~~~~ 290 (329)
......|+...+.++.+.+.+
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 334456666666666666554
No 325
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.07 E-value=1.2e+02 Score=25.75 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCC-ccCh--HHH-HHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGF-VPDK--RTY-AILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
-...+|.+++.|...+.++.|..+..+..--.. .++. .+| --+.+.+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355666677777777777777666665431000 0111 112 22345555666677776666666543
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=48.31 E-value=26 Score=19.42 Aligned_cols=29 Identities=14% Similarity=0.068 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 020193 104 REAQEFLQEMSDKGFNPPVRGRDLLVQGL 132 (329)
Q Consensus 104 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 132 (329)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444443332223344555555444
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.36 E-value=62 Score=21.77 Aligned_cols=41 Identities=5% Similarity=-0.128 Sum_probs=17.9
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRG 275 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 275 (329)
..+...+..-.|.++++.+.+.+...+..|...-+..+...
T Consensus 29 ~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 29 EYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 33333444445555555555443333443433333433333
No 328
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=47.05 E-value=50 Score=20.57 Aligned_cols=58 Identities=7% Similarity=-0.020 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHH-----HHHcCCccChHHHHHHH
Q 020193 35 NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRR-----MIRKGFVPDKRTYAILV 94 (329)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~ 94 (329)
.|.++.++....|+.|+..+..-++..|...+- + +.++.++ ....|..|+..+.+.+=
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 355566666666776776777777666665543 1 2222111 12346677766665543
No 329
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=46.99 E-value=70 Score=22.24 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=32.0
Q ss_pred HHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch--HHHHHHHHHHH
Q 020193 20 LSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL--FHGAYALIRRM 78 (329)
Q Consensus 20 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~ 78 (329)
...++.-|...++.++|...++++.... -.......++......++ -+.+-.++..+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldrk~~ere~~s~LL~~L 71 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDL 71 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566777888888888888888875322 112233333443333333 22345555555
No 330
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.03 E-value=62 Score=21.35 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=10.1
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 020193 128 LVQGLLNAGYLESAKQMVNKM 148 (329)
Q Consensus 128 l~~~~~~~~~~~~a~~~~~~~ 148 (329)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 444444445555555544444
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.56 E-value=30 Score=23.20 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=25.6
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
.++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444454544555666666666665555555555555555555553
No 332
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.49 E-value=74 Score=22.13 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcCCccC-hHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCC
Q 020193 69 HGAYALIRRMIRKGFVPD-KRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPP 121 (329)
Q Consensus 69 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 121 (329)
+.+.++|..|...|+-.. +..|......+-..|++.+|.++|+.-++.+-.|.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 447789999999876544 45678888889999999999999999998876663
No 333
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=45.42 E-value=83 Score=22.67 Aligned_cols=32 Identities=9% Similarity=-0.088 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHhHHHHHHH
Q 020193 135 AGYLESAKQMVNKMIKQGFVLDLETFNSLIET 166 (329)
Q Consensus 135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (329)
..+.+.|+-.+-+|++.|-.|....-..++.+
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35556666666666665544443333333333
No 334
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.41 E-value=34 Score=22.60 Aligned_cols=45 Identities=22% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 58 LLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 444444445555666666666666555555555555666665553
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.86 E-value=96 Score=24.47 Aligned_cols=217 Identities=14% Similarity=0.084 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCcc---HHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHH
Q 020193 15 VSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQC---VLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYA 91 (329)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (329)
.|..-.+.|. ..+..|+.+.+..+++. |..++ ..-++ .+...+..|+.+-+ +.+.+.|..++...-.
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll~~----g~~~~~~d~~g~t-~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~ 85 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLIET----GVSPTIQNRFGCT-ALHLACKFGCVDTA----KYLASVGEVHSLWHGQ 85 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHHHT----TCCTTCCCTTCCC-HHHHHHHHCCHHHH----HHHHHHCCCCCCBTTB
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHHHc----CCCccccCCCCCc-HHHHHHHcCCHHHH----HHHHHCCCCccccCCC
Confidence 3444455544 44567887766666654 32222 22222 33444556666444 3444445444332222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHhCCCCCCc--------------------ccHHHHHHHHHhcC--ChHHHHHHHHHHH
Q 020193 92 ILVNAWCSSGKMREAQEFLQEMSDKGFNPPV--------------------RGRDLLVQGLLNAG--YLESAKQMVNKMI 149 (329)
Q Consensus 92 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~ 149 (329)
..+...+..|+.+-+..+++.....|..++. ...+ .+...+..| +.+-+. .+.
T Consensus 86 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~----~Ll 160 (364)
T 3ljn_A 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIK----ILV 160 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHH----HHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHH----HHH
Confidence 3444555778877777777765443433222 1223 334445556 444333 333
Q ss_pred HcCCccCHHh--HHHHHHHHHccCCHHHHHHHHHHHHH-cCCCC---chhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 020193 150 KQGFVLDLET--FNSLIETICKSGEVEFCVEMYYSVCK-LGLCA---DVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGH 223 (329)
Q Consensus 150 ~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 223 (329)
+.|..++... -.+.+...+..|+.+-+..+++.-.. .+..+ +..-.+.| ...+..|+.+-+..+ .+.|.
T Consensus 161 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~ga 235 (364)
T 3ljn_A 161 QLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRF----VEMGI 235 (364)
T ss_dssp HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHH----HTTTC
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHH----HHcCC
Confidence 3444433221 12233444566777655555443211 00001 11222222 234466776544444 44554
Q ss_pred CCChh---hHHHHHHHHHccCChhHHHHHHHH
Q 020193 224 KPFPS---LYAPIIKGMFRRGQFDDAFCFFSE 252 (329)
Q Consensus 224 ~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 252 (329)
.++.. -.+. +...+..|+.+-+..+++.
T Consensus 236 d~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 236 DVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 44322 1222 3334556776666666554
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.76 E-value=40 Score=22.56 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=29.9
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 020193 231 APIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278 (329)
Q Consensus 231 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (329)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555666666777778887777765555665555555555555543
No 337
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=44.72 E-value=1.4e+02 Score=24.91 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-----hHHHHHHHHHHHcCCC
Q 020193 204 KAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQF-----DDAFCFFSEMKIKGHP 259 (329)
Q Consensus 204 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 259 (329)
+.++.+.|..++.+|.+.|..|....-..+..+....|.- ..|...++.....|.+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 4578888888888888888776555555555555555542 2344555555555544
No 338
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=44.68 E-value=42 Score=19.05 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHh
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCS 99 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (329)
++.++..++...-.+.++..+.+..+.|. .+..+|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34444455554455555555555555542 244444444444433
No 339
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=44.08 E-value=91 Score=22.74 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=35.9
Q ss_pred HHHHHHHHHh---cchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCc-----hhHHHHHHHHHHhCCC
Q 020193 55 YNSLLFALCE---VKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGK-----MREAQEFLQEMSDKGF 118 (329)
Q Consensus 55 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 118 (329)
+..+|+++.+ -.+.+.|+-++-+|++.|-.|....-..++-+.-.-|. ...|...++.....|.
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345555544 36778888888888877766555444445555444443 2234444444455553
No 340
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.85 E-value=95 Score=22.90 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 020193 244 DDAFCFFSEMKIKGHPP-NRPVYTMLITMCGRGGRFVEAANYLVEMTEMGLTP 295 (329)
Q Consensus 244 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 295 (329)
+.+..+|..|...|+-- -...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34555555555554422 22334445555555566666666665555544444
No 341
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.75 E-value=1.2e+02 Score=24.04 Aligned_cols=62 Identities=6% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcC--chhHHHHHHHHHHhCCC
Q 020193 55 YNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSG--KMREAQEFLQEMSDKGF 118 (329)
Q Consensus 55 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 118 (329)
...++.-|...|+.++|...++++...... ...+.. ++......+ ..+.+..++..+.+.++
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~-~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRH-GVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHH-HHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 456788888999999999888877422111 111222 222222222 23456667777766553
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.19 E-value=45 Score=21.97 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=28.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 020193 232 PIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRF 278 (329)
Q Consensus 232 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 278 (329)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34555555666677777777777765555555555555555555543
No 343
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.99 E-value=1.3e+02 Score=24.21 Aligned_cols=76 Identities=13% Similarity=0.139 Sum_probs=44.9
Q ss_pred HHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcch--HHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 19 TLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKL--FHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 19 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
.-..++.-|...|+.++|.+.++++.... .-.......++......++ -+.+-.++..+...++-+.......+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35678899999999999999999985311 0112333334444444333 3456677777777665444433333333
No 344
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=42.31 E-value=80 Score=27.17 Aligned_cols=81 Identities=7% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 020193 166 TICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDD 245 (329)
Q Consensus 166 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 245 (329)
.++...+.+........+..+-+--+..-...++..|.+.|-.+.|.++++.+-.+-.. +...+ .-+..|.++|+++.
T Consensus 490 ~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 490 ALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhh
Q ss_pred HHH
Q 020193 246 AFC 248 (329)
Q Consensus 246 a~~ 248 (329)
+..
T Consensus 568 Vk~ 570 (570)
T 3f3f_C 568 VKS 570 (570)
T ss_dssp ---
T ss_pred ccC
No 345
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=41.86 E-value=1.8e+02 Score=25.51 Aligned_cols=177 Identities=8% Similarity=-0.063 Sum_probs=95.9
Q ss_pred ChHHHHHHHHHHHHcCCccCHHhHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHH
Q 020193 137 YLESAKQMVNKMIKQGFVLDLETFN----SLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAF 212 (329)
Q Consensus 137 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 212 (329)
+.+.|...+....+.... +..... .+.......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 667777777777654322 322222 22222333442445555555544322 33333444555556778888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHHc------------CCCCC----------hhh-----H
Q 020193 213 RLLHNLVEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKIK------------GHPPN----------RPV-----Y 265 (329)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~----------~~~-----~ 265 (329)
..|+.|..... ......-.+..++...|+.++|..+|..+... |.++. ... -
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 88887755321 12333445666777888888888888776532 21110 000 1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHH
Q 020193 266 TMLITMCGRGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIE 320 (329)
Q Consensus 266 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 320 (329)
..-+..+...|....|...+..+.+. . +......+.......|.++.+....
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 12234456778888888777776653 2 2233334455555667666665443
No 346
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.85 E-value=1e+02 Score=22.64 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=11.9
Q ss_pred HHHHhcchHHHHHHHHHHHHH
Q 020193 60 FALCEVKLFHGAYALIRRMIR 80 (329)
Q Consensus 60 ~~~~~~~~~~~a~~~~~~~~~ 80 (329)
-.|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345556666666666655544
No 347
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=41.83 E-value=79 Score=21.41 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhCC-------CCC---ChhhHHHHHHHHHccCChhHHHHHHHHHHH-cCCCC---ChhhHHHHHHHH
Q 020193 207 MIDEAFRLLHNLVEDG-------HKP---FPSLYAPIIKGMFRRGQFDDAFCFFSEMKI-KGHPP---NRPVYTMLITMC 272 (329)
Q Consensus 207 ~~~~a~~~~~~~~~~~-------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~ 272 (329)
.+..|..-+++..... ..| +......++..+... ++.++++.+...+ .|..| ++.++...++..
T Consensus 10 ~~~kal~~L~e~~~~~~~~~~~~~~~~~~~~~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a 87 (146)
T 1jog_A 10 VLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREA 87 (146)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCcCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHH
Confidence 4556666666654431 011 222333344433332 4566666666554 35543 367888888888
Q ss_pred hccCCHHHHHHHHHHHHh-CCCCCChhhHHHHHH--HHHh-CCchhHHHHHHHHHh
Q 020193 273 GRGGRFVEAANYLVEMTE-MGLTPISRCFDLVTD--GLKN-CGKHDLAEKIELLEV 324 (329)
Q Consensus 273 ~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~--~~~~-~g~~~~a~~~~~~~~ 324 (329)
.+.|-.+.. +.|..|.. ++. .+++|+.... .+.. ........++.+.+.
T Consensus 88 ~~~GlI~d~-~~w~~m~~~RN~--tvH~Y~e~~a~~v~~~I~~~l~~f~~l~~~l~ 140 (146)
T 1jog_A 88 LRFGLIGDM-SKWVAYRDMRNI--TSHTYDQEKAMAVYAQIDDFLIESSFLLEQLR 140 (146)
T ss_dssp HHTTSCSCH-HHHHHHHHHHTT--GGGTTSHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCcH-HHHHHHHHHhhH--hcccccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666 55666663 443 4555544322 2222 114555555555443
No 348
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=41.52 E-value=1.6e+02 Score=24.77 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=66.2
Q ss_pred hhhCCCCCCHHHHHHHHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccCh
Q 020193 8 MKPYNLSVSPQTLSLIIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDK 87 (329)
Q Consensus 8 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 87 (329)
..+.|++--...|..-.+.+...|++++|.++-...++ |+-.+..+.+.+-..-...|...--+.+|..+.+.|- .+.
T Consensus 352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g~-Ln~ 429 (494)
T 1bpo_A 352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQGQ-LNK 429 (494)
T ss_dssp HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHSC-CCH
T ss_pred HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccCc-cch
Confidence 45567877778888888999999999999888777654 3456677776655554455666667777777777653 344
Q ss_pred HHHHHHHHHHHhcCchhHHHHHH
Q 020193 88 RTYAILVNAWCSSGKMREAQEFL 110 (329)
Q Consensus 88 ~~~~~l~~~~~~~~~~~~a~~~~ 110 (329)
.---.+++.-...|+.+...+++
T Consensus 430 ~ESlEl~r~vL~q~r~~llekWl 452 (494)
T 1bpo_A 430 YESLELCRPVLQQGRKQLLEKWL 452 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhHHhHHHHhccHHHHHHHHH
Confidence 33334555555555554444433
No 349
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.19 E-value=62 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHH
Q 020193 101 GKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESA 141 (329)
Q Consensus 101 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 141 (329)
...+.|.++++.+...| +.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 35667777777776655 34666677776655654444
No 350
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=39.59 E-value=2.4e+02 Score=26.21 Aligned_cols=158 Identities=11% Similarity=-0.033 Sum_probs=85.4
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHcC----CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 020193 127 LLVQGLLNAGY---LESAKQMVNKMIKQG----FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199 (329)
Q Consensus 127 ~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 199 (329)
.++...|..|+ .+.|.+.|++....+ +.||. -..+...-.+.|..++-..+++..... .+..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHH
Confidence 45666777776 456777777765532 34443 233333344567766666667766654 3344456678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CChhHHHHHHHHHHH---cCCCCChhhHHHHHHHHhcc
Q 020193 200 PAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-GQFDDAFCFFSEMKI---KGHPPNRPVYTMLITMCGRG 275 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 275 (329)
.+++...+.....++++.....+......... ++.+...+ ...+.|.+++.+=-+ .....+...+..++......
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 88888888888888888766543222333333 33343332 122344444433111 11223445677777776654
Q ss_pred CCHHHHHHHHHHHHh
Q 020193 276 GRFVEAANYLVEMTE 290 (329)
Q Consensus 276 ~~~~~a~~~~~~~~~ 290 (329)
-.-++-.+-++...+
T Consensus 845 ~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 845 FSSEFELQQLEQFKK 859 (909)
T ss_dssp CCSHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 444444444555543
No 351
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.50 E-value=97 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHhcchHHHHHHHHHHHHHcCCccC
Q 020193 59 LFALCEVKLFHGAYALIRRMIRKGFVPD 86 (329)
Q Consensus 59 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 86 (329)
+...+..|+.+.-.++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3333444444444445555555554443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.97 E-value=1.8e+02 Score=27.18 Aligned_cols=27 Identities=15% Similarity=-0.020 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 299 CFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 299 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
.|..++..+.+.+-++.+.++.+++.+
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 455566666666666666666555543
No 353
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.71 E-value=1.1e+02 Score=22.13 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=33.6
Q ss_pred HHHHHHH---hcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC-----HHHHHHHHHHHHHcCC
Q 020193 127 LLVQGLL---NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-----VEFCVEMYYSVCKLGL 188 (329)
Q Consensus 127 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 188 (329)
-+|+++. +..+.+.|+-.+-+|.+.| .|....-..++.+.-..|. ...|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444443 3467777777777777777 5554444444444444443 2334444455555555
No 354
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=37.62 E-value=39 Score=16.66 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=13.2
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 301 DLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 301 ~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
..-+.+.+..|+++.+..+...+..
T Consensus 14 EQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 14 RKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3344455556666666655544433
No 355
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.33 E-value=1.8e+02 Score=24.19 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=15.1
Q ss_pred cChHHHHHHHHHHHhcCchhHHHHHHHHHHh
Q 020193 85 PDKRTYAILVNAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 85 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 115 (329)
.+......++.. ..|+...+..+++.+..
T Consensus 192 i~~~al~~L~~~--~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 192 LPDETRRAIAEL--VNGDARRALNTLEMMAD 220 (447)
T ss_dssp CCHHHHHHHHHH--HCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--CCCCHHHHHHHHHHHHH
Confidence 344444444444 34666666666665543
No 356
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.13 E-value=69 Score=20.81 Aligned_cols=42 Identities=5% Similarity=-0.077 Sum_probs=22.5
Q ss_pred HHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Q 020193 75 IRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDK 116 (329)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 116 (329)
|+.+.+..+.|+...--.-+..+...++++.|.++...+...
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 333334345444333333344455667777777777766543
No 357
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.95 E-value=86 Score=20.38 Aligned_cols=44 Identities=11% Similarity=-0.040 Sum_probs=29.9
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 38 EVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
-+|+.+....+.|++..--.-+..+...++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 34556666666565554444455567789999999999888754
No 358
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=36.31 E-value=34 Score=18.96 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHcC-CccC
Q 020193 65 VKLFHGAYALIRRMIRKG-FVPD 86 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~-~~~~ 86 (329)
.-+++.|...|.++...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 456778888888777654 4444
No 359
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.10 E-value=74 Score=23.83 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=12.4
Q ss_pred HHHhcCchhHHHHHHHHHHhCC
Q 020193 96 AWCSSGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~ 117 (329)
..+..|+.+.+..+++...+.+
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHhhcc
Confidence 3345566666666666555444
No 360
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.30 E-value=1.2e+02 Score=21.72 Aligned_cols=17 Identities=12% Similarity=0.007 Sum_probs=8.8
Q ss_pred HHHHccCchhHHHHHHH
Q 020193 25 EEFGKHGLVDNAVEVFN 41 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~ 41 (329)
...++.|+.+.+..+++
T Consensus 8 ~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 8 LLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33445666655555544
No 361
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=34.68 E-value=1e+02 Score=21.67 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=37.6
Q ss_pred CccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhH
Q 020193 49 QQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMRE 105 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 105 (329)
.|....++.++..++...-.+.++-.+.+....|. .+..+|..-.+.+++..-+..
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~r 163 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVR 163 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777788888877777774 466667666666665544333
No 362
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=33.98 E-value=76 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=5.8
Q ss_pred hcCchhHHHHHHHH
Q 020193 99 SSGKMREAQEFLQE 112 (329)
Q Consensus 99 ~~~~~~~a~~~~~~ 112 (329)
..|+.+.+..+++.
T Consensus 11 ~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 11 ARGDVQEVRRLLHR 24 (156)
T ss_dssp HHTCHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHh
Confidence 33444444444433
No 363
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.90 E-value=1.3e+02 Score=21.55 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=6.7
Q ss_pred HHHhcchHHHHHHHH
Q 020193 61 ALCEVKLFHGAYALI 75 (329)
Q Consensus 61 ~~~~~~~~~~a~~~~ 75 (329)
..+..|+.+....++
T Consensus 12 ~A~~~g~~~~v~~ll 26 (231)
T 3aji_A 12 NLAYSGKLDELKERI 26 (231)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHhCCHHHHHHHH
Confidence 334444444444444
No 364
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.12 E-value=96 Score=21.81 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=43.4
Q ss_pred CccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChH
Q 020193 83 FVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLE 139 (329)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (329)
+.|....++-++..++...-.+.++..+.+....| ..+..+|---.+.+++..-+.
T Consensus 107 v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaReQF~~ 162 (174)
T 2p22_A 107 AVAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQQFLV 162 (174)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 45666778999999999999999999999999888 466777777677666554333
No 365
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.47 E-value=1.2e+02 Score=20.93 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHcCCCC--chhhHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 020193 171 GEVEFCVEMYYSVCKLGLCA--DVSTYKILIP-A-----VSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 171 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 219 (329)
|++-+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666655443333 3334444444 1 123456666666665544
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.84 E-value=3.2e+02 Score=25.49 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=32.3
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCH----HhHHHHHHHHHccC
Q 020193 124 GRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDL----ETFNSLIETICKSG 171 (329)
Q Consensus 124 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 171 (329)
-|..+++.+.+.+-++-+.++-+...+.--.-|. ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5677888888889888888888877764222233 35666666665543
No 367
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.29 E-value=1.6e+02 Score=21.69 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVE 220 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~ 220 (329)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3345555666666666655544
No 368
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=31.21 E-value=1.5e+02 Score=21.58 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHHHHH---hcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCC-----HHHHHHHHHHHHHcCC
Q 020193 126 DLLVQGLL---NAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGE-----VEFCVEMYYSVCKLGL 188 (329)
Q Consensus 126 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 188 (329)
--+|+++. +..+++.|+-.+-+|.+.|-.|....-..++.+.-..|. ...|...++.....|.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 33444443 346677777777777777666554444444444433332 3344444444445554
No 369
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=31.08 E-value=1.4e+02 Score=20.94 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=11.3
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCc
Q 020193 167 ICKSGEVEFCVEMYYSVCKLGLCAD 191 (329)
Q Consensus 167 ~~~~~~~~~a~~~~~~~~~~~~~~~ 191 (329)
.+..|+.+.-.++.+.+.+.|..++
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344444444444444555544433
No 370
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.05 E-value=1.5e+02 Score=22.11 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=29.9
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHcCCcc-------ChHHHHHHHHHHH--hcCchhHHHHHHHH
Q 020193 58 LLFALCEVKLFHGAYALIRRMIRKGFVP-------DKRTYAILVNAWC--SSGKMREAQEFLQE 112 (329)
Q Consensus 58 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 112 (329)
.+...+..|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 3444566788888888887776665332 2222334444433 23555555555544
No 371
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=30.95 E-value=1.4e+02 Score=20.95 Aligned_cols=91 Identities=15% Similarity=-0.015 Sum_probs=38.1
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 020193 120 PPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILI 199 (329)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 199 (329)
++...-...+.++.+.++.+. ...+..+.. .++..+-...+.++.+.++.+ +...+..+... ++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALKD---EDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTTC---SSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHcC---CCHHHHHHHH
Confidence 344444445555555554332 222222222 234444444555555554432 22233333221 4444455555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 020193 200 PAVSKAGMIDEAFRLLHNLV 219 (329)
Q Consensus 200 ~~~~~~~~~~~a~~~~~~~~ 219 (329)
.++.+.|..+ +...+..+.
T Consensus 160 ~aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 160 DALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHHHCSHH-HHHHHHHHH
T ss_pred HHHHHhCchh-HHHHHHHHH
Confidence 5555555433 333333333
No 372
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=30.79 E-value=1.5e+02 Score=21.24 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCcc
Q 020193 24 IEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVP 85 (329)
Q Consensus 24 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 85 (329)
+...++.|+.+....+++.-......++..-++. +...+..|+.+-+ +.+.+.|..+
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~ 66 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEIV----EFLLQLGVPV 66 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHHH----HHHHHTTCCS
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHHH----HHHHHhCCCC
Confidence 5556778888888888776432211222222222 3334455555433 3444555444
No 373
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=30.02 E-value=48 Score=22.00 Aligned_cols=45 Identities=4% Similarity=0.011 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCchhHHHHHHHHHhh
Q 020193 280 EAANYLVEMTEMGLTPISRCFDLVTDGLKNCGKHDLAEKIELLEVS 325 (329)
Q Consensus 280 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 325 (329)
.+..+|..|.+.+.- +..-...|-..+.+.|+.+...++.+...+
T Consensus 41 s~ldlF~~Lek~~~L-~~~nl~~L~eLL~~I~R~DLlkkI~~y~~~ 85 (130)
T 1n3k_A 41 TGSAWFSFLESHNKL-DKDNLSYIEHIFEISRRPDLLTMVVDYRTR 85 (130)
T ss_dssp SHHHHHHHHHHTTTC-CSSCCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCC-CCccHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 456666666655532 222344455555566666666555544433
No 374
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.94 E-value=72 Score=21.14 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=7.4
Q ss_pred HHhcchHHHHHHHHHH
Q 020193 62 LCEVKLFHGAYALIRR 77 (329)
Q Consensus 62 ~~~~~~~~~a~~~~~~ 77 (329)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555544444443
No 375
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=29.67 E-value=2.3e+02 Score=23.16 Aligned_cols=155 Identities=10% Similarity=0.002 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHcC----CccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 020193 126 DLLVQGLLNAGY---LESAKQMVNKMIKQG----FVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKIL 198 (329)
Q Consensus 126 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 198 (329)
..++...|..|+ .+.|.+.|+...+.+ ++||.. ..+...-.+ ..+.-..+++..... .+..--..+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr--~~Vy~~~~~--~~~~~~~l~~~y~~s---~~~~ek~~l 273 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVT--LAVFAVGAQ--STEGWDFLYSKYQFS---LSSTEKSQI 273 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGH--HHHHHHHTT--SHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcc--eeEEeeeeC--CHHHHHHHHHHHhcC---CCHHHHHHH
Confidence 346666777776 557777888776542 344432 222211122 233344455555443 445556778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CChhHHHHHHH----HHHHcCCCCChhhHHHHHHHHh
Q 020193 199 IPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLYAPIIKGMFRR-GQFDDAFCFFS----EMKIKGHPPNRPVYTMLITMCG 273 (329)
Q Consensus 199 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~ 273 (329)
+.+++...+.....++++............... ++.+...+ -..+.|.+++. .+.+. ..++...+..++....
T Consensus 274 l~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~ 351 (419)
T 3rjo_A 274 EFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTT 351 (419)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHh
Confidence 888888899999999998887655322334333 34444332 22345555543 23332 2234456777777665
Q ss_pred ccCCHHHHHHHHHHHH
Q 020193 274 RGGRFVEAANYLVEMT 289 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~ 289 (329)
..-.-++-.+-++...
T Consensus 352 ~~~~t~~~l~e~~~Ff 367 (419)
T 3rjo_A 352 NQFSTRTRLEEVKGFF 367 (419)
T ss_dssp TTCCSHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHH
Confidence 4433333333333333
No 376
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=29.41 E-value=1.1e+02 Score=19.73 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=23.7
Q ss_pred HhhhcCCCccHHHHHHHHHHHHhcchHHHH--HHHHHHHHHcC-CccChHHHHHHH
Q 020193 42 KCTAFNCQQCVLLYNSLLFALCEVKLFHGA--YALIRRMIRKG-FVPDKRTYAILV 94 (329)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~-~~~~~~~~~~l~ 94 (329)
.+.+.|.+.|..+... .+.+.|.++++ ...+.++.... ...+...|..++
T Consensus 64 ~L~~~g~piD~vtv~~---~L~~~~~l~~~GG~~yL~~L~~~~ps~ani~~Ya~iV 116 (119)
T 1b79_A 64 RLQESGSPIDLITLAE---SLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIV 116 (119)
T ss_dssp HHHHTTCCCSHHHHHH---HHHTTTTHHHHTHHHHHHHHHHHSCSSSCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHH---HHhccCchhhcCcHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344555666554433 33444555442 44555555442 233555555544
No 377
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.26 E-value=1.5e+02 Score=21.82 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=8.3
Q ss_pred HHHhCCchhHHHHHHH
Q 020193 306 GLKNCGKHDLAEKIEL 321 (329)
Q Consensus 306 ~~~~~g~~~~a~~~~~ 321 (329)
..+..|..+-+.-+.+
T Consensus 142 ~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 142 LAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3445566655555444
No 378
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.80 E-value=1e+02 Score=19.01 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=16.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHH
Q 020193 265 YTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 265 ~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
+.--...+.+.|++++|++..+..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHH
Confidence 444556677778888887776554
No 379
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.58 E-value=1.3e+02 Score=25.19 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH---------HHHHHHHHccCChhHHHHHHHHH
Q 020193 194 TYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPSLY---------APIIKGMFRRGQFDDAFCFFSEM 253 (329)
Q Consensus 194 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~a~~~~~~~ 253 (329)
..+.+...|.+.++...+..+++.+...+..|+...| --+...+...+++.+|.+.+..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 4567778888888888888888888776654333321 12334455566677666655543
No 380
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=28.46 E-value=1.5e+02 Score=20.70 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=8.3
Q ss_pred CHHhHHHHHHHHHccCC
Q 020193 156 DLETFNSLIETICKSGE 172 (329)
Q Consensus 156 ~~~~~~~l~~~~~~~~~ 172 (329)
+..+-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGD 105 (201)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444444555555444
No 381
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=28.42 E-value=1.2e+02 Score=19.63 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHHHcCCc-cChHHHHHHHHHHHh---cCchhHHHHHHHHHHhCC
Q 020193 66 KLFHGAYALIRRMIRKGFV-PDKRTYAILVNAWCS---SGKMREAQEFLQEMSDKG 117 (329)
Q Consensus 66 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 117 (329)
..+++|.+.+..|++.-+. -.+..||..+..+.. .++. ..+|..+.+.+
T Consensus 41 ~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~ 93 (120)
T 1q2z_A 41 PYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDG 93 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCC
Confidence 4567777777777654322 255667777765542 2322 34455555544
No 382
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.35 E-value=46 Score=21.76 Aligned_cols=40 Identities=10% Similarity=0.038 Sum_probs=17.1
Q ss_pred HHHHHHccCchhHHHHHHHHhhhcCCCccHHHHHHHHHHHHhc
Q 020193 23 IIEEFGKHGLVDNAVEVFNKCTAFNCQQCVLLYNSLLFALCEV 65 (329)
Q Consensus 23 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 65 (329)
.|...+..++.+-|.++++...+.| +...|.+++..|...
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdL 77 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDL 77 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhc
Confidence 3344444444444444444444433 333444444444433
No 383
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=27.74 E-value=88 Score=18.51 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=21.0
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 020193 257 GHPPNRPVYTMLITMCGRGGRFVEAANYLVEM 288 (329)
Q Consensus 257 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 288 (329)
+++|+..||+-+...+-+.--..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 46788888888777665555455556555554
No 384
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=27.17 E-value=3.4e+02 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=20.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPISRCFDLVTDGLKNCG 311 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 311 (329)
+.+++-.|++++.++.+.. |+...|..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 4556666666666665432 45555655555555444
No 385
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.70 E-value=1.6e+02 Score=20.38 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=6.6
Q ss_pred CchhHHHHHHHHh
Q 020193 31 GLVDNAVEVFNKC 43 (329)
Q Consensus 31 ~~~~~a~~~~~~~ 43 (329)
|++=+|-++++..
T Consensus 46 g~yfeaHEvLEe~ 58 (161)
T 2ijq_A 46 GEFHESHDCFEDE 58 (161)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH
Confidence 5555555555544
No 386
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.65 E-value=1.7e+02 Score=24.49 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcc--------cHH-HHHHHHHhcCChHHHHHHHHHHHHc
Q 020193 89 TYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVR--------GRD-LLVQGLLNAGYLESAKQMVNKMIKQ 151 (329)
Q Consensus 89 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 151 (329)
..+.+++.|.+.++...+..++..+...+..|+.. +|. -+.+.+...+++.+|.+.+.+....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 35677788888888888888888887765433322 222 2445566778888888777765543
No 387
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=26.31 E-value=4e+02 Score=24.75 Aligned_cols=159 Identities=12% Similarity=0.073 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCc---hhHHHHHHHHHHhCC----CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHH
Q 020193 91 AILVNAWCSSGK---MREAQEFLQEMSDKG----FNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSL 163 (329)
Q Consensus 91 ~~l~~~~~~~~~---~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 163 (329)
..++...+..|+ .+.|.+.|+.....+ ++|+ .-..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~d--lr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN--LRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTT--THHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHH--HHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345666777776 456777787776532 3343 34444445556787777677777777653 44455678
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHc
Q 020193 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAG-MIDEAFRLLHNLVE---DGHKPFPSLYAPIIKGMFR 239 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~ 239 (329)
+.+++...+.....++++.....+......... ++.+...+. ..+.|.+.+..=-+ .........+..++.....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~ 843 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHT
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 888888889888888887766533212222333 333333322 23445555543211 1222344567778877766
Q ss_pred cCChhHHHHHHHHHHH
Q 020193 240 RGQFDDAFCFFSEMKI 255 (329)
Q Consensus 240 ~~~~~~a~~~~~~~~~ 255 (329)
.-.-++-.+-++...+
T Consensus 844 ~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 844 RFSSEFELQQLEQFKK 859 (909)
T ss_dssp TCCSHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHh
Confidence 5544444444455443
No 388
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.94 E-value=1.2e+02 Score=18.45 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 020193 72 YALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYL 138 (329)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (329)
..+++.+.+.|+- +..-+..+-. .....++|..+++.+...| ..+|..++.++...+..
T Consensus 25 ~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 25 SYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHH
Confidence 3455555555543 2322222222 2455666666776665544 45566666666655543
No 389
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.90 E-value=73 Score=22.98 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHc
Q 020193 57 SLLFALCEVKLFHGAYALIRRMIRK 81 (329)
Q Consensus 57 ~l~~~~~~~~~~~~a~~~~~~~~~~ 81 (329)
..+..|.+.|.+++|.++|++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3455778888888888888886544
No 390
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=25.48 E-value=1.8e+02 Score=20.52 Aligned_cols=171 Identities=14% Similarity=0.005 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCccChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 020193 51 CVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFVPDKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQ 130 (329)
Q Consensus 51 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 130 (329)
+...-...+..+.+.+.. .+...+..+.. .++...-...+.++...++.+.. ..+..+.. .++...-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 444444455555555542 23333333333 23555555556666666653333 33333332 245555566666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 020193 131 GLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDE 210 (329)
Q Consensus 131 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (329)
++.+.++.+. ...+..+.+ .++..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.+.. .
T Consensus 104 aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~ 174 (211)
T 3ltm_A 104 ALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE-R 174 (211)
T ss_dssp HHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-H
T ss_pred HHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-h
Confidence 6666666433 333333332 345556666666666666543 3333333333 25555666666666666653 4
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 020193 211 AFRLLHNLVEDGHKPFPSLYAPIIKGMFRRG 241 (329)
Q Consensus 211 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 241 (329)
+...+..+... ++..+-...+.++.+.+
T Consensus 175 ~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 175 VRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 44444444442 24444444445444443
No 391
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=25.22 E-value=4.9e+02 Score=25.51 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=22.1
Q ss_pred hcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 020193 99 SSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAG 136 (329)
Q Consensus 99 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (329)
..+++..|++++.++.+.. |+...|..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 5566667777766666543 55566666666655554
No 392
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.72 E-value=1.9e+02 Score=20.44 Aligned_cols=79 Identities=16% Similarity=0.008 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHhHHHHHH
Q 020193 86 DKRTYAILVNAWCSSGKMREAQEFLQEMSDKGFNPPVRGRDLLVQGLLNAGYLESAKQMVNKMIKQGFVLDLETFNSLIE 165 (329)
Q Consensus 86 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 165 (329)
+...-...+..+...++.+. ...+..+.. .++...-...+.++.+.++.+. ...+..+.. .++..+-...+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~ 103 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAV 103 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHH
Confidence 44444444455555544222 222222222 1344444444555555554322 222222222 234444444455
Q ss_pred HHHccCC
Q 020193 166 TICKSGE 172 (329)
Q Consensus 166 ~~~~~~~ 172 (329)
++.+.++
T Consensus 104 aL~~~~~ 110 (211)
T 3ltm_A 104 ALGQIGD 110 (211)
T ss_dssp HHHHHCC
T ss_pred HHHHhCc
Confidence 5555444
No 393
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=24.70 E-value=2.3e+02 Score=21.51 Aligned_cols=28 Identities=14% Similarity=-0.121 Sum_probs=12.2
Q ss_pred CccHHHHHHHHHHHHhcch-HHHHHHHHH
Q 020193 49 QQCVLLYNSLLFALCEVKL-FHGAYALIR 76 (329)
Q Consensus 49 ~~~~~~~~~l~~~~~~~~~-~~~a~~~~~ 76 (329)
+.+..+.+.+..+....|- -.+...+|+
T Consensus 35 plspr~l~~~~k~ve~~g~~sPe~i~~f~ 63 (262)
T 1d1d_A 35 PLEPKLITRLADTVRTKGLRSPITMAEVE 63 (262)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3444444444444444432 234444444
No 394
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=24.68 E-value=1.3e+02 Score=18.52 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=15.6
Q ss_pred cchHHHHHHHHHHHHHcCCccChHHHHHHHH
Q 020193 65 VKLFHGAYALIRRMIRKGFVPDKRTYAILVN 95 (329)
Q Consensus 65 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 95 (329)
.|++=+|.++++..-.....|....|..+|.
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq 44 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVIL 44 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 3666666666666555442233344444444
No 395
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.12 E-value=1.1e+02 Score=19.95 Aligned_cols=52 Identities=10% Similarity=-0.040 Sum_probs=33.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 020193 230 YAPIIKGMFRRGQFDDAFCFFSEMKIKGHPPNRPVYTMLITMCGRGGRFVEAANY 284 (329)
Q Consensus 230 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 284 (329)
|--.|...+.+++.+-|.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445566666777777777777777654 556677777777666666655543
No 396
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.08 E-value=99 Score=17.06 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=14.0
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC
Q 020193 274 RGGRFVEAANYLVEMTEMGLTPI 296 (329)
Q Consensus 274 ~~~~~~~a~~~~~~~~~~~~~p~ 296 (329)
..|+.+.|+..+-.|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 35667777777666665544444
No 397
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.61 E-value=1.8e+02 Score=19.88 Aligned_cols=48 Identities=10% Similarity=0.127 Sum_probs=19.9
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHhcchHHHHHHHHHHHHHcCCc
Q 020193 35 NAVEVFNKCTAFNCQQCVLLYNSLLFALCEVKLFHGAYALIRRMIRKGFV 84 (329)
Q Consensus 35 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 84 (329)
.+..+++.+.+.|...|...-...+....+.| .....+-.++...|+.
T Consensus 48 ~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 48 DYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 34444444444444434333334444333322 1233444444455543
No 398
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.76 E-value=1.2e+02 Score=21.65 Aligned_cols=19 Identities=5% Similarity=-0.080 Sum_probs=10.3
Q ss_pred HHHHccCchhHHHHHHHHh
Q 020193 25 EEFGKHGLVDNAVEVFNKC 43 (329)
Q Consensus 25 ~~~~~~~~~~~a~~~~~~~ 43 (329)
...++.|+.+.+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 3344566666655555543
No 399
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.29 E-value=2.2e+02 Score=20.34 Aligned_cols=24 Identities=4% Similarity=-0.136 Sum_probs=13.6
Q ss_pred HHHHccCChhHHHHHHHHHHHcCC
Q 020193 235 KGMFRRGQFDDAFCFFSEMKIKGH 258 (329)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~ 258 (329)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334555666666566666665554
No 400
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=21.36 E-value=2.4e+02 Score=20.55 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=8.6
Q ss_pred HhcchHHHHHHHHHHHHHcC
Q 020193 63 CEVKLFHGAYALIRRMIRKG 82 (329)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~ 82 (329)
+..|+.+.+..+++.+.+.|
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g 29 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNS 29 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 34444444444444444433
No 401
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.17 E-value=1.7e+02 Score=18.74 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 020193 172 EVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVE-DGHKPFPSLYAPIIKGMFRRGQFDDAFCFF 250 (329)
Q Consensus 172 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 250 (329)
.+.+|..-+++.... .+|......++..+... ++.++++.....+ .|. .+.++...+....+.|-.+.. +.|
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 567777777777554 35666666666665443 6667777766554 355 356667777777777766554 444
Q ss_pred HHHH
Q 020193 251 SEMK 254 (329)
Q Consensus 251 ~~~~ 254 (329)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 402
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=21.02 E-value=1.9e+02 Score=19.20 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHcc
Q 020193 164 IETICKSGEVEFCVEMYYSVCKLGLCADVSTYKILIPAVSKAGMIDEAFRLLHNLVEDGHKPFPS---LYAPIIKGMFRR 240 (329)
Q Consensus 164 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 240 (329)
+...++.|+.+....+++.-...-...+..-.+. +...+..|+.+-+..++ +.|..++.. -.+. +...+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~ 85 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP-LHFAAGYNRVSVVEYLL----QHGADVHAKDKGGLVP-LHNACSY 85 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCH-HHHHHHcChHHHHHHHH----hcCCCCCccCCCCCCH-HHHHHHc
Confidence 3444667887766666543111101112221233 33445667765544444 445444322 2223 3334556
Q ss_pred CChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 020193 241 GQFDDAFCFFSEMKIKGHPPNRP---VYTMLITMCGRGGRFVEAANYLVEMTEMGLTPI 296 (329)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 296 (329)
|+.+-+ +.+.+.|..++.. -.+.+. ..+..|+.+ +++.+.+.|..++
T Consensus 86 ~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~ga~~~ 135 (165)
T 3twr_A 86 GHYEVA----ELLVKHGAVVNVADLWKFTPLH-EAAAKGKYE----ICKLLLQHGADPT 135 (165)
T ss_dssp TCHHHH----HHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CcHHHH----HHHHhCCCCCCCcCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCc
Confidence 666543 4444555544432 233333 334556654 4444556666655
No 403
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=20.86 E-value=1.8e+02 Score=18.85 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=6.7
Q ss_pred ChHHHHHHHHHHHh
Q 020193 86 DKRTYAILVNAWCS 99 (329)
Q Consensus 86 ~~~~~~~l~~~~~~ 99 (329)
+...|..++.-...
T Consensus 93 ni~~Ya~iV~e~s~ 106 (123)
T 3gxv_A 93 NIEAYVEEIKNASI 106 (123)
T ss_dssp CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544433
No 404
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.75 E-value=1.6e+02 Score=18.32 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCccChHHHHHHHHHHHhcCc
Q 020193 71 AYALIRRMIRKGFVPDKRTYAILVNAWCSSGK 102 (329)
Q Consensus 71 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 102 (329)
+.++.+++..-|+.|+..+...++..|...+-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l 59 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ 59 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 45555666666777777777777777766653
No 405
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.31 E-value=2.3e+02 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=12.0
Q ss_pred HHHHhcCchhHHHHHHHHHHh
Q 020193 95 NAWCSSGKMREAQEFLQEMSD 115 (329)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~~~~ 115 (329)
..|.+.|.+++|.+++++...
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 345566666666666666543
No 406
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.06 E-value=1.6e+02 Score=20.95 Aligned_cols=10 Identities=20% Similarity=-0.137 Sum_probs=4.5
Q ss_pred hccCCHHHHH
Q 020193 273 GRGGRFVEAA 282 (329)
Q Consensus 273 ~~~~~~~~a~ 282 (329)
+..|+.+-+.
T Consensus 182 ~~~~~~~~v~ 191 (228)
T 2dzn_A 182 LAEGHGDAAV 191 (228)
T ss_dssp HHTTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3445554333
Done!